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From 11/03/2019 to 12/02/2019

12/02/2019

05:32 PM Revision b6143fd1 (cdmlib): cleanup
Andreas Müller
05:24 PM Revision 9f6ce960 (cdmlib): fix potential NPE when retrieving identifiers via type == null
Andreas Müller
04:56 PM Revision 0d1a8c63 (cdmlib): cleanup
Andreas Müller
04:53 PM Revision 1cbe14bb (cdmlib): cleanup
Andreas Müller
04:46 PM Revision 86c08d73 (taxeditor): Add tooltip to TermSearch menu item
Patrick Plitzner
04:35 PM Revision 287ae15a (taxeditor): ref #8450 Fix matrix taxon node hierarchy
Patrick Plitzner
03:56 PM Revision 7dd0d600 (cdmlib): ref #8766 Fix potential ArrayIndexOutOfBoundsException
Patrick Plitzner
03:43 PM Revision 57b6d909 (cdmlib): ref #8468 replace Inapplicable tables in ClearDB files (remaining)
Andreas Müller
03:39 PM Revision f7a5f872 (cdmlib): ref #8766 remove a.level from TermDto SELECT statement
Patrick Plitzner
03:24 PM Revision dfbe0f52 (cdmlib): ref #8468 replace Inapplicable tables in ClearDB files
Andreas Müller
03:05 PM Revision 2fcd811a (cdmlib): ref #8468 further fix test schema
Andreas Müller
02:19 PM Revision 32d3420e (cdmlib): ref #8468 fix model cache and test sql
Andreas Müller
01:33 PM Revision 69b55e11 (cdmlib): ref #8766: add level to TermDto
Katja Luther
01:29 PM Revision 07b9b244 (taxeditor): ref #8679 Set taxon node filter and no batch size adaption
Patrick Plitzner
01:28 PM Revision b1b9414c (cdmlib): typo
Patrick Plitzner
01:28 PM Revision 34726589 (cdmlib): ref #8679 Add initTransaction() super method
- hook for initializing object when a new transaction starts Patrick Plitzner
01:27 PM Revision 26024c71 (taxeditor): ref #8677: layout issues - continue
Katja Luther
01:21 PM Revision f67d22e7 (taxeditor): ref #8677: layout issues
Katja Luther
12:54 PM Revision b58f9986 (cdmlib): minor
Andreas Müller
12:54 PM Revision 9e5a8c54 (cdmlib): ref #8468 fix JAXB for removed inapplicableIF
Andreas Müller
12:31 PM feature request #8433 (Duplicate): Disallow user names with whitespace
This is a duplicate for #8454 and has been fixed in CDM UML 5.8 Andreas Müller
12:26 PM task #8468 (Resolved): Remove old InapplicableIf tables
Applied in changeset commit:cdmlib|73391892ccf6af23d1f83357e460ea9b55df4e2d. Andreas Müller
12:26 PM Revision a2c8f975 (cdmlib): ref #8468 remove old attributes from TermNode
Andreas Müller
12:25 PM Revision 65397e52 (cdmlib): rename TableDroper -> TableDropper
Andreas Müller
12:23 PM Revision 73391892 (cdmlib): fix #8468
Andreas Müller
12:23 PM Revision cdaeac9a (cdmlib): ref #8738 , ref #8702 add update script to remove null constraints fr...
Andreas Müller
12:12 PM bug #8702 (Resolved): Remove Not null constraint for uuid in AUD tables
Andreas Müller
12:12 PM bug #8738 (Resolved): CdmLink.startPos and .endPos should allow Null
Andreas Müller
10:55 AM bug #8738 (Closed): CdmLink.startPos and .endPos should allow Null
The table was IntextReference before. After using it for class CdmLinkSource also the originally NOT NULL columns mus... Andreas Müller
12:11 PM Revision dc5a41f6 (cdmlib): ref #8738 , ref #8702 add update script to remove null constraints fr...
Andreas Müller
12:09 PM Revision 38f1e0aa (cdmlib): cleanup
Andreas Müller
12:01 PM Revision c3193e02 (cdmlib): rename SchemaUpdater v5.x packages
Andreas Müller
11:32 AM bug #8737 (Resolved): delete taxon included in two classifications deletes taxonname
Now there is also the possibility to set the taxonnode configurator to deletetaxon = false. This was missing in the d... Katja Luther
09:42 AM bug #8737: delete taxon included in two classifications deletes taxonname
please review. Katja Luther
09:35 AM bug #8737 (Closed): delete taxon included in two classifications deletes taxonname
when deleting a taxon used in two classifications, the taxon still exist, but the name is deleted. This is because of... Katja Luther
11:28 AM Revision a66ea40a (taxeditor): ref #8737: add possibility to delete taxonnode wizard for only del...
Katja Luther
10:35 AM bug #8733: Descriptive data set: Specimens of a newly added taxon are not listed in Select Specim...
This ticket is complex. In the ticket description is not written HOW the taxon is added. In general the underlying se... Andreas Müller
08:24 AM bug #8733 (Feedback): Descriptive data set: Specimens of a newly added taxon are not listed in Se...
Currently the specimens listed in the specimen selection dialog are cached after the first time opening the dialog be... Patrick Plitzner
08:40 AM feature request #8665 (Resolved): Rename "New" to "New Tree" in Term Tree editors
Applied in changeset commit:taxeditor|210af90ccae0c45e1234bdb8fe216285293546c6. Patrick Plitzner
08:40 AM Revision 210af90c (taxeditor): fix #8665 Show human readable term type in new tree string
Patrick Plitzner
08:37 AM bug #8732 (Duplicate): Descriptive Data Set Navigator: label not refreshed after change in Descri...
This is already solved for release 5.12 with #8661
Please validate with the current nightly build.
Patrick Plitzner
08:15 AM Revision 6f4db5c3 (taxeditor): remove system.out
Patrick Plitzner
07:40 AM Revision 9a2d6065 (cdmlib): ref #8679 Set batchMinFreeHeap in test setup
Patrick Plitzner

11/29/2019

05:17 PM bug #8736 (Closed): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
To reproduce:
* use database: caryophyllales_spp (cactaceae)
* create new Descriptive Dataset (non specimens so f...
Andreas Kohlbecker
04:27 PM Revision 73f2833f (cdmlib-apps): cleanup
Andreas Müller
04:20 PM Revision b4e7eccb (cdmlib-apps): #3945 move some PESI classes to new packages and minor issues
Andreas Müller
04:09 PM task #7976 (In Progress): [PESI][ERMS] Erms taxon import
Andreas Müller
04:09 PM task #8509 (In Progress): [PESI][ERMS] Export ERMS data to PESI
Andreas Müller
04:06 PM task #8577 (In Progress): [PESI][E+M] Validation for E+M export
Andreas Müller
03:35 PM bug #8735 (Duplicate): Character Node Editor: allow line breaks at slashes in structure represent...

The line wrapping does not work for long structure representation. Breaks only happen where the term labels contain...
Andreas Kohlbecker
01:48 PM Revision 45ca2f16 (cdmlib): ref #8679 Replace existing description elements in re-aggregation
-add test for re-aggregation Patrick Plitzner
12:58 PM Revision 91f2c632 (cdmlib): ref #8679 Load dataset in each session
Patrick Plitzner
11:28 AM task #8734 (Closed): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
Andreas Müller
10:34 AM task #8734 (In Progress): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
SQL to use
~~~
UPDATE DescriptionElementBase deb
INNER JOIN DefinedTermBase a ON deb.area_id = a.id
INNER JOIN ...
Andreas Müller
10:33 AM task #8734 (Closed): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
This will shorten the textuell representations of distribution data in the data portal Andreas Müller
01:49 AM bug #8731 (Resolved): BioCase Specimenimport: empty result list and SWTException:Invalid thread a...
now it works again with the nightly build. Katja Luther
01:44 AM Revision c11b0cd2 (taxeditor): data cleaning
Katja Luther
01:30 AM Revision 7b017c3e (taxeditor): test other exception handling
Katja Luther
01:07 AM Revision 947597cb (cdmlib): fix test
Katja Luther

11/28/2019

12:47 AM bug #8731 (In Progress): BioCase Specimenimport: empty result list and SWTException:Invalid threa...
This is strange, I can not reproduce this with an editor started from the workspace, also when using the actual git d... Katja Luther
03:45 PM bug #8731: BioCase Specimenimport: empty result list and SWTException:Invalid thread access in se...
An import of specimens is not possible wit the current code base in the development branch. Andreas Kohlbecker
03:40 PM bug #8731 (Closed): BioCase Specimenimport: empty result list and SWTException:Invalid thread acc...
I am not sure about the timing of the situation in which this exception occurred.
I was searching the `http://ww3....
Andreas Kohlbecker
12:32 AM Revision 5adfd05a (taxeditor): ref #8731: minor
Katja Luther
12:11 AM Revision 9b954e94 (cdmlib): add check for taxon and name in test
Katja Luther
12:03 AM Revision 25f62069 (cdmlib): fix delete problems of taxa used in multiple classifications
Katja Luther
06:57 PM bug #8733 (Closed): Descriptive data set: Specimens of a newly added taxon are not listed in Sele...
to reproduce
1. create Descriptive data set in caryophyllales_spp
* adding *Rhipsalis pilocarpa* by drag and dro...
Andreas Kohlbecker
06:33 PM bug #8732 (Duplicate): Descriptive Data Set Navigator: label not refreshed after change in Descri...
just exactly what is written in the subject.
Andreas Kohlbecker
03:55 PM Revision ec07174a (cdmlib-apps): fix E+M Activator
Andreas Müller
03:54 PM Revision 46ae6d5a (taxeditor): ref #8679 Set taxon node filter and aggregation mode
Patrick Plitzner
03:54 PM Revision 7079d656 (cdmlib-apps): cleanup
Andreas Müller
03:53 PM Revision 456a8f57 (taxeditor): Fix potential NPE
Patrick Plitzner
03:52 PM Revision 2adab869 (cdmlib-apps): update BgbmInstancesUpdater
Andreas Müller
03:31 PM Revision 33373464 (cdmlib): ref #8679 Remove usage of apache commons math
Patrick Plitzner
03:31 PM Revision 2b226eee (cdmlib): ref #8679 Add checks and repairs for valid quantitative data
Patrick Plitzner
03:31 PM Revision 2bc176df (cdmlib): Enhance toString()
Patrick Plitzner
03:23 PM bug #8730 (New): OWL Term export progress monitor reports wrong process percentage
The initial percentage is really funny:
![](picture396-1.png)
Andreas Kohlbecker
12:30 PM Revision 4bbc2279 (cdmlib): minor
Andreas Müller
12:29 PM bug #8720: blank perspective after using "Switch User"
the perspective looked like this:
![](picture283-1.png)
today is the first day this is not happening for quite ...
Andreas Kohlbecker
12:05 PM bug #8720: blank perspective after using "Switch User"
I am not sure if I fully understand the problem. When I try to change the user I get the "Taxonomic" perspective but ... Andreas Müller
12:18 PM Revision 7903d041 (cdmlib): ref #8679 PropertyPath and code cleanup
Patrick Plitzner
12:18 PM Revision 185e63ee (cdmlib): ref #8679 Convert to base class aggregation architecture
- convert aggregation of quantitative data within taxon Patrick Plitzner
12:18 PM Revision 93c52359 (cdmlib): ref #8679 Convert to base class aggregation architecture
- init dataset in preAccumulate
- filter SpecimenDescriptions by data set
Patrick Plitzner
12:18 PM Revision ba1bc425 (cdmlib): Enhance toString()
Patrick Plitzner
12:18 PM Revision 54ed2cf2 (cdmlib): ref #8679 Add apache commons math to pom
Patrick Plitzner
12:18 PM Revision 497e4d3a (cdmlib): add toString()
Patrick Plitzner
12:18 PM Revision 1eb0391c (cdmlib): Add count to toString()
Patrick Plitzner
12:18 PM Revision 1f0292f8 (cdmlib): ref #8679 Convert to base class aggregation architecture
- convert aggregation of categorical data within taxon Patrick Plitzner
12:18 PM Revision 5ef244fc (cdmlib): ref #8679 Convert to base class aggregation architecture
- convert aggregation of quantitative data to parent
- convert aggregation of categorical data to parent
Patrick Plitzner
11:51 AM bug #8729: Refresh Taxon Navigator after Specimen import
Seems to be very similar to #8659. So we may think about putting it also to 5.12. Katja, what do you think? Andreas Müller
10:54 AM bug #8729 (New): Refresh Taxon Navigator after Specimen import
After a successful specimen import vi BioCASE Provider the Taxon Navigator is not being refreshed.
New created Clas...
Andreas Kohlbecker
11:03 AM Revision 0e6482c8 (cdmlib): ref #8724 fix JAXB for CdmLink
Andreas Müller
10:04 AM Revision 4cda0d0e (cdmlib): ref #7623: fix NPE
Katja Luther
09:34 AM bug #8728: Specimen import via BioCASE silently fails
Andreas Kohlbecker wrote:
> The problem in one specific case was that the user was not permitted to update a person:...
Andreas Müller
09:26 AM bug #8728: Specimen import via BioCASE silently fails
Next Problem:
~~~
[CREATE] not permitted for 'kurs1' on TaxonNode[uuid:79c3deac-ee1d-4622-91fa-746be0894161', toS...
Andreas Kohlbecker
08:51 AM bug #8728: Specimen import via BioCASE silently fails
The problem in one specific case was that the user was not permitted to update a person:
~~~
[UPDATE] not permitt...
Andreas Kohlbecker

11/27/2019

04:42 PM bug #8728: Specimen import via BioCASE silently fails
As the import works without problems with the `admin` user, it seems as if this is a permission problem.
@Katja: 1...
Andreas Kohlbecker
04:24 PM bug #8728: Specimen import via BioCASE silently fails
this is reproducible
once this error has occurred the taxeditor has to be restarted, otherwise further import atte...
Andreas Kohlbecker
04:15 PM bug #8728 (New): Specimen import via BioCASE silently fails
ABCD Specimen import via BioCASE provider silently fails
Logged in as user with GAs: `Editor` + `TAXONNODE.[CREATE...
Andreas Kohlbecker
03:39 PM EDIT Platform Etablierung task #8727 (In Progress): Test Workshop workflow
Andreas Kohlbecker
03:21 PM EDIT Platform Etablierung task #8727 (Closed): Test Workshop workflow
**Use the simple editor user accounts: kurs1..5**
The section of taxa to test the workflow with is based in the ...
Andreas Kohlbecker
03:00 PM Revision 700aa970 (cdmlib): Fix potential NPE
Patrick Plitzner
02:58 PM Revision 5a36818d (cdmlib): ref #8724 handle taxon in CdmLinkSource
Andreas Müller
02:39 PM feature request #8686: Support CdmLink sources in bibliography
Further more there is a discussion if links to taxa should be direct links from the description(element) to the taxon... Andreas Müller
02:38 PM feature request #8686: Support CdmLink sources in bibliography
Support for link to taxa has been added in #8724. So we need to check or implement that also links to taxa are handle... Andreas Müller
02:36 PM feature request #8724 (Resolved): Allow OriginalSource to link to Taxon
Andreas Müller
02:25 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon
When aggregating (or moving) data one may want to link to the taxon the data originally comes from so we need a possi... Andreas Müller
02:35 PM feature request #8726 (New): the search preference search field should be a list
The preference defining the search field should be not a single value, but a list of fields on which the seach should... Katja Luther
02:34 PM feature request #8725 (Feedback): Add abbreviation to namedArea text field in distribution detail...
Some named areas have the same label therefore it would be nice to show an abbreviation like idInVoc. This should be ... Katja Luther
02:31 PM Revision 35a4f2f3 (cdmlib): ref #8724 add Taxon to ICdmTarget
Andreas Müller
02:31 PM Revision 41e8eb66 (cdmlib): minor
Andreas Müller
02:28 PM Revision de51cd68 (cdmlib): ref #7623: improve gathering agent parsing and query generation
Katja Luther
02:24 PM Revision f084efb4 (taxeditor): ref #8677: layout issues in aggregation dialog
Katja Luther
09:41 AM feature request #8721 (In Progress): Use webservice to get all biocase provider listed by gbif
The prefilled combo and the filtering for entered text is implemented in the specimen dialog now. Katja Luther
09:38 AM Revision 14a62f14 (taxeditor): ref #8721: use webservice to get all biocase provider
Katja Luther
09:18 AM Revision cf6340d0 (cdmlib): ref #8679 Test leaf color
Patrick Plitzner
09:11 AM bug #8723 (New): Distribution detailsview: changing the area removes the state
When changing the area of a distribution the status is not displayed anymore. But the distribution still has the stat... Katja Luther
08:57 AM Revision 5125fb32 (cdmlib): fix NPE in media rights part of biocase import
Katja Luther
07:31 AM Revision eace364b (cdmlib): ref #8679 Add leaf color
pplitzner

11/26/2019

06:41 PM Revision 6b6ebf81 (cdmlib): ref #8679 Refactoring
pplitzner
06:16 PM Revision 4bf5063f (cdmlib): ref #8679 Add specimen to sibling taxon
pplitzner
05:48 PM Revision c14bf2dc (cdmlib): Avoid empty description elements
Patrick Plitzner
05:09 PM Revision 9af9bac7 (taxeditor): ref #8679 adapt TaxEditor to changes in DescriptionAggregation dat...
Andreas Müller
05:06 PM Revision 3177d9fb (taxeditor): ref #8679 adapt TaxEditor to changes in DescriptionAggregation dat...
Andreas Müller
05:01 PM Revision f34d4889 (cdmlib): adapt TestAggregations to areaUuidList (2)
Andreas Müller
04:45 PM Revision 79e76c25 (cdmlib): adapt TestAggregations to areaUuidList
Andreas Müller
04:42 PM Revision ab856113 (cdmlib): update TestAggregations
Andreas Müller
04:39 PM Revision 672c7781 (cdmlib): Avoid empty description elements
Patrick Plitzner
04:32 PM Revision 84b66dd2 (cdmlib): cleanup
Andreas Müller
04:32 PM Revision d22d2ab0 (cdmlib): ref #8679 add tests to StructuredDescriptionAggregation and fix toGra...
Andreas Müller
04:09 PM EDIT Platform Etablierung task #8722 (Closed): Provide Manuals and Dokumentation for the Kurs „Integrated Taxonomy“ WiSe 20...
Documentation needed for the Kurs:
* Matrix-Editor manual - is being prepared ...
* List of user accounts for dem...
Andreas Kohlbecker
03:59 PM EDIT Platform Etablierung task #8712 (Closed): Kurs "Integrated Taxonomy" : prepare setup for workshop computers
Andreas Kohlbecker
03:01 PM Revision 1520e79e (cdmlib): implement another possibility of gathering agent text in abcd (agentT...
Katja Luther
02:53 PM feature request #8721 (Closed): Use webservice to get all biocase provider listed by gbif
For the specimen search it would be nice to have a list of all biocase provider. (Jörg provided us a webservice)
W...
Katja Luther
01:39 PM Revision 515150ac (cdmlib): ref #8677: revert a change of last commit
Katja Luther
12:58 PM Revision ff7c0745 (cdmlib): ref #8677: use changes DistributionAggregationConfig in controller
Katja Luther
12:31 PM Revision 68362152 (taxeditor): ref #8677: add distribution aggregation as long running task to ed...
Katja Luther
12:10 PM Revision 44ba5690 (taxeditor): ref #8677: add distribution aggregation as long running task to ed...
Katja Luther
12:10 PM Revision 421a91e6 (taxeditor): smaller changes in specimen import view
Katja Luther
12:08 PM Revision 26cfae1e (cdmlib): ref #8677: use uuid list instead of namedArea list in DistributionAgg...
Katja Luther
10:43 AM bug #8720 (New): blank perspective after using "Switch User"
When switching the user *General > Switch User* all views and editors are closed, making the perspective blank. After... Andreas Kohlbecker
09:19 AM bug #8719 (Resolved): installation profile 'CDM_Portal' causes Integrity constraint violation: 10...
Applied in changeset commit:cdm-dataportal|56d39875a598bad7e9c7591d5436b0ac63160cae. Andreas Kohlbecker
08:23 AM bug #8719 (Closed): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048...
this bug has been discovered in the process of automatic creation of workshop servers (`server-scripts/workshop-setup... Andreas Kohlbecker
09:19 AM Revision 56d39875 (cdm-dataportal): fix #8719 add missing page and cache values for new blocks in...
Andreas Kohlbecker

11/25/2019

12:01 AM Revision 775d38e1 (cdmlib): ref #8469 avoid merge to singular branches
Andreas Müller
10:54 PM Revision 9415e8dd (cdmlib): cleanup
Andreas Müller
10:53 PM Revision dd864603 (cdmlib): ref #8469 fix min max issue
Andreas Müller
07:32 PM Revision ca93e81e (cdmlib): ref #8469 handle all sub-branch taxa on the level they belong to
Andreas Müller
02:51 PM feature request #8460: Show examples in text field
Try to implement a base functionality.
This is already implemented in taxon search.
Andreas Müller
12:14 PM Revision d1504e5a (cdmlib): ref #8469 first handling of taxa covering all subbranches, but probab...
Andreas Müller
12:14 PM Revision 85d65189 (cdmlib): ref #8469 fix no feature left, prepare taxon covering all subbranches...
Andreas Müller
12:14 PM Revision cde6a65d (cdmlib): cleanup
Andreas Müller
09:00 AM Revision ab96570c (cdmlib): ref #8713 Only add aggregated cat. data if states are present
pplitzner
08:52 AM Revision c8def030 (cdmlib): ref #8450 Only add aggregated quant. data if data present
pplitzner

11/23/2019

09:45 PM Revision 455db50e (cdmlib): ref #8469 fix reuse of reature states filter
Andreas Müller

11/22/2019

10:06 PM Revision ad5bae70 (cdmlib): cleanup
Andreas Müller
10:06 PM Revision ad8460be (cdmlib): ref #8679 preliminary fix failing test for rank aggregation with abse...
Andreas Müller
09:18 PM Revision f6fda820 (cdmlib): ref #8679 remove old COMPUTE marker and move ignore lists to configur...
Andreas Müller
01:27 PM bug #8718: polytomousKey page: better handling of invalid uuids
Patrick, this is relevant for additivity (currently PKs get a new uuid with every generation) so we may think about m... Andreas Müller
12:53 PM bug #8718 (Closed): polytomousKey page: better handling of invalid uuids
ich habe gerade gesehen, dass ein PolyKey, wenn dessen uuid nicht stimmt unschöne Fehler schmeißt:
http://test.e-t...
Andreas Kohlbecker
10:43 AM Revision 1b7e1801 (cdm-dataportal): ref #8595 Fix moved method invocation
Patrick Plitzner
10:41 AM Revision eb89b236 (cdm-dataportal): ref #8595 Fix feature table when no data available
Patrick Plitzner
10:38 AM Revision 5ac909c0 (cdm-dataportal): ref #8595 Only show available datasets label when data available
Patrick Plitzner

11/21/2019

12:12 AM Revision 8e29c4cc (cdmlib): ref #8469 introduce KeyTaxon to allow multiple data and multiple desc...
Andreas Müller
05:19 PM Revision 9b434f6a (cdm-dataportal): ref #8657 moving description methods to description.inc
Andreas Kohlbecker
05:13 PM Revision ab025781 (cdm-dataportal): ref #8686 removing linebreaks from description labels and sim...
Andreas Kohlbecker
04:16 PM task #8716 (Resolved): Configure taxeditor to run with GTK2 in linux
please report if you are having any problems due to the switch to GTK2 Andreas Kohlbecker
04:09 PM task #8716: Configure taxeditor to run with GTK2 in linux
Andreas Kohlbecker wrote:
> as documented in https://wiki.eclipse.org/SWT/Devel/Gtk/GtkVersion the gtk version can b...
Andreas Kohlbecker
04:03 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
as documented in https://wiki.eclipse.org/SWT/Devel/Gtk/GtkVersion the gtk version can be set via
~~~
--launcher...
Andreas Kohlbecker
01:12 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
Der Taxeditor verwendet SWT in der Version 3.105.3.v20170228-0512 (Id: org.eclipse.swt, Version: 3.105.3.v20170228-05... Andreas Kohlbecker
04:15 PM Revision 2279c433 (taxeditor): ref #8716 setting GTK to version 2 in the product launcher configu...
Andreas Kohlbecker
04:13 PM Revision c7e854d5 (cdm-dataportal): ref #8595 Only show feature table when data available
Patrick Plitzner
03:58 PM bug #8717 (New): Improve display of PolytomousKey nodes which have a feature
If a PKN has a feature and not a statement it is repeated multiple times for the child alternatives. A better layout ... Andreas Müller
03:58 PM Revision 9078b9c6 (cdm-dataportal): ref #8686 fixing refactoring bug
Andreas Kohlbecker
03:29 PM bug #8313 (Feedback): Multiple categorical data get deleted when clicked on in Character Matrix
Reopen as it happens again.
How to reproduce: in any categorical cell select 2 states. Leafe the cell (it shows bo...
Andreas Müller
03:21 PM feature request #8714 (Resolved): description page: Show multiple datasets per description as li...
Applied in changeset commit:cdm-dataportal|cf89f7e20f7cbd623d7d373bbf9061003f175179. Patrick Plitzner
11:42 AM feature request #8714 (Resolved): description page: Show multiple datasets per description as li...
A description can have multiple descriptive data sets. These define which features are displayed and in which order.
...
Patrick Plitzner
03:21 PM Revision cf89f7e2 (cdm-dataportal): fix #8714 Show list of available datasets when description ha...
Patrick Plitzner
02:59 PM Revision 185dfa24 (cdmlib): ref #8469 fix multiple dependencies for 1 parent feature issue
Andreas Müller
02:57 PM Revision 92a7f32b (cdmlib): cleanup
Andreas Müller
02:38 PM feature request #8595 (Resolved): Create description detail page
Patrick Plitzner
02:33 PM Revision 16515bdf (cdm-dataportal): ref #8595 Add creation date for cloned source descriptions
Patrick Plitzner
02:32 PM Revision 9705e44e (cdm-dataportal): ref #8657 Avoid null in URL
Patrick Plitzner
02:07 PM Revision 424a2bee (cdmlib): ref #8469 use FeatureState in PolytomousKeyGenerator
Andreas Müller
02:00 PM Revision 1e16407a (cdm-dataportal): ref #8657 Use link icon for descriptions, taxa and specimens
Patrick Plitzner
01:47 PM Revision 875d5c3b (cdm-dataportal): ref #8657 Add taxon information to description detail page
Patrick Plitzner
01:23 PM Revision 7e99b1ac (cdm-dataportal): ref #8657 Remove $linkText parameter
Patrick Plitzner
01:19 PM Revision ea0ae3c7 (cdm-dataportal): ref #8657 Add descriptive data set information to description...
Patrick Plitzner
12:53 PM Revision fe3a5674 (cdm-dataportal): ref #8686 showing CdmLink sources - initial implementation, n...
Andreas Kohlbecker
12:35 PM task #8468 (In Progress): Remove old InapplicableIf tables
Andreas Müller
12:21 PM feature request #8715: Make 'delete Taxonnode' a lonrunning task
Deleting nodes can take some time and results in connection warnings or timeouts. This can be solved by running the d... Katja Luther
12:16 PM feature request #8715 (New): Make 'delete Taxonnode' a lonrunning task
Katja Luther
11:49 AM Revision 51133f9a (cdmlib): ref #8469 filter non-character data
Andreas Müller
11:49 AM Revision 3f678339 (cdmlib): cleanup PolytomousKeyGenerator
Andreas Müller
10:46 AM Revision c0d26dcf (cdmlib): logging of canceled import
Andreas Kohlbecker
10:46 AM Revision b6f0e806 (cdmlib): ref #8673 extend initstrategy by cdmSource for ref #8686
Andreas Kohlbecker
10:32 AM Revision 16a4ba6a (cdmlib): minor
Andreas Müller
10:11 AM Revision e0fce64c (cdmlib): ref #8713 add test class for StructuredDescriptionAggregation
Andreas Müller
08:58 AM Revision 6d2d9cf5 (cdmlib): ref #8713 add test class for StructuredDescriptionAggregation
Andreas Müller
08:19 AM feature request #8713 (Resolved): Improve structured descriptive data aggregation
* Tests
* Remove empty categorical data creation
* use base class algorithm from #8679
* TBC
Andreas Müller
02:26 AM Revision e434b808 (cdmlib): ref #8469 better handling of empty or null CategoricalData
Andreas Müller

11/20/2019

11:54 PM Revision 7e2ee71e (cdmlib): cleanup
Andreas Müller
11:54 PM Revision b73be607 (cdmlib): Some more monitoring during StructuredDescriptionAggregation
Andreas Müller
05:11 PM EDIT Platform Etablierung task #8689: Export Flora of Greece Bupleurum using Cdm2Cdm export
I change Project and milestone as it is mostly data related. Andreas Müller
03:37 PM EDIT Platform Etablierung task #8689 (Closed): Export Flora of Greece Bupleurum using Cdm2Cdm export
The data looks complete and did not cause any errors when opening the taxa in the editor.
I consider this issue as...
Andreas Kohlbecker
05:01 PM feature request #8281 (Closed): Doubtful flag for TaxonNode
E+M data updated
~~~
UPDATE TaxonNode
Set unplaced = 0, doubtful = 1
WHERE unplaced = 1
~~~
also for _AUD
Andreas Müller
05:00 PM feature request #8686 (In Progress): Support CdmLink sources in bibliography
Andreas Kohlbecker
04:59 PM Revision 6527c2f5 (cdm-dataportal): php-doc: return value
Andreas Kohlbecker
04:51 PM EDIT Platform Etablierung task #8711 (Closed): add additivity ontologies to the bupleurum database
completed a dump is stored at edit-test:/root/cdm_test_bupleurum-2019-11-20-001.sql.bz2 Andreas Kohlbecker
01:25 PM EDIT Platform Etablierung task #8711 (Closed): add additivity ontologies to the bupleurum database
the ontology can be downloaded from https://cybertaxonomy.eu/download/data/ontology/additivity/
the characters mus...
Andreas Kohlbecker
04:24 PM feature request #8657 (Resolved): Order description element in portal according to CharacterTree
Patrick Plitzner
02:19 PM Revision c2138217 (taxeditor): german i18n for "Descriptive Data Set"
Patrick Plitzner
02:04 PM Revision e7b6e47a (cdmlib): remove possibility to define aggreaged distributions on description e...
Andreas Müller
02:04 PM Revision 65bc38bc (cdmlib): cleanup
Andreas Müller
02:04 PM Revision b11aa70a (cdmlib): cleanup
Andreas Müller
01:54 PM Revision 8eaf9b31 (cdmlib): abcd import: avoid potential NPE and emtpy authors
Katja Luther
01:32 PM EDIT Platform Etablierung task #8712 (Closed): Kurs "Integrated Taxonomy" : prepare setup for workshop computers

* We will be using the edit-demo-2 server for the Kurs "Integrated Taxonomy"
* prepare database: - **DONE**
...
Andreas Kohlbecker
12:58 PM task #8710: Decide if sub-area Preference and/or status order preference rule
relevant code:
~~~
define('CDM_DISTRIBUTION_FILTER_DEFAULT', serialize(
array(
'filter_rules' => array(
'statu...
Andreas Müller
12:57 PM task #8710: Decide if sub-area Preference and/or status order preference rule
Probably needs discussion with users. Andreas Müller
12:56 PM task #8710 (New): Decide if sub-area Preference and/or status order preference rule
Currently they are switched of in default dataportals.
The setting can be found in the portal settings on the genera...
Andreas Müller
12:47 PM Revision d3ac3ea7 (cdmlib): ref #8657 Extend property path for description init strategy
Patrick Plitzner
12:41 PM Revision b6fb9923 (cdmlib): Revert "ref #8657 Add (remote) service for ordered description elemen...
This reverts commit 7af2c90016dd6215526a732c2d5d8b281c779d0f. Patrick Plitzner
12:40 PM Revision a38c0718 (cdm-dataportal): ref #8657 Retain hierarchy information of description elements
- remove web service for flat ordered list Patrick Plitzner
12:10 PM feature request #8709 (New): Show last selected name in selection dialog of name in source
mail Eckhard v. Raab-Straube:
was auch nett wäre: wenn sich der Editor bei der Auswahl des „name in source“ an die...
Katja Luther
12:05 PM feature request #8708 (New): Sort taxa in distribution editor same as in navigator
mail Eckhard v. Raab-Straube:
Hallo,
zum Verbreitungseditor:
wenn man den Verbreitungseditor von einem höher...
Katja Luther
12:03 PM feature request #8707 (New): Use NAT Table for specimen search result
The search result for the specimen search contains not all informations needed. Therefore it should be shown in a NAT... Katja Luther
11:45 AM feature request #8706 (Resolved): taxeditor error report with timestamps
Wie wäre es wenn wir dem Fehlerprotokoll mal einen Timestamp spendierten? Damit wäre es leichter den Fehler einem bes... Andreas Kohlbecker
01:35 AM bug #8670 (Resolved): Unwanted distribution aggregation/display on 2 levels
Dieses Ticket hat primär mit der Kartenanzeige und nicht mit der Aggregation zu tun. Bei der Kartenanzeige gibt es di... Andreas Müller

11/19/2019

11:12 PM task #8671: Distribution in E+M (BM) on different levels
AM
Die Regel klingt erstmal sinnig und einfach. Ich habe allerdings gerade mal eine DB Abfrage gestartet, wie viel...
Andreas Müller
11:05 PM task #8671: Distribution in E+M (BM) on different levels
ERS:
die Anzeige ist so korrekt. Wenn ein Unterareal vorhanden ist, soll das höhere Areal nicht angezeigt werden, ...
Andreas Müller
05:16 PM task #8671 (In Progress): Distribution in E+M (BM) on different levels
Andreas Müller
05:38 PM bug #6629 (In Progress): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to...
Andreas Müller
05:31 PM feature request #8661 (Closed): "New DataSet" should ask for label and then open the dataset
Works fine Andreas Müller
05:28 PM feature request #8703 (Closed): Move TermSearch and Specimen(Import)Search to editor area of taxe...
Works fine. Thanks. Andreas Müller
02:46 PM feature request #8703 (Resolved): Move TermSearch and Specimen(Import)Search to editor area of ta...
Applied in changeset commit:taxeditor|0b7e08834f03d3e7ce2ea6c1f55c908a14d76758. Patrick Plitzner
02:28 PM feature request #8703 (Closed): Move TermSearch and Specimen(Import)Search to editor area of taxe...
Patrick Plitzner
05:27 PM bug #8705 (New): While specimen are loaded from provider the specimen list in specimen search sho...
to indicate that the search is not yet ready. Andreas Müller
05:25 PM feature request #8665 (Feedback): Rename "New" to "New Tree" in Term Tree editors
The problem in the ticket description is solved. Ticket can be closed.
Something I found when testing:
Can we u...
Andreas Müller
05:19 PM Revision cd10bbf6 (cdmlib): ref #8517 handle protected fieldunit titlecache in DerivedUnitFacadeF...
Andreas Müller
05:18 PM bug #8670 (In Progress): Unwanted distribution aggregation/display on 2 levels
Andreas Müller
05:15 PM task #8672 (In Progress): Source handling during (distribution) aggregation
Andreas Müller
04:59 PM bug #7665: ConcurrentModificationException when closing Editor
I think it happens still from time to time. Andreas Müller
04:57 PM feature request #3836 (Closed): Implement modifiers and modifying text for Description Elements i...
I think I tested this in the context of #8226 and I think it worked. Andreas Müller
04:54 PM EDIT Platform Etablierung task #8704 (In Progress): Test specimen import via BioCase and write documentation
Andreas Kohlbecker
04:52 PM EDIT Platform Etablierung task #8704 (Closed): Test specimen import via BioCase and write documentation

**TODO:**
* test specimen import via BioCase in taxeditor - **DONE and succesful**
* documentation **DONE**
Andreas Kohlbecker
04:46 PM bug #8517 (Resolved): SpecimenOrObservation: data from protected titleCache missig in portal pages
Sorry, I was not exact in my comment. I meant to move it from DerivedUnitFacadeCacheStrategy to DerivedUnitFacadeFiel... Andreas Müller
04:42 PM Revision 10fda345 (cdmlib): ref #8517 handle protected fieldunit titlecache in DerivedUnitFacadeF...
Andreas Müller
04:42 PM Revision d0eb3b5b (cdmlib): cleanup
Andreas Müller
04:18 PM EDIT Platform Etablierung report #8556 (Closed): sifting of existing documentation
Andreas Kohlbecker
04:16 PM EDIT Platform Etablierung task #8578 (Closed): Discuss and find appropriate terms for major editor parts (window, view, edi...
This task in complete since we have now a good naming strategy which should be acceptable for almost anybody:
"....
Andreas Kohlbecker
04:08 PM bug #8243: Cdm Cache uses a lot of disk space
The description states that the increase of diskspace usage happened in seconds "*free disk space to 100% full in sec... Andreas Kohlbecker
03:59 PM bug #8702: Remove Not null constraint for uuid in AUD tables
query in information_schema to find such columns
~~~
SELECT *
FROM COLUMNS c
WHERE c.COLUMN_NAME = 'uuid' AND ...
Andreas Müller
03:21 PM bug #8702: Remove Not null constraint for uuid in AUD tables
I updated most production DBs manually already. Andreas Müller
01:47 PM bug #8702 (Closed): Remove Not null constraint for uuid in AUD tables
Some databases do have uuid NOT NULL contraints in some _AUD tables. In caryo_spp I found the following tables with t... Andreas Müller
03:24 PM feature request #8694 (Closed): Specimen online import - Specimen Search: import button layout pr...
perfectly solved! Andreas Kohlbecker
02:42 PM feature request #8694 (Resolved): Specimen online import - Specimen Search: import button layout ...
Andreas Müller
02:46 PM Revision 0b7e0883 (taxeditor): fix #8703 Open term search and specimen (import) search to editor ...
Patrick Plitzner
02:13 PM Revision 56036a0c (taxeditor): ref #8694: layout issues in specimen import view
Katja Luther
01:54 PM bug #7683: external links Audit table should allow uuid to be null
We need an update script for all cases where AUD tables still have uuid NOT NULL: #8702 Andreas Müller
12:40 PM bug #8621: Do not save empty sources
the same should be implemented for identifiers and others Katja Luther
12:32 PM bug #8701 (New): Toggle button in GBIF Specimen import does not toggle but is select all/none
Toggle usually inverts the current selection. But the toggle button in the specimen import does either select all or ... Andreas Müller
12:07 PM feature request #8700: Geofilter for DescriptiveDataSets should be used for taxon nodes AND speci...
This needs to be configurable.
One issue to solve is that specimen data often use other area vocabularies then ta...
Andreas Müller
11:27 AM feature request #8700 (New): Geofilter for DescriptiveDataSets should be used for taxon nodes AND...
Currently only the taxon nodes are filtered with a TaxonNodeFilter Patrick Plitzner
11:08 AM bug #8699 (New): Add menu item to accepted name to set as basionym
mail Eckhard von Raab-Struabe:
wie kann man eigentlich im Freitext-Editor den akzeptierten Namen als Basionym der ...
Katja Luther
11:02 AM Revision ad8c4e9b (cdmlib): add ORCID iD as IdentifierType
Katja Luther
10:30 AM feature request #8698: Sort order in status drop down of distribution editor
Es sollte auf jeden Fall neben einer alphabetischen Sortierung auch eine geben, die sich an der Sortierung im Vokabul... Andreas Müller
09:56 AM feature request #8698 (New): Sort order in status drop down of distribution editor
Mail Eckhard von Raab-Straube:
Hallo,
eine weitere Sache:
kann ich die Reihenfolge der Statusangaben im Drop...
Katja Luther
01:11 AM Revision 973bd95e (cdmlib-apps): ref #8689 some updates to BupleurumExportActivator
Andreas Müller
01:10 AM Revision daf61d74 (cdmlib): ref #8689 fix issus in Cdm2Cdm import and add "removeImportSource" co...
Andreas Müller
01:09 AM EDIT Platform Etablierung task #8689 (Resolved): Export Flora of Greece Bupleurum using Cdm2Cdm export
This should be ready. Database is stored at cdm_test_bupleurum on edit-test. Please review. Andreas Müller

11/18/2019

12:33 AM Revision cb3810d6 (cdmlib-apps): ref #8689 some updates to BupleurumExportActivator
Andreas Müller
10:07 PM bug #8696 (New): ehcahe discstore conflict when using the taxeditor with multiple users on the sa...
The diskstore must be created in user specific subfolders of the system temp folder.
We should consider creating a...
Andreas Kohlbecker
06:33 PM feature request #8695 (New): Specimen online import - provider selection should remember last choise
During the specimen online import the choice made in the provider selection always is reset to GBIF.
If the custom p...
Andreas Kohlbecker
05:39 PM feature request #8694 (Closed): Specimen online import - Specimen Search: import button layout pr...
The import button seems to have a negative offset:
![](picture967-1.png)
Andreas Kohlbecker
05:36 PM feature request #8693 (New): Specimen online import - Specimen Search: show number of result items
The count of specimens which are found by BioCase search should be shown in the Specimen Search View. Andreas Kohlbecker
05:33 PM bug #8692 (New): Specimen online import is slow
Importing ~200 Specimens via Import > Specimen > Specimen online took more than one hour for about 200 specimens
*...
Andreas Kohlbecker
04:29 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
Ok, this makes it much clearer. I will have a look if this can be implemented somehow. Andreas Müller
03:50 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
This configurator is used in a lot of places: specimen tree editor, specimen facet search (experimental), TaxonServic... Patrick Plitzner
03:08 PM bug #6484: Include all paramaters of FindOccurrencesConfigurator in HQL query
Can you give some more information about context (specimen tree, matrix, dataportal, ...?) and other information requ... Andreas Müller
04:02 PM bug #6036: Problems with deleting type names
Is this still an open issue? Andreas Müller
04:00 PM bug #6182: Emptying protolog URI does not work
Protologues soon will be handled as OriginalSourceBase.externalLink, so not so important to fix Andreas Müller
03:58 PM bug #6585: Combo menu items have orange font
Is this still an open issue? Please also check on linux. Andreas Müller
03:56 PM feature request #6760: specimen import configuration
Is this still an open issue/duplicate/related to other tickets? Andreas Müller
03:53 PM Revision eba2d1f7 (cdmlib): typo
Patrick Plitzner
03:35 PM feature request #6676: A user with READ access to taxa but WRITE access to factual data cannot up...
I think this is something you are working on anyway. Andreas Müller
03:33 PM feature request #6866: Improve specimen page
Can you please relate this ticket with other tickets on this issue (specimen page)? Andreas Müller
03:01 PM bug #6545 (Closed): [MASTER] Eclipse 4 bugs
Andreas Müller
02:52 PM bug #7512: Saving in Specimen Tree View creates unwanted scrolling on windows
Can you please test if you can reproduce? Andreas Müller
02:39 PM bug #8129 (Closed): Load images asynchronously in media details view
Andreas Müller
02:38 PM bug #8129: Load images asynchronously in media details view
There is a follow up ticket #8691 Andreas Müller
02:36 PM bug #8691 (New): Remaining issues for asynchronous image loading
see #8129 for open issues Andreas Müller
02:33 PM bug #7911 (Worksforme): Changing areas in Distribution Editor yields to wrong column labels
Is probably fixed. Andreas Müller
02:31 PM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
Please check what is still open Andreas Müller
01:55 PM feature request #4511 (Rejected): Remove white space below EntitySelectionElement
Andreas Müller
01:39 PM feature request #4484: Evaluate publish flag for derivates in data portal
There is probably a duplicate somewhere. Ticket has some importance for GBOL specimen. Andreas Müller
12:41 PM Revision 29b21170 (cdmlib): add orcid and doi to identifier table
Katja Luther
10:40 AM feature request #8690 (New): DistributionTreeDTO and TreeNodeDTO implemented for description/dist...
The responses of the `/portal/description/distributionInfoFor/{uuid}` web-service can get quite huge for aggregated d... Andreas Kohlbecker
09:39 AM Revision f574c105 (cdmlib): revert some of the last changes
Katja Luther
09:28 AM Revision 38969108 (cdmlib-apps): ref #8651 adapt EuroMedActivator to changes in DistributionAggre...
Andreas Müller
09:27 AM Revision c49b3877 (cdmlib-apps): ref #8689 move Cdm2Cdm migration classes from cdm-pesi to cdmlib...
Andreas Müller
09:19 AM Revision 25516d86 (cdmlib): ref #8689 revert unwanted commited files
Andreas Müller
09:18 AM Revision 77281e25 (cdmlib): ref #8689 Cdm2Cdm import from app-import to cdmlib-io
Andreas Müller
09:18 AM EDIT Platform Etablierung task #8689 (Closed): Export Flora of Greece Bupleurum using Cdm2Cdm export
Andreas Müller
09:16 AM Revision b37495b9 (cdmlib): ref #8679 move DistributionAggregation functionality to base class
Andreas Müller
09:14 AM Revision 9c0a55dd (cdmlib): cleanup
Andreas Müller

11/17/2019

12:03 AM feature request #8472: Transmission engine for distribution aggregation needs to be adapted to ne...
Close only if run on cichorieae (and others?) and the tmp code removing existing "Computed" markers is not needed any... Andreas Müller
12:02 AM feature request #8472 (Resolved): Transmission engine for distribution aggregation needs to be ad...
Should be fixed now. Andreas Müller

11/16/2019

12:30 PM Revision c5fa3edd (cdm-dataportal): ref #8657 Add webservice call to cdm_api.module
Patrick Plitzner

11/15/2019

12:32 AM Revision 2acab840 (cdmlib): ref #8679 improve monitoring
Andreas Müller
12:05 AM Revision a8496b29 (cdmlib): ref #8679 improve tests
Andreas Müller
10:49 PM Revision 7800d0d0 (cdmlib): ref #8679 generic source handling with SourceModes
Andreas Müller
10:46 PM feature request #8688: Make OriginalSourceBase.cdmSource visible in TaxEditor
Please decide who could be assignee. It would be nice to have it soon. Andreas Müller
10:46 PM feature request #8688 (Closed): Make OriginalSourceBase.cdmSource visible in TaxEditor
The field OriginalSourceBase.cdmSource is usually filled during aggregations (for now). Therefore it does not need to... Andreas Müller
10:26 PM bug #8687 (New): Description page must show all DescriptionElement subclasses
Currently it seems to show only Categorical and Quantitative Data. But one never knows what data will really come wit... Andreas Müller
10:14 PM feature request #8686 (Closed): Support CdmLink sources in bibliography
OriginalSourceBase has the new attribute cdmSource. In original source this can exist instead of citation. Currently ... Andreas Müller
07:01 PM Revision c8424393 (cdmlib): cleanup
Andreas Müller
07:01 PM Revision 008371ae (cdmlib): ref #8679 move AggregationMode to ConfiguratorBase
Andreas Müller
06:07 PM Revision 7af2c900 (cdmlib): ref #8657 Add (remote) service for ordered description elements by tree
Patrick Plitzner
03:49 PM task #8679 (In Progress): Further unify description aggregation methods
Andreas Müller
03:30 PM feature request #8677: Add distribution aggregation to set subtree menu
I updated the above list Andreas Müller
03:09 PM feature request #8677: Add distribution aggregation to set subtree menu
Katja Luther wrote:
> In #6352 the mentioned configuration is:
>
> * lowerRank - default: UnknownRank = 5c4d6755...
Andreas Müller
02:31 PM feature request #8677: Add distribution aggregation to set subtree menu
In #6352 the mentioned configuration is:
* lowerRank - default: UnknownRank = 5c4d6755-2cf6-44ca-9220-cccf8881700...
Katja Luther
03:00 PM Revision 4ced804f (cdmlib): Allow wild cards in term facet search
Patrick Plitzner
02:59 PM Revision c7dfbd8b (taxeditor): Do not search with empty search string in facet search
Patrick Plitzner
01:43 PM bug #8517: SpecimenOrObservation: data from protected titleCache missig in portal pages
Andreas Müller wrote:
> This seems to work but handling the protected title cache of the **field** unit in the **der...
Andreas Kohlbecker
01:31 PM bug #8681 (In Progress): Fix sect. parsing
Andreas Müller
01:04 PM Revision 9235bde5 (cdmlib): ref #8679 fix rerun DistributionAggregation with changed sources and ...
Andreas Müller
01:01 PM task #8651 (Closed): Unify description aggregation methods (distribution and structured descripti...
Andreas Müller
01:01 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > AK and PP as you have developed the orginal classes maybe...
Andreas Müller
12:55 PM bug #8570 (Closed): PolytomousKeyNode.otherNode missing in REST service response
Works as expected. Andreas Müller
12:43 PM bug #8622 (Closed): Missing specimen Identifier leads to empty brackets in portal
I tested the above mentioned pages and they look fine. Andreas Müller
12:10 PM bug #8685 (Closed): Exception when calling DwC-A Export
Katja Luther
12:09 PM bug #8685 (Closed): Exception when calling DwC-A Export
mail:
Dear Andreas,
I enclose the error message I get from EDIT when I try to export the data in DwC-A format.
...
Katja Luther
10:55 AM Revision ed98102a (cdmlib-apps): ref #8651 adapt EuroMedActivator to changes in DistributionAggre...
Andreas Müller
10:54 AM Revision 83146769 (cdmlib-apps): ref #8684 fixing compile errors in cdm-pesi
Andreas Müller
10:49 AM Revision fd9dc38f (cdmlib): cleanup and minor
Andreas Müller
10:49 AM Revision 18d9b6eb (cdmlib): ref #8684 fixing compile errors in cdmlib-persistence
Andreas Müller
10:48 AM Revision 7d451c51 (cdmlib): fix potential NPEs in ABCD import
Katja Luther
10:21 AM bug #8684 (Resolved): ITaxonService.findTaxaByName misses initStrategy Parameter
Applied in changeset commit:cdmlib|36a4a34fab6ca46f2d4b5c3707d55c2e2078e442. Andreas Kohlbecker
10:21 AM task #8683 (Resolved): TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authors...
Applied in changeset commit:cdmlib|ca3e66ff9cd00985c5175e8a38ba8eab64063a13. Andreas Kohlbecker
10:21 AM Revision 36a4a34f (cdmlib): fix #8684 adding initStratery to ITaxonService.findTaxaByName
Andreas Kohlbecker
09:57 AM Revision ca3e66ff (cdmlib): fix #8683 TaxonDaoHibernateImpl.countTaxaByName rename parameter auth...
Andreas Kohlbecker
09:49 AM Revision c4fb8d80 (cdmlib): fixing scary string compare bug
Andreas Kohlbecker
09:34 AM Revision e23faa0a (taxeditor): Remove experimental status for additivity related UI parts
Patrick Plitzner
09:28 AM Revision 3a88b57a (taxeditor): ref #8656 i18n for loading label
Patrick Plitzner
09:26 AM Revision 390ef5ac (taxeditor): ref #8656 Update label if matrix loadiung failed
Patrick Plitzner
09:06 AM feature request #8661 (Resolved): "New DataSet" should ask for label and then open the dataset
Applied in changeset commit:taxeditor|a61d053e67fceb35c6cfb0065d08651c09b002e6. Patrick Plitzner
09:05 AM Revision a61d053e (taxeditor): fix #8661 "New DataSet" should ask for label and then open the dat...
Patrick Plitzner
08:29 AM feature request #8665 (Resolved): Rename "New" to "New Tree" in Term Tree editors
Applied in changeset commit:taxeditor|c127cb13020855f630fc93b36842e45d063997e0. Patrick Plitzner
08:29 AM Revision c127cb13 (taxeditor): fix #8665 Rename menu item label
Patrick Plitzner

11/14/2019

05:16 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
Andreas Müller wrote:
> AK and PP as you have developed the orginal classes maybe you want to have a look to the n...
Andreas Kohlbecker
04:59 PM feature request #8673 (Closed): Allow OriginalSource to link to other CDM objects
works as expected Patrick Plitzner
04:57 PM Revision 524c5307 (taxeditor): Show DescriptionType message instead of toString()
Patrick Plitzner
04:52 PM bug #8676 (Closed): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
Andreas Kohlbecker
04:49 PM bug #8684 (Closed): ITaxonService.findTaxaByName misses initStrategy Parameter
ITaxonService.findTaxaByName misses initStrategy Parameter causing unsolvable LIEs when using via the portal service
...
Andreas Kohlbecker
04:46 PM task #8683 (Closed): TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshi...
Andreas Kohlbecker
04:42 PM bug #5048 (Closed): cdm-server causes unusual high native memory consumption for jvm
last remaining subtask copied to #8682. ticket can now be closed. Andreas Kohlbecker
04:40 PM bug #8682 (Closed): cdm-server debian packages configured for jemalloc
in order to save native memory it is highly recommended to run the cdm-server with `jemalloc` instead of the system ... Andreas Kohlbecker
04:32 PM task #8674 (Closed): configure cdm-server docker image to run with jemalloc
everything ok! Andreas Kohlbecker
03:49 PM Revision 3411af18 (cdm-server): Merge branch 'release/5.11.0' into develop
jenkins
03:48 PM Revision 38d0d183 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
03:48 PM Revision 57b234aa (cdm-server): updating poms for branch'release/5.11.0' with non-snapshot versions
jenkins
03:47 PM Revision f90eb6c2 (cdm-webapp): Merge branch 'release/5.11.0' into develop
jenkins
03:47 PM Revision 11deb93a (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
03:47 PM Revision 66a333e4 (cdm-webapp): updating poms for branch'release/5.11.0' with non-snapshot versions
jenkins
03:47 PM Revision ffbc80d4 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.11.0
jenkins
03:47 PM Revision cf634b20 (cdm-dataportal): Merge branch 'release/5.11.0' into develop
jenkins
03:46 PM Revision c0b05cbc (cdm-dataportal): updating poms for branch'release/5.11.0' with non-snapshot ve...
jenkins
03:46 PM Revision cb5a98c5 (cdm-dataportal): release-preparation: production level css
jenkins
03:46 PM Revision 56b76499 (taxeditor): Merge branch 'release/5.11.0' into develop
jenkins
03:46 PM Revision 62c5bf9d (taxeditor): Merge branch 'release/5.11.0'
jenkins
03:45 PM Revision e5e80f40 (cdm-vaadin): Merge branch 'release/5.11.0' into develop
jenkins
03:45 PM Revision f302dddc (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
03:41 PM Revision 7649bbba (cdm-vaadin): updating poms for branch'release/5.11.0' with non-snapshot versions
jenkins
03:41 PM Revision 0ba1a84a (cdm-vaadin): jenkins bumping cdmlib.version to 5.11.0
jenkins
03:40 PM Revision 0fb9a6f8 (cdmlib): Updating develop poms back to pre merge state
jenkins
03:40 PM Revision 7488b0d6 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:40 PM Revision 34fc89c8 (cdmlib): Merge branch 'master' into develop
jenkins
03:40 PM Revision 458c738d (cdmlib): Merge branch 'release/5.11.0'
jenkins
03:23 PM Revision af102b7d (cdmlib): updating poms for branch'release/5.11.0' with non-snapshot versions
jenkins
02:34 PM bug #8681 (In Progress): Fix sect. parsing
See open issue in #8253 . Maybe it is a more general problem.
"this is in Rank.java and the map idInVocMap is fil...
Andreas Müller
02:32 PM feature request #8253 (Closed): Authors for genus autonyms
I found the place. And probably fixed it but will not commit before release as it needs to be further tested.
Crea...
Andreas Müller
02:19 PM feature request #8253: Authors for genus autonyms
Andreas Müller wrote:
> Can you give some more information where to find these things? Especially "map of the idInV...
Katja Luther
02:14 PM feature request #8253: Authors for genus autonyms
Can you give some more information where to find these things? Especially "map of the idInVocMap " Andreas Müller
02:06 PM feature request #8253 (Feedback): Authors for genus autonyms
Katja Luther
01:40 PM feature request #8253: Authors for genus autonyms
I found the cause of the parsing problem:
when searching for the rank by Rank.getRankByIdInVoc(infraGenRankMarker)...
Katja Luther
02:26 PM Revision dd0fb528 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.11.0-S...
jenkins
02:26 PM Revision c4b15330 (cdm-webapp): updating poms for 5.12.0-SNAPSHOT development
jenkins
02:26 PM Revision 281fde70 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.12.0-S...
jenkins
02:25 PM Revision 451335ef (taxeditor): Updated version in pom / project files to taxeditor version : 5.12...
jenkins
02:25 PM Revision fde64bdb (taxeditor): Updated version in pom / project files to taxeditor version : 5.11...
jenkins
02:23 PM Revision e2ef05a4 (cdm-server): updating poms for 5.12.0-SNAPSHOT development
jenkins
02:23 PM Revision b48c4700 (cdm-vaadin): jenkins bumping cdmlib.version to 5.11.0-SNAPSHOT
jenkins
02:23 PM Revision fd8f8d26 (cdm-vaadin): updating poms for 5.12.0-SNAPSHOT development
jenkins
02:23 PM Revision a12486b5 (cdm-dataportal): updating poms for 5.12.0-SNAPSHOT development
jenkins
02:23 PM Revision 3f458b2b (cdm-vaadin): updating poms for 5.11.0 branch with snapshot versions
jenkins
02:23 PM Revision 82fd6211 (cdm-vaadin): jenkins bumping cdmlib.version to 5.12.0-SNAPSHOT
jenkins
02:21 PM Revision b0cbc440 (cdmlib): updating poms for 5.12.0-SNAPSHOT development
jenkins
02:00 PM Revision f31fdd6b (cdm-dataportal): ref #8673 Fix description title display on taxon page
Patrick Plitzner
01:15 PM bug #8631 (Closed): ABCD import fails to put new taxa into the classification, create mediaspecim...
Katja Luther
01:00 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
It looks ok in KDE!
The ticket can be closed.
Andreas Kohlbecker
12:25 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Andreas Müller wrote:
> It look ok now. Only change I suggest: let the "Biocase provider for DNA" dropdown start at ...
Andreas Müller
09:55 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
It look ok now. Only change I suggest: let the "Biocase provider for DNA" dropdown start at the same horizontal posit... Andreas Müller
01:00 PM feature request #8667 (Closed): Make Person.orcid editable in TaxEditor
Andreas Müller
12:56 PM feature request #8667 (Resolved): Make Person.orcid editable in TaxEditor
this is fixed Katja Luther
12:54 PM Revision 64090e78 (cdmlib): cleanup
Andreas Müller
12:16 PM Revision 4c0d4268 (cdmlib): cleanup
Andreas Müller
12:15 PM Revision 9449fa3d (cdmlib): ref #8651 useClearExistingDistribution = false as default
Andreas Müller
11:56 AM Revision 91006ade (cdmlib): ref #8651 cleanup DistributionAggregation and remove old computed mar...
Andreas Müller
11:54 AM Revision 18683dc6 (taxeditor): ref #8631: layout issues
Katja Luther
11:37 AM Revision f6a63f8b (cdmlib): ref #8673 CdmLinkSourceBeanProsessor disabled and init strategy for c...
Andreas Kohlbecker
10:57 AM Revision dcc025b4 (taxeditor): use preferencePredicate.EditMapServiceAccessPoint in featureDistri...
Katja Luther
10:38 AM Revision 2f1bb433 (taxeditor): cleanup
Andreas Müller
10:07 AM Revision e6287d4a (cdmlib): avoid NPE in dataholder
Katja Luther
09:59 AM Revision d6dc2032 (cdmlib): smaller issues in abcd import
Katja Luther
09:55 AM Revision 5e751d05 (cdmlib): minor
Katja Luther
09:51 AM Revision b0e71e93 (taxeditor): avoid exception when export config does not have userfriendlyIOName
Katja Luther
09:47 AM Revision 44434863 (cdmlib): add userFriendlyIOName to Dwca Configurator
Katja Luther
07:54 AM Revision 4e506608 (cdm-dataportal): ref #8673 Fix description title display on taxon page
Patrick Plitzner
07:46 AM Revision 79e61daa (cdm-dataportal): ref #8673 Adapt more specific description type
Patrick Plitzner

11/13/2019

12:11 AM Revision c1ede4f8 (cdmlib): ref #8651 implement reuse of distributions in DistributionAggregation
Andreas Müller
10:50 PM Revision 85884141 (cdmlib): ref #8651 further cleanup DistributionAggregation
Andreas Müller
09:55 PM Revision 27dd2015 (cdmlib): fix compile error
Andreas Müller
09:48 PM Revision 0cfec87b (cdmlib): ref #8651 further cleanup DistributionAggregation
Andreas Müller
09:47 PM Revision bd522a58 (cdmlib): cleanup
Andreas Müller
05:26 PM Revision ec44caf9 (cdmlib): ref #8651 cleanup DistributionAggregation
Andreas Müller
05:23 PM Revision 7926167f (cdmlib): cleanup
Andreas Müller
05:21 PM Revision 778d2800 (cdmlib): cleanup ProgressMonitor
Andreas Müller
05:16 PM Revision 2412e7b6 (cdmlib): ref #8673 CdmLinkSourceBeanProsessor proper null handling
Andreas Kohlbecker
05:12 PM Revision f5c38c85 (taxeditor): fix possible NPE
Patrick Plitzner
05:06 PM Revision 3fa32caf (taxeditor): ref #8651 Adapt to finer grained aggregation description type
Patrick Plitzner
04:31 PM Revision 628c6976 (cdmlib): ref #8673 CdmLinkSourceBeanProsessor to serialize CdmLinkSource as Ty...
Andreas Kohlbecker
03:20 PM feature request #8673: Allow OriginalSource to link to other CDM objects
CdmLinkSourceBeanProsessor implemented but cannot test since i can't find data with CdmLinkSource
@Patrick: please...
Andreas Kohlbecker
12:50 PM feature request #8673: Allow OriginalSource to link to other CDM objects
We still need to check if the empty constructor of CdmLinkSource also could be protected. Patrick could you do this? Andreas Müller
03:19 PM Revision 019036d1 (cdmlib): ref #8673 CdmLinkSourceBeanProsessor to serialize CdmLinkSource as Ty...
Andreas Kohlbecker
03:07 PM Revision a7df73f0 (cdmlib): ref #8651 cast failing in LINUX
Andreas Müller
02:59 PM Revision 2a00d0b3 (cdmlib): cleanup
Andreas Müller
02:59 PM Revision f24fb983 (cdmlib): ref #8651 fix missing uuid
Andreas Müller
02:50 PM Revision a914faf1 (cdmlib): ref #8651 Introduce new description type "Aggregated Structured Descr...
Andreas Müller
02:48 PM Revision 8a7e4037 (cdmlib): cleanup
Andreas Müller
02:37 PM feature request #8680 (New): Unify long running tasks framework
Long running task are currently implemented at many places and for multiple purposes.
Some things we could do:
...
Andreas Müller
02:14 PM Revision 8e1870d6 (cdmlib): cleanup
Andreas Müller
02:09 PM task #8651: Unify description aggregation methods (distribution and structured descriptive data)
Andreas Müller wrote:
>
> Before closing we should delete the redundant methods from DescriptiveDataSetService. ...
Patrick Plitzner
01:06 PM task #8651 (Resolved): Unify description aggregation methods (distribution and structured descrip...
We do now have a common base class and also the LongRunningTaskService used only 1 method (with config as parameter).... Andreas Müller
01:48 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
I made some changes myself. Looks fine on Linux. Please test on windows. Patrick Plitzner
12:35 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
@Patrick could you have another look, whether it looks better now. It is difficult to check for me because with windo... Katja Luther
01:47 PM Revision d36d2eb8 (taxeditor): ref #8631 Fixed layout + merged constructors
Patrick Plitzner
01:27 PM Revision c68519c0 (cdmlib): ref #8651 Remove aggregation methods(now in DescriptionAggregationBase)
Patrick Plitzner
01:03 PM feature request #8253: Authors for genus autonyms
Katja Luther wrote:
> Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes...
Katja Luther
01:01 PM task #8679 (Closed): Further unify description aggregation methods
Common base classes already exist. Further work might be:
* ~~use the same calls for "aggregateWithinTaxon", "aggr...
Andreas Müller
12:59 PM feature request #8470 (Closed): Handle username constraints in user and group editing
Seems to work as expected Andreas Müller
12:53 PM feature request #7019 (Closed): sort import menu
Works as expected. Andreas Müller
09:14 AM feature request #7019 (Resolved): sort import menu
Patrick Plitzner
12:27 PM task #8678 (New): Update Fauna Europaea Master Db for common names with area = North America and ...
Some common names had "English-United States" as language and where imported with language = English and Area = North... Katja Luther
12:22 PM Revision 67ab92f3 (cdm-dataportal): ref #8673 Adapt portal to CdmSource eager loading
Patrick Plitzner
11:32 AM Revision f4c1a988 (cdmlib): add default priority to distribution aggregation webservice
Andreas Müller
11:32 AM Revision d1292203 (cdmlib): ref #8651 always add description type to aggregated descriptions
Andreas Müller
11:32 AM Revision 7841cf62 (cdmlib): cleanup
Andreas Müller
11:17 AM Revision 453261d0 (cdmlib): ref #8673 Extend property path for CdmSources
Patrick Plitzner
11:15 AM Revision 1e2fd81a (cdmlib): ref #8673 make cdmSource Eager to avoid LIEs
Andreas Müller
10:42 AM Revision 065e965b (cdm-dataportal): ref #8673 Adapt portal to CdmSource for aggregation clones
Patrick Plitzner
10:30 AM Revision c32e83c4 (cdmlib): ref #8673 Extend property path for CdmSources
Patrick Plitzner
08:37 AM feature request #6337 (Rejected): simple web ui to trigger the transmission engine distribution
I also agree Andreas Kohlbecker
08:36 AM feature request #6337: simple web ui to trigger the transmission engine distribution
Norbert wrote:
I agree that TaxEditor is the preferred place to run aggregation, see no need for an implementation...
Andreas Kohlbecker
08:35 AM Revision 4eedd13b (taxeditor): ref #8651 Adapt to cdmlib aggregation configuration
Patrick Plitzner

11/12/2019

11:46 PM Revision 67146e56 (cdmlib): cleanup
Andreas Müller
11:46 PM Revision 58ea183c (cdmlib): ref #8651 smaller changes to distribution accumulation webservice
Andreas Müller
11:32 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
Shouldn't we rename the parameter to authorshipCache in the service layer methods. Because that is what it is. Andreas Müller
09:05 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
no worries, it was fixed already when I created the ticket. I only had no time to commit and push. Andreas Kohlbecker
09:03 PM bug #8676 (Resolved): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
Applied in changeset commit:cdmlib|83c72818d2e637f56f3e956c99cb0e6c1e508cbd. Andreas Kohlbecker
06:10 PM bug #8676: TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
Why is this in 5.11. Please fix immediately if you want to keep it here. Otherwise move. Andreas Müller
05:37 PM bug #8676 (Closed): TaxonDaoHibernateImpl.countTaxaByName misses parameter authorship
The find method corresponding to `countTaxaByName(Class <? extends TaxonBase> clazz, String uninomial, String infrag... Andreas Kohlbecker
11:08 PM Revision 9d192006 (cdmlib): ref #8651 register UUID lists for distribution accumulation webservice
Andreas Müller
11:08 PM Revision 39c4cced (cdmlib): cleanup
Andreas Müller
09:03 PM Revision f31f3e26 (cdmlib): updating jetty microversion in launcher
Andreas Kohlbecker
09:03 PM Revision 83c72818 (cdmlib): fix #8676 adding authorship parameter to countTaxaByName
Andreas Kohlbecker
06:36 PM feature request #6337: simple web ui to trigger the transmission engine distribution
Andreas (and maybe Norbert, Eckhard). Can you please decide if this is still needed at all. I guess if a TaxEditor UI... Andreas Müller
06:28 PM feature request #6352: Add Transmission Engine trigger to Admin menu
This is more or less a duplicate for #8677. There it is defined as called in "Set subtree" menu.
Probably we need di...
Andreas Müller
06:16 PM task #8651 (In Progress): Unify description aggregation methods (distribution and structured desc...
This is basically done but there are mutliple open tasks Andreas Müller
06:14 PM feature request #5176 (Resolved): TransmissionEngineDistribution can run on selected taxa
This should be fixed. Andreas Müller
06:13 PM bug #4134 (Resolved): Transmissionengine Distribution seems to miss distributions for higher Taxa
I set to resolved as I guess it is fixed. But needs to be reviewed. Andreas Müller
06:09 PM feature request #8470: Handle username constraints in user and group editing
I guess this is for review Andreas Müller
11:37 AM feature request #8470: Handle username constraints in user and group editing
Andreas Müller wrote:
> Also in the "New" dialog there is a message "Input cannot be empty". Also here further infor...
Katja Luther
11:36 AM feature request #8470 (Resolved): Handle username constraints in user and group editing
Andreas Müller wrote:
> Can you please leave a message how exactly you changed the issue discussed in note 7 and 8. ...
Katja Luther
10:53 AM feature request #8470: Handle username constraints in user and group editing
Also in the "New" dialog there is a message "Input cannot be empty". Also here further information on the allowed cha... Andreas Müller
10:52 AM feature request #8470: Handle username constraints in user and group editing
Can you please leave a message how exactly you changed the issue discussed in note 7 and 8. The discussion was not en... Andreas Müller
10:49 AM feature request #8470: Handle username constraints in user and group editing
Andreas Müller wrote:
> Now when creating a new user the bulkeditor is dirty. When NOT saving the bulk editor and af...
Andreas Müller
10:47 AM feature request #8470 (Feedback): Handle username constraints in user and group editing
Now when creating a new user the bulkeditor is dirty. When NOT saving the bulk editor and after reopening the bulk ed... Andreas Müller
06:08 PM feature request #8677 (Closed): Add distribution aggregation to set subtree menu
There is a new long running task "DisributionAggregation" which runs on a TaxonNodeFilter (#8651 and others). It shou... Andreas Müller
04:48 PM Revision c655943d (cdmlib): ref #8651 factory method and base constructor for aggregation configu...
Andreas Müller
03:22 PM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, pane...
Die Umfrage ist abgeschlossen und ausgewertet (attachment:Taxeditor-Terms-Poll-2019.pdf):
-----
Hallo zusammen,
...
Andreas Kohlbecker
03:21 PM Revision a51edae3 (cdmlib): ref #8651 unify invocation call in LongRunninTasksService
Andreas Müller
03:00 PM Revision 140a83b3 (taxeditor): ref #8470: change null to empty in message
Katja Luther
02:54 PM Revision 768595a5 (taxeditor): ref #8350: avoid IllegalArgumentException
Katja Luther
02:51 PM Revision e116bd58 (taxeditor): fix NPE in StoreUtil
Katja Luther
02:37 PM Revision a2dd1526 (cdmlib): ref #8651 use explicit conifguration for structured descriptions
Andreas Müller
02:27 PM Revision 68c9d8e4 (taxeditor): Rename menu entry for DDS navigator
Patrick Plitzner
01:45 PM Revision 99a9422e (taxeditor): ref #8667: minor
Katja Luther
01:35 PM Revision a02567b7 (taxeditor): layout issues for create taxonnode wizard
Katja Luther
01:35 PM Revision 755b2883 (taxeditor): ref #8667: smaller layout issues for orcids
Katja Luther
01:35 PM Revision df2a4c41 (taxeditor): ref #8667: l10n for orcid element
Katja Luther
01:35 PM Revision 95622e27 (taxeditor): ref #8470: user/group creation string localization
Katja Luther
01:35 PM Revision 5dd36b69 (taxeditor): ref #8470: user/group creation continue
Katja Luther
01:35 PM Revision 905fdec1 (taxeditor): ref #8631: same layout for unit id and nomenclatural code combobox
Katja Luther
01:03 PM Revision 7f601c27 (taxeditor): ref #8651 Use unified aggregation class for matrix aggregation
Patrick Plitzner
01:02 PM Revision 5f993e31 (taxeditor): ref #7019 Fix menu sort order of navigation context menu
Patrick Plitzner
12:04 PM bug #8675: Make Ranks sortable by natural order
Best place might be the Names-Ranks preference page Andreas Müller
12:03 PM bug #8675 (New): Make Ranks sortable by natural order
This was already available in past but seems being lost in current version. Andreas Müller
11:42 AM bug #8628 (Closed): Add ORCID as person identifier
this message is easier to understand how the identifier should look like Katja Luther
09:40 AM bug #8628 (Resolved): Add ORCID as person identifier
I adapted the error messages a bit. Can you please review again? Andreas Müller
11:40 AM bug #8664 (Closed): SQLGrammarException when opening Specimen selection
I tested again and it seems to work now. Andreas Müller
11:34 AM feature request #8253 (Resolved): Authors for genus autonyms
By the way the parser for me now also works with names like "Achnanthes Bory sect. Achnanthes". So can you please che... Andreas Müller
11:30 AM feature request #8253: Authors for genus autonyms
Katja Luther wrote:
> Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes...
Andreas Müller
11:19 AM Revision 5394c18a (cdmlib): Fix potential class cast exception
Patrick Plitzner
11:19 AM Revision 46278434 (cdmlib): ref #8651, #8467 Use unified aggregation class for matrix aggregation
- Link specimen descriptions as sources as direct CDM entities Patrick Plitzner
10:56 AM Revision 6d1c29e8 (taxeditor): ref #8470: user/group editor should not be dirty after creating ne...
Katja Luther
10:38 AM feature request #7019: sort import menu
Kannst du dann noch umbenennen: ABCD => ABCD file; Excel Normal Explicit Taxa => Exel Normal Explicit; RIS Referenze... Andreas Müller
10:37 AM feature request #7019: sort import menu
Andreas Müller wrote:
> It seems to depend on experimental being switcht on or not. In later case the old menu appea...
Andreas Müller
10:24 AM feature request #7019: sort import menu
It seems to depend on experimental being switcht on or not. In later case the old menu appears. Andreas Müller
10:02 AM feature request #7019: sort import menu
I still get the old menu no matter what I do. I deleted the .metadata folder, I downloaded a completely new TaxEditor... Andreas Müller
09:39 AM Revision e82373d1 (cdmlib): ref #8628 Improve error messages for ORCID parsing
Andreas Müller
09:26 AM Revision 00fafe2a (cdmlib): ref #8651 remove MarkerType.Computed where possible
Andreas Müller
09:25 AM Revision c597851f (cdmlib): cleanup
Andreas Müller
08:34 AM Revision 291ea3f3 (cdmlib): ref #8651 fix failing tests due to order of aggregation
Andreas Müller
01:51 AM Revision 3a97a754 (cdmlib): ref #8651 remove some comments and handle AggregationMode correctly
Andreas Müller
01:40 AM Revision d062baaf (cdmlib): ref #8651 fix failing tests due to use of old description markers
Andreas Müller
01:39 AM Revision 7c03912b (cdmlib): ref #8651 merge area and rank aggregation for DistributionAggregation
Andreas Müller

11/11/2019

12:46 AM Revision 406d4d96 (cdmlib): fix max rank in DwcaExportController
Andreas Müller
12:45 AM Revision 3b1c92ca (cdmlib): ref #5176 add all taxon node filter attributes to distribution aggreg...
Andreas Müller
12:44 AM Revision 5c148b4e (cdmlib): ref #8651 more specific description type for DistributionAggregation
Andreas Müller
11:48 PM Revision 3807d9cb (cdmlib): cleanup
Andreas Müller
11:46 PM Revision 6be3adaa (cdmlib): ref #5176, ref #8651 make DistributionAggregation treeIndex based and...
Andreas Müller
11:38 PM feature request #4366: Transmissionengine Distribution: implement rules for source references
From AG:
The original BM Transmission Engine was handled references ONLY for the Med_Check_List 2 use cases. For E...
Andreas Müller
11:38 PM task #8674: configure cdm-server docker image to run with jemalloc
the new docker image is now based on ubuntu:bionic since jemalloc in alpine Linux fails with segfault.
Therefore I ...
Andreas Kohlbecker
11:33 PM task #8674 (Resolved): configure cdm-server docker image to run with jemalloc
Applied in changeset commit:cdm-server|a9e82e311a06d536699eefabdf13b89fbb8e6220. Andreas Kohlbecker
02:41 PM task #8674 (Closed): configure cdm-server docker image to run with jemalloc
Andreas Kohlbecker
11:33 PM Revision a9e82e31 (cdm-server): fix #8674 docker image based on ubuntu:bionic with openjdk8 and j...
Andreas Kohlbecker
11:31 PM Revision 3fe716be (cdm-server): gitignore
Andreas Kohlbecker
02:04 PM feature request #8667: Make Person.orcid editable in TaxEditor
Please add space after "ORCID won't be saved!" , before the real error message. Andreas Müller
02:01 PM feature request #8667 (Feedback): Make Person.orcid editable in TaxEditor
The error message does not always have enough space
![](picture969-1.png)
Andreas Müller
12:39 PM feature request #8667 (Resolved): Make Person.orcid editable in TaxEditor
The field is added to the editor. please review. Katja Luther
01:58 PM feature request #8673: Allow OriginalSource to link to other CDM objects
Can you please review?
Please also have in mind that webservices should not deliver the full cdmobject and maybe e...
Andreas Müller
01:52 PM bug #8631 (Feedback): ABCD import fails to put new taxa into the classification, create mediaspec...
So the layout still needs some update for linux, I guess. Andreas Müller
11:08 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
This is how it looks for me. Started the editor from the IDE.
![](picture468-1.png)
Patrick Plitzner
12:59 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
configuring the test server to use `jemalloc` instead of `malloc?` drastically reduced the native memory overhead:
...
Andreas Kohlbecker
12:50 PM bug #8628: Add ORCID as person identifier
This is difficult because multiple formats are possible (with http, https, only orcid.org or completely missing all p... Andreas Müller
11:06 AM bug #8628 (Feedback): Add ORCID as person identifier
Could you add an example in the exception message to show how it should look like. And that an x at the end is possib... Katja Luther
12:37 PM feature request #8253 (Feedback): Authors for genus autonyms
Creating a section Achnanthes sect. Achnanthes and adding an author also results in Achnanthes sect. Achnanthes Bory,... Katja Luther
12:32 PM feature request #8470: Handle username constraints in user and group editing
please review Katja Luther
12:12 PM Revision c1217ecf (cdmlib): ref #8673 Fix NPE for OriginalSourceBase.getCdmSource
Andreas Müller
11:14 AM feature request #7019: sort import menu
Tried this morning. Seems to work. Please download and try again. Patrick Plitzner
11:02 AM Revision 11761cac (taxeditor): Externalize fragment IDs
Patrick Plitzner
11:02 AM Revision 39913f14 (taxeditor): Add constant for term search to default perspective
Patrick Plitzner
10:49 AM Revision a704339f (taxeditor): ref #8667: add orcid to person detail element - continue
Katja Luther
10:18 AM Revision b2e5f9bf (taxeditor): ref #8667: add orcid to person detail element
Katja Luther
09:47 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
mail Inan Erdogan:
ich glaube das passiert bei mir fast ausschliesslich, wenn ich entweder im Hauptansichtsfeld de...
Katja Luther
09:37 AM bug #4134: Transmissionengine Distribution seems to miss distributions for higher Taxa
AM:
Ja, ich habe dann später auch festgestellt, dass die Aggregation bis zum Tribus in dem Fall gewünscht war. Dah...
Andreas Müller
09:28 AM bug #4134 (In Progress): Transmissionengine Distribution seems to miss distributions for higher Taxa
NK:
Vor eine Neuaggregation können und sollten die Neuberechnungen auf Subtribus- und Tribus-Ebene gelöscht werden...
Andreas Müller
09:37 AM Revision cb45e05b (taxeditor): ref #8631: layout issues in abcd import wizard page and refresh of...
Katja Luther

11/10/2019

12:30 PM Revision c8c05549 (cdmlib): cleanup
Andreas Müller
12:30 PM Revision 186cf7ed (cdmlib): ref #8673 add Cascade.Delete and orphanRemoval and handle getter/sett...
Andreas Müller

11/09/2019

06:37 PM Revision 3aa37a25 (cdmlib): ref #8651 remove unnecessary dependency DistributionAggregation in De...
Andreas Müller
06:14 PM Revision d68e1b58 (cdmlib): ref #8651 try to fix failing repository dependency injection in Descr...
Andreas Müller
05:55 PM Revision ade857dd (cdm-vaadin): fix #8673 update Vaadin test DB to CdmLinkSource changes
Andreas Müller
05:54 PM Revision 5e7c747f (taxeditor): fix #8673 update TaxEditor test DB to CdmLinkSource changes
Andreas Müller
05:52 PM Revision 8049524f (cdmlib): ref #8651 try to fix failing repository dependency injection in Descr...
Andreas Müller
05:51 PM Revision b45755b5 (cdmlib): cleanup
Andreas Müller
05:43 PM feature request #8673 (Resolved): Allow OriginalSource to link to other CDM objects
Applied in changeset commit:cdmlib|93ad7e545dc77e63b68e434c62c8560a68bb9dfb. Andreas Müller
12:33 PM feature request #8673 (Closed): Allow OriginalSource to link to other CDM objects
Currently links are only available to Reference and (external) URIs. However, especially for adding sources to aggreg... Andreas Müller
05:41 PM Revision 93ad7e54 (cdmlib): fix #8673 Add CdmLinkSource to OriginalSourceBase
Andreas Müller
01:14 PM Revision 8bbb7d89 (cdmlib): ref #8651 try to fix compile error in DescriptionListController
Andreas Müller
12:42 PM Revision a7e34ddd (cdmlib): cleanup
Andreas Müller
12:41 PM Revision 3bab771f (cdmlib): ref #8651 remove @Service annotation from DistributionAggregation and...
Andreas Müller
12:23 PM feature request #4366 (Feedback): Transmissionengine Distribution: implement rules for source ref...
As this ticket is E+M specific, discusses only specific cases and neglects also to mention discussion from #2625 (att... Andreas Müller
11:40 AM feature request #4366: Transmissionengine Distribution: implement rules for source references
Andreas Kohlbecker wrote:
> Replying to [[comment1|a.kohlbecker]]:
>
> > Hallo Andreas,
>
> >
>
> > dem l...
Andreas Müller
12:17 PM task #8672 (In Progress): Source handling during (distribution) aggregation
There are different possibilities to handle sources during aggregation of factual (distribution and structured descri... Andreas Müller
11:24 AM bug #8670: Unwanted distribution aggregation/display on 2 levels
> NK:
> Frage: wenn in allen Fällen auf Level 3 aggregiert werden muss (**ist das so?**), lässt sich dann nicht weni...
Andreas Müller
10:54 AM task #8671: Distribution in E+M (BM) on different levels
SQL to find such cases in E+M BM:
~~~
SELECT occ.SummaryStatus, n.FullNameCache, pt.PTRefFk, n.NameCache
FROM em...
Andreas Müller
10:08 AM task #8671: Distribution in E+M (BM) on different levels
Eine Lösung für dieses Problem könnte sein, dass man nicht (wie in #8670) die Areale aufwärts aggregiert sondern abwä... Andreas Müller
09:28 AM task #8671 (In Progress): Distribution in E+M (BM) on different levels
We may need to solve the below problem in Euro+Med (Berlin Model) with new functionality in CDM.
=====
AM:
I...
Andreas Müller

11/08/2019

12:29 AM bug #8670: Unwanted distribution aggregation/display on 2 levels
It needs to be decided if this is an aggregation issue or a display (output) issue. Andreas Müller
12:29 AM bug #8670 (Resolved): Unwanted distribution aggregation/display on 2 levels
NK:
Der Schritt der Aggregation auf der Ebene des primären Taxons von level 3 auf level 4 führt:
(a) zu einer un...
Andreas Müller
11:43 PM bug #4134 (Feedback): Transmissionengine Distribution seems to miss distributions for higher Taxa
Das ist für mich nicht logisch. Auch wenn die Aggregation über die Areale auch auf höheren Rangstufen erfolgte (was i... Andreas Müller
10:12 PM bug #8669 (New): Permission problems when caches are updated without permission
The problem is described in #8650 . There a person title had changed and therefore the team titlecache was updated du... Andreas Müller
10:08 PM bug #8650: PermissionDenied Exception for Teams when editing distributions
I remove from milestone as this is a pure data related fix.
We need a new ticket for handling the cache update pro...
Andreas Müller
09:05 PM Revision ed09c048 (cdmlib): cleanup
Andreas Müller
09:05 PM Revision 535525fc (cdmlib): fix #8628 update cdm.map.ser to Person.orcid
Andreas Müller
08:58 PM feature request #8668 (New): Show Person.orcid in dataportal
... but for this we first need an Person or Agent page I guess. So this ticket is blocked.
See https://support.orc...
Andreas Müller
08:56 PM feature request #8667 (Closed): Make Person.orcid editable in TaxEditor
this should be done similar to DOI in Reference class Andreas Müller
08:54 PM bug #8628: Add ORCID as person identifier
This should be fixed now. Please review. Andreas Müller
08:47 PM bug #8628 (Resolved): Add ORCID as person identifier
Applied in changeset commit:cdmlib|6e1b0ff9bdf5c8e20f1df4e5542aa44554252a81. Andreas Müller
08:51 PM Revision 9d0322b2 (cdm-vaadin): fix #8628 update Vaadin test DB to Person.orcid
Andreas Müller
08:50 PM Revision 58a6ce02 (taxeditor): fix #8628 update TaxEditor test DB to Person.orcid
Andreas Müller
08:47 PM Revision 4fb5b361 (cdmlib): cleanup
Andreas Müller
08:46 PM Revision 6e1b0ff9 (cdmlib): fix #8628 add ORCID as person identifier
Andreas Müller
08:43 PM Revision 6119597f (cdmlib): cleanup
Andreas Müller
04:52 PM bug #8666 (New): Login fails if classification can not be loaded
If the sortindex of a root taxon is destroyed the classification can not be loaded.
Loading classification is curr...
Andreas Müller
03:20 PM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors
in context menu Andreas Müller
03:14 PM feature request #8253: Authors for genus autonyms
Very strange, it seems to work with Achnanthes Bory subg. Achnanthes but not with Achnanthes Bory sect. Achnanthes. T... Andreas Müller
02:16 PM feature request #8253: Authors for genus autonyms
Hm, strange, it still doesn't seem to work. Though there is a test with the exact same string "" in NonViralNameParse... Andreas Müller
01:26 PM feature request #8253: Authors for genus autonyms
should be fixed now Andreas Müller
01:24 PM feature request #8253 (Resolved): Authors for genus autonyms
Applied in changeset commit:cdmlib|6ef5a0b16df87d2bd76e8e14cc714cd845f17366. Andreas Müller
12:14 PM feature request #8253: Authors for genus autonyms
OK, the problem is I used parseFullName in NonViralNameParserImplTest. But the editor use parseReferencedName I guess... Andreas Müller
10:49 AM feature request #8253 (Feedback): Authors for genus autonyms
when entering Achnanthes Bory sect. Achnanthes in NameEditor the rank and epithets are not parsed correctly.
The e...
Katja Luther
03:06 PM bug #8429: Rename DeterminationEvent_Reference.setOfReferences_id
Andreas Müller wrote:
> Please review.
Andreas Müller
03:05 PM feature request #8441: Add FeatureState class
Can you still remove? Did you try to remove things? So no orphan-removal issues? Andreas Müller
03:04 PM feature request #8398 (Closed): Add nomenclatural code edition to ruleConsidered
Andreas Kohlbecker wrote:
> excellently implemented, thanks a lot!
>
> I extended the protected constructors in `...
Andreas Müller
02:44 PM feature request #7019 (Feedback): sort import menu
I can't see any difference tried with update and install new version of current nightly.
![](picture714-1.png)
Andreas Müller
12:27 PM feature request #7019 (Resolved): sort import menu
Applied in changeset commit:taxeditor|708b6366b5bba1a1669243d3f7145a1967258e04. Patrick Plitzner
11:42 AM feature request #7019: sort import menu
We decided to use "Specimen online" Andreas Müller
11:07 AM feature request #7019: sort import menu
Andreas Kohlbecker wrote:
> "Specimen (webservice)" still is not a very good label, alternatives are
>
> * "Speci...
Andreas Müller
10:54 AM feature request #7019: sort import menu
"Specimen (webservice)" still is not a very good label, alternatives are
* "Specimen (BioCase)"
* "Specimen (glob...
Andreas Kohlbecker
10:47 AM feature request #7019: sort import menu
For now we could simply use separators in the menu to separate specimen from taxa and those from references etc. But ... Andreas Müller
10:44 AM feature request #7019: sort import menu
Also we should rename "Import Specimen" to "Specimen (webservice)" and ABCD to "ABCD file" to give them a bit more se... Andreas Müller
02:42 PM feature request #8470 (Resolved): Handle username constraints in user and group editing
Applied in changeset commit:taxeditor|a0e1ca0573bdcbd929a27e347010da83a453c93c. Katja Luther
02:00 PM feature request #8470: Handle username constraints in user and group editing
hmm, I think users and groups are special. There names are are unique identifiers and should not be changed anymore. ... Andreas Müller
11:18 AM feature request #8470: Handle username constraints in user and group editing
Another question:
at the moment the user is created and saved immediately, but the group is created and saved when...
Katja Luther
02:42 PM Revision a0e1ca05 (taxeditor): fix #8470: create user/group in creator
Katja Luther
02:19 PM bug #8664: SQLGrammarException when opening Specimen selection
I can't currently review as the accoding DB can't be connected to via TaxEditor at the moment. But code looks ok. I w... Andreas Müller
10:28 AM bug #8664 (Resolved): SQLGrammarException when opening Specimen selection
Patrick Plitzner
01:24 PM Revision 5f582094 (cdmlib): cleanup
Andreas Müller
01:24 PM Revision 6ef5a0b1 (cdmlib): fix #8253 fix problem with infrageneric autonyms full reference parsing
Andreas Müller
01:23 PM Revision dfd3521b (taxeditor): ref #8470: check name by regex before creating
Katja Luther
12:32 PM Revision e4101b39 (taxeditor): fix #7019 fix menu string
Patrick Plitzner
12:27 PM Revision 708b6366 (taxeditor): fix #7019 sort import menu
Patrick Plitzner
11:00 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Andreas Müller wrote:
> Can you please leave a note if this is easy to fix? Otherwise please move to new ticket as t...
Katja Luther
10:57 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Can you please leave a note if this is easy to fix? Otherwise please move to new ticket as the layout is not really p... Andreas Müller
10:42 AM Revision 9021b90c (taxeditor): ref #8410: fix NPE
Katja Luther
10:35 AM feature request #8410 (Closed): Add nomenclatural code edition to ruleConsidered in TaxEditor
It looks better now. I think we can close the ticket. Andreas Müller
10:26 AM Revision fab3ab30 (taxeditor): ref #8450 Show data set navigator menu in taxon navigator menu sec...
Patrick Plitzner
10:25 AM Revision 46a006fa (cdmlib): ref #8450 Fix SQLGrammarException when no taxa could be found
Patrick Plitzner
10:20 AM Revision 6448502c (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxedito...
Katja Luther
10:19 AM Revision 739dc887 (taxeditor): ref #8470: exception handling also for groups
Katja Luther
10:04 AM Revision 7bbfb091 (taxeditor): ref #8410: indent only for label -continue
Katja Luther
09:50 AM Revision c127b2b6 (taxeditor): ref #8410: indent only for label
Katja Luther
09:42 AM bug #8632 (Closed): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in...
Katja Luther
09:14 AM feature request #8613 (Closed): For distribution editor default reference should be used also whe...
Seems to work now Andreas Müller

11/07/2019

10:19 PM bug #8664: SQLGrammarException when opening Specimen selection
I guess an empty list was the reason here. Isn't this fixed yet? If not I guess it is very easy to fix and we should ... Andreas Müller
03:56 PM bug #8664 (Closed): SQLGrammarException when opening Specimen selection

… for „Test WorkingSet“ in MatrixEditor

~~~
login : admin
editor version : 5.11.0.201911041248
serve...
Patrick Plitzner
05:12 PM feature request #8613 (Resolved): For distribution editor default reference should be used also w...
Katja Luther wrote:
> Andreas Müller wrote:
> > It still does not work if a source existed already before opening t...
Katja Luther
05:00 PM feature request #8613 (In Progress): For distribution editor default reference should be used als...
Andreas Müller wrote:
> It still does not work if a source existed already before opening the DistrEditor for the gi...
Katja Luther
03:43 PM feature request #8613 (Feedback): For distribution editor default reference should be used also w...
It still does not work if a source existed already before opening the DistrEditor for the given record. Please test i... Andreas Müller
09:10 AM feature request #8613 (Resolved): For distribution editor default reference should be used also w...
Andreas Müller wrote:
> Does not work for me yet. The reference field is still empty if I selected a base source and...
Katja Luther
05:11 PM Revision ca9d00b6 (taxeditor): ref #8613: send event to update details view when set default source
Katja Luther
03:55 PM bug #8663 (Duplicate): LIE when trying to save a tree node

I tried to edit “Character Tree Test”-“second test structure third property” node in Character node editor.
Befo...
Patrick Plitzner
03:53 PM bug #8662 (Closed): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon i...
… im Taxon filter als Kontextmenü. Auch wenn noch gar kein Taxon dort angezeigt wird.

Auch wenn Taxa existier...
Patrick Plitzner
03:52 PM feature request #8661 (Closed): "New DataSet" should ask for label and then open the dataset
… im Descriptive Data Set Navigator sollte den Descriptive Data Set Editor öffnen, damit das Dataset oder zumindest s... Patrick Plitzner
03:51 PM feature request #8642 (Closed): Add tree editor for rank, NamedArea and PresenceAbsence
Generic term tree menu creation moved to new ticket #8660. Also handling of not allowed duplicates #8655.
Close th...
Andreas Müller
10:24 AM feature request #8642 (Resolved): Add tree editor for rank, NamedArea and PresenceAbsence
Order is fixed.
Create new ticket for remaining issues -> #8655
Patrick Plitzner
03:50 PM bug #8660 (New): Generic menu creation for Term trees
Currently the term tree menu is hardcoded. It should be implemented generically as the term (vocabulary) menu.
Thi...
Andreas Müller
03:46 PM feature request #8648 (Closed): Simplify name details view configuration
Works as expected now. Andreas Müller
03:40 PM feature request #8470 (Feedback): Handle username constraints in user and group editing
Please also implement for groups. Andreas Müller
03:39 PM Revision 55236f7f (cdm-dataportal): ref #8596 harmonizing documentation
Andreas Kohlbecker
03:37 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
I don't insist in keeping this function in the ABCD import. I only feared that we lose valuable functionality. theref... Andreas Kohlbecker
03:27 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
I suggest to close this ticket and if needed open a new ticket to discuss the necessity (and best implementation) of ... Andreas Müller
03:09 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
As mentioned by Katja before I do not understand why we need it. It is work to keep such things running and as Katjas... Andreas Müller
01:51 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Katja Luther wrote:
...
> ... But when the problems solved we can reintegrate it to the file import. It is only...
Andreas Kohlbecker
01:33 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Kohlbecker wrote:
> Katja Luther wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
> > >...
Katja Luther
01:23 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > Andreas Kohlbecker wrote:
> > >...
Andreas Kohlbecker
01:14 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > Andreas Kohlbecker wrote:
> > > Patrick Plitzner wrote:
>...
Katja Luther
01:05 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Patrick Plitzner wrote:
> Andreas Kohlbecker wrote:
> > Patrick Plitzner wrote:
> > > We used the specimen search ...
Andreas Kohlbecker
12:39 PM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > We used the specimen search for DNA in the Taxeditor. This ...
Patrick Plitzner
11:49 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Andreas Müller wrote:
> why did you give this to Lutz? I guess this was a mistake?
OOPS! Thank you for fixing this.
Andreas Kohlbecker
11:47 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
why did you give this to Lutz? I guess this was a mistake? Andreas Müller
11:30 AM bug #8632 (Feedback): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected ...
Andreas Kohlbecker
11:28 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Patrick Plitzner wrote:
> We used the specimen search for DNA in the Taxeditor. This still works so no problems from...
Andreas Kohlbecker
10:13 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
So AK, you may decide if this ticket can be fully closed. But I guess so. Andreas Müller
10:05 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
We used the specimen search for DNA in the Taxeditor. This still works so no problems from my side Patrick Plitzner
03:24 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
Andreas Kohlbecker wrote:
> There is still a problem related to this issue.
>
> The TaxonNavigator is not being r...
Andreas Müller
03:22 PM bug #8659 (New): Taxon navigator: not refreshed after ABCD file import
Copied from #8582
The TaxonNavigator is not being refreshed after importing an ABCD file, newly created classifica...
Andreas Müller
03:19 PM feature request #8596 (Closed): Add a list of descriptions to the taxon page
Patrick Plitzner
01:48 PM feature request #8596: Add a list of descriptions to the taxon page
from my perspective can this ticket be closed. Andreas Kohlbecker
01:46 PM feature request #8596: Add a list of descriptions to the taxon page
Patrick Plitzner wrote:
> Andreas K.: You mentioned that it is possible to assign **weights** to these blocks. Wit...
Andreas Kohlbecker
12:36 PM feature request #8596: Add a list of descriptions to the taxon page
But the tree that I mentioned can be used for both the block here and for the "description detail page" (#8595) Andreas Müller
12:34 PM feature request #8596: Add a list of descriptions to the taxon page
Patrick Plitzner wrote:
> Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here...
Andreas Müller
12:30 PM feature request #8596: Add a list of descriptions to the taxon page
Wait, you are going in the wrong direction. We are **not** talking about FeatureTrees here. Just about the order of T... Patrick Plitzner
12:09 PM feature request #8596: Add a list of descriptions to the taxon page
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> Can you please explain this a bit more? Is there a Feature tr...
Andreas Müller
11:57 AM feature request #8596: Add a list of descriptions to the taxon page
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Do we need a configuration method to define the "Description ...
Andreas Müller
11:45 AM feature request #8596: Add a list of descriptions to the taxon page
Andreas Müller wrote:
> Do we need a configuration method to define the "Description (aggregated)" feature tree? Oth...
Andreas Kohlbecker
09:39 AM feature request #8596: Add a list of descriptions to the taxon page
Do we need a configuration method to define the "Description (aggregated)" feature tree? Otherwise it seems to be imp... Andreas Müller
09:22 AM feature request #8596: Add a list of descriptions to the taxon page
Currently only the aggregated descriptions are shown.
What still needs to be implemented is the sort order of this...
Patrick Plitzner
03:18 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
should we put back to "In Progress" or/and move to next milestone? Andreas Müller
12:52 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
after applying the jdk8 memleak fix the effect on the cdm-server is not as good as for the cdmlib-remote-webapp alone... Andreas Kohlbecker
02:32 PM feature request #8595: Create description detail page
Code review notes:
* description.inc#1179 : `$enclosing_tag = cdm_feature_block_element_tag_name($feature_block_se...
Andreas Kohlbecker
12:46 PM feature request #8595: Create description detail page
Added specs from additivity wiki Patrick Plitzner
12:05 PM feature request #8595: Create description detail page
There are still many open issues (most of them discussed in additivity). So we need a follow up ticket. This ticket a... Andreas Müller
11:38 AM feature request #8595 (Feedback): Create description detail page
It is hard to review this ticket since the requirements to the layout of the page are missing in the ticket. Please a... Andreas Kohlbecker
09:20 AM feature request #8595: Create description detail page
Example: http://test.e-taxonomy.eu/dataportal/preview/campanulaceae/cdm_dataportal/description/dc871867-3d87-4fce-b42... Patrick Plitzner
01:34 PM Revision 93666c75 (cdm-dataportal): ref #8596 changing render hint
Andreas Kohlbecker
01:12 PM Revision 0152a834 (cdm-dataportal): adding annotation to doc
Andreas Kohlbecker
01:09 PM bug #8605 (Worksforme): ClassCastException in Feature editor when adding new Defined Term
I can't reproduce this either, so it seems as if this has been fixed in the context of another task Andreas Kohlbecker
11:34 AM bug #8605: ClassCastException in Feature editor when adding new Defined Term
I tested this with the latest nightly on the mentioned database but could not reproduce this behavior. Patrick Plitzner
12:41 PM bug #8225: Deleting one of two type designations removes both
Andreas Müller wrote:
> I change back version as the preliminary fix was done in 5.6 I think. OK?
+1
Patrick Plitzner
10:16 AM bug #8225: Deleting one of two type designations removes both
I change back version as the preliminary fix was done in 5.6 I think. OK? Andreas Müller
10:10 AM bug #8225 (Closed): Deleting one of two type designations removes both
Created a new ticket for a better fix -> #8654 Patrick Plitzner
12:32 PM feature request #8657 (Closed): Order description element in portal according to CharacterTree
Patrick Plitzner
12:13 PM feature request #8656 (Closed): [DISCUSS] Should only characters be allowed for DescriptiveDataSe...
du filterst in aggregateDescription() nur DescriptionElements die Characters als Feature haben. Das
~~~java
desc...
Patrick Plitzner
11:35 AM feature request #8044 (Resolved): Add "Move to..." menu to term editor
Patrick Plitzner
11:15 AM bug #7143 (Closed): Finish not enabled when unprotecting titleCache in new Person dialog
confirmed! Andreas Kohlbecker
09:08 AM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
this is fixed now. Katja Luther
11:09 AM feature request #8238: Allow interoperability between term trees
Moving to next milestone for remaining issues Patrick Plitzner
10:58 AM feature request #6849 (In Progress): [DISCUSS] How to handle "kind of" term creation in TermEditor
Patrick Plitzner
10:21 AM feature request #6849 (Closed): [DISCUSS] How to handle "kind of" term creation in TermEditor
Closing this old discussion because the project ends. Documentation can be found in the ticket description and in the... Patrick Plitzner
10:51 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
Dump deleted as it was not crucial to understand the problem.
Andreas Kohlbecker
10:37 AM feature request #8467: Save a "snapshot" of the SpecimenDescriptions used for aggregation
moving to additivitiy milestone Patrick Plitzner
10:36 AM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix
moving to additivitiy milestone Patrick Plitzner
10:23 AM feature request #8655 (Duplicate): Handle duplicates in term tree editor
Copied from #8642:
There is one related issue: if you create a new tree, by default "allow duplicates" is false, w...
Patrick Plitzner
10:22 AM bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model ...
moving to next milestone Patrick Plitzner
10:10 AM task #8130: Check if related feature data is cleared when supported facts type is changed
Move to next milestone for remaining discussion Patrick Plitzner
10:09 AM bug #8654 (New): Find a better solution for deleting type designations
Follow up of #8225 Patrick Plitzner
10:07 AM feature request #6774: Implement OWL export
Move to next milestone because this is still considered experimental Patrick Plitzner
10:06 AM feature request #8248: Implement OWL import
Move to next milestone because this is still considered experimental Patrick Plitzner
09:58 AM bug #8533 (Closed): missing collector and fieldnumber in abcd import
> Why did you move it to 5.12. It has status resolved and should therefore be reviewed in 5.11 milestone. If there is... Patrick Plitzner
08:57 AM Revision bbe6c98f (cdm-server): ref #5048 disabling url caching per instance for jdk1.8 to avoid ...
Andreas Kohlbecker

11/06/2019

10:57 PM feature request #8253: Authors for genus autonyms
Please review Andreas Müller
10:34 PM feature request #8253 (Resolved): Authors for genus autonyms
Applied in changeset commit:cdmlib|6d023e406becd840d1d95a88137f1bccb4a73eed. Andreas Müller
10:34 PM Revision b06c96cf (cdmlib): cleanup
Andreas Müller
10:34 PM Revision 6d023e40 (cdmlib): fix #8253 correct parsing and formatting for authors of infra generic...
Andreas Müller
10:09 PM Revision 09a3e42c (cdmlib): cleanup
Andreas Müller
10:06 PM Revision 029fa839 (cdmlib): cleanup
Andreas Müller
06:13 PM bug #5048 (Resolved): cdm-server causes unusual high native memory consumption for jvm
Applied in changeset commit:cdm-server|d81181d86f476634377346f159ea9edcda67ba38. Andreas Kohlbecker
06:08 PM bug #5048 (In Progress): cdm-server causes unusual high native memory consumption for jvm
Andreas Kohlbecker wrote:
> I will now equip edit-test and edit-integration with the caches.xml workaround to disabl...
Andreas Kohlbecker
05:20 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
I will now equip edit-test and edit-integration with the caches.xml workaround to disable url caching... Andreas Kohlbecker
06:13 PM Revision d81181d8 (cdm-server): fix #5048 disabling url caching for jdk1.8 to avoid memleak
Andreas Kohlbecker
05:06 PM Revision 84503131 (taxeditor): ref #8450 Adjust style of literature description to default descri...
Patrick Plitzner
04:03 PM Revision 2cace77b (taxeditor): ref #7143: fix activation of finish button
Katja Luther
03:53 PM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
I would expect that the finish button is enabled after entering text in the TitleCache field only.
This is not y...
Andreas Kohlbecker
03:46 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > * The "Configure Import Dialog" has changed, and has two issues...
Andreas Kohlbecker
03:31 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Katja Luther wrote:
> the nomenclatural code selection page is removed
Did you add a label to the code selection ...
Andreas Kohlbecker
03:17 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > There are still some problems which are not yet fixed:
> >
>...
Katja Luther
03:04 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Andreas Kohlbecker wrote:
> There are still some problems which are not yet fixed:
>
> * the taxon is not part of...
Katja Luther
03:02 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
the nomenclatural code selection page is removed Katja Luther
02:57 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
Andreas Kohlbecker wrote:
> There are still some problems which are not yet fixed:
>
> * the taxon is not part of...
Katja Luther
09:23 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
There are still some problems which are not yet fixed:
* the taxon is not part of the classification.
* the speci...
Andreas Kohlbecker
03:02 PM Revision 21850e02 (taxeditor): ref #8631: remove nomenclatural code selection page for file import
Katja Luther
02:54 PM task #8652 (Closed): disentangle confusion when connecting to development cdm instance fails
Katja Luther
02:51 PM task #8652: disentangle confusion when connecting to development cdm instance fails
Andreas Kohlbecker wrote:
> apparently these changes are not causing problems.
>
> @Katja: I think the changes th...
Katja Luther
08:57 AM task #8652: disentangle confusion when connecting to development cdm instance fails
apparently these changes are not causing problems.
@Katja: I think the changes that I made to `ExtReferenceSelecti...
Andreas Kohlbecker
02:49 PM feature request #8648 (Resolved): Simplify name details view configuration
default handling is fixed now and labeling is changed as well. Katja Luther
02:13 PM Revision 161cf0e4 (taxeditor): show report for abcd file import
Katja Luther
01:26 PM Revision b5394068 (cdmlib): adding jvmArgs to the maven jetty plugin config to allow for hasslefr...
Andreas Kohlbecker
01:19 PM Revision 6c8d17c5 (taxeditor): ref #8470: export ConstraintViolationException
Katja Luther
01:06 PM feature request #8454 (Closed): Only allow certain patterns as username and groupname
tested it in Editor and it seems to work (tested ' ', 'ö', '*') Katja Luther
01:03 PM feature request #8470 (Resolved): Handle username constraints in user and group editing
Applied in changeset commit:taxeditor|2579d7d6b01fd0879bee9ab3a7621fbe8aec1009. Katja Luther
01:03 PM Revision 2579d7d6 (taxeditor): fix #8470: handle constraint violation exception for username
Katja Luther
12:14 PM Revision 0c9b9bc2 (taxeditor): ref #8450 Fix order of taxon descriptions in matrix
Patrick Plitzner
11:52 AM Revision ed2341ee (cdmlib): ref #8450 Remove description type labels
Patrick Plitzner
11:03 AM Revision 99310e0d (taxeditor): ref #8648: default handling in name details preference - continue
Katja Luther
10:42 AM Revision 37cff480 (taxeditor): ref #8648: default handling in name details preference
Katja Luther
10:20 AM bug #8653 (Resolved): NullPointerException (NPE) when focusing Taxion Name Editor
Katja Luther
10:18 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
Please remove milestone afterwards. It is an milestone internal bugfix. Andreas Müller
10:17 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
As far as I can see this came with one of the latest changes. Should be easy to fix. Important before release. Andreas Müller
09:42 AM bug #8653: NullPointerException (NPE) when focusing Taxion Name Editor
Attaching dump of the DB: attachment.cdm_caryophyllales_demo_01.sql.bz2 Andreas Kohlbecker
09:35 AM bug #8653 (Resolved): NullPointerException (NPE) when focusing Taxion Name Editor
* I did the same ABCD import of `Arenaria_ABCD_one_unit.xml`
three times
* Then search for Arenaria serpyllifoli*
...
Andreas Kohlbecker
10:19 AM Revision 00a7ae7a (taxeditor): ref #8648: set default for local, label issues
Katja Luther
10:14 AM Revision d2e01dec (taxeditor): ref #8653: fix NPE
Katja Luther
09:29 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
The question in comment 4 is for Patrick, so I am reassigning this ticket Andreas Kohlbecker
09:27 AM bug #8582 (In Progress): Taxon Navigator: Classification label not refreshed & new taxa not visible
There is still a problem related to this issue.
The TaxonNavigator is not being refreshed after importing an ABCD ...
Andreas Kohlbecker
09:18 AM bug #8650 (Closed): PermissionDenied Exception for Teams when editing distributions
this seems to be a problem of updated caches because of the IPNI import. After running the cache updater the problem ... Katja Luther
09:12 AM bug #8630 (Closed): ClassCastException when ABCD import has finished
The problem is no longer reproducible, closing the issue. Andreas Kohlbecker
09:09 AM bug #8634 (Closed): NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurator(...
could no longer reproduce the issue, closing the ticket. Andreas Kohlbecker

11/05/2019

05:39 PM Revision 7ef0f93e (cdmlib): ref #8651 rename TransmissionEngineDistribution to DistributionAggreg...
Andreas Müller
05:14 PM Revision ac2cee48 (cdmlib): ref #8651 fix compile error on linux (3rd try)
Andreas Müller
05:07 PM Revision b997cab9 (cdmlib): ref #8651 minor changes to TransmissionEngineDistribution and moving ...
Andreas Müller
05:02 PM Revision 753627ae (cdmlib): ref #8651 fix compile error on linux (2nd try)
Andreas Müller
04:54 PM task #8652 (Resolved): disentangle confusion when connecting to development cdm instance fails
Applied in changeset commit:taxeditor|2456bd7d10249f074c710ec82344610ec9226b5e. Andreas Kohlbecker
04:53 PM task #8652 (Closed): disentangle confusion when connecting to development cdm instance fails
It can be quite cumbersome to find the cause when connecting to a development cdm instance fails.
To connect this wa...
Andreas Kohlbecker
04:54 PM Revision 2456bd7d (taxeditor): fix #8652 cleaning code related to system property cdm.server.dev....
Andreas Kohlbecker
04:51 PM Revision 8b518049 (cdmlib): ref #8651 fix compile error on linux
Andreas Müller
04:39 PM feature request #8613 (Feedback): For distribution editor default reference should be used also w...
Does not work for me yet. The reference field is still empty if I selected a base source and then added a new source.... Andreas Müller
10:00 AM feature request #8613 (Resolved): For distribution editor default reference should be used also w...
this is implemented, please review Katja Luther
04:36 PM feature request #8648: Simplify name details view configuration
Minor issue: can you rename the menu label in DB prefs from "Name Details View" to "Details View". From the given con... Andreas Müller
04:34 PM feature request #8648 (Feedback): Simplify name details view configuration
"Simple Name Details View" have been renamed as expected.
Also removing the field "Show simplified name detials vi...
Andreas Müller
11:35 AM feature request #8648 (Resolved): Simplify name details view configuration
Applied in changeset commit:taxeditor|b99d2118937199a57d8b4907a76eba41de08ed82. Katja Luther
11:24 AM feature request #8648 (Closed): Simplify name details view configuration
mail AM:
Hallo Katja,

ich frage mich gerade, ob wir das Dropdown Feld „Show simplified name detials view with ...
Katja Luther
04:26 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Now the indentation is for both the label and the textfield. but I think for the label it is enough. Otherwise the la... Andreas Müller
04:22 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
The list should always show an empty entry to make it possible to delete the field. Andreas Müller
04:21 PM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
I tried to change the nom code ICNAFP to ICZN for a name but the list did not change even after reopening the taxon. Andreas Müller
01:42 PM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
sorry, the last changes were not pushed, now they are available in the actual nightly build.
the combo box is fill...
Katja Luther
04:21 PM Revision 27b19ff5 (taxeditor): ref #8450 Show description type icons in factual data view
pplitzner
04:21 PM Revision 34ec2ac2 (cdmlib): Fix potential NPE
pplitzner
04:09 PM Revision 771a5159 (cdmlib): cleanup
Andreas Müller
04:09 PM Revision 7c5cb694 (cdmlib): ref #8651 first base classes for unified description aggregation and ...
Andreas Müller
04:07 PM task #8651 (Closed): Unify description aggregation methods (distribution and structured descripti...
Currentyl we have at least 2 methods/classes handling description aggregation, 1 for distribution data called Transmi... Andreas Müller
03:14 PM bug #8650 (Closed): PermissionDenied Exception for Teams when editing distributions
mail of JP:
Hallo Katja, heute bekomme ich ständig diese Fehlermeldung, woran könnte das liegen? Liebe Grüße Jonat...
Katja Luther
03:12 PM bug #8533: missing collector and fieldnumber in abcd import
Why did you move it to 5.12. It has status resolved and should therefore be reviewed in 5.11 milestone. If there is a... Andreas Müller
02:06 PM bug #8498 (In Progress): Set Flags should show the current status of the flags
as we closed #8282, we can use this ticket to find out why there is a delay between setting the flag and getting the ... Katja Luther
02:04 PM feature request #8486 (Closed): Indicating doubtful state in navigator and add set-doubtful to Se...
Katja Luther
01:56 PM bug #8584 (Closed): Appended phrase should be shown on top level for misapplied names
created new ticket for the layout issues (#8649) and close this ticket Katja Luther
01:54 PM feature request #8649 (New): Layout issues for misapplied name/pro parte synonyms
Some open minor issues (open new ticket if not immediately fixable):
* Add identation (whitespace at beginning) f...
Katja Luther
01:52 PM bug #8531: factual data and media view always opened when opening taxon
this is fixed.
Last problem is when the facts view is closed while the distribution editor is already open, then t...
Katja Luther
01:49 PM feature request #8572 (Closed): Rule considered configurable
Katja Luther
01:47 PM feature request #8624 (In Progress): Add abbrev title cache to search in bulk editor
Katja Luther
01:46 PM bug #8626 (Duplicate): NullPointerException (NPE) on saving Specimen Editor (list)
I could not reproduce the problem, but I still keep #7699, so I close this as duplicate Katja Luther
01:44 PM bug #8631 (Resolved): ABCD import fails to put new taxa into the classification, create mediaspec...
Katja Luther
01:41 PM Revision 37811f53 (taxeditor): ref #8410: add only nomenclatural code editions for code of name t...
Katja Luther
01:39 PM Revision b03087a0 (cdmlib): Fix class cast for streams in aggregation
Patrick Plitzner
01:27 PM Revision 6f4ce4b3 (taxeditor): reopen factual data and media view for taxa when opened before
Katja Luther
01:25 PM bug #8622 (Resolved): Missing specimen Identifier leads to empty brackets in portal
Patrick Plitzner
01:25 PM feature request #8596 (Resolved): Add a list of descriptions to the taxon page
Patrick Plitzner
01:25 PM feature request #8467 (Resolved): Save a "snapshot" of the SpecimenDescriptions used for aggregation
Patrick Plitzner
01:24 PM feature request #8625 (Closed): Add count parameter to StateData
This is already used in the aggregation algorithm and works fine Patrick Plitzner
01:21 PM feature request #8595 (Resolved): Create description detail page
Patrick Plitzner
12:42 PM feature request #5873: Implement rights&roles for TaxEditor distribution editor
I reverted some of the changes because it worked only if the user had rights on a subtree. so move the ticket to 5.12 Katja Luther
12:32 PM Revision 8e675e6a (taxeditor): ref #8239: revert some of the implementations for the next release
Katja Luther
11:34 AM Revision 4963861e (taxeditor): ref #8634: fix NPE and biocase provider for dna search
Katja Luther
11:34 AM Revision b99d2118 (taxeditor): fix #8648: simplify name details view
Katja Luther
10:30 AM Revision 7f287710 (cdmlib): cleanup
Andreas Müller
10:21 AM bug #7143 (Resolved): Finish not enabled when unprotecting titleCache in new Person dialog
Katja Luther wrote:
> Andreas Kohlbecker wrote:
>
> With the actual nightly I cannot reproduce this problem anymo...
Andreas Kohlbecker
10:09 AM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
Andreas Kohlbecker wrote:
> Finish is not enabled when only the title cache is filled with data.
>
> Even after e...
Katja Luther
10:07 AM bug #8632: ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the impo...
Patrick, can you please check if the DNA search is somehow needed in additivity context? I don't expect it but just t... Andreas Müller
09:13 AM bug #8632 (Resolved): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected ...
I removed the possibility to search for DNA for the abcd import because it created exceptions during save and it was ... Katja Luther
09:59 AM Revision 5548f6bc (cdm-dataportal): ref #8595 Fix compile error
Patrick Plitzner
09:56 AM bug #8634 (Resolved): NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurato...
this is fixed Katja Luther
09:53 AM Revision 18110d8c (cdm-dataportal): ref #8595 Fix compile error
Patrick Plitzner
09:39 AM Revision d61e49ac (cdm-dataportal): ref #8595 Show specimen titleCache for source descriptions
Patrick Plitzner
09:24 AM Revision 074747bf (cdm-dataportal): ref #8595 Show characters in italic instead of bold
Patrick Plitzner
09:05 AM Revision 1601d218 (cdm-dataportal): ref #8595 Change header label for aggr. descriptions
Patrick Plitzner
09:01 AM bug #8630 (Resolved): ClassCastException when ABCD import has finished
this is fixed. Katja Luther

11/04/2019

10:06 PM Revision 14e5960f (cdmlib): cleanup
Andreas Müller
10:06 PM Revision 0668c27e (cdmlib): better exception handling in MethodMapper
Andreas Müller
06:31 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
a single cdmlib-remote-webapp instance started from within the eclipse ide:
* RSS: 1297,05078125 MB
* heap used:...
Andreas Kohlbecker
06:07 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
timeseries monitoring of the cdm-server running at edit-test with 6 instances:
![](picture464-1.png)
This diagr...
Andreas Kohlbecker
06:16 PM bug #8633: version 5.11 can not connect to workshop servers
As this was only preliminary in 5.11 beta I remove target version Andreas Müller
06:08 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > One more requirement I forgot to mention before:
> >
> > T...
Andreas Müller
03:35 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Andreas Müller wrote:
> One more requirement I forgot to mention before:
>
> The list should show only those code...
Andreas Kohlbecker
02:54 PM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
One more requirement I forgot to mention before:
The list should show only those codes which fit to the nomenclatu...
Andreas Müller
02:50 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Katja Luther wrote:
> Andreas Müller wrote:
> > Works!
> >
> > Only some layout issues:
> >
> > * ~~Please a...
Andreas Müller
12:48 PM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
Katja Luther
12:05 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Andreas Müller wrote:
> Works!
>
> Only some layout issues:
>
> * ~~Please add identation to label to make cl...
Katja Luther
06:05 PM bug #8626 (Feedback): NullPointerException (NPE) on saving Specimen Editor (list)
I guess we can close this as Duplicate for #7699 (or as Workforme if you don't think #7699 is correct). Please remov... Andreas Müller
03:08 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
I remember that it was possible to reproduce this problem on the day when I wrote this ticket. Today, however, the pr... Andreas Kohlbecker
05:48 PM feature request #8647 (New): Allow selecting named areas, ranks, presence-absence terms from term...
It is possible now to create term trees for Named Areas, Presence-Absence-Terms and Ranks (and ofcourse Features).
...
Andreas Müller
04:31 PM bug #8610 (Closed): tagged_text_extract_nomstatus() fails handling more than one status
Andreas Kohlbecker
04:31 PM bug #8610: tagged_text_extract_nomstatus() fails handling more than one status
=Labiatae Juss., Gen. Pl.: 110. 1789, nom. cons.2, nom. altern.2
is now being displayed correctly in the data port...
Andreas Kohlbecker
04:15 PM bug #7143 (Feedback): Finish not enabled when unprotecting titleCache in new Person dialog
Finish is not enabled when only the title cache is filled with data.
Even after entering the family name it still ...
Andreas Kohlbecker
04:08 PM bug #8605: ClassCastException in Feature editor when adding new Defined Term
I extended the ticket descriptions to clarify what I did Andreas Kohlbecker
04:03 PM Revision 4b428921 (cdm-dataportal): ref #8595 Show count for StateData + only show data when stat...
Patrick Plitzner
03:58 PM bug #8374: Save genus generated for a species with a different reference
removed version as this is a duplicate Andreas Müller
03:44 PM feature request #8226 (Closed): make modifiers for description elements configurable
Yes, this works now (except for the issue to be solved in #8236, but this is another ticket) Andreas Müller
10:49 AM feature request #8226 (Resolved): make modifiers for description elements configurable
now it should work. Katja Luther
03:33 PM Revision 879048dd (taxeditor): ref #8642 Change menu oder for tree editors
Patrick Plitzner
03:33 PM feature request #8572 (Feedback): Rule considered configurable
Personally I would give even more indentation (see #8572#note-8). But this is up to you.
Generally we can close th...
Andreas Müller
01:39 PM feature request #8572 (Resolved): Rule considered configurable
I think all open issues are fixed.
* sub preference have more indent
* the label for "Secundum enabled..." is ful...
Katja Luther
03:24 PM feature request #8642 (Feedback): Add tree editor for rank, NamedArea and PresenceAbsence
Generally works. Menu order please like discussed with Feature and Named Area on top, separator, PresenceAbsence, Ran... Andreas Müller
03:24 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
Refreshing obviously is working again. Thanks for fixing. Andreas Kohlbecker
02:38 PM bug #8639: Reorder Names in Preferences
Andreas Kohlbecker wrote:
> I would prefer seeing these entries in alphabetical order.
Alphabetical order is the...
Andreas Müller
01:21 PM bug #8639: Reorder Names in Preferences
I would prefer seeing these entries in alphabetical order.
For me the new suggestion is harder to comprehend than...
Andreas Kohlbecker
02:02 PM Revision 0b52ae5c (cdmlib): revert changes in abcd import test
Katja Luther
01:39 PM Revision 064a8014 (taxeditor): ref #8450 Fix initial expansion state when refreshing matrix
pplitzner
01:37 PM Revision 2d931a85 (cdmlib): ref #8450 Display StateData.count if present
pplitzner
01:36 PM task #8466 (Closed): Delete FeatureTree tables
Andreas Müller
01:22 PM Revision 54c2a6e5 (taxeditor): ref #8572: some more indention for sub preferences
Katja Luther
01:18 PM Revision 5006c242 (taxeditor): ref #8572: rule considered and code edition enable/disable in pref...
Katja Luther
12:57 PM Revision 9b17d62b (taxeditor): layout issues in name details view preference
Katja Luther
12:48 PM Revision 25364108 (taxeditor): ref #8410: add indent to code edition
Katja Luther
10:57 AM bug #8645: rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
Also Term Tree is not the really correct label as the import is for importing the whole ontology for structured descr... Andreas Müller
10:48 AM Revision 6e9bf931 (taxeditor): ref #8226: fix show modifier
Katja Luther
08:47 AM Revision 29b04663 (cdmlib): minor refactoring
pplitzner

11/03/2019

01:36 PM Revision 6cb0766e (cdmlib-apps): ref #8643 multiple changes to adapt FauEuPesiExport to current s...
Andreas Müller
 

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