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From 10/25/2020 to 11/23/2020

Today

04:06 PM task #9265 (In Progress): Adapt dataportal to new protologue handling
There is no specific web service protologues so only the dataportal needs to be adapted. Andreas Kohlbecker
02:10 PM bug #8833 (Duplicate): distribution editor: Exception when filtering by taxon
tested at the example of http://test.e-taxonomy.eu/cdmserver/cichorieae/app/distribution#!distGrid
could not repro...
Andreas Kohlbecker
01:17 PM bug #9317 (New): Handle NameTypeDesignations on name basis not on homotypic group basis in outputs
WGB:
Bei Gattungen und infragenerischen Rangstufen, die auf anderen Namen basieren wird [...] eine Kombination (Ar...
Andreas Müller
01:04 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
confirmed! the commit:374e76ca85 for #6581 fixes this issue Andreas Kohlbecker
09:56 AM feature request #9316: Add preference to define number of initialy shown elements in drop down menus
As such dropdowns exist at many places we should have a predicate like "number of rows in dropdown" and define which ... Andreas Müller
08:54 AM feature request #9316 (New): Add preference to define number of initialy shown elements in drop d...
mail ERS:
Bei der Auswahl des Distribution Status im Details View habe ich ein scroll-down-Menü, welches mir aber ...
Katja Luther
09:44 AM bug #6757 (Worksforme): AbcdImportWizard has all configurator flags set to false
no, this is fixed in the meantime Katja Luther

11/20/2020

11:09 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBefo...
Andreas Müller
11:08 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
Works as expected Andreas Müller
11:07 PM feature request #9299 (Feedback): Add LSID to author and reference details
In general this is fixed.
Only issues:
* can we move URI above DOI and LSID in Reference Details View.
* can ...
Andreas Müller
11:03 PM bug #6947 (Closed): Incorrect error for LSID field
This works as expected Andreas Müller
10:58 PM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
This is fully fixed Andreas Müller
10:47 PM feature request #9282 (Resolved): Add nomenclatural standing
still need to update in cdmlight Andreas Müller
07:07 PM feature request #9282 (In Progress): Add nomenclatural standing
Andreas Müller
10:44 PM bug #9312 (Resolved): NullPointerException (NPE) in TaxonNamePopupEditor
This should be fixed with the current update script. You need to reinstall a version prior to 5.18.0 and run the upda... Andreas Müller
03:34 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor
this seems to be due to a problem in the model upgrade script which misses to handle NomeclaturalSources correctly an... Andreas Kohlbecker
01:51 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s... Andreas Kohlbecker
10:07 PM feature request #5795 (Resolved): [DISCUSS] Do we need comb. ined. as a nomenclatural status?
Andreas Müller
10:00 PM Revision e394d81a (cdmlib): ref #6591 fix SingleTermRemover
Andreas Müller
09:18 PM Revision 53ffcb3d (cdmlib-apps): ref #9282 adapt app-import to nomenclaturalStanding
Andreas Müller
09:17 PM Revision 88a917f1 (cdmlib-apps): ref #6591 adapt original spelling in app-import
Andreas Müller
07:05 PM Revision af1ee281 (taxeditor): ref #9282 adapt TaxEditor to nomenclatural standing
Andreas Müller
06:32 PM Revision 8d7efe50 (taxeditor): update taxeditor to v5.18.5
Andreas Müller
06:26 PM Revision 358b5ee6 (cdm-vaadin): update vaadin to v5.18.5
Andreas Müller
06:23 PM Revision 14a6a2a9 (cdmlib): fix endSchemaVersion in SchemaUpdater_5184_5185
Andreas Müller
06:20 PM bug #9315 (New): Remove old single source citation and microCitation columns
Include all single sources from #6581
For nomenclatural source it may look like
~~~sql
//#9315 remove ...
Andreas Müller
06:17 PM task #9314 (New): Swap 'is conserved against'
We may think about swapping the direction of "is conserved against" .
This might be an advantage when evaluating t...
Andreas Müller
06:09 PM Revision 1f256a93 (cdmlib): update cached model to 5.18.5
Andreas Müller
06:08 PM bug #8859 (Closed): RegistrationItemNameAndTypeButtons invalid regex pattern
Andreas Kohlbecker
06:08 PM bug #8859 (Resolved): RegistrationItemNameAndTypeButtons invalid regex pattern
Applied in changeset commit:cdm-vaadin|2deb1814c68bd161651f888988f74b04e659a928. Andreas Kohlbecker
06:08 PM Revision 2deb1814 (cdm-vaadin): fix #8859 quoting literal string before use in regex function
Andreas Kohlbecker
06:07 PM Revision 374e76ca (cdmlib): ref #6581 fix update script for nomenclatural sources / nomenclatural...
Andreas Müller
06:07 PM Revision 1712450e (cdmlib): finalize update script vor version 5.18.4
Andreas Müller
06:07 PM Revision 11a38b45 (cdmlib): ref #9311 adapt name parser to updated nom status labels
Andreas Müller
06:07 PM Revision cc259f91 (cdmlib): minor
Andreas Müller
06:07 PM Revision 0f9c4a8b (cdmlib): ref #9311 adapt TermRepresentationUpdater for idInVoc updating
Andreas Müller
06:07 PM Revision 8b5c5b10 (cdmlib): ref #9272 add 5 new nomenclatural status types
Andreas Müller
06:06 PM Revision 9f381a15 (cdmlib): ref #6591 Use TaxonName.nomSource.NameUsedInSource for original spelling
Andreas Müller
06:06 PM Revision f9404583 (cdmlib): ref #9282 adapt NomenclaturalStatusType.csv to nomenclaturalStanding
Andreas Müller
06:06 PM Revision bc07028c (cdmlib): ref #9282 some final fixes and javadoc updates for NomenclaturalStatu...
Andreas Müller
06:06 PM Revision d99f9c25 (cdmlib): ref #9282 adapt some nomenclatural standings in test dataset and fix/...
Andreas Müller
06:06 PM Revision 13e8b7f4 (cdmlib): ref #9311 update labels in test terms
Andreas Müller
06:06 PM Revision a3a00b7a (cdmlib): ref #9282 add NomenclaturalStanding and INomenclaturalStanding and re...
Andreas Müller
06:06 PM Revision 54aff43a (cdmlib): ref #9311 update script for nom status and name rel term label updates
Andreas Müller
06:06 PM Revision 62ea9850 (cdmlib): cleanup
Andreas Müller
05:08 PM feature request #9224 (Closed): openlayers map handles server error per layer and presents a user...
fully solved Andreas Kohlbecker
05:01 PM task #6591 (Resolved): Use name used in source for original spelling
Andreas Müller
04:48 PM bug #9313 (Resolved): LazyInitializationException (LIE) in TaxonNamePopupEditor
please review once #9312 is also solved - needs prior communication with the dev team to check that the data base is ... Andreas Kohlbecker
01:58 PM bug #9313 (Resolved): LazyInitializationException (LIE) in TaxonNamePopupEditor
beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s... Andreas Kohlbecker
04:46 PM Revision 004972d5 (cdm-vaadin): ref #9313 further init strategy extension to adapt to new Origina...
Andreas Kohlbecker
04:45 PM feature request #9272 (Resolved): Add missing nomenclatural status
Finally we added
protected
in sched.
pro syn.
orth. var. (as status)
comb. ined.
Andreas Müller
03:01 PM bug #9311 (In Progress): Update some (abbrev) labels for nomenclatural status types
Andreas Müller
12:40 PM bug #9311 (In Progress): Update some (abbrev) labels for nomenclatural status types
opus. utique oppr. => op. utique oppr.
nom. orth. cons. => orth. cons.
nom. orth. cons. prop. => orth. cons. prop.
...
Andreas Müller
01:05 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page
Andreas Kohlbecker
09:34 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
Gomphonemopsis ligowskii is published and has a holotype.
I inserted a unpublished test reference Kusber in Zeitschr...
Wolf-Henning Kusber
09:17 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
Checked this example. The issue is perfectly solved. Before we close the ticket, I want to find an example with mixed... Wolf-Henning Kusber
11:51 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries
please review Katja Luther
11:51 AM Revision dea3754f (taxeditor): ref #9307: add preference page for termtrees and adapt label provider
Katja Luther
11:06 AM Revision aa2fb1b5 (cdmlib): correct handling of doubtful synonyms
Katja Luther
11:02 AM Revision 68bfcb66 (cdmlib): avoid NPE in Typedesignation Manager for sources without reference
Katja Luther
10:54 AM Revision 43e9fd92 (taxeditor): move condensedDistribution preference to distribution preferences
Katja Luther
08:40 AM bug #9310 (New): Deleting a taxon with all synonyms fails for the basionym
The synonym set as basionym is not deleted because the check for basionym prevents the delete. There should be anothe... Katja Luther
08:32 AM feature request #7797: Second nomenclatural reference
AM:
... Eine Idee wäre, den Text dieser zweiten Referenzen statt in die NameFacts in die neue Nomenclatural Sourc...
Andreas Müller

11/19/2020

07:29 PM Revision c23a56d8 (cdm-dataportal): harmonizing loading indicator color with other openlayers con...
Andreas Kohlbecker
07:05 PM Revision fc4f8c8d (cdm-dataportal): ref #9224 reporting WMS tile loading errors per layer in the ...
Andreas Kohlbecker
05:14 PM bug #9184 (Closed): WSOD in advanced search cdm_dataportal/search
After re-indexing the problem does no longer occur.
discrepancies of the search index with the database could be m...
Andreas Kohlbecker
01:38 PM bug #9184: WSOD in advanced search cdm_dataportal/search
This problems seems to be caused by search indices which are not in sync with the cdm db.
The data portal now igno...
Andreas Kohlbecker
05:06 PM Revision 78fb1106 (cdm-dataportal): fix for unavailable custom_placeholder_image
Andreas Kohlbecker
03:38 PM feature request #9309: Improve handling of specimen without titlecache in cdmLight
The problem here is not primarily a cdmlight issue but an issue of missing title cache strategy (formatter) for Deriv... Andreas Müller
01:55 PM feature request #9309 (New): Improve handling of specimen without titlecache in cdmLight
copied from #9262:
Ausgabe -title cache generation not implemented-. Das kommt, soweit ich sehe, nur bei specimens...
Katja Luther
03:09 PM Revision 72408704 (cdmlib): fix presence questionable handling in test terms
Andreas Müller
02:12 PM Revision dee298b3 (cdmlib): Update javadoc for CdmPreference related classes.
Andreas Müller
02:01 PM bug #9199 (Resolved): Adapt Editor to switch to originalSource for remaining single sourced objects
This is fixed for all sources listed above, for sec reference I create a new ticket or we create a new one when the s... Katja Luther
01:58 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Car...
all issues are implemented except the specimen without titleCache, therefore a new ticket exist (#9309) Katja Luther
01:56 PM feature request #9262 (Resolved): Several open issues for cdmlight export related to Cactaceae an...
Katja Luther
01:36 PM Revision 04b1e433 (cdm-dataportal): ref #9184 ignoring null entities in lucene search result and ...
Andreas Kohlbecker
01:32 PM Revision cb6764ac (taxeditor): ref #9262: adapt cdmlight preference handling to renamed predicate
Katja Luther
12:15 PM task #9266: Remove protologue section from TaxEditor
Andreas Müller wrote:
> The protologue section should also be removed from local and DB preferences I guess as it pr...
Katja Luther
12:11 PM feature request #9297 (Resolved): Improve name of zip file for cdmLightExport
please review Katja Luther
12:10 PM feature request #9299 (Resolved): Add LSID to author and reference details
please review Katja Luther
11:50 AM Revision a33cb038 (cdmlib): PreferencePredicate condensedDistributionRecipe not only for cdmLight
Katja Luther
11:47 AM Revision 3bf91ce5 (cdmlib): CondensedDistributionRecipe enum is IKeyLabel
Katja Luther
10:51 AM Revision 36ac0d5d (taxeditor): add lsid field to person details
Katja Luther
10:39 AM Revision c875d034 (taxeditor): add lsid field to reference details
Katja Luther
10:34 AM Revision 99197d76 (taxeditor): ref #9297: improve zip file name - continue
Katja Luther
10:33 AM Revision 8fd0ede6 (taxeditor): ref #8774: remember expansion state when removing feature from fea...
Katja Luther
10:26 AM Revision fb43bf21 (taxeditor): ref #9297: improve zip file name
Katja Luther
10:12 AM Revision 8d36f034 (cdmlib): revert disabling condensed distr. string and add missing presence abs...
Katja Luther
09:04 AM Revision 9a899f86 (cdmlib): disable condensed distribution string in cdmlight export test
Katja Luther

11/18/2020

04:50 PM Revision 5d62d265 (cdmlib): ref #9262: minor
Katja Luther
03:59 PM Revision 36fa3d85 (taxeditor): ref #9297: add preferences and some code cleaning
Katja Luther
03:58 PM Revision c842935a (cdmlib): ref #9262: add possibility to export condensed distribution string - ...
Katja Luther
03:56 PM Revision ddbbb621 (cdm-vaadin): ref #9308 slight improvement for type status in bold letters
Andreas Kohlbecker
03:54 PM task #9308: Supress "designated by" reference in portal in registration ListView and Registration...

Even if the plural "s" problem is fixed, there are also other problems with showing the type status in bold letters...
Andreas Kohlbecker
03:51 PM Revision 44bef338 (cdmlib): ref #9262: add possibility to export condensed distribution string
Katja Luther
02:03 PM Revision 40eb3245 (cdmlib-apps): remove methods not in use in CubaExcelImport
Andreas Müller
02:02 PM Revision 46ade909 (cdmlib-apps): replace links to trac tickets by links to redmine tickets in jav...
Andreas Müller
02:02 PM Revision 8275a22c (cdmlib-apps): cleanup
Andreas Müller
11:49 AM Revision da219650 (cdm-vaadin): ref #9290 comment on typdesignation citation problem
Andreas Kohlbecker
10:25 AM Revision 101d7930 (cdm-vaadin): cleanup
Andreas Müller
10:01 AM Revision 43dd85e9 (cdmlib): cleanup
Andreas Müller
10:01 AM Revision 138715e0 (cdmlib): replace links to trac tickets by links to redmine tickets in javadoc
Andreas Müller

11/17/2020

06:00 PM bug #9230 (Resolved): Type in preparation of a published name displayed in PhycoBank Portal Name ...
please review Andreas Kohlbecker
01:17 PM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
it is the portal/name/{uuid}/typeDesignations which misses to filter the entities Andreas Kohlbecker
05:59 PM Revision 71152358 (cdm-dataportal): ref #9230 fixing bug in test assertion
Andreas Kohlbecker
05:47 PM Revision cc665988 (cdmlib): ref #9230 RegistrableEntityFilter to centralize filter functions
Andreas Kohlbecker
05:47 PM Revision 41dde72f (cdmlib): ref #9230 RegistrableEntityFilter function for type designations and ...
Andreas Kohlbecker
03:51 PM task #9308 (New): Supress "designated by" reference in portal in registration ListView and Regist...
Andreas Kohlbecker
03:51 PM task #9308 (New): Supress "designated by" reference in portal in registration ListView and Regist...
this task has been copied from #9302
see also #9306
Also fix the dangling plural `s` of "isotypes" which is not...
Andreas Kohlbecker
10:14 AM Revision b0e51e45 (taxeditor): ref #9266: some layout issues and label renaming
Katja Luther
09:09 AM Revision fc20040c (cdmlib): ref #9204 upgrade xstream version in cdmlib
Andreas Müller
09:07 AM task #9189: Move datasource view to taxeditor.webapp
Is this for review? Andreas Müller
09:01 AM feature request #9307: Preferences for display of termtrees and entries
As this is related to #8774 I move it to the current milestone Andreas Müller
08:27 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries
Like for terms we need a preference and a preference page for how to display term trees/entries. Katja Luther

11/16/2020

05:31 PM Revision b728050e (cdm-dataportal): ref #9230 implementing test for exposure of unpublished type ...
Andreas Kohlbecker
02:44 PM task #9306: Registration result list: supress "designated by" reference in portal
example url http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/registration-search/filter?ident... Andreas Kohlbecker
02:43 PM task #9306 (Closed): Registration result list: supress "designated by" reference in portal
Andreas Kohlbecker
02:42 PM task #9306 (Resolved): Registration result list: supress "designated by" reference in portal
Applied in changeset commit:cdm-dataportal|947ee97b814df065ae6381649c29ba3a5c5bd272. Andreas Kohlbecker
02:01 PM task #9306 (Closed): Registration result list: supress "designated by" reference in portal
this task has been copied from #9302
The portal used the `summaryTaggedText` to render the entries in `compose_reg...
Andreas Kohlbecker
02:42 PM Revision 947ee97b (cdm-dataportal): fix #9306 filtering designated by reference out for registrat...
Andreas Kohlbecker
10:47 AM Revision 1d916b0b (taxeditor): ref #9266: minor
Katja Luther
10:24 AM Revision be28cd99 (taxeditor): code cleaning
Katja Luther
09:58 AM feature request #9305: Include additional TypeDesignationStatus sort order (term tree) in CDM terms
This requires that term tree can be loaded also during term loading. This in future should come from the term server ... Andreas Müller
09:54 AM feature request #9305 (New): Include additional TypeDesignationStatus sort order (term tree) in C...
For type designation status we need different orders. In dropdown menus like in TaxEditor the current order which has... Andreas Müller
09:25 AM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomencl...
As this is related to the implementation of #6581 I move it to the current milestone. Andreas Müller
09:20 AM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomencl...
AM (Original Mail): ja das war mir auch schon aufgefallen. Habe keine richtige Lösung dafür. Klar ist, wenn unter „mo... Andreas Müller
09:24 AM feature request #6581 (Resolved): Make all microreferenced references OriginalSources
This is more or less solved. Open issues hshould be moved to new tickets if not yet done. Andreas Müller
09:16 AM feature request #9304 (New): While creating new reference choosing the type first
To avoid generic references the user should have to choose the reference type first when entering a new reference.
Katja Luther
09:16 AM bug #9281: Set basionym not available for heterotypic synonyms after drag & drop
This is core functionality so we should implement it soon. Andreas Müller
09:11 AM feature request #9297: Improve name of zip file for cdmLightExport
WGB: da fände ich die erste Option (Taxon/Klassifikation zuerst) auch schöner. Andreas Müller
09:10 AM bug #9286: Re-connect and change user should be disabled if no datasource is connected yet
please review Katja Luther

11/14/2020

08:34 PM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomencl...
Please be aware that we do have a predicate for these attributes already. Better would be to implement the specific n... Andreas Müller
08:29 PM bug #8984: Registration search result list: Format display of two type specimens
At least the kommata handling might be fixed by implementations from #9279, but not sure Andreas Müller
08:15 PM task #9300: Name Page: harmonize media specimen lectotype representations
Andreas Kohlbecker wrote:
> Since the Citation part will end with a dot character, is seems incorrect to write "desi...
Andreas Müller
08:05 PM bug #9302: Phycobank related issues for TypeDesignation formatting
AM:
ich habe, wie besprochen versucht den Punkt
"The search result in phycobank currently includes citation inf...
Andreas Müller
07:14 PM bug #9302: Phycobank related issues for TypeDesignation formatting
AM: Bei der Diskussion ums Typusmodul vor ca. 2 Jahren hatten wir diskutiert und später auch implementiert, dass es 2... Andreas Müller
07:12 PM bug #9302: Phycobank related issues for TypeDesignation formatting
AM:
Bisher war gewünscht, Quellen als Kurzzitat mit „Autor (Jahr)“ anzugeben, was sowohl für die designated by Que...
Andreas Müller
07:10 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting
Andreas Müller
05:05 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting
In the Phycobank context a couple of issues for type formatting have been found, after TypeDesginationSetManager has ... Andreas Müller
07:17 PM bug #9303 (New): [DISCUSS+IMPLEMENT] Make type designation micro references for non-lectotypes ed...
AM:
Bei der Diskussion ums Typusmodul wurde damals beschlossen, dass wir lediglich bei Lecto-, Epi- und Neotypen u...
Andreas Müller
06:41 PM Revision c3fed23d (cdmlib): ref #6591 fix SchemaUpdater_5184_5185 preliminary and add update scri...
Andreas Müller
06:30 PM Revision 4272bcd2 (cdmlib): ref #6591 fix OriginalSpellingMover
Andreas Müller
06:29 PM Revision b08ed055 (cdmlib): ref #6591 fix SingleTermRemover
Andreas Müller
06:28 PM Revision 37e61bd2 (cdmlib): ref #9302 remove bracket around year in short citations for type desi...
Andreas Müller
06:26 PM Revision d98c0473 (cdmlib): cleanup
Andreas Müller
06:15 PM Revision 0ec42e61 (cdmlib): ref #6591 add first version of Original Spelling Mover
Andreas Müller
06:15 PM Revision 90b8a418 (cdmlib): add SchemaUpdater_5184_5185
Andreas Müller

11/13/2020

12:36 AM feature request #9299: Add LSID to author and reference details
As far as I understand WGB this is a functionality that is needed soon. As to me it sounds like easy to implement I s... Andreas Müller
11:09 AM feature request #9299 (Feedback): Add LSID to author and reference details
Katja Luther
12:34 AM bug #6947: Incorrect error for LSID field
I guess this is for review ... Andreas Müller
01:39 PM bug #6947 (Resolved): Incorrect error for LSID field
Applied in changeset commit:taxeditor|0faab9c0c0eae654583982c6f067e89851f758ee. Katja Luther
06:10 PM feature request #9301 (New): SpecimenTypeDesignationEditor: Add fields for citation and citationD...
for all TypeDesignations where `typeStatus.hasDesignationSource() == true` field for citation and citationDetail need... Andreas Kohlbecker
05:41 PM feature request #8308 (Feedback): Extend specimen type designation editor
I can't see that there is anything missing:
type status:
![](picture825-1.png)
image references representi...
Andreas Kohlbecker
04:36 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
the Excel file belongs to the other ticket - cleaning up here .... Andreas Kohlbecker
04:35 PM bug #9290: stop using the Registration.citation as citation for TypeDesignations in all type editors
Update to the Excel file.
Now the reference type is also shown.
"Irregular" Reference Types are highlighted.
Andreas Kohlbecker
03:13 PM task #9300 (Feedback): Name Page: harmonize media specimen lectotype representations
Since the Citation part will end with a dot character, is seems incorrect to write "designated by", it better should ... Andreas Kohlbecker
03:10 PM task #9300 (Feedback): Name Page: harmonize media specimen lectotype representations
The name *Heterocapsa triquetra* f. *apiculata* Er.Lindem. has a media specimen as lectotype.
* The "designated ...
Andreas Kohlbecker
01:41 PM Revision d8d71f2a (taxeditor): ref #9266: minor
Katja Luther
01:39 PM Revision 0faab9c0 (taxeditor): fix #6947: fix error for empty lsid field
Katja Luther
11:04 AM feature request #9298 (New): Preference for IDinSource, IdNamespace and original information in n...
IDInSource and IDNamespace are not needed for nomenclatural source therefore the display should be handled by a prefe... Katja Luther
10:42 AM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
The zip file created by the cdmLight export should contain more informations about the data.
For example:
{TaxonN...
Katja Luther
10:39 AM Revision 316f9d85 (taxeditor): fix wrong background after changing rank in nameDetailElement
Katja Luther
10:11 AM feature request #9296 (New): Preference to show/not show infrageneric epithet for species
ERS:
Eingabe eines name in source: im Formular „New Scientific Name“ gibt es einen bug: das scroll-down-Menü für „Ra...
Katja Luther
10:09 AM feature request #9295 (New): Preference to set default reference type for new references
ERS:
Bei der Eingabe einer neuen Referenz steht der „Reference Type“ standardmäßig auf „Generic“. Der häufigste Fall...
Katja Luther
10:07 AM feature request #9294 (New): New person dialog with protected titleCache
ERS:
Wenn ich im Laufe der Eingabe einer neuen Referenz einen neuen Autor eingeben muss, öffnet sich im Dialogfeld „...
Katja Luther
09:06 AM feature request #9262 (In Progress): Several open issues for cdmlight export related to Cactaceae...
Katja Luther
08:58 AM feature request #7700 (Closed): use TypeDesignationSetManager for creating typedesignation string...
I think we can close this ticket as there is kind of a follow up ticket with #9279 Andreas Müller
08:22 AM Revision bdd421bd (taxeditor): fix empty datasource view
Katja Luther

11/12/2020

05:52 PM Revision 398413cc (cdmlib): ref #9253 removing initstrategy from DTO service method - cleaning up
Andreas Kohlbecker
04:44 PM Revision ba48bce0 (cdmlib): ref #9253 removing initstrategy from DTO service method
Andreas Kohlbecker
04:02 PM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
no more problems Andreas Kohlbecker
03:23 PM bug #9289: LazyInitializationException (LIE) in NameTypeDesignationEditor
fixed by commit:cdm-vaadin|84760d27
Andreas Kohlbecker
03:54 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
Andreas Kohlbecker
03:52 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
this ticket is either completed or open tasks are copied to new tickets, so it can be closed Andreas Kohlbecker
03:50 PM task #9293 (New): Use use DTO for Set<IdentifiableSource> sources in SpecimenOrObservationBaseDTO
copied from #9252 Andreas Kohlbecker
03:21 PM Revision 84760d27 (cdm-vaadin): ref #6581 adapting init strategy to new original source handling
Andreas Kohlbecker
11:39 AM Revision 68e7703e (taxeditor): ref #9266: restructure nomenclatural source detail element
Katja Luther
11:04 AM Revision 468ead78 (taxeditor): ref #9266: restructure nomenclatural source detail element
Katja Luther

11/11/2020

03:36 PM Revision 9270c708 (cdmlib): ref #9262: add homotypic group sortindex
Katja Luther
11:41 AM Revision 8f36abc7 (taxeditor): ref #9199: fix problems with nomenclatural reference details
Katja Luther
11:34 AM bug #8592: consider renaming menu entry General->Switch User
Currently it is not wanted that users connect to another db as this does not work correctly due to static term proble... Andreas Müller
08:59 AM task #7917: Revise ReferenceSystemTerms
Do you really think that a measurement method is the same as the mathematical model that is needed to make sense of t... Andreas Kohlbecker
08:29 AM Revision adf08111 (cdmlib): ref #8774: save term tree informations
Katja Luther
08:24 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Katja Luther wrote:
> > ...
> > This is caused by dirty data, I cleaned up the database, n...
Katja Luther

11/10/2020

05:53 PM task #7917: Revise ReferenceSystemTerms
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> > > So you are planning to use the r...
Andreas Kohlbecker
05:51 PM task #7917: Revise ReferenceSystemTerms
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > So you are planning to use the reference system for computati...
Andreas Müller
11:07 AM task #7917: Revise ReferenceSystemTerms
Andreas Müller wrote:
> So you are planning to use the reference system for computations in the near future?
Plac...
Andreas Kohlbecker
09:44 AM task #7917: Revise ReferenceSystemTerms
So you are planning to use the reference system for computations in the near future? Andreas Müller
08:52 AM task #7917: Revise ReferenceSystemTerms
BTW: the CRS for GPS is WGS 84
For solving the the current misconception in the model we need to distinguish the *...
Andreas Kohlbecker
05:04 PM task #9291 (New): Clear all unnecesary TypeDesignation.citation entities and citationDetails
**This ticket should be solved after #9290 is being released and deployed to phycobank**
This is the query to whic...
Andreas Kohlbecker
04:59 PM bug #9290 (New): stop using the Registration.citation as citation for TypeDesignations in all typ...
As shown in the analysis ( attachment:"TaxonName and Typedesignation citations unequal_diff.xlsx" ) using the `Regist... Andreas Kohlbecker
02:48 PM Revision 2749233a (taxeditor): move menu item
Katja Luther
02:42 PM Revision e2669604 (taxeditor): show menu items only once
Katja Luther
12:19 PM bug #9286 (Resolved): Re-connect and change user should be disabled if no datasource is connected...
Applied in changeset commit:taxeditor|cea74dc3dd7328308f0fda121d2ccc5b7246c9a8. Katja Luther
12:17 PM Revision 5affe60a (taxeditor): ref #8774: do not allow duplicates in character editor
Katja Luther
11:51 AM Revision e4a5c66f (taxeditor): ref #8774: do not allow duplicates in term tree editors if voc doe...
Katja Luther
11:34 AM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
Buryatia belyaevae Kulikovskiy, Metzeltin & Lange-Bert. name type for Buryatia belyaevae Kulikovskiy, Metzeltin & Lan... Andreas Kohlbecker
09:43 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Katja Luther wrote:
> ...
> This is caused by dirty data, I cleaned up the database, now the feature trees and the ...
Andreas Müller
09:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> adding a child (which was a duplicate but the tree did not allow duplicates, don't know if t...
Katja Luther
09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
Katja Luther

11/09/2020

03:44 PM Revision 59a68768 (cdmlib): fix syntax exception
Katja Luther
03:39 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Unordered trees should preferably be ordered alphabetically by label or idInVoc or whatever the first part of the use... Andreas Müller
03:29 PM bug #8774: Reimplement term tree editors to implement the general save strategy
When adding/removing terms the tree should stay expanded. Currently it collapses and you have to reopen it. Best woul... Andreas Müller
03:27 PM bug #8774: Reimplement term tree editors to implement the general save strategy
~~The duplicate check should be done when adding the term not only when saving it.~~
this is fixed.
Andreas Müller
03:22 PM bug #8774: Reimplement term tree editors to implement the general save strategy
adding a child (which was a duplicate but the tree did not allow duplicates, don't know if this is relevant):
last...
Andreas Müller
03:13 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t...
Andreas Müller
03:12 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t...
Andreas Müller
03:11 PM bug #8774: Reimplement term tree editors to implement the general save strategy
~~Changing the name of a vocabulary is not possible. The changes neither show up in the term tree editor nor do they ... Andreas Müller
02:52 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
Katja Luther
02:49 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Can we show the details of a term anyway even if it is not editable in the term tree editor....
Katja Luther
02:44 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Can we show the details of a term anyway even if it is not editable in the term tree editor. This is because the pure... Andreas Müller
02:34 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named Area", "Others" and then... Andreas Müller
02:31 PM bug #8774: Reimplement term tree editors to implement the general save strategy
It is now possible to open 2 term tree Editors of the same type. This is not wanted as a term tree editor always edit... Andreas Müller
02:28 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
Trying to open the feature tree editor opened it in the buttom panel and no tree appeared and no conext menu existed ... Andreas Müller
02:25 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Drag&drop still seems to work like in the old version with no dirty flag but immediate save ...
Andreas Müller
02:07 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
~~Drag&drop still seems to work like in the old version with no dirty flag but immediate save of change.~~ Andreas Müller
03:16 PM feature request #9288 (New): Add symbols for flags in use for term trees in term tree editor
The flags are "allow duplicates", "order relevant" and "is flat".
As long as we do not have better symbols we coul...
Andreas Müller
02:49 PM bug #9287 (New): Show term details in details view of term editor
From ticket #8774:
Can we show the details of a term anyway even if it is not editable in the term tree editor. Th...
Katja Luther
02:42 PM Revision cea74dc3 (taxeditor): fix #9286: add core expression to reconnect menu item
Katja Luther
02:12 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
Currently choosing the re-connect leads to a NPE Andreas Müller
02:06 PM task #7917: Revise ReferenceSystemTerms
I remember the outcome differently.
> conglomerate of different types of possibilities to define what has been use...
Andreas Kohlbecker
01:33 PM task #7917: Revise ReferenceSystemTerms
We had discussed this issue some years ago and as far as I remember the result was, that the term ReferenceSystem mig... Andreas Müller
01:44 PM feature request #8402: ordering typedesignations in name and taxon page
follow up tasks are copied to #9283, #9284, #9285 Andreas Kohlbecker
01:43 PM task #9285 (New): apply the order of the chosen TermTrees to the typedesignations in name and tax...
This should preferably implemented by adding a query parameter to the webservice delivering the typedesignations.
...
Andreas Kohlbecker
01:40 PM feature request #9284 (New): Admin UI to define the TermTrees as sort order preset
this is required at least for the order of typedesignations in name and taxon page, see #8402 Andreas Kohlbecker
01:37 PM task #9283 (New): Webservice for TermTrees implemented
this webservice may be similar to the vocabulary web service.
It is important that the order of terms is retained
Andreas Kohlbecker
01:23 PM bug #9215 (Closed): Drop down for empty rank does not work
This seems to be fully fixed. Andreas Müller
01:15 PM task #9266 (Feedback): Remove protologue section from TaxEditor
The protologue section should also be removed from local and DB preferences I guess as it probably has no effect to u... Andreas Müller

11/06/2020

10:03 PM Revision 361c1e1d (cdmlib): cleanup and javadoc
Andreas Müller
05:20 PM Revision 071a56e6 (cdm-dataportal): ref #8402 ref #9279 adapting sort order to latest changes in ...
Andreas Kohlbecker
05:15 PM Revision 22354fa0 (cdm-dataportal): ref #8402 ref #9279 adapting sort order to latest changes in ...
Andreas Kohlbecker
05:13 PM feature request #8402: ordering typedesignations in name and taxon page
The sort order should follow the order of the type designation status terms either of that in the vocabulary or in a ... Andreas Kohlbecker
05:12 PM task #9266 (Resolved): Remove protologue section from TaxEditor
The protologue section is removed/commented, please review afterwards I will remove the code completely. Katja Luther
05:09 PM Revision 8d385449 (taxeditor): rename/structure language preferences - admin prefs
Katja Luther
05:06 PM Revision 8ec0ee52 (taxeditor): rename/structure language preferences
Katja Luther
05:04 PM Revision 85ff485a (taxeditor): ref #9266: remove protologue section - needs to be cleaned up
Katja Luther
03:59 PM feature request #9282 (Resolved): Add nomenclatural standing
According to #9272 there are 4 classes of nomenclatural standing. These should be stored together with the accordings... Andreas Müller
01:41 PM Revision b6099a9c (cdmlib): ref #8774: missing files
Katja Luther
01:26 PM Revision 9ad46d6b (cdmlib): ref #9252 piping baseofRecord through KeyTermValueProcessor
Andreas Kohlbecker
01:24 PM Revision d5d943cb (cdm-dataportal): ref #9252 adapting portal to latest DTO changes
Andreas Kohlbecker
01:22 PM feature request #9272: Add missing nomenclatural status
The situation has changed. Later isonym already exists as name relationship, not as status. At the same time there ar... Andreas Müller
01:06 PM feature request #9279: Improve type designation formatting and TypeDesignationSetManager
An example for unparsed specimen from Cactaceae: Selenicereus anthonyanus (Alexander) D.R.Hunt
Resulting in:
 –...
Andreas Müller
12:16 PM feature request #9279 (In Progress): Improve type designation formatting and TypeDesignationSetMa...
Andreas Müller
12:05 PM bug #9281 (New): Set basionym not available for heterotypic synonyms after drag & drop
mail ERS:
beim Zusammenstellen von Synonymen in einer homotypischen Gruppe im Freitext-Editor ist es anschließend ...
Katja Luther
11:19 AM Revision b8a1c0fe (taxeditor): fix i18n
Katja Luther
10:46 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
all termtree editors are now switched to dtos. please review. Katja Luther
10:45 AM Revision a5c3b1fd (taxeditor): ref #8774: fix character creation
Katja Luther
10:44 AM Revision 2cb9b55f (cdmlib): ref #8774: fix getPath of termnode
Katja Luther

11/05/2020

05:18 PM task #9280 (New): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel()
The property name IKeyTerm.message is misleading and confusing it should be renamed to label
----
From email co...
Andreas Kohlbecker
04:04 PM report #8177 (Worksforme): Discuss: How to add originals of a type specimen
We concluded that adding of intermediate originals to a specimen is a special case for phycobank. This usecase in not... Andreas Kohlbecker
03:04 PM Revision c3e91e82 (taxeditor): add local to application MANIFEST
Katja Luther
02:58 PM Revision cee85ae0 (taxeditor): ref #9154: fix fragment.e4xmi
Katja Luther
02:21 PM Revision 1f3831c5 (cdmlib): cleanup
Andreas Müller
02:21 PM Revision ab1f58a9 (cdmlib): ref #9279 improve TypeDesignationSetManager
Andreas Müller
02:08 PM feature request #9279 (In Progress): Improve type designation formatting and TypeDesignationSetMa...
these are open issues from #7700 and general issues
Some issues are
* parameterize formatting (with citation, w...
Andreas Müller
12:50 PM Revision df35ccb3 (cdmlib): remove unused method in depracted FeatureNodeService
Katja Luther
11:55 AM Revision de68e009 (cdmlib): ref #8774: avoid NPE in delete method
Katja Luther
11:18 AM Revision f00aae44 (cdmlib): ref #8774: improve save method for new characternodes
Katja Luther
09:58 AM feature request #9277: User rights for name, name type, and specimen type notes
Submitters and curator(s) should have the same rights to create notes.
except for the status of the registrations:...
Wolf-Henning Kusber
09:23 AM feature request #9277 (New): User rights for name, name type, and specimen type notes
Submitters and curator(s) should have the same rights to create notes.
Name editor:
Technical (currently enabled ...
Wolf-Henning Kusber
09:47 AM feature request #9278 (New): Notes for references
Currently the curator has the option to fill
Editorial notes (for publication; not implemented yet)
Technical notes...
Wolf-Henning Kusber
09:32 AM Revision 8bf5dd93 (taxeditor): ref #8774: fix save of newly created character nodes
Katja Luther
09:29 AM Revision 25b3a146 (cdmlib): ref #8774: save method for new characternodes
Katja Luther

11/04/2020

04:20 PM Revision 6043d78e (cdm-dataportal): ref #9262 adapting dataportal to lowercase typedesignation st...
Andreas Kohlbecker
03:16 PM Revision 002cdd32 (cdmlib): ref #9252 renaming property derivates to derivatives
Andreas Kohlbecker
03:16 PM Revision 0ff8cbcf (cdm-dataportal): ref #9252 renaming property derivates to derivatives - adapti...
Andreas Kohlbecker
03:15 PM Revision 8b35bc36 (cdmlib): reference search for abbrevTitleCache and titleCache
Katja Luther
03:15 PM Revision 5a8468de (cdmlib): ref #9262: smaller changes
Katja Luther
03:09 PM Revision f51e4e4e (cdm-dataportal): ref #9252 removing deprecated property listLabel - adapting d...
Andreas Kohlbecker
03:09 PM Revision 03b91810 (cdmlib): ref #9252 removing deprecated property listLabel
Andreas Kohlbecker
03:04 PM Revision 8a605860 (cdm-dataportal): ref #9252 using IEnumTerm for recordBase - adapting dataportal
Andreas Kohlbecker
12:42 PM Revision 25dfcf2f (cdmlib): ref #9252 using IEnumTerm for recordBase
Andreas Kohlbecker
12:42 PM Revision 54b7f04e (cdmlib): ref #9252 documenting further needed refactoring
Andreas Kohlbecker
12:34 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
tasks regarding DerivateDataDTO copied to other ticket Andreas Kohlbecker
12:31 PM task #9276 (New): improve DerivateDataDTO
copied from #9252
DerivateDataDTO needs harmonization:
* find better class name
* Use `List<MediaDTO>` instead...
Andreas Kohlbecker
12:08 PM report #9268: Check cdm for GC G1 humongous objects problem
Andreas Kohlbecker wrote:
> this finding can be especially relevant for imports and exports, therefore we should exa...
Katja Luther
12:00 PM report #9268 (Feedback): Check cdm for GC G1 humongous objects problem
this finding can be especially relevant for imports and exports, therefore we should examine I/O functionalities whic... Andreas Kohlbecker
11:29 AM report #9268: Check cdm for GC G1 humongous objects problem
further results from the test server after startup and running the Data Portal Cacher for E+M by 8,5% (attachment:g1-... Andreas Kohlbecker
10:47 AM task #9275 (New): Cleanup apache configuration from "AllowEncodedSlashes On"
see #7563 for servers which need to be cleaned Andreas Kohlbecker
10:42 AM bug #9240 (Closed): nomenclatural status missing in name and registration page
Andreas Kohlbecker

11/03/2020

09:27 PM Revision c2139d5c (cdmlib): cleanup
Andreas Müller
06:30 PM report #9268 (In Progress): Check cdm for GC G1 humongous objects problem
Andreas Kohlbecker
06:30 PM report #9268: Check cdm for GC G1 humongous objects problem
I enabled G1 GC logging as described in https://plumbr.io/handbook/gc-tuning-in-practice/other-examples/humongous-all... Andreas Kohlbecker
05:45 PM feature request #9134: Rule based creation of additional media representations "on the fly"
I improved the regex in the DefaultMediaTransformations for digilib, this is the new default:
~~~json
[ {
"sch...
Andreas Kohlbecker
05:42 PM Revision 41ed639d (cdmlib): ref #9134 improving regex in DefaultMediaTransformations for digilib
Andreas Kohlbecker
04:25 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
Thumbnails have been removed from cyprus DB (also from AUD tables).
So the only open issue is now to update links ...
Andreas Müller
01:59 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
Removing thumbnails:
~~~sql
SELECT *
FROM MediaRepresentation mr
INNER JOIN MediaRepresentationPart mrp ON mrp....
Andreas Müller
02:02 PM feature request #9274 (New): Analyze where recalculating of taxon navigator is really necessary
mail AM:
Wenn der Navigator verlinkt ist, wird sehr viel Zeit damit verbracht, den Navigator nach vielen Aktionen ...
Katja Luther
12:24 PM feature request #9273 (New): [DISCUSS] Unify Nomenclatural status and name relationships
Often these 2 represent the same. The unified class would be a relation which is either unary or binary.
Andreas Müller
11:48 AM bug #8751 (Rejected): Replace saveOrUpdate() in AbstractTermTreeEditor
Katja Luther
11:46 AM bug #8751 (Resolved): Replace saveOrUpdate() in AbstractTermTreeEditor
This is fixed by using dtos for the termtree editors. See #8774.
Maybe we should set the status to rejected becaus...
Katja Luther
11:42 AM Revision 2931e154 (cdmlib): ref #8774: reuse treeDto for all node dtos
Katja Luther
11:36 AM Revision 458132f7 (taxeditor): ref #8774: fix refresh after remove featurenode
Katja Luther
11:07 AM feature request #9272: Add missing nomenclatural status
We still need (Latin) abbreviations for these two status types. Andreas Müller
11:05 AM feature request #9272 (Resolved): Add missing nomenclatural status
From the EDIT manual for nomenclatural status and name relationships.
Designations
* invalid names
* invali...
Andreas Müller
10:24 AM Revision 5790f731 (taxeditor): ref #8774: fix drag & drop in character editor
Katja Luther

11/02/2020

09:37 PM feature request #9271 (New): Improve E+M dataportal performance
To fully release the E+M data portal which should try to improve the peformance to the performance difference between... Andreas Müller
09:20 PM Revision d772a673 (cdmlib): ref #6589 adapt cdmlight export to new protologue handling
Andreas Müller
09:19 PM Revision e0d5e5a8 (cdmlib): cleanup
Andreas Müller
08:46 PM feature request #3665 (In Progress): Further implementation of original spelling name caching
This has been mostly implemented in 4.7 and 4.8. Need to check if something is still open. Andreas Müller
08:36 PM bug #7781: original spelling is missing for accepted taxon in taxon page
As this is requested multiple times we should try to implement it in one of the next releases. Andreas Müller
08:35 PM feature request #9270: show original spelling on taxon page
This is probably a duplicate for #7781 Andreas Müller
08:28 PM feature request #9270 (New): show original spelling on taxon page
ERS:
Der Name Vulpia fontqueriana has original spelling Vulpia fontquerana.
Daher wird mir im Editor im Freitextb...
Andreas Müller
08:11 PM Revision d9495f8d (cdmlib): ref #8774: fix test in suite
Andreas Müller
08:08 PM Revision 12cee3aa (cdmlib): cleanup
Andreas Müller
05:02 PM Revision 7325a44d (cdmlib): cleanup
Andreas Müller
04:15 PM Revision 6320b0c9 (cdmlib): ref #6589 adapt cdmlib import scripts to new protologue handling
Andreas Müller
04:14 PM Revision 4f4efaf6 (cdmlib-apps): ref #6589 adapt import scripts to new protologue handling
Andreas Müller
03:08 PM Revision 41963d8b (taxeditor): ref #8774: smaller changes in character editor or correct right cl...
Katja Luther
03:07 PM Revision 63802ff3 (cdmlib): cleanup
Andreas Müller
03:03 PM Revision bb68e768 (cdmlib): cleanup
Andreas Müller
02:31 PM feature request #9134: Rule based creation of additional media representations "on the fly"
posting the SQL INSERT statement to add the default transformation to a DB:
~~~sql
INSERT INTO CdmPreference
(ke...
Andreas Kohlbecker
01:57 PM feature request #9134: Rule based creation of additional media representations "on the fly"
Ok agreed, I am closing this ticket. Please open a new one for further discussion when needed. Andreas Kohlbecker
02:24 PM Revision 42b0120b (cdmlib): ref #8774: termnode dto tests - continue
Katja Luther
02:22 PM Revision 9958faa9 (cdmlib): ref #8774: correct termtyoe in characterDto
Katja Luther
02:15 PM Revision c10c3ee4 (cdmlib): ref #8774: avoid NPE when creating new Enum
Katja Luther
02:00 PM task #9269: discuss with the flora of greece people if the new image viewer is to be activated
I am assigning this ticket to you Andreas since you are the main contact for the FOG in the BDI group. Andreas Kohlbecker
01:59 PM task #9269 (New): discuss with the flora of greece people if the new image viewer is to be activa...
please pass the ticket to me once we know the answer Andreas Kohlbecker
01:36 PM report #9268: Check cdm for GC G1 humongous objects problem
I can't see that we have objects of size in CDM real data Andreas Müller
01:16 PM report #9268 (Feedback): Check cdm for GC G1 humongous objects problem
problems of the G1 when there are Objects >= 1MB in the heap:
https://dzone.com/articles/whats-wrong-with-big-ob...
Andreas Kohlbecker
01:13 PM feature request #8865: more external-links to be implemented
Email von Stefan Dressler und marco schmidt Frankfurt and Eckhard
Euro+Med/IDs:
für die Verlinkung zu uns wäre ...
Andreas Kohlbecker
11:29 AM Revision 5fe18fef (cdmlib): fix test (cont.)
Andreas Müller
11:14 AM Revision cc517ed6 (cdmlib): fix test
Andreas Müller
11:14 AM Revision 329ee45b (cdmlib): cleanup
Andreas Müller
10:23 AM Revision f6651fc4 (taxeditor): rename bundle name in local
Katja Luther
09:17 AM bug #9267: No sec reference for move change Synonym to accepted Taxon
please review Katja Luther
09:15 AM bug #9267 (Resolved): No sec reference for move change Synonym to accepted Taxon
Applied in changeset commit:cdmlib|593c7701c265521b6e3701942e0f6c7756304963. Katja Luther
09:01 AM bug #9267 (Resolved): No sec reference for move change Synonym to accepted Taxon
mail WGB:
mir ist aufgefallen, dass beim Umwandeln eines Synonyms in einen akzeptierten Namen dem neuen Taxon eine...
Katja Luther
09:14 AM Revision 593c7701 (cdmlib): fix #9267: add no sec reference to newly created taxon moved from syn...
Katja Luther
08:44 AM bug #9263 (Resolved): Unify case for type designation status
This has been fixed by using lower case for specimen type designations now.
This lead to test failures in TypeDesi...
Andreas Müller

11/01/2020

08:51 AM Revision cafef344 (cdmlib): cleanup
Andreas Müller

10/30/2020

02:33 PM Revision db1795af (cdmlib): ref #8774: implement tests for dto handling - test changing represent...
Katja Luther
02:23 PM Revision af4b4144 (cdmlib): ref #8774: implement tests for dto handling - comment the assert stat...
Katja Luther
02:22 PM Revision 1edfe89d (cdmlib): ref #8774: implement tests for dto handling - continue
Katja Luther
02:20 PM Revision a1aece3d (cdmlib): ref #8774: implement tests for dto handling - continue
Katja Luther
02:03 PM feature request #6589 (Resolved): Handle protologue as original source with URI link
This is fixed now with model version 5.18.4.
However, #9266 and #9265 also need to be fixed before release
Andreas Müller
02:01 PM task #9266 (Feedback): Remove protologue section from TaxEditor
after protologues have been moved now to nomenclaturalSource.externalLink. Andreas Müller
01:55 PM Revision cafb8a16 (cdmlib): ref #8774: implement tests for dto handling - to be continued
Katja Luther
01:54 PM Revision 22294efa (cdmlib): ref #8774: small change in dto creation
Katja Luther
12:36 PM Revision b029bf34 (cdmlib): fix test and cdmlight export with html tags
Katja Luther
12:36 PM Revision 5ec713a3 (cdmlib): revert: temporarily ignore CdmLightExportTest s
Andreas Müller
12:34 PM Revision a84e50c3 (cdmlib): temporarily ignore CdmLightExportTest s
Andreas Müller
10:55 AM Revision 9f095f86 (taxeditor): ref #6589 update taxeditor h2 test db
Andreas Müller
10:54 AM Revision 90b5ff20 (taxeditor): ref #8774: fix term combo for dto selection
Katja Luther
10:52 AM Revision 7fea2e65 (cdm-vaadin): ref #6589 update vaadin h2 test db
Andreas Müller
10:48 AM Revision bee1d8ab (cdmlib): ref #6589 fix update script (incorrect alias) and update remote-webap...
Andreas Müller
10:47 AM Revision f5eab879 (cdmlib): ref #9262: fix homotypical group name comparator
Katja Luther
10:45 AM Revision f3ff329f (cdmlib): ref #8774: save plural of representation was missing
Katja Luther
10:40 AM Revision 1d4af21d (cdmlib): ref #8802 fix jaxb annotations for ExtendedTimePeriod
Andreas Müller
10:40 AM Revision 1d1b820e (cdmlib): ref #9263 use lower case for SpecimenTypeDesignationStatus
Andreas Müller
10:40 AM Revision cb45d97c (cdmlib): ref #6589 finalize update script for
Andreas Müller
10:40 AM Revision b45d1a7d (cdmlib): framework for SchemaUpdate to 5.18.4
Andreas Müller
09:23 AM feature request #9225 (Resolved): Make TaxonName.nomenclaturalSource a new DescriptionElementSour...
I think the vaadin test are now fixed (?). So can we close this ticket? Andreas Müller

10/29/2020

11:13 PM Revision d5603cc5 (cdmlib): ref #9262: add homotypic group strings
Katja Luther
09:50 PM Revision 900692d8 (taxeditor): revert changes
Katja Luther
09:19 PM Revision edc4e5ae (taxeditor): ref #8774: adapt term tree editors to dto usage
Katja Luther
04:54 PM Revision 4d68581f (cdmlib): ref #8774: further implementations for using term dtos in editor
Katja Luther
03:55 PM task #9265 (In Progress): Adapt dataportal to new protologue handling
Protologues are now handled as external links of the nomenclatural source (#6589). The dataportals (and maybe webserv... Andreas Müller
03:54 PM feature request #6589: Handle protologue as original source with URI link
SQL to find linking data to DescriptionBase holding the protologue image
~~~sql
SELECT n.titleCache
FROM TaxonN...
Andreas Müller
03:54 PM feature request #6589: Handle protologue as original source with URI link
SQL to find linking data to TextData holding the protologue image
~~~sql
SELECT DO.sources_id -- DO.DescriptionEl...
Andreas Müller
03:53 PM feature request #6589: Handle protologue as original source with URI link
~~The following records (sources for textdata) should also be deleted from AUD tables in Cichorieae . All other DBs d... Andreas Müller
03:07 PM Revision a63cd5d3 (cdmlib): ref #8802 add TemporalData to jaxb annotation in DescriptionBase
Andreas Müller
03:07 PM Revision 2ee2a9f2 (cdmlib): cleanup
Andreas Müller

10/28/2020

12:14 PM Revision cc5f5067 (cdmlib): ref #69554: additional homotypic group strings
Katja Luther

10/27/2020

01:44 PM Revision 575c50be (taxeditor): catch widget is disposed
Katja Luther
01:09 PM Revision c64a02e7 (cdmlib): ref #69554: fix test
Katja Luther
11:58 AM Revision 9f7f7692 (cdmlib): ref #69554: adapt cdmLight export
Katja Luther
11:14 AM bug #9263 (In Progress): Unify case for type designation status
NKo: ich würde sagen, wenn es als Satzanfang ausgegeben wird, dann groß, sonst klein. Auf gar keinen Fall abkürzen.
...
Andreas Müller

10/26/2020

11:23 AM bug #9264 (New): Flag for toggle button looses/switch value without clicking the button
mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat (H...
Katja Luther
 

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