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From 08/25/2018 to 09/23/2018

09/22/2018

02:22 PM feature request #7440 (In Progress): E+M mark common name reference with according marker
Done. Still needs to be tested. Andreas Müller
02:20 PM feature request #7769: E+M: Handle postulated parental species as taxon extensions
Applied in changeset commit:cdmlib-apps|59d588d3618128a6980f1d9bbf10e840f23e049c. Andreas Müller
02:20 PM Revision 853106aa (cdmlib-apps): ref #7440 add common name marker to common name references
Andreas Müller
02:19 PM Revision 4b241d73 (cdmlib-apps): cleanup
Andreas Müller
02:15 PM Revision a077e729 (cdmlib): add parental species ext to BerlinModelTransformer
Andreas Müller
02:14 PM Revision 32eec7cd (cdmlib): cleanup
Andreas Müller
01:24 PM bug #7786: Try to solve those occurrence sources for which the reference number can not be resolved
~~~
SELECT DISTINCT SourceNumber2Ref.*, r.*
FROM SourceNumber2Ref INNER JOIN
Reference r ON SourceNumber2Re...
Andreas Müller
08:26 AM bug #7786: Try to solve those occurrence sources for which the reference number can not be resolved
bei den OccurrenceSources sind ein paar kaputt gegangen, vermutlich weil die Identifier hier nicht als Zahlen sondern... Andreas Müller
08:25 AM bug #7786: Try to solve those occurrence sources for which the reference number can not be resolved
irgendwas ist auch noch seltsam bei folgenden Taxa:
Juncus acutiflorus Hoffm.
Juncus acutus L.
Juncus anceps Lah...
Andreas Müller

09/21/2018

05:36 PM bug #7786 (In Progress): Try to solve those occurrence sources for which the reference number can...
Andreas Müller
05:35 PM bug #7786 (In Progress): Try to solve those occurrence sources for which the reference number can...
Some of them only have a trailing whitespace problem and can be found by
~~~
SELECT *
FROM emOccurrenceSource
...
Andreas Müller
04:33 PM task #7785: CdmUserHelper caches permission information
Can the cache of the presenter be used in the CdmUserHelper to avoid loading the entities again? Andreas Kohlbecker
04:25 PM task #7785 (New): CdmUserHelper caches permission information
CdmUserHelper has been identified being hostspot in the cpu time analysis:
![](picture159-1.png)
Caching entit...
Andreas Kohlbecker
03:45 PM task #7784 (Closed): deduplicate and harmonize ClassificationController methods
Andreas Kohlbecker
03:45 PM task #7784 (Resolved): deduplicate and harmonize ClassificationController methods
Applied in changeset commit:cdmlib|c3be000f7a4dee3e84481b0d1a020109cdf9ad59. Andreas Kohlbecker
03:45 PM task #7784 (Closed): deduplicate and harmonize ClassificationController methods
* ClassificationPortalController needs to be a subclass of ClassificationController
* duplicate and deprecated metho...
Andreas Kohlbecker
03:45 PM Revision c3be000f (cdmlib): fix #7784 deduplicating and harmonizing ClassificationController methods
Andreas Kohlbecker
01:25 PM bug #7783 (New): NamePopupEditor new buttons for genus and species
For species the genus can only be selected from existing genera. In order to use a not existing genus it is currently... Andreas Kohlbecker
01:17 PM feature request #7782 (New): for a new synonym it should be possible to change it to missaplied n...
As comfortable way to create a MAN it would be good that changeToMisappliedName can be done for not persisted synonym... Katja Luther
01:10 PM bug #7424: right click menu does not show up in name editor
the problem appears because the menu is set to disposed when a groupContainer is removed. Katja Luther
01:01 PM feature request #7594 (Closed): RegistrationWorkingsetEditor click on new serveral times
problem solved, please review. Andreas Kohlbecker
01:00 PM feature request #7594 (Resolved): RegistrationWorkingsetEditor click on new serveral times
Applied in changeset commit:cdm-vaadin|edce7749ded3f3f7f3860106f45235532afe09a2. Andreas Kohlbecker
01:00 PM Revision edce7749 (cdm-vaadin): fix #7594 RegistrationWorkingsetEditor new name button disbled wh...
Andreas Kohlbecker
11:45 AM bug #7187: ReferenceEditor: saving with DOI casues exception
bitte review Andreas Kohlbecker
11:44 AM feature request #3234 (Closed): implement cdm service method to collect SpecimensAndObservations ...
Andreas Kohlbecker
11:42 AM bug #7723 (Resolved): PhycoBank unpublished data visible in Portal
Issue fixed, only PUBLISHED registrations are visible now, please review. Andreas Kohlbecker
11:14 AM Revision b9188a94 (cdmlib): ref #7723 adding missing permission check to RegistrationServiceImpl ...
Andreas Kohlbecker
10:40 AM bug #7781 (New): original spelling is missing for accepted taxon in taxon page
Hallo,
im Portal wird das “as ....“ nicht angezeigt
Beispiel:
![](picture440-1.png)
http://caryophyllale...
Andreas Kohlbecker
09:37 AM feature request #7780 (New): improve order of nomenclatural status types
the order of nomenclatural status type should represent the importance of the type. Types used often, should be at th... Katja Luther
08:50 AM bug #7779 (New): swagger UI broken after springfox-swagger2 upgrade
after upgrading springfox-swagger2 (commit:4518f4b) the swagger UI is broken.
Presumably an upgrade of Swagger-UI i...
Andreas Kohlbecker

09/20/2018

12:10 AM bug #7449 (Resolved): E+M: Import common names with no regionFk correctly
The empty ones are all common names for ILDIS taxa:
~~~
SELECT n.FullNameCache, n.NameCache, cn.*
FROM emCommonN...
Andreas Müller
11:44 PM feature request #7769 (Resolved): E+M: Handle postulated parental species as taxon extensions
Ticket is fixed. Remaining issue is a data issue. Needs to be fixed by ERS. Andreas Müller
11:43 PM feature request #7769: E+M: Handle postulated parental species as taxon extensions
der Import für die postulated … ist fertig. Es gibt ein paar Fälle, bei denen die Namen nicht kursiv gesetzt sind. We... Andreas Müller
03:57 PM feature request #7769 (In Progress): E+M: Handle postulated parental species as taxon extensions
Andreas Müller
11:39 PM bug #7424: right click menu does not show up in name editor
Add this to current milestone as it is critical (often mentioned by users) Andreas Müller
06:11 PM Revision 621f2ae0 (cdm-dataportal): ref #7723 supressing un-published registrations in the refere...
Andreas Kohlbecker
06:10 PM Revision ae472365 (cdm-dataportal): ref #7723 supressing un-published registrations in the refere...
Andreas Kohlbecker
03:58 PM task #7455 (In Progress): E+M: Check all markers for correctnes
Andreas Müller
03:03 PM Revision 1d4ca46e (taxeditor): ref #7775 Renamed context menu label
Patrick Plitzner
03:03 PM Revision d9fbbe86 (taxeditor): ref #7775 Add option "Create new factual data set with sources"
Patrick Plitzner
03:03 PM Revision 95116a15 (taxeditor): ref #7775 i18n
Patrick Plitzner
01:56 PM bug #7778 (Closed): identifier links missing in taxon relations footnotes
Andreas Kohlbecker
01:56 PM bug #7778 (Resolved): identifier links missing in taxon relations footnotes
Applied in changeset commit:cdm-dataportal|c714960cc180ca547c9a9ddb25776c48e06f6141. Andreas Kohlbecker
12:12 PM bug #7778 (Closed): identifier links missing in taxon relations footnotes
identifier links missing when a footnote is created for taxon relations
see e.g.: http://caryophyllales.org/nepe...
Andreas Kohlbecker
01:56 PM Revision c714960c (cdm-dataportal): fix #7778 display of doi and other identifiers in taxon relat...
Andreas Kohlbecker
12:25 PM Revision 90f49fe4 (taxeditor): fix #3276: avoid exception when moving unpersisted facts
Katja Luther
12:15 PM Revision 7e1f5d18 (cdm-dataportal): fix #7742 unsubscribing other beans from event bus on dispose()
Andreas Kohlbecker
12:12 PM Revision 8e15d0fb (cdm-dataportal): ref #7599: create link and render array when description is U...
Katja Luther
12:04 PM Revision 58c1a035 (cdm-dataportal): revert last changes
Katja Luther
11:27 AM bug #7773 (Resolved): when changing rank the hybrid section is empty
Katja Luther
11:27 AM bug #7773 (Closed): when changing rank the hybrid section is empty
please review Katja Luther
11:25 AM bug #7773 (Resolved): when changing rank the hybrid section is empty
Applied in changeset commit:taxeditor|2e765343e89b57f860f7661ad06385608b991d94. Katja Luther
11:25 AM Revision 2e765343 (taxeditor): fix #7773: update only the checkboxes state when changing rank
Katja Luther
11:14 AM bug #7777 (New): NPE on login attempt after logout
login attempt after logging out
~~~
Caused by: java.lang.NullPointerException
at eu.etaxonomy.cdm.vaadin.view.L...
Andreas Kohlbecker
10:42 AM Revision f1239704 (cdm-dataportal): ref #7599: fix problem with links in descriptions
Katja Luther
09:41 AM feature request #7776 (Resolved): Add source of descriptive data set to SpecimenDescriptions adde...
Applied in changeset commit:cdmlib|74ab8c12e9283ca97969609df026ec62708aa9f5. Patrick Plitzner
08:12 AM feature request #7776 (Resolved): Add source of descriptive data set to SpecimenDescriptions adde...
If a SpecimenDescription is added to the descriptive data set the source of the data set should be copied to the spec... Patrick Plitzner
09:37 AM Revision d95dc737 (taxeditor): fix #7776 Add sources to details view for specimen descriptions
Patrick Plitzner
08:49 AM Revision 6d1422f1 (taxeditor): fix #7776 Adapt to service layer change
Patrick Plitzner
08:44 AM feature request #7599: treeView for specimen data in dataportal
Andreas Kohlbecker wrote:
> 2)
>
> diese neue Funktionalität in `modules/cdm_dataportal/includes/pre-drupal8.inc...
Andreas Kohlbecker
08:44 AM Revision 74ab8c12 (cdmlib): fix #7776 Add descriptive data set sources to specimen descriptions
Patrick Plitzner
08:10 AM feature request #7775 (New): Factual Data label issue
* ~~change context menu entry for creation of a new description to "New Factual Data Set"~~
* ~~add alternative for ...
Patrick Plitzner
07:54 AM feature request #7774 (New): Show description source for description elements
In the details view the list of sources of description elements should contain the source of the description but it s... Patrick Plitzner

09/19/2018

04:24 PM feature request #7502 (Feedback): Add further columns to bulk editor
@Andreas: Please review the first implementation of this for id and uuid Patrick Plitzner
04:23 PM Revision bcc1d18a (taxeditor): ref #7502 Add option to hide and show columns
Patrick Plitzner
04:20 PM Revision 436a661e (taxeditor): ref #2444: enable and disable binom/trinom flag
Katja Luther
04:15 PM Revision 92a795af (taxeditor): ref #7502 Add id and uuid to bulk editor
Patrick Plitzner
04:12 PM bug #7773 (Resolved): when changing rank the hybrid section is empty
When changing the rank the hybrid section is updated, but after this the section is empty. Resize or close and open t... Katja Luther
03:07 PM Revision 097d348b (taxeditor): fix #2406 Allow editing supplemental data for determination event
Patrick Plitzner
02:27 PM feature request #7674 (Resolved): Show taxon descriptions in character matrix editor
Patrick Plitzner
02:16 PM bug #7772: rename TermBase_inverseRepresentation to DefinedTermBase_inverseRepresentation
also rename attribute "term_id" Andreas Müller
02:15 PM bug #7772 (New): rename TermBase_inverseRepresentation to DefinedTermBase_inverseRepresentation
to be consistent. If other TermBase classes are relevant they need an own table anyway, similar to the handling of (d... Andreas Müller
02:11 PM Revision eeede4bd (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
02:00 PM feature request #7771 (New): Format Misapplication search results as MAN, non as accepted taxa
If a search result contains a misapplication only as a taxon related to an accepted taxon in the search filter it sho... Andreas Müller
12:28 PM Revision 51308344 (taxeditor): ref #7674 Allow editing descriptions in details view
Patrick Plitzner
10:41 AM bug #7424 (In Progress): right click menu does not show up in name editor
this problem appears only for synonyms and the accepted taxon, for missapplied names and pro parte synonyms the menu ... Katja Luther
10:15 AM bug #7541 (In Progress): Insufficient rights lead to corrupted UI handling
Katja Luther
10:14 AM bug #7541: Insufficient rights lead to corrupted UI handling
the missing possibility to set the focus on the name editor was because of a wrong permission check. Katja Luther
10:10 AM Revision 86a05229 (taxeditor): ref #7541: fix permission handling in name editor
Katja Luther
08:19 AM Revision 5e15b964 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
08:16 AM Revision d9f9f1df (cdmlib): Merge branch 'develop' into taxonDecription
Patrick Plitzner

09/18/2018

04:22 PM Revision 59d588d3 (cdmlib-apps): fix #7769 implement postulated parental species as extension
Andreas Müller
04:20 PM Revision 91f5b910 (cdmlib-apps): ref #3992 fix sec/last scrutiny for MANs
Andreas Müller
04:14 PM Revision c29d1c8f (cdmlib-apps): cleanup and improve BM validators
Andreas Müller
04:13 PM Revision ede99ce1 (cdmlib-apps): cleanup
Andreas Müller
03:37 PM feature request #7770 (New): E+M: Handle extensions like "postulated parental species" in data po...
for details see #7769.
Postulated parental species are now implemented as TaxonBase Extensions of ExtensionType "p...
Andreas Müller
03:28 PM feature request #7769 (Resolved): E+M: Handle postulated parental species as taxon extensions
Postulated parental species are Name.Notes in BM. They should become Extensions of respective type, to be shown behin... Andreas Müller
01:57 PM feature request #4129: Allow filtering by OriginalSourceType
KL an ERS:
parallel zu den Import Issues für Euro+Med arbeiten wir auch die Editor Tickets ab, die Euro+Med betref...
Andreas Müller
01:28 PM Revision ca2ed7a5 (cdm-dataportal): ref #7766 adapting test to modified data - 2.
Andreas Kohlbecker
12:48 PM feature request #7283: Improvements for alternative identifier search
~~In search result the alternative identifier and the titlecache of the reference should be displayed (behind titleCa... Katja Luther
12:43 PM feature request #7283 (In Progress): Improvements for alternative identifier search
Katja Luther
12:48 PM Revision 1b6b0ad8 (taxeditor): ref #7283: add identifier string in reference selection if searche...
Katja Luther
12:17 PM Revision 8b2a5cc0 (cdm-dataportal): ref #7766 adapting test to modified data
Andreas Kohlbecker
11:58 AM Revision 68024392 (taxeditor): ref #7674 Adjust order of matrix rows
Patrick Plitzner
11:36 AM feature request #7345 (Resolved): [E+M] Common name references selectable in TaxEditor
added a new markerType 'common name reference' and everytime a reference is added as source reference a marker of thi... Katja Luther
11:33 AM Revision 809f6237 (taxeditor): ref #7345: every reference used for a common name gets a marker 'c...
Katja Luther
11:21 AM Revision 0373fd3e (cdmlib): ref #7345: add markertype commonNameReference
Katja Luther
07:52 AM Revision 2a2911e8 (cdmlib): javadoc
Andreas Müller
07:45 AM Revision e739cccb (cdmlib): ref #7745 filter getSynonymy for subtree - fix bug in checkExistsSubt...
Andreas Müller

09/17/2018

10:55 PM Revision 2941b4e5 (cdmlib): ref #7745 filter getSynonymy for subtree - fix compile issue in cdmli...
Andreas Müller
10:09 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
I will try to write tests for the remaining issues and move them to a new ticket. Andreas Müller
04:42 AM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
I moved synonym search and classification/subtree filters to new ticket #7764 as it is not really related to the topi... Andreas Müller
03:22 AM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
The classification filter does NOT have any effect in the webservice (1). But it has in the service(2)!
I tested (...
Andreas Müller
10:03 PM bug #7745 (Resolved): Subtree filter for dataportal services
By the way there might be not implemented webservices that need to be protected, e.g. for PolytomousKeys. I think the... Andreas Müller
10:02 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> Open issues:
>
> 3) http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/7114...
Andreas Müller
09:57 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> Open issues:
>
>
> 2) http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/...
Andreas Müller
04:53 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> Open issues:
>
> tested with subtree filter `Plumbaginaceae Juss. [#t10#1986#28#] uui...
Andreas Müller
02:59 PM bug #7745 (Feedback): Subtree filter for dataportal services
Open issues:
tested with subtree filter `Plumbaginaceae Juss. [#t10#1986#28#] uuid=0ad45274-c5cf-4a95-aa1b-dc698e7...
Andreas Kohlbecker
01:33 PM bug #7745 (Resolved): Subtree filter for dataportal services
Can you please do the final review and close if everything works as expected (but we will probably get user feedback ... Andreas Müller
09:01 AM bug #7745 (Feedback): Subtree filter for dataportal services
Have to reopen. Freetext search on context does not yet work as expected. Searching for "All" returns no result with ... Andreas Müller
08:48 AM bug #7745 (Closed): Subtree filter for dataportal services
From all what I tested it works. I never got an "external" taxon. Andreas Müller
09:54 PM Revision bc9db6bf (cdmlib): ref #7745 filter getSynonymy for subtree
Andreas Müller
09:54 PM Revision d5d8d750 (cdmlib): return error if passing not existing classification uuid to taxon sea...
Andreas Müller
09:53 PM Revision 5ca67609 (cdmlib): cleanup
Andreas Müller
08:01 PM feature request #7720: use new taxonRelationshipsDTO webservice for all taxon relations
Remaining issues handled in #7766 Andreas Müller
07:52 PM feature request #7720 (Resolved): use new taxonRelationshipsDTO webservice for all taxon relations
I think this was already done in 5.3. Maybe we can close **this** ticket as duplicate as #7658 includes by title all ... Andreas Müller
08:00 PM feature request #7658 (Closed): use new taxon relationship DTO webservice in portal
Close this ticket. Remaining (and new) issues moved to #7766 Andreas Müller
05:02 PM Revision bf312a2e (taxeditor): ref #7674 Adapt to service layer change
Patrick Plitzner
05:02 PM Revision e6b120bb (cdmlib): ref #7674 Fix LIE
Patrick Plitzner
04:47 PM Revision 79f9e857 (cdm-dataportal): ref #7767 checking all possible tag types for sec microrefere...
Andreas Kohlbecker
04:33 PM bug #7768 (Duplicate): wrong tag type for secReference microcitation
duplicates #7767 Andreas Müller
04:32 PM bug #7768 (Duplicate): wrong tag type for secReference microcitation
Andreas Kohlbecker
04:32 PM bug #7767 (Resolved): Incorrect handling of secundum detail reference in formatter
Applied in changeset commit:cdmlib|0ef1a15ed1a417160deec0b112f36a12de7363dc. Andreas Müller
04:29 PM bug #7767 (Resolved): Incorrect handling of secundum detail reference in formatter
The sec detail is formatted as TagEnum.secundum not TagEnum.secMicroRef. This results in strange behavior on data por... Andreas Müller
04:32 PM Revision d969ee7a (cdmlib): cleanup
Andreas Müller
04:31 PM Revision 0ef1a15e (cdmlib): fix #7767 fix wrong TagEnum for sec detail
Andreas Müller
03:57 PM bug #7656 (Duplicate): Adapt inverse symbol for MisappliedName relationship type
Andreas Müller
03:56 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
AM an WGB:
die MANs sollten jetzt auch sichtbar sein und hoffentlich besser formatiert. Ein Problem ist noch, welc...
Andreas Müller
12:33 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
... and don't forget to adapt csv files. Andreas Müller
12:32 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
... and for pp Synonyms
~~~
UPDATE DefinedTermBase
SET symbol='⊃p.p.' , inverseSymbol = 'p.p.'
WHERE uuid= '8...
Andreas Müller
12:17 PM bug #7514 (In Progress): Change direct and inverse symbol for pro parte synonym and misapplied na...
Critical because in use already Andreas Müller
12:17 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
For misapplied names (we may think about using a larger dash, also maybe change idInVocabulary)
~~~
UPDATE Define...
Andreas Müller
03:54 PM Revision 0bc7725a (taxeditor): Fix initialization of specimen selection dialog
Patrick Plitzner
03:30 PM Revision e5926729 (cdm-dataportal): ref #7766 creating testcase - currently ignored
Andreas Kohlbecker
03:27 PM bug #7766 (Feedback): Remaining issues for using relationship DTO webservice in portal
for details see #7658
* taxonrelation footnotes missing (see #7658#note-51 for details)
* sort order of the rel...
Andreas Kohlbecker
03:04 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
Andreas Kohlbecker wrote:
> The `RegistrationWorkingsetPresenter`, `LoginPresenter` and `RegistationUI` still are no...
Andreas Kohlbecker
01:44 PM bug #7047 (In Progress): Vaadin UI and View scope beans are not always destroyed correctly
Andreas Kohlbecker
01:44 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
The `RegistrationWorkingsetPresenter`, `LoginPresenter` and `RegistationUI` still are not destroyed correctly. At lea... Andreas Kohlbecker
11:39 AM bug #7047 (Resolved): Vaadin UI and View scope beans are not always destroyed correctly
Andreas Kohlbecker
02:53 PM Revision 75d544f0 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
02:52 PM Revision 99113da9 (cdmlib): Merge branch 'develop' into taxonDecription
Patrick Plitzner
02:51 PM Revision 437d2b64 (taxeditor): minor
Katja Luther
02:22 PM task #7757 (Closed): Replace deprecated hibernate @Index annotation
The creation of a new database works as expected, the creation of the index works without exception and the search wo... Katja Luther
01:28 PM task #7757: Replace deprecated hibernate @Index annotation
Please review, e.g. by creating a new database with the new code and compare if all table names and indexes work simi... Andreas Müller
02:14 PM bug #7638 (Resolved): problem with media data missing meta data
Andreas Müller
01:50 PM feature request #7644 (Closed): Add "continued" flag to (Verbatim)Timeperiod
Andreas Kohlbecker
01:23 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
The code changes look ok. Andreas Kohlbecker
01:42 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
There is still a comma missing beetween the types if there are >1 types. Andreas Müller
01:30 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
We should think about throwing an exception in the moment when the cacher is used incorrectly (e.g. for volatile obje... Andreas Müller
01:25 PM feature request #7765 (New): Advanced UI to define the subtree filter in data portal
Follow up from #7759 Andreas Müller
01:23 PM bug #7759 (Closed): classification subtreefilter settings in portal
Yes we can close this ticket. But maybe we should create a follow up ticket for easier defining the subtree? Knowing ... Andreas Müller
12:53 PM bug #7294 (Closed): keys block can not be disabled in tabless taxon page
this obviously works now Andreas Kohlbecker
12:36 PM bug #7691 (Closed): Empty "Bibliography" section
*Nepenthes ampullacea* is now without the empty Bibliography section, so this works now! Andreas Kohlbecker
11:43 AM feature request #7408: [E+M] Support for preferred common names in data portal
This is soon required for E+M Andreas Müller
11:33 AM task #7420 (Feedback): Import for higher taxon graph for phycobank
Needs to be adapted Andreas Müller
11:28 AM Revision c172618f (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
11:28 AM Revision 9efc1615 (cdm-server): updating poms for branch'release/5.3.0' with non-snapshot versions
jenkins
11:20 AM bug #7085 (New): cdmserver logfiles getting too big, use DailyRollingFileAppender
Andreas Kohlbecker
11:19 AM Revision da30015f (cdm-webapp): Merge branch 'release/5.3.0' into develop
jenkins
11:19 AM Revision 8b425a99 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
11:19 AM Revision 4fd4a1fd (cdm-webapp): updating poms for branch'release/5.3.0' with non-snapshot versions
jenkins
11:19 AM Revision 99cdb3ef (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.3.0
jenkins
11:19 AM Revision 05bb4a08 (taxeditor): Merge branch 'release/5.3.0' into develop
jenkins
11:19 AM Revision bd05baf3 (taxeditor): Merge branch 'release/5.3.0'
jenkins
11:18 AM Revision 0367f111 (cdm-vaadin): Merge branch 'release/5.3.0' into develop
jenkins
11:18 AM Revision 0ba46ce4 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
11:14 AM Revision e65d391e (cdm-dataportal): Merge branch 'release/5.3.0' into develop
jenkins
11:14 AM Revision b3cf03c4 (cdm-vaadin): updating poms for branch'release/5.3.0' with non-snapshot versions
jenkins
11:14 AM Revision 954051e2 (cdm-dataportal): updating poms for branch'release/5.3.0' with non-snapshot ver...
jenkins
11:14 AM Revision 4c07fd1e (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0
jenkins
11:14 AM Revision 420900d7 (cdm-dataportal): release-preparation: production level css
jenkins
11:14 AM Revision 4402420e (cdmlib): Updating develop poms back to pre merge state
jenkins
11:14 AM Revision 85e49a21 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
11:14 AM Revision b035bb12 (cdmlib): Merge branch 'master' into develop
jenkins
11:14 AM Revision e2e042b7 (cdmlib): Merge branch 'release/5.3.0'
jenkins
11:11 AM bug #7756: org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice rela...
Andreas Müller wrote:
> Unfortunately the solution is not complete for includeUnpublished = true.
>
> In this cas...
Andreas Kohlbecker
10:56 AM Revision 4672679d (cdmlib): updating poms for branch'release/5.3.0' with non-snapshot versions
jenkins
10:50 AM Revision 2f2824a5 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.3.0-SN...
jenkins
10:50 AM Revision e8a4f976 (cdm-webapp): updating poms for 5.4.0-SNAPSHOT development
jenkins
10:50 AM Revision 023f2279 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.4.0-SN...
jenkins
10:50 AM Revision 43803bca (taxeditor): Updated version in pom / project files to taxeditor version : 5.4....
jenkins
10:50 AM Revision 832b8251 (taxeditor): Updated version in pom / project files to taxeditor version : 5.3....
jenkins
10:48 AM Revision dd6235d4 (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0-SNAPSHOT
jenkins
10:48 AM Revision 385bbd80 (cdm-vaadin): updating poms for 5.4.0-SNAPSHOT development
jenkins
10:47 AM Revision 3da39777 (cdm-vaadin): jenkins bumping cdmlib.version to 5.4.0-SNAPSHOT
jenkins
10:47 AM Revision 97232390 (cdm-dataportal): updating poms for 5.4.0-SNAPSHOT development
jenkins
10:47 AM Revision 1cfc433b (cdm-server): updating poms for 5.4.0-SNAPSHOT development
jenkins
10:44 AM Revision 29057537 (cdmlib): updating poms for 5.4.0-SNAPSHOT development
jenkins
10:19 AM Revision 9e76e997 (cdmlib): ref #7745 fix failing freetext search in facts freetext search
Andreas Müller
10:18 AM Revision e5dadfea (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
10:14 AM Revision 24134ae2 (cdmlib): ref #7745 fix failing freetext search in facts freetext search
Andreas Müller
10:12 AM Revision 949cae00 (cdmlib): ref #7750 Adapt services to new AssignmentStatus
Patrick Plitzner
10:03 AM Revision 351ba84b (cdmlib): adding additional testcase for QueryFactory
Andreas Kohlbecker
09:54 AM Revision 9ee6e0cd (cdmlib): ref #7745 fix failing freetext search in facts freetext search
Andreas Müller
09:48 AM Revision a15edbb0 (cdm-dataportal): temp. solution to avoid problem with dot characters in freete...
Andreas Kohlbecker
09:39 AM Revision 007bb138 (taxeditor): merge of NameEditorPropertyTester and fix NPE in ConceptContainer ...
Katja Luther
08:55 AM Revision c3f658e9 (cdmlib): Merge branch 'develop' into taxonDecription
Patrick Plitzner
04:41 AM bug #7764: Fix classification and synonym bug in taxon name freetext search
The bug introduced by #5890 and the synonym search bug should now be fixed. Please review. Andreas Müller
04:39 AM bug #7764 (Resolved): Fix classification and synonym bug in taxon name freetext search
Applied in changeset commit:cdmlib|0c3d038322ffb0292ef44c461391233c20785cec. Andreas Müller
04:25 AM bug #7764 (Resolved): Fix classification and synonym bug in taxon name freetext search
The bug is described in #5868#note-20 and previous.
* synonym search does not work with classification or subtree ...
Andreas Müller
04:39 AM Revision 0c3d0383 (cdmlib): fix #7764 revert incorrect tree parameter in search service and test ...
Andreas Müller
04:37 AM Revision 0add62bd (cdmlib): cleanup
Andreas Müller
04:36 AM Revision 38b1c817 (cdmlib): ref #7764 fix failing synonym search with classification or subtree f...
Andreas Müller

09/16/2018

01:05 AM Revision e98feeb2 (taxeditor): add English translation for par parte synonym (again after revert)
Andreas Müller
11:47 PM Revision 4e956294 (taxeditor): Revert "ref #7761: invalid designations are displayed in name edit...
This reverts commit 8e0e024c985ffbbe2ce2421270927059c9abf0cc. Andreas Müller
08:43 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
Andreas Müller wrote:
> OK, on th enew vesion of the cyprus database it works better. Especially the geo-search work...
Andreas Müller
07:09 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
OK, on th enew vesion of the cyprus database it works better. Especially the geo-search works better.
But synonym ...
Andreas Müller
02:52 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
The area search has a problem. Searching for "V*" and division1 returns NO result.
Searching for "*".
Searching ...
Andreas Müller
02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
was it like this before. Is the sorting by some kind of percentage? Andreas Müller
02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
The search seems not to be sorted. This is what I get for "V*"
Vitex
Vitis vinifera L.
Vitis
Vulpia brevis Bois...
Andreas Müller
02:37 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
For names with multiple whitespaces it is even more tricky.
*wilhelm* returns "Achillea santolinoides subsp. wilhe...
Andreas Müller
02:32 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
Wildcards in the same word seem to work. I tested with "*chi*ll*" on test.cyprus.
However, "*chi*ll*san*" to find...
Andreas Müller
02:25 PM bug #5868 (Feedback): re-establish support for wildcard at start of query string (includes the qu...
I get a warning when searching for Achil* on test.cyprus. This is probably not related to this ticket but mention thi... Andreas Müller
07:20 PM feature request #7658: use new taxon relationship DTO webservice in portal
And ofcourse the footnotes for non-MAN data are still missing. #7658#note-37 or should this be fixed already? If yes,... Andreas Müller
07:15 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
Andreas Müller
07:15 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Kohlbecker wrote:
> all mentioned bugs fixed!
Tested the 2 issues. Both work.
So the only open issue i...
Andreas Müller
05:41 PM feature request #7658: use new taxon relationship DTO webservice in portal
This problem is not release critical. We can fix it in 5.4. Maybe only moving up ppSyn to top would be nice but if no... Andreas Müller
05:39 PM feature request #7658: use new taxon relationship DTO webservice in portal
The sort order is still not correct. We should first have pro parte/partial synonyms, then invalid designations, then... Andreas Müller
05:37 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
all mentioned bugs fixed! Andreas Kohlbecker
05:08 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Andreas Müller wrote:
> > "auct." (appended phrase) does not show up, e.g.
> >
> > * "...
Andreas Kohlbecker
05:00 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name...
Andreas Kohlbecker
03:49 PM feature request #7658: use new taxon relationship DTO webservice in portal
Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name" or "partial Misapplied ... Andreas Müller
03:30 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> "auct." (appended phrase) does not show up, e.g.
>
> * "Achillea santolina" , non Test ...
Andreas Müller
03:27 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
Andreas Müller
03:27 PM feature request #7658: use new taxon relationship DTO webservice in portal
"auct." (appended phrase) does not show up, e.g.
* "Achillea santolina" , non Test , but should be "Achillea ...
Andreas Müller
05:36 PM Revision 45aaf1fe (cdm-dataportal): depuplication of p.p.MAN and partial MAN with test
Andreas Kohlbecker
05:29 PM Revision e56e5d1c (cdm-dataportal): adding test case for no sensu but with Combination Authors an...
Andreas Kohlbecker
04:50 PM Revision 7400fb33 (cdmlib): allow nom status parsing without name (with ICNAFP as default)
Andreas Müller
04:49 PM Revision 60a3cd56 (cdmlib): ref #7761 add isInvalidDesignation to TaxonRelationshipType
Andreas Müller
04:27 PM Revision 891e2f48 (cdmlib): ref #7761 add isInvalidDesignation to TaxonRelationshipType
Andreas Müller
04:27 PM Revision 47bf9558 (cdmlib): make authenticationManager lazy to avoid circals during start up
Andreas Müller
04:17 PM Revision 26c22583 (taxeditor): add English translation for par parte synonym
Andreas Müller
03:25 PM Revision bafcf277 (cdm-dataportal): adapting xpaths in test framework to modified rendering of fo...
Andreas Kohlbecker

09/15/2018

03:15 PM task #7762: E+M: Handle "{non ..." annotations for misapplied names currently handled as appended...
~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
...
Andreas Müller
03:02 PM task #7762 (New): E+M: Handle "{non ..." annotations for misapplied names currently handled as ap...
... check the names against existing names with exactly same reference and replace name if possible, also remove appe... Andreas Müller
03:14 PM bug #7763: E+M (post?): Deduplicate "[non ..." blocking names for synonyms
~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
...
Andreas Müller
03:13 PM bug #7763 (New): E+M (post?): Deduplicate "[non ..." blocking names for synonyms
These are handled in BerlinModelTaxonRelationshipImport.handleSynonymNotes
About 150 cases, many of them easy to h...
Andreas Müller

09/14/2018

09:33 PM Revision a0557101 (cdm-dataportal): fix #5868 avoiding unneccesary "complex phrase" queries, fixe...
Andreas Kohlbecker
09:31 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
please review Andreas Kohlbecker
09:30 PM bug #5868 (Resolved): re-establish support for wildcard at start of query string (includes the qu...
Applied in changeset commit:cdmlib|d6bdbc3d4a6d81dd3298913e1a31b64d76b88211. Andreas Kohlbecker
09:30 PM Revision d6bdbc3d (cdmlib): fix #5868 restoring freetext search with leading wildcard and with em...
Andreas Kohlbecker
07:05 PM bug #7745 (Resolved): Subtree filter for dataportal services
Andreas Müller
03:16 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Kohlbecker wrote:
> Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs ...
Andreas Kohlbecker
03:14 PM Revision a9dc4b35 (cdm-dataportal): ref #7658 other relationship reprentation based on DTOs fully...
Andreas Kohlbecker
03:12 PM Revision 31ab4cf9 (cdm-dataportal): ref #7686 Change label for no type status
Patrick Plitzner
02:27 PM Revision 7070571d (taxeditor): ref #7761: adapt property tester
Katja Luther
02:23 PM bug #7686: Specimen title cache issues in data portal specimen table
The full titleCache is now available and no warning anymore: http://test.e-taxonomy.eu/dataportal/preview/cyprus/cdm_... Andreas Müller
01:36 PM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
The titleCache issue is fixed.
I do not get the warnings on my local copy of the cyprus data base so I am not able...
Patrick Plitzner
01:59 PM Revision 9657122e (cdmlib): ref #7760 Show name authors for type designations
Patrick Plitzner
01:45 PM Revision b7299e98 (taxeditor): ref #7761: fragment.xmi and plugin.properties file for invalid des...
Katja Luther
01:43 PM Revision 8e0e024c (taxeditor): ref #7761: invalid designations are displayed in name editor and d...
Katja Luther
01:42 PM Revision 619ccb21 (cdmlib): ref #7745 fix failing pathFrom if subtree is null
Andreas Müller
01:39 PM bug #7752 (Duplicate): accepted name context menu blocked after adding first misapplication
Patrick Plitzner
01:39 PM Revision 7118b734 (cdmlib): ref #7761: add isInvalidDeisgnation() method to taxon
Katja Luther
01:37 PM feature request #7761 (New): invalid designations should be displayed like MAN in name editor
The taxon relationship invalid designation should be displayed like MAN and pro parte synonyms in editor. Katja Luther
01:34 PM Revision 0b4ac33b (cdm-dataportal): ref #7686 Fix NPE during specimen title generation
Patrick Plitzner
01:34 PM Revision d961cf30 (cdm-dataportal): ref #7759 adding more subtreefilter url patterns
Andreas Kohlbecker
01:24 PM Revision 87bf25dd (cdm-dataportal): ref #7686 Show titleCache as title of specimen page
Patrick Plitzner
12:28 PM Revision 4518f4b5 (cdmlib): ref #7745 upgrading springfox-swagger2 to circumvent bug related to @...
Andreas Kohlbecker
11:35 AM bug #7047 (Feedback): Vaadin UI and View scope beans are not always destroyed correctly
this should also be fixed now that #7742 is solved
Andreas Kohlbecker
11:25 AM Revision d1e04696 (cdmlib): cleanup
Andreas Müller
11:24 AM Revision d3dd860c (cdmlib): ref #7745 switch of required in getTaxonNodes
Andreas Müller
11:24 AM Revision 1251ffed (cdmlib): ref #7745 childNodesOf implemented
Andreas Müller
11:15 AM bug #7759: classification subtreefilter settings in portal
fertig! das filtern im Portal scheint nun zu funktionieren.
Andreas Kohlbecker
11:14 AM Revision 6e2a9ba9 (cdm-dataportal): ref #7759 adding more subtreefilter url patterns and commenti...
Andreas Kohlbecker
11:10 AM Revision 3769d06b (cdmlib): ref #7745 some exception handling for subtree filter
Andreas Müller
10:59 AM Revision fe2906f6 (cdmlib): de-dublicating doGetTaxonNodes() controller methods
Andreas Kohlbecker
10:07 AM Revision a8337363 (cdmlib): ref #7745 fixing workaround for override methods
Andreas Müller
09:43 AM Revision 5f218626 (cdmlib): ref #7745 workaround for duplicate TaxonPortalController getTaxonNode...
Andreas Müller
09:36 AM Revision a6150f24 (cdmlib): ref #7745 workaround for duplicate TaxonController get Method (for te...
Andreas Müller
09:24 AM Revision ba0ae53c (cdmlib): ref #7745 workaround for duplicate TaxonController get Method (for te...
Andreas Müller

09/13/2018

11:08 PM Revision d0df75bd (cdmlib): ref #7745 add subtree filter to missing methods (childNodesOf is stil...
Andreas Müller
11:05 PM Revision 8616c840 (cdmlib): cleanup
Andreas Müller
05:57 PM bug #7745: Subtree filter for dataportal services
Also the following webservices need to get a subtree filter:
* /portal/taxon/{uuid}
* /portal/taxon/{uuid}/taxo...
Andreas Kohlbecker
05:46 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> the query parameter should be the same in all webservice uris: `subtree`
DONE: commit...
Andreas Kohlbecker
05:43 PM bug #7745: Subtree filter for dataportal services
the query parameter should be the same in all webservice uris: `subtree` Andreas Kohlbecker
05:45 PM Revision 905f70dc (cdmlib): ref #7745 harmonizing subtree query parameters
Andreas Kohlbecker
05:44 PM Revision 9bce681c (cdmlib): ref #7759 additional TaxonNode webservice endpoint and solving loggin...
Andreas Kohlbecker
05:37 PM bug #7759 (Resolved): classification subtreefilter settings in portal
Applied in changeset commit:cdm-dataportal|80d21b78a68c7c45042e9b14b1e628e62cc7c1fc. Andreas Kohlbecker
03:49 PM bug #7759 (Closed): classification subtreefilter settings in portal
As fist step we need a simple subtreefilter field which takes the UUID of a TaxonNode.
This uuid is to be used as...
Andreas Kohlbecker
05:37 PM Revision 80d21b78 (cdm-dataportal): fix #7759 implementing classification subtree filtering
Andreas Kohlbecker
04:49 PM feature request #7760 (New): Specimen compressed table issues
**Andreas**:
~~~
hier scheint mir noch einiges offen. V.a. nehme ich Norbert und Tilo mit in cc, weil sie ja für ...
Patrick Plitzner
04:41 PM Revision 25fc25ca (cdm-dataportal): ref #7686 Change label of specimen page link
Patrick Plitzner
03:46 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRe...
this method is also user for the synonyms, so this is not solved or obsoletd by #7658 Andreas Kohlbecker
03:43 PM feature request #7658: use new taxon relationship DTO webservice in portal
Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs fehlen noch - kommt in 3.4! Andreas Kohlbecker
03:16 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
Andreas Müller
03:12 PM feature request #7658: use new taxon relationship DTO webservice in portal
please review again Andreas Kohlbecker
03:42 PM Revision 18c71cd1 (cdm-dataportal): ref #7658 using the taxonRelationDTO for other relationshipt ...
Andreas Kohlbecker
03:17 PM task #7758 (New): Manual cleanup after E+M import
The following tasks should be done manually after final E+M import:

* remaining issues from logfile
* deduplic...
Andreas Müller
03:11 PM Revision 23ebb91f (cdm-dataportal): ref #7658 fixing final problems in MAN display related to app...
Andreas Kohlbecker
12:38 PM bug #7756 (Feedback): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webs...
Unfortunately the solution is not complete for includeUnpublished = true.
In this case you again get an NPE as you...
Andreas Müller
12:01 PM Revision dc231846 (cdmlib): fix #7757 first freetext search test working for subtree filter
Andreas Müller
11:38 AM Revision 0f5ab2e8 (cdmlib): cleanup
Andreas Müller
11:37 AM task #7757 (Resolved): Replace deprecated hibernate @Index annotation
Applied in changeset commit:cdmlib|2b2a66ac3dcc84707a5c5bc631b1eb0241701cf6. Andreas Müller
11:37 AM task #7757 (Closed): Replace deprecated hibernate @Index annotation
... from model classes Andreas Müller
11:37 AM Revision 2b2a66ac (cdmlib): fix #7757 removed all deprecated hibernate @Index (and @Table) annota...
Andreas Müller
10:27 AM Revision 514ee70c (cdmlib): ref #7745 implement treeindex search in freetext search (untested)
Andreas Müller
10:25 AM Revision 1dc8e923 (cdmlib): cleanup
Andreas Müller
10:20 AM Revision 67d89439 (cdmlib): rename AbstractRelationshipEdge.relationshipType to be more generic
Andreas Müller

09/12/2018

12:38 AM bug #7745: Subtree filter for dataportal services
Subtree filter is now implemented for (rankSpecific)rootNotes and simple taxon search. API exists also for freetext s... Andreas Müller
12:36 AM bug #7745 (In Progress): Subtree filter for dataportal services
Andreas Müller
12:00 AM Revision 8b00105b (cdmlib): ref #7745 add subtree parameter to freetext search methods
Andreas Müller
11:01 PM Revision d2f1dbf2 (cdmlib): ref #7745 fix bug in queries with subtree, some first test and cleanup
Andreas Müller
09:29 PM bug #7756 (Closed): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webser...
Andreas Kohlbecker
03:46 PM bug #7756 (Resolved): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webs...
Applied in changeset commit:cdmlib|273b0cdc0b621b1a4314631f83bf9bba9491f9ea. Andreas Kohlbecker
03:45 PM bug #7756: org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice rela...
the bug was introduced by the commit:e08838f0 for #3560 Andreas Kohlbecker
03:44 PM bug #7756 (Feedback): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webs...

http://api.cybertaxonomy.org/corvidae/portal/taxon/147cb0d4-0f0e-4ba4-a234-e0b55d51677a/subtree/media.json?type=Ima...
Andreas Kohlbecker
07:28 PM Revision bc3200a9 (cdmlib): ref #7745 fix syntax for node.treeindex in query
Andreas Müller
06:52 PM Revision dce01054 (cdmlib): ref #7745 subtree filter to taxon search (add missing parameter for q...
Andreas Müller
05:07 PM Revision 603aecbe (cdmlib): ref #7666 doGetTaxonRelationshipsDTO groupMisapplications paramter de...
Andreas Kohlbecker
03:53 PM Revision 26ab7583 (cdmlib): ref #7745 add subtree filter to taxon search (not yet tested for subt...
Andreas Müller
03:47 PM feature request #7755: Implement detail page for field unit
Andreas Müller wrote:
> We may think about changing to ".../occurrence/uuid" if we want to have a common access po...
Andreas Kohlbecker
02:20 PM feature request #7755: Implement detail page for field unit
Andreas Kohlbecker wrote:
> i think the specimens page should be extended to also show the fieldUnit data as well as...
Andreas Müller
02:05 PM feature request #7755: Implement detail page for field unit
Andreas Kohlbecker wrote:
> i think the specimens page should be extended to also show the fieldUnit data as well as...
Katja Luther
01:28 PM feature request #7755: Implement detail page for field unit
i think the specimens page should be extended to also show the fieldUnit data as well as the data on all originals. H... Andreas Kohlbecker
12:12 PM feature request #7755 (New): Implement detail page for field unit
we also need a detail page for field units. At the moment we only can display the details of derived units.
Katja Luther
03:46 PM Revision 273b0cdc (cdmlib): fix #7756 allowig direction to be null again
Andreas Kohlbecker
01:37 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Does not yet work for pro parte and partial MANs.
This is also still an open issue.
Andreas Müller
01:33 PM feature request #7658: use new taxon relationship DTO webservice in portal
Deduplication should include appendedPhrase part I think (this is also not yet implemented in the server side misappl... Andreas Müller
12:55 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Exception for second MAN of Achillea santolinoides Lag.
>
>
> for this data on test.cyp...
Andreas Müller
12:49 PM feature request #7658: use new taxon relationship DTO webservice in portal
The MANs are still unsorted. In the above example you can see that Achillea santolina sensu Chrtek ... is before Achi... Andreas Müller
12:45 PM feature request #7658: use new taxon relationship DTO webservice in portal
I tested the above behavior. The reason is that secDetail differs (or misses in one case). secDetail is part of the s... Andreas Müller
12:32 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
Deduplication still does not work if everything is similar except for sensu and sensu detail. In the following screes... Andreas Müller
01:29 PM feature request #7753 (Closed): use TaxonRelationshipFormatter for MAN and pro parte synonyms in ...
is fixed now. Katja Luther
12:23 PM feature request #7753 (Feedback): use TaxonRelationshipFormatter for MAN and pro parte synonyms i...
~~"&" is not yet masked and not shown (e.g. as separator for the last member in a team)~~
done
Andreas Müller
09:48 AM feature request #7753 (Closed): use TaxonRelationshipFormatter for MAN and pro parte synonyms in ...
This replaces the implementation #6681 Katja Luther
01:07 PM feature request #7335 (Closed): Allow editing of pro parte and partial synonyms in the same way a...
This is fixed. Katja Luther
12:38 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRe...
This can probably be closed either as duplicate or as rejected (we use the TaxonRelationFormatter instead).
Can you ...
Andreas Müller
12:37 PM Revision 35f94062 (taxeditor): english label for pro parte synonym added
Katja Luther
12:25 PM Revision d78360bd (taxeditor): ref #7753: mask &
Katja Luther
12:10 PM feature request #7599: treeView for specimen data in dataportal
as long as the detail page for field units is not implemented the link to detail page of field unit is removed. Katja Luther
12:08 PM Revision a0f26798 (cdm-dataportal): remove link to detail page for fieldUnits
Katja Luther
12:02 PM bug #3535 (Closed): Automatically update descriptive view if content changed
Katja Luther
12:01 PM bug #7754 (New): tab order should be the same after saving of moved descriptions
copied from #3535:
It would be nice if the tap order of the editors could be the same as before saving. Currently th...
Katja Luther
11:54 AM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > When creating a species a new Taxon needs to be created for t...
Andreas Kohlbecker
11:52 AM feature request #7415 (Closed): Implement ExternalLinks for OriginalSources in TaxEditor
Katja Luther
10:59 AM Revision 19f1d8b4 (cdmlib): ref #7745 add subtree filter also to ClassificationPortalListController
Andreas Müller
10:43 AM Revision c8d2852f (taxeditor): ref #7753: use Formatter in nameEditor for MAN and pro parte synonyms
Katja Luther
10:33 AM Revision cc1a7529 (cdmlib): ref #7745 fix recursive call in deprecated method
Andreas Müller
09:59 AM Revision 18457b45 (taxeditor): revert use of TaxonRelationshipFormatter in NameEditro
Katja Luther
09:35 AM Revision 55f79f52 (taxeditor): fix nomenclatural status problems
Katja Luther
09:31 AM Revision 185155f8 (cdmlib): ref #7745 implement subtree filter for ClassificationController.rankS...
Andreas Müller
09:12 AM Revision e54b05e2 (taxeditor): add eu.etaxonomy.cdm.strategy.cache to export packages in cdmlib
Katja Luther
08:15 AM bug #7752: accepted name context menu blocked after adding first misapplication
I think this is a duplicate for a known issue since e4.
Patrick, could you please link to the according ticket and...
Andreas Müller

09/11/2018

10:27 PM Revision edeb0e69 (cdmlib-apps): remove Cyprus user import
Andreas Müller
07:05 PM feature request #7599: treeView for specimen data in dataportal
thank you for fixing the issues so far. Unfortunately there are still some:
1)
on this page the *Locality* shoul...
Andreas Kohlbecker
12:02 PM feature request #7599: treeView for specimen data in dataportal
the php problems are solved and the NPE in CollectionDto as well Katja Luther
08:23 AM feature request #7599: treeView for specimen data in dataportal
There are still problems in **tree view** mode, see http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datapo... Andreas Kohlbecker
06:40 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
finally fully solved, please review Andreas Kohlbecker
06:39 PM Revision 439f531a (cdm-dataportal): ref #7658 MAN deduplication by full MAN representation except...
Andreas Kohlbecker
06:19 PM bug #7752 (Duplicate): accepted name context menu blocked after adding first misapplication
after adding a first misapplication in the name editor the context menu for the accepted name is no longer showing up... Andreas Kohlbecker
05:04 PM feature request #7594 (New): RegistrationWorkingsetEditor click on new serveral times
Andreas Kohlbecker
04:58 PM bug #7742 (Closed): vaadin view presenters not disposing ehcaches and object references in event ...
Andreas Kohlbecker
04:56 PM bug #7742: vaadin view presenters not disposing ehcaches and object references in event bus which...
Applied in changeset commit:cdm-vaadin|c6b02b73bf43ef58ae109d89adb17fc4058d46b4. Andreas Kohlbecker
10:35 AM bug #7742 (Resolved): vaadin view presenters not disposing ehcaches and object references in even...
Applied in changeset commit:cdm-vaadin|5b7fa02addec342fc2190abc52f66430aefc5533. Andreas Kohlbecker
04:56 PM Revision c6b02b73 (cdm-vaadin): fix #7742 moving inner class SearchFilter into own class file Reg...
Andreas Kohlbecker
04:28 PM bug #3535 (Feedback): Automatically update descriptive view if content changed
This seems all to be fixed or moved to new ticket.
Only open issue is the tab order which may change by saving (#...
Andreas Müller
03:23 PM feature request #7751 (New): Refactor drop down menus to allow empty selection
Currently we are using the trash can to remove the selection of a drop down. It is more intuitiv to have an empty ele... Patrick Plitzner
03:21 PM feature request #7750 (New): Allow multi selection for taxon assignment filter in specimen tree ...
The following options should be available:
* Individuals Associations
* Type Designation
* Determination
The ...
Patrick Plitzner
03:18 PM feature request #7749 (New): Add "Link with taxon selection" as an icon to the toolbar of the spe...
Patrick Plitzner
02:58 PM Revision 21cbdd69 (taxeditor): use TaxonRelationshipFormatter for NameEditor
Katja Luther
02:54 PM Revision dd3ea7ac (cdmlib): ref #7666 replace StringUtils dependency by correct one
Andreas Müller
02:51 PM bug #6742 (Closed): IAE when using "Link with taxon selection" in Specimen-Editor
This works now.
We discussed to move the menu entry to an icon to make it more intuitive and present for the user...
Andreas Müller
02:24 PM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor
This works now and can be closed. Only we could also change the label "External Link Type" to "Type", as this is clea... Andreas Müller
09:10 AM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor
I set this ticket to resolved and create a new ticket for the reduced spaces between the fields. Katja Luther
02:16 PM feature request #6559 (Closed): Order misapplied names in name editor
Works fine. It can be discussed if setting the new elements to beginning is expected behavior. But for now we can lea... Andreas Müller
02:09 PM Revision 013e3b2f (cdmlib): ref #7666 allow formatting without name part (2. test)
Andreas Müller
02:09 PM Revision 51249b12 (cdmlib): cleanup
Andreas Müller
02:03 PM Revision b127d201 (cdmlib): ref #7666 allow formatting without name part
Andreas Müller
01:59 PM Revision 127f0e03 (taxeditor): move mediaToggleButton to the top
Katja Luther
01:43 PM Revision 3ee27021 (taxeditor): find all occurrences of Misapplikation in german text
Katja Luther
01:36 PM Revision 82f2be03 (cdm-vaadin): fix #7742 unsubscribing other beans from event bus on dispose()
Andreas Kohlbecker
01:18 PM feature request #7726 (Closed): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in...
I checked at some places and it looks well. I think if we find places with to long labels we should decide in future ... Andreas Müller
01:12 PM Revision fba774b1 (cdm-vaadin): fix #7742 unsubscribing from event bus when disposing presenter
Andreas Kohlbecker
12:19 PM Revision 7ecaccda (taxeditor): Change default taxon row color
Patrick Plitzner
11:53 AM Revision 31190572 (taxeditor): minor
Katja Luther
10:53 AM Revision d6f9e690 (taxeditor): nomenclaturalStatus is created without status type
Katja Luther
10:35 AM Revision 5b7fa02a (cdm-vaadin): fix #7742 disposing view, presenter and ehcaches when popupviews ...
Andreas Kohlbecker
09:49 AM Revision 106e1cf9 (cdm-dataportal): ref #7599: fix php problems and code cleaning
Katja Luther
09:11 AM feature request #7747 (New): reduce space between fields in external links section
copied from #7415:
Can we reduce the space between the 3 fields? Usually I like this but here I think it is better t...
Katja Luther
08:57 AM Revision 8963d4f9 (cdmlib): avoid NPE when creating CollectionDto
Katja Luther
08:50 AM Revision 098bc626 (taxeditor): Misapplication should be called Fehlanwendung in german
Katja Luther

09/10/2018

05:31 PM bug #7686: Specimen title cache issues in data portal specimen table
On the specimen page still the Class UUID formatting occurs.
Also there are 2 warning now.
Example from test.cy...
Andreas Müller
05:27 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
> Offenbar wird die Zeile “xType of” nur ausgegeben, wenn die Typuskategorie eingegeben wurde? Das ist bei mehrere Sp... Andreas Müller
05:07 PM bug #7746 (New): NPE when deleting volatile DescriptionBase
In Facts View, when I tried to delete a volatile (not yet persisted) description I got the following exception
~...
Andreas Müller
04:29 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> & handling does not yet work correctly in teams. Probably a formatter issue #7666.
>
> ![...
Andreas Müller
04:23 PM Revision c331fa7e (cdmlib): ref #7666 fix team formatting (incorrect index of ambersand)
Andreas Müller
02:01 PM Revision 5794ab10 (taxeditor): add empty element in status type combo and sort by idInVocabulary
Katja Luther
01:50 PM feature request #6559 (Resolved): Order misapplied names in name editor
now the MAN, pro parte synonyms and invalid designations are sorted by titleCache, new elements are set at the beginn... Katja Luther
12:43 PM feature request #6559 (In Progress): Order misapplied names in name editor
Katja Luther
01:48 PM bug #6742 (Resolved): IAE when using "Link with taxon selection" in Specimen-Editor
Applied in changeset commit:taxeditor|cb86d7ee94765fcb197a9bd26f896e0a429d09ac. Patrick Plitzner
01:48 PM Revision cb86d7ee (taxeditor): fix #6742 Fix Link with taxon selection in specimen tree editor
Patrick Plitzner
01:47 PM Revision 54cc3ca6 (taxeditor): ref #6559: order misapplied names, pro parte synonyms and invalid ...
Katja Luther
01:40 PM Revision 653849b4 (cdmlib): ref #6559: get and ordered list of MAN, proparte synonyms and invalid...
Katja Luther
11:49 AM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" ...
I disabled wrapping for all detail view elements. Please also click through some other details views. I think this lo... Patrick Plitzner
11:47 AM Revision 8a715e5c (taxeditor): ref #7726 Disable wrapping for detail view elements
Patrick Plitzner
09:07 AM Revision 87e04225 (taxeditor): ref #7674 Adjust to service layer change
Patrick Plitzner
09:04 AM Revision c4b3991f (cdmlib): ref #7674 Adjust description tag depending on marker type
Patrick Plitzner
09:04 AM Revision 32b89663 (cdmlib): ref #7674 Move aggregation service method to data set service
Patrick Plitzner
08:46 AM Revision e0bbe0fa (taxeditor): ref #7674 Add specific style and label for each taxon description ...
Patrick Plitzner

09/09/2018

11:33 PM bug #7745 (Resolved): Subtree filter for dataportal services
This is a bit similar to the publish flag filter for data portal (#3560) and other services (#7492) Andreas Müller
10:16 PM task #7420 (Resolved): Import for higher taxon graph for phycobank
please review results of import on test.cdm_phycobank Andreas Müller
10:15 PM Revision f37a28e7 (cdmlib-apps): latest changes to EuroMedActivator (including changes in TaxonRe...
Andreas Müller
10:14 PM Revision 4298d81b (cdmlib-apps): fix Berlin Model Occurrence and TaxonRelation import validators
Andreas Müller
10:13 PM Revision e890a76e (cdmlib-apps): cleanup
Andreas Müller
10:12 PM Revision fd334511 (cdmlib-apps): ref #3992 remove logging of last scrutiny taxa with no standard ...
Andreas Müller
10:09 PM Revision 9eca8b4a (cdmlib-apps): ref #7420 define WorksheetName as config parameter (needed for P...
Andreas Müller
10:07 PM Revision f36c41f1 (cdmlib-apps): ref #7420 adding phycobank as source
Andreas Müller
10:05 PM Revision 2b1e32ea (cdmlib): ref #7420 add config parameter to getWorksheetname for Excel import
Andreas Müller
05:59 PM bug #7744 (New): The Concept View does not have Label
Other views do have a label which makes it easier to recognize for which object the respective data are shown (e.g. S... Andreas Müller

09/07/2018

03:50 PM Revision 3a465563 (taxeditor): ref #7674 Add context menu to add taxon descriptions
Patrick Plitzner
03:49 PM Revision 599c51cd (cdmlib): ref #7674 Add service method for creating taxon description for data set
Patrick Plitzner
02:59 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > this is already i18n because CdmStore.getDefaultLanguage() returns ...
Katja Luther
02:08 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
~~Also please move "type" to top.~~ Andreas Müller
02:07 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
Can we reduce the space between the 3 fields? Usually I like this but here I think it is better to be compact. Andreas Müller
02:06 PM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor
Andreas Müller
02:06 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
~~The labels may be shortened "External Link URI" -> "URI" . Same for Type. The "External links" header makes it clea... Andreas Müller
02:04 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
Katja Luther wrote:
> this is already i18n because CdmStore.getDefaultLanguage() returns the default language define...
Andreas Müller
01:48 PM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor
Katja Luther
12:45 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
Andreas Müller wrote:
> For DescriptionElementSources the ExternalLinks appear now above Name in Source. This is bad...
Katja Luther
12:25 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
this is already i18n because CdmStore.getDefaultLanguage() returns the default language defined in the preferences or... Katja Luther
09:38 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
Katja Luther wrote:
> I can't reproduce this exception, I tested with nightly and rem_conf_am
The exception still...
Andreas Müller
09:21 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
For DescriptionElementSources the ExternalLinks appear now above Name in Source. This is bad for UX. We need to put i... Andreas Müller
02:58 PM Revision 411130a5 (taxeditor): enable i18n for description of external links
Katja Luther
02:42 PM Revision b937b2de (taxeditor): ref #7415: move type at top and shorter labels
Katja Luther
01:48 PM bug #3535 (Resolved): Automatically update descriptive view if content changed
now only once the user is asked for saving and text is adapted. Katja Luther
12:53 PM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> Now, changes in the source are saved properly. Changes in the target are not saved even when...
Katja Luther
12:50 PM bug #3535: Automatically update descriptive view if content changed
Also the request for saving now appears twice if both taxa are dirty. Once before selecting the target, and then afte... Andreas Müller
12:32 PM bug #3535 (Feedback): Automatically update descriptive view if content changed
Andreas Müller
12:31 PM bug #3535: Automatically update descriptive view if content changed
Now, changes in the source are saved properly. Changes in the target are not saved even when choosing "OK" Andreas Müller
12:28 PM bug #3535: Automatically update descriptive view if content changed
It would be nice if the tap order of the editors could be the same as before saving. Currently the order changes whic... Andreas Müller
11:44 AM bug #3535: Automatically update descriptive view if content changed
A minor issue: the processes often take time which is acceptable but an hourglass that the process is still ongoing i... Andreas Müller
01:45 PM Revision 7971c018 (taxeditor): ref #3535: only ask once for saving
Katja Luther
01:33 PM bug #7500 (Closed): Can't open both related accepted taxa of reused MAN
Katja Luther
01:22 PM bug #7500 (Feedback): Can't open both related accepted taxa of reused MAN
I slightly changed the text of the selection dialog. Can you pleas check if this is ok.
I think it should appear o...
Andreas Müller
11:13 AM bug #7500 (Resolved): Can't open both related accepted taxa of reused MAN
Katja Luther
11:13 AM bug #7500 (Feedback): Can't open both related accepted taxa of reused MAN
Andreas Müller wrote:
> Now, when trying to open the MANs in a Nameeditor I always get
>
> ![](picture898-1.png)...
Katja Luther
11:10 AM bug #7500 (Resolved): Can't open both related accepted taxa of reused MAN
Applied in changeset commit:taxeditor|a5dfa142a6e4540690c1b4c7f7ed3eaf176272c8. Katja Luther
10:30 AM bug #7500 (Feedback): Can't open both related accepted taxa of reused MAN
Now, when trying to open the MANs in a Nameeditor I always get
![](picture898-1.png)
Maybe I am wrong but also...
Andreas Müller
01:29 PM Revision afbc0b6b (cdmlib): fixing ehcache.xml
Andreas Kohlbecker
01:27 PM Revision 8dbe55e4 (cdm-vaadin): cleaning up old commented stuff
Andreas Kohlbecker
01:26 PM Revision cbfdc57b (cdmlib): ref #7742 disposable CdmCachers
Andreas Kohlbecker
01:24 PM Revision 5b44f518 (cdmlib): typo
Andreas Kohlbecker
01:24 PM Revision 210948b1 (cdmlib): removing commented config line
Andreas Kohlbecker
01:19 PM Revision f291b6f3 (taxeditor): ref #7500 adapt text for selection message
Andreas Müller
01:17 PM Revision 0e56fac3 (cdmlib): Revert "ref #7729 removing unused ehcache.xml - all config is code ba...
This reverts commit cf4ebe93a29635ab57e6ec066c32cdb344bbd297. Andreas Kohlbecker
01:16 PM bug #7743 (Rejected): test application contexts without <context:annotation-config />
rejected since the remote test context is not a full context Andreas Kohlbecker
01:14 PM bug #7743: test application contexts without <context:annotation-config />
add the configuration:
~~~xml
<context:annotation-config />
<context:component-scan base-package="eu/eta...
Andreas Kohlbecker
01:01 PM bug #7743 (Rejected): test application contexts without <context:annotation-config />
the configuration `<context:annotation-config/>` to enable the annotation based spring configuration is missing in so... Andreas Kohlbecker
01:05 PM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" ...
Now again we have a line break for some labels which is not good for UX and not necessary I think.
Maybe this is OS ...
Andreas Müller
12:19 PM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" ...
Patrick Plitzner
11:19 AM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" ...
Again, in my original mail I mentioned to maybe change both, Nomenclatural title and Nomenclatural cache to Nomencl. ... Andreas Müller
10:23 AM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" ...
Patrick Plitzner
09:15 AM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" ...
As mentioned in the original mail (please always copy these mails completely - or at least the part that is relevant ... Andreas Müller
12:54 PM feature request #7715 (Closed): Description sources should be handled same as DescriptionElement
Andreas Müller
11:27 AM feature request #7715: Description sources should be handled same as DescriptionElement
changed the label of descriptions and descriptionelements sources to sources Katja Luther
11:10 AM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement
Applied in changeset commit:taxeditor|b717449e43d02a06fe22849e383f8a6e922682aa. Katja Luther
09:48 AM feature request #7715: Description sources should be handled same as DescriptionElement
Generally this ticket is ready and can be closed. Andreas Müller
09:48 AM feature request #7715 (Feedback): Description sources should be handled same as DescriptionElement
Andreas Müller wrote:
> The section is called "Description Sources" we should either relabel them "References" as in...
Andreas Müller
12:51 PM Revision 733c1cfb (taxeditor): ref #3535: add check for dirty target when move description or des...
Katja Luther
12:44 PM Revision 89f9d5a7 (taxeditor): ref #7415: move name in source behind external links
Katja Luther
12:24 PM Revision ef02d142 (taxeditor): fix english text for open MAN without taxon included in classifica...
Katja Luther
12:21 PM Revision 1deb1e26 (taxeditor): Change label for warning
Andreas Müller
12:19 PM Revision 602ff4ba (taxeditor): ref #7726 Shorten label of nomenclatural title
Patrick Plitzner
11:49 AM Revision 272b6c5d (taxeditor): handle all MAN and Synonyms in setInputForRelatedTaxa to open in n...
Katja Luther
11:33 AM bug #7742 (In Progress): vaadin view presenters not disposing ehcaches and object references in e...
Andreas Kohlbecker
11:32 AM bug #7742 (Closed): vaadin view presenters not disposing ehcaches and object references in event ...
Andreas Kohlbecker
11:32 AM Revision aa9f06a0 (taxeditor): change message if accepted name of MAN is not included in any clas...
Katja Luther
11:12 AM Revision cf4ebe93 (cdmlib): ref #7729 removing unused ehcache.xml - all config is code based
Andreas Kohlbecker
11:12 AM Revision 0af671fa (cdm-vaadin): ref #7729 removing unused ehcache.xml - all config is code based
Andreas Kohlbecker
11:10 AM Revision a5dfa142 (taxeditor): fix #7500: correct handling of MAN when opening in nameEditor
Katja Luther
11:10 AM Revision b717449e (taxeditor): fix #7715: label for sources of descriptions and descriptionelemen...
Katja Luther
11:09 AM bug #7729 (In Progress): potential ehcache CacheConfiguration problem
Andreas Kohlbecker
11:07 AM bug #7729: potential ehcache CacheConfiguration problem
There are a couple of ehcaches being used in the cdmlib and in cdm-vaadin which need different configurations:
1) ...
Andreas Kohlbecker
11:09 AM Revision f5b2b4ba (cdmlib): adjusting loglevel of bean initializers
Andreas Kohlbecker
11:09 AM Revision 8b9e2e71 (cdmlib): ref #7729 setting maxEntriesLocalHeap for the cdmDefaultCache and act...
Andreas Kohlbecker
10:51 AM bug #6850 (Closed): NPE when clearing label of "kind of" term in TermEditor
Andreas Müller wrote:
> Much better now. Only the Supplemental data do not automatically synchronize their label. Do...
Patrick Plitzner
09:54 AM bug #6850 (Feedback): NPE when clearing label of "kind of" term in TermEditor
Much better now. Only the Supplemental data do not automatically synchronize their label. Don't know if this is a gen... Andreas Müller
10:50 AM feature request #7741 (New): Refresh supplemental data view title when editing terms
Copied from #6973 and #6850
When editing the label of terms in the details view the label is not reflected immedia...
Patrick Plitzner
10:23 AM Revision ae60a433 (taxeditor): ref #7726 Shorten label of nomenclatural cache
Patrick Plitzner
10:17 AM feature request #7740 (New): Extract RCP styling to css file
Many colors, font sizes and font styles can be defined declaratively in an external CSS file instead of in Java.
S...
Patrick Plitzner
10:06 AM bug #7739 (New): If a volatile synonym is changed to a MAN it is not necessary to save first
Currently when creating a MAN by first creating a synonym and then changing it to MAN WITHOUT saving the synonym befo... Andreas Müller
09:39 AM Revision e4f9e245 (taxeditor): ref #7415 fix NPE in ExternalLinksElement
Andreas Müller
09:18 AM feature request #7717 (Closed): Implement "continued" in TimePeriod UI
It works well now and is also intuitive IMO. Andreas Müller
09:06 AM bug #7738 (Closed): NPE for cancel in Use existing media dialog of specimen tree editor
I did not really test explicitly but the code looks reasonable Andreas Müller
08:57 AM bug #7738: NPE for cancel in Use existing media dialog of specimen tree editor
exception was
~~~
login : admin
editor version : 5.3.0.201809042248
server : test.e-taxonomy.eu (edit-test) / r...
Andreas Müller
08:30 AM bug #7738 (Resolved): NPE for cancel in Use existing media dialog of specimen tree editor
Applied in changeset commit:taxeditor|62079f0371543d34bde1fe550ecee2c0f7ea13eb. Patrick Plitzner
08:30 AM bug #7738 (Closed): NPE for cancel in Use existing media dialog of specimen tree editor
Patrick Plitzner
08:35 AM Revision e7e44c01 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
08:33 AM Revision 5c243ba9 (cdmlib): Merge branch 'develop' into taxonDecription
Patrick Plitzner
08:30 AM Revision 62079f03 (taxeditor): fix #7738 Fix potential NPE
Patrick Plitzner

09/06/2018

12:17 AM bug #7736 (Duplicate): reusing media in the DescriptionElementDetailsView
Andreas Müller
12:02 AM bug #7736 (Duplicate): reusing media in the DescriptionElementDetailsView
reusing media in the DescriptionElementDetailsView is not yet possible but should (needs discussion how the multiple ... Andreas Müller
12:09 AM bug #7737 (New): Reference Details view does NOT give a multiple usage warning
copied from #7706
testing other such warnings I realized that for references the warnings appear in the dialog but...
Andreas Müller
12:07 AM bug #7733: show warning for multiple usage of media for SpecimenMedia
remove first part of description as it has nothing to do with MediaSpecimen. It is handled in #7736 now in more complete Andreas Müller
09:35 PM bug #7733 (New): show warning for multiple usage of media for SpecimenMedia
copied from #7706:
the warning is not shown in the Specimen Tree Editor for Media specimen. This is probably becau...
Katja Luther
09:39 PM feature request #7706 (Closed): Warning for reused Media is missing
create several follow up tickets (#7732, #7733, #7734) Katja Luther
09:39 PM bug #7735 (New): reusing media in the DescriptionElementDetailsView
copied from #7706:
reusing media in the DescriptionElementDetailsView is not yet possible but should (the multiple...
Katja Luther
09:38 PM bug #7734 (New): show warning for multiple usage also if the reference is not persisted yet
copied from #7706:
when the new reference to a persisted and linked media object is not yet saved no warning is sh...
Katja Luther
09:33 PM bug #7732 (New): layout issues for the media details view
copied from #7706:

* layout: the form type changer is not moved down and now appears beside the warning. This ...
Katja Luther
09:29 PM bug #7728 (Closed): NPE in wizard when changing type of reference
Katja Luther
09:29 PM bug #7728: NPE in wizard when changing type of reference
works fine. This was something like a copy&paste error because only the indention should be removed Katja Luther
03:54 PM bug #7728 (Resolved): NPE in wizard when changing type of reference
Applied in changeset commit:taxeditor|656cc90a6ba5dbe24426373b9043fe92413bdcb2. Patrick Plitzner
03:52 PM bug #7728: NPE in wizard when changing type of reference
The class DateElement has a DisposeListener that disposes of the cdmFormFactory. But this is not how it should be han... Patrick Plitzner
03:18 PM bug #7728: NPE in wizard when changing type of reference
Patrick Plitzner wrote:
> It actually does not have anything to do with which type you choose or if it is an in-refe...
Patrick Plitzner
03:02 PM bug #7728: NPE in wizard when changing type of reference
It actually does not have anything to do with which type you choose or if it is an in-reference. The error can be rep... Patrick Plitzner
02:58 PM bug #7728: NPE in wizard when changing type of reference
Patrick Plitzner wrote:
> I cannot reproduce this. What exactly did you do?
>
> I opened a taxon in the name edi...
Patrick Plitzner
02:58 PM bug #7728: NPE in wizard when changing type of reference
open a reference and create a new inReference, set the type to webPage, after finish go back to the first reference a... Katja Luther
02:56 PM bug #7728: NPE in wizard when changing type of reference
I cannot reproduce this. What exactly did you do?
I opened a taxon in the name editor -> Opened the reference wiz...
Patrick Plitzner
01:04 PM bug #7728: NPE in wizard when changing type of reference
This problem is caused by a cdmFormFactory which is set to disposed. at the moment we handle widget is disposed excep... Katja Luther
12:59 PM bug #7728 (Closed): NPE in wizard when changing type of reference
Hallo Katja,
Beim Öffnen einer In-Referenz einer Referenz, die selber bereits im Dialog geöffnet ist, kam reproduz...
Katja Luther
09:06 PM bug #3535 (Resolved): Automatically update descriptive view if content changed
Katja Luther
09:06 PM bug #3535: Automatically update descriptive view if content changed
this ticket is fixed, created a new ticket for not moving image galleries ( #7731) and for the same moving functional... Katja Luther
10:22 AM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> Note: when moving full description to another taxon the new label of the description is: "El...
Katja Luther
10:14 AM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> Now, the fact is not removed from the old taxon. Only closing and reopening the taxon remove...
Katja Luther
09:40 AM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> Note: the selection dialog for the target taxon does show the "start" taxon too. This is not...
Katja Luther
09:33 AM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> Katja Luther wrote:
> > this fix was only for the menu entry in taxonnavigator, but I will ...
Katja Luther
08:42 AM bug #3535: Automatically update descriptive view if content changed
But then we should separately allow to also move media/image galleries. Otherwise it is difficult to handle images wh... Andreas Müller
08:05 AM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> By the way, moving facts also moves image galleries. For the user this might be unexpected a...
Andreas Kohlbecker
09:06 PM bug #7731 (New): service method for moving descriptions should not move image galleries
this is a follow up ticket for #3535#note-16 Katja Luther
09:04 PM feature request #7730 (New): Add moving functionality to media view
this is a follow up ticket from #3535#note-18 Katja Luther
08:54 PM feature request #7433 (In Progress): new service method to get specimen by genetic AccessionNumber
Katja Luther
08:52 PM bug #5394 (Rejected): Test if synonyms are imported correctly with ABCD import
Katja Luther
08:44 PM feature request #7694 (Duplicate): cdmlight export output of types needs to be adapted
Katja Luther
10:15 AM feature request #7694 (In Progress): cdmlight export output of types needs to be adapted
This is already in progress I guess, together with #7700. How far are these duplicates and how far is this ticket res... Andreas Müller
08:43 PM Revision 42c0aaf3 (cdmlib): code cleaning
Katja Luther
07:23 PM Revision 782d98d9 (cdmlib): add TypeDesignationComparator
Katja Luther
06:53 PM Revision e7f22f90 (cdmlib): fix TypeDesignationSetManagerTest by sorting typeDesignations
Katja Luther
06:35 PM feature request #7599 (In Progress): treeView for specimen data in dataportal
Katja Luther
06:35 PM feature request #7599: treeView for specimen data in dataportal
the php issues should be solved and the tree view is shown now. Katja Luther
06:11 PM feature request #7599: treeView for specimen data in dataportal
further minor php problems at the example of http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/ta... Andreas Kohlbecker
02:38 PM feature request #7599: treeView for specimen data in dataportal
php notice in http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/1ad7630a-290b-464f-99e3-43... Andreas Kohlbecker
02:19 PM feature request #7599: treeView for specimen data in dataportal
Andreas Kohlbecker wrote:
> sollte eigentlich nicht in `_description_list_group_add()` hinein. Besser den link sch...
Andreas Kohlbecker
02:18 PM feature request #7599: treeView for specimen data in dataportal
2)
diese neue Funktionalität in `modules/cdm_dataportal/includes/pre-drupal8.inc`
~~~php
if (strpos($desc...
Andreas Kohlbecker
06:30 PM Revision 9a124e57 (cdm-dataportal): fix problems in pages.inc
Katja Luther
06:18 PM bug #7729 (In Progress): potential ehcache CacheConfiguration problem
the below warnings are reported frequently. Interestingly it happens often short before the server freezes due to out... Andreas Kohlbecker
06:09 PM Revision 59781fc6 (cdm-dataportal): fix problems in pages.inc
Katja Luther
03:54 PM Revision 7b690399 (taxeditor): ref #7728 Removed unused toolkit member
Patrick Plitzner
03:53 PM Revision 656cc90a (taxeditor): fix #7728 Fix initialisation of form toolkit in DateElement
Patrick Plitzner
03:50 PM Revision ca542a03 (cdmlib): ref #7644 fix getYear() in test
Andreas Müller
03:45 PM feature request #7658: use new taxon relationship DTO webservice in portal
& handling does not yet work correctly in teams. Probably a formatter issue #7666.
![](picture944-1.png)
Andreas Müller
03:38 PM feature request #7658: use new taxon relationship DTO webservice in portal
Deduplication must NOT take place if the rel. sec. differs (e.g. only one of the MANs has a rel. sec.). This is not y... Andreas Müller
03:30 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Strange, with this entry:
>
> the webservice even does not return a second entry though i...
Andreas Müller
03:27 PM feature request #7658: use new taxon relationship DTO webservice in portal
Strange, with this entry:
![](picture38-1.png)
the webservice even does not return a second entry though it exi...
Andreas Müller
02:46 PM feature request #7658: use new taxon relationship DTO webservice in portal
But it works when adding an explicit sensu reference. But explicit sensu is not a requirement. Andreas Müller
02:44 PM feature request #7658: use new taxon relationship DTO webservice in portal
Exception for second MAN of Achillea santolinoides Lag.
![](picture970-1.png)
for this data on test.cyprus
!...
Andreas Müller
02:31 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
Does not yet work for pro parte and partial MANs. Andreas Müller
03:44 PM bug #6276: Nomenclatural references show parsed date string instead of publication year
Sorry, wrong ticket Andreas Müller
03:36 PM Revision de769b0a (cdmlib): adapt OccurrenceController to changes in OccurrenceService
Katja Luther
03:24 PM Revision dabc3001 (cdmlib): cleanup
Andreas Müller
03:21 PM Revision 484a120f (cdmlib): minor
Katja Luther
03:14 PM Revision 86459d9e (cdmlib): fix TypeDesignationSetManager, use values of map of typeDesignations ...
Katja Luther
03:01 PM Revision f710aa8b (cdmlib): ref #7644 handle continued in getYear()
Andreas Müller
02:41 PM Revision 3f6d782a (cdmlib): ref #7599: further improvement for specimenDtos
Katja Luther
01:52 PM bug #7585 (Closed): RegistrationCuratorRoleProbe does not only check the ROLE_CURATION
Andreas Kohlbecker
01:51 PM bug #7585 (Resolved): RegistrationCuratorRoleProbe does not only check the ROLE_CURATION
Applied in changeset commit:cdm-vaadin|e080f6ded006655d94a94b876eb9c1fb2143d60f. Andreas Kohlbecker
01:51 PM Revision e080f6de (cdm-vaadin): fix #7585 replacing RegistrationCuratorRoleProbe by RoleProber
Andreas Kohlbecker
01:49 PM feature request #6351 (Closed): jenkins cdmserver-index-job.groovy supports http basic authentic...
Andreas Kohlbecker
11:56 AM feature request #6351 (Worksforme): jenkins cdmserver-index-job.groovy supports http basic authe...
this is already implemented Andreas Kohlbecker
01:37 PM bug #6850 (Resolved): NPE when clearing label of "kind of" term in TermEditor
Patrick Plitzner
08:49 AM bug #6850: NPE when clearing label of "kind of" term in TermEditor
Let's call it different: show the current titleCache, and for a completely empty term the Class+UUID will be generate... Andreas Müller
08:42 AM bug #6850: NPE when clearing label of "kind of" term in TermEditor
So you want the default titleCache (class + UUID) to be shown everywhere except the text field, correct? Patrick Plitzner
01:36 PM Revision 2aa1d458 (taxeditor): ref #6850 Fix label for null value
Patrick Plitzner
01:36 PM Revision 59d36b0c (cdmlib): fix bugs in abcd import
Katja Luther
01:19 PM feature request #7680: Refactor TaxonNodeDetailElement
the functionality is available now, but as described in the comment above we would need the functionality to create a... Katja Luther
12:53 PM feature request #7717: Implement "continued" in TimePeriod UI
Andreas Müller wrote:
> Best would be to not show the "end" line at all if continued == true
I think it is cleare...
Katja Luther
12:51 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
Applied in changeset commit:taxeditor|a1fbc94af7ad08a851eb87b92e7b8aa34b1f6a89. Katja Luther
12:51 PM Revision a1fbc94a (taxeditor): fix #7717: color of end fields in partial element are grey if disa...
Katja Luther
12:30 PM bug #7500: Can't open both related accepted taxa of reused MAN
now the chooseAcceptedTaxon dialog also used if a taxon is used as MAN and accepted taxon Katja Luther
11:47 AM bug #7500: Can't open both related accepted taxa of reused MAN
?? Andreas Müller
12:30 PM Revision f572c5c1 (taxeditor): fix #7500: adapt chooseAcceptedTaxon dialog also for taxa used as ...
Katja Luther
12:30 PM Revision 957dce80 (taxeditor): ref #7717: parse field should not be updated if it is the event so...
Katja Luther
12:15 PM feature request #7727 (New): Server availability indication in TaxEditor
Split from #5209:
We may also think about having a status line icon/label which permanently (every 2-3 seconds) ch...
Andreas Müller
12:06 PM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" ...
Applied in changeset commit:taxeditor|9f90442961085aa4cca97151bca3ba19ac77520f. Patrick Plitzner
12:05 PM feature request #7726 (Closed): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in...
Patrick Plitzner
12:06 PM Revision 9f904429 (taxeditor): fix #7726 Change label of abbrev cache
Patrick Plitzner
12:05 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRe...
is this a duplicate for #7658? If yes it can be closed as duplicate. Andreas Müller
11:58 AM Revision 308f7bf5 (taxeditor): Remove unused methods
Patrick Plitzner
11:56 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
This is critical for version 5.4 as needed for E+M Andreas Müller
11:53 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
Why has this been moved? It was for review. Andreas Müller
11:51 AM feature request #7725: Implement server availability check
Andreas Kohlbecker wrote:
> Using the same service endpoint, with a HTTP HEAD requests you will check for the availa...
Andreas Müller
10:48 AM feature request #7725: Implement server availability check
> We may also want to have 2 services, one for checking availability of the server (without DB check) and one checkin... Andreas Kohlbecker
10:31 AM feature request #7725 (New): Implement server availability check
Split from #5209:
Applications may need to check if the server is available.
These services could be used for t...
Patrick Plitzner
11:47 AM Revision 750e9e69 (cdmlib): fix TypeDesignationSetManager
Katja Luther
11:09 AM Revision bb76e361 (cdmlib): getTypeDesignations in TypeDesignationSetManager should return a coll...
Katja Luther
10:49 AM Revision 86bb4af4 (cdmlib): move createShortCitation to ReferenceCacheStrategy
Katja Luther
10:47 AM feature request #5209: Improve server availability check
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Shouldn't we split this ticket. This one stays a "how to handle...
Andreas Müller
10:31 AM feature request #5209: Improve server availability check
Andreas Müller wrote:
> Shouldn't we split this ticket. This one stays a "how to handle the exception" best ticket.
...
Patrick Plitzner
10:22 AM feature request #5209: Improve server availability check
Shouldn't we split this ticket. This one stays a "how to handle the exception" best ticket.
And then we need a sep...
Andreas Müller
08:05 AM feature request #5209: Improve server availability check
Copied from #6355:
In the above case the interruption took place during lazy initialization:
~~~
login : w.ber...
Patrick Plitzner
08:04 AM feature request #5209 (New): Improve server availability check
Copied from #6355:
Andreas M.:
"wie schon öfters erwähnt, sollten wir hier ja versuchen, eine nutzerfreundlichere...
Patrick Plitzner
08:01 AM feature request #5209 (Duplicate): Improve server availability check
Patrick Plitzner
10:22 AM Revision 96bf5e90 (taxeditor): ref #3535: change move message for facts
Katja Luther
10:13 AM Revision 03c03694 (taxeditor): ref #3535: update both name editors after moving description oder ...
Katja Luther
09:57 AM bug #5430 (New): P2 update of Taxonomic Editor bundled with JRE does not work
Patrick Plitzner
09:51 AM feature request #7669 (In Progress): Greece import Willing images
Andreas Müller
09:39 AM Revision 5bfd26ae (taxeditor): ref #3535: source taxon should not be selectable for move descript...
Katja Luther
09:39 AM Revision 62214ec0 (taxeditor): ref #3535: source taxon should not be selectable for target of mo...
Katja Luther
08:01 AM task #6736 (Duplicate): Handle server not available user friendly
Patrick Plitzner
08:01 AM bug #6355 (Duplicate): Improve message if server is down
Patrick Plitzner

09/05/2018

11:24 PM bug #7677 (Closed): Nomenclatural Status is always set to nom illeg in details view
It seems to work now as expected. Andreas Müller
04:27 PM feature request #7717 (Feedback): Implement "continued" in TimePeriod UI
Andreas Müller
03:57 PM feature request #7717: Implement "continued" in TimePeriod UI
Best would be to not show the "end" line at all if continued == true Andreas Müller
03:55 PM feature request #7717: Implement "continued" in TimePeriod UI
Also I would move the continued flag up, before "End" as it is something inbetween start and end. This may make the b... Andreas Müller
03:50 PM feature request #7717: Implement "continued" in TimePeriod UI
I don't know if this is related, but when entering data into the parse field now, the cursor always jumps to the begi... Andreas Müller
12:59 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
Katja Luther
12:59 PM feature request #7717 (New): Implement "continued" in TimePeriod UI
the continued flag is implemented in editor now. at the moment the end date is removed when the continued flag is set... Katja Luther
12:56 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
Applied in changeset commit:taxeditor|f36a68ee91d7e3c3c8365b13507c25af4da48b81. Katja Luther
03:56 PM feature request #7599: treeView for specimen data in dataportal
Review Result:
1)
* method `create_cdm_specimen_or_observation()` needs either be named `render_cdm_specimen_o...
Andreas Kohlbecker
03:42 PM feature request #7599 (Resolved): treeView for specimen data in dataportal
starting review
Andreas Kohlbecker
03:43 PM bug #3535: Automatically update descriptive view if content changed
By the way, moving facts also moves image galleries. For the user this might be unexpected as for the user it is not ... Andreas Müller
03:39 PM bug #3535: Automatically update descriptive view if content changed
Katja Luther wrote:
> this fix was only for the menu entry in taxonnavigator, but I will have a look at the problems...
Andreas Müller
03:31 PM bug #3535: Automatically update descriptive view if content changed
Upps, even more critical. Even selecting "Cancel" does not cancel the operation but still saves the target data and a... Andreas Müller
03:18 PM bug #3535: Automatically update descriptive view if content changed
this fix was only for the menu entry in taxonnavigator, but I will have a look at the problems in factual data view. Katja Luther
02:55 PM bug #3535: Automatically update descriptive view if content changed
If the target taxon is dirty and unsaved and gives a warning. It says ".... all other unsaved changes will be saved".... Andreas Müller
02:46 PM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> Now, the fact is not removed from the old taxon. Only closing and reopening the taxon remove...
Andreas Müller
02:43 PM bug #3535: Automatically update descriptive view if content changed
Note: ~~~when moving full description to another taxon the new label of the description is: "Elements moved from ..."... Andreas Müller
02:41 PM bug #3535: Automatically update descriptive view if content changed
Moving the full description seems to work correctly. Andreas Müller
02:36 PM bug #3535 (Feedback): Automatically update descriptive view if content changed
~~~Now, the fact is not removed from the old taxon. Only closing and reopening the taxon removes it.
I tested this f...
Andreas Müller
02:32 PM bug #3535: Automatically update descriptive view if content changed
Note: ~~the selection dialog for the target taxon does show the "start" taxon too. This is not needed and should be f... Andreas Müller
03:42 PM bug #7722 (Closed): NamePopupEditor: validation not working for rank genus
perfect ! Wolf-Henning Kusber
02:47 PM bug #7722: NamePopupEditor: validation not working for rank genus
solved, please review Andreas Kohlbecker
02:46 PM bug #7722 (Resolved): NamePopupEditor: validation not working for rank genus
Applied in changeset commit:cdm-vaadin|e8e0ad3ba36e287dc5fc1c398bc505f3f0a5a38e. Andreas Kohlbecker
02:04 PM bug #7722: NamePopupEditor: validation not working for rank genus
It could be that people validate higher rank names, too. Wolf-Henning Kusber
03:05 PM feature request #7700: use TypeDesignationSetManager for creating typedesignation string in cdmli...
the mail from WB:
Hallo,
habe mir das angesehen. Es gibt ja praktisch 3 Fälle.
1. Gesamte information ist im ...
Katja Luther
03:03 PM feature request #7700 (Resolved): use TypeDesignationSetManager for creating typedesignation stri...
Katja Luther
03:03 PM Revision 12266827 (cdmlib): ref #7700: fide and parenthesis are separated separators in taggedText
Katja Luther
03:01 PM Revision d847eb88 (cdmlib): ref #7700: use TypedesignationSetManager for creating TypeDesignatio...
Katja Luther
02:53 PM Revision 0405e234 (cdmlib): ref #7700: use TypedesignationSetManager for creating TypeDesignatio...
Katja Luther
02:46 PM Revision e8e0ad3b (cdm-vaadin): fix #7722 removing rank limitation for validations in name editor
Andreas Kohlbecker
02:27 PM bug #6742: IAE when using "Link with taxon selection" in Specimen-Editor
I did not get the IAE anymore but also could not create any result. I tried to
* Select or not select a taxon in ...
Andreas Müller
01:59 PM bug #4573 (Closed): Handle duplicate username, group or grantedAuthority correctly
Works fine Andreas Müller
01:49 PM feature request #7712 (Closed): PhycoBank UI Reference detail size
perfect! Wolf-Henning Kusber
01:48 PM feature request #7624 (Closed): Note field for Reference in Vaadin
Perfect! Wolf-Henning Kusber
11:11 AM feature request #7624: Note field for Reference in Vaadin
please review Andreas Kohlbecker
01:45 PM bug #7724 (New): PatternSyntaxException in GrantedAuthority search dialog
See stacktrace. I looked at the code and wondered why first ALL GAs are loaded and then compared via regex. Is this s... Andreas Müller
01:41 PM Revision 0c40f20e (taxeditor): cleanup
Andreas Müller
01:22 PM feature request #6475 (Closed): Make specimen tree editor collapsable and expandable
Seems to work (though it took me some time to find the buttons. But it is general RCP way of putting them so it shoul... Andreas Müller
12:56 PM Revision f36a68ee (taxeditor): fix #7717: add continued flag to timeperiod ui
Katja Luther
12:48 PM bug #6850: NPE when clearing label of "kind of" term in TermEditor
Generally this seems to work now. I also could not reproduce.
Only related issue: with empty label the label refre...
Andreas Müller
12:37 PM bug #7371 (Closed): Deleting Polytomous Key throws NPE
Works fine with nightly. Andreas Müller
12:22 PM bug #7371 (Resolved): Deleting Polytomous Key throws NPE
... upps sorry, looks like I tested with production on test server , will test again Andreas Müller
12:21 PM bug #7371 (Feedback): Deleting Polytomous Key throws NPE
I still get
~~~
login : admin
editor version : 5.2.1
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
...
Andreas Müller
12:35 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
Katja Luther wrote:
> if the continued flag is set and then setContinued(false) is called, this.end should be set to...
Andreas Müller
12:24 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
if the continued flag is set and then setContinued(false) is called, this.end should be set to null Katja Luther
09:22 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
Can you please review? (Katja can you maybe also shortly review?) Andreas Müller
12:03 PM bug #7622 (Closed): RegistrationWorkingsetEditor: navigating to other pages with fresh registrati...
no empty registrations since this has been fixed. Andreas Kohlbecker
12:02 PM bug #7622: RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leave...
this was originally a dataportal ticket which has erroneously be overwritten with other information. There is a new t... Andreas Kohlbecker
12:01 PM bug #7667: NoHttpResponseException for large queries in bulk editor
Difficult to test. Currently the test server does not respond very often. So it can't be decided if this is related.
...
Andreas Müller
11:54 AM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement
Applied in changeset commit:taxeditor|d2c62a2b15901df2b03ad04d2f384f523d781492. Katja Luther
09:20 AM feature request #7715: Description sources should be handled same as DescriptionElement
The section is called "Description Sources" we should either relabel them "References" as in DescriptionElementDetail... Andreas Müller
09:14 AM feature request #7715: Description sources should be handled same as DescriptionElement
Generally we need to discuss if moving the sources from Supplemental Data to Details View means removing them at firs... Andreas Müller
09:12 AM feature request #7715 (Feedback): Description sources should be handled same as DescriptionElement
Generally it works, but there comes a selection dialog for choosing the source type. This needs to be removed as for ... Andreas Müller
11:54 AM Revision d2c62a2b (taxeditor): fix #7715: set title to reference and remove selection dialog for ...
Katja Luther
11:52 AM bug #7699: NPE when searching for specimen in bulk editor
Added AK as this is maybe a general ticket about handling of disposed in CdmTransientEntityCacher so might be interes... Andreas Müller
11:50 AM bug #7699: NPE when searching for specimen in bulk editor
It still exists sometimes
~~~
login :
editor version : 5.3.0.201809042248
server : ()
schema version :
os...
Andreas Müller
11:35 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
I can't reproduce this exception, I tested with nightly and rem_conf_am Katja Luther
10:43 AM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor
Adding an external link throws NPE
~~~
login : admin
editor version : 5.3.0.201809042248
server : test.e-taxon...
Andreas Müller
09:14 AM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor
Katja Luther
11:25 AM bug #7294: keys block can not be disabled in tabless taxon page
review after release Andreas Kohlbecker
11:25 AM bug #7691: Empty "Bibliography" section
review after release Andreas Kohlbecker
11:21 AM bug #7582 (Duplicate): prevent from creating empty registrations
Andreas Kohlbecker
11:12 AM bug #7702 (Closed): corrupted hibernate session after previous error during save operation
hard to review - time will show - closing ticket Andreas Kohlbecker
10:58 AM feature request #7412 (Closed): Allow editing supplemental data for DescriptiveDataSets
Seems to work as expected Andreas Müller
10:58 AM Revision 7a187dd5 (cdm-dataportal): adapting Cichorieae_SearchTest to modified tagged text proces...
Andreas Kohlbecker
10:18 AM Revision 2cdf2e95 (cdm-server): adjusting loglevel of bean initializers
Andreas Kohlbecker
10:15 AM bug #7484 (Closed): Protected titleCache handling not correct in Reference detail view
This specific issue seems to work consistent now.
General review of titleCache behavior is still open for review ...
Andreas Müller
09:58 AM Revision 370ab182 (cdmlib): avoiding too extensive logging by commenting all hardcoded loglevels
Andreas Kohlbecker
09:39 AM Revision d3719f12 (cdm-dataportal): skipping table cell creation for null media in compose_cdm_me...
Andreas Kohlbecker
09:01 AM feature request #7706: Warning for reused Media is missing
Is there a Media editing dialog at all? I was searching to check if the warning also works there but didn't find any.... Andreas Müller
08:50 AM feature request #7706 (Feedback): Warning for reused Media is missing
Generally the ticket can be closed as it works if the above issues are either closed or moved to a new ticket. Andreas Müller
08:49 AM feature request #7706: Warning for reused Media is missing
Generally it works but there are some questions regarding various issues:
* layout: the form type changer is not ...
Andreas Müller
08:48 AM Revision 361d492e (cdm-dataportal): adapting tests to modified synonymy page dom
Andreas Kohlbecker
07:56 AM bug #7698: CCE when creating new datasource
works fine Andreas Müller
07:55 AM bug #7698 (Closed): CCE when creating new datasource
Andreas Müller

09/04/2018

06:03 PM bug #7723 (Resolved): PhycoBank unpublished data visible in Portal
Unpublished data visible in Portal, not in scientific name search, but as list under a reference including published ... Wolf-Henning Kusber
06:02 PM Revision 644a7b6e (cdm-dataportal): fixing typeDesignation sort order
Andreas Kohlbecker
04:34 PM bug #7722 (Feedback): NamePopupEditor: validation not working for rank genus
the validation has explicitly limited to ranks at SpeciesOrBelow. Is it sufficient to also include genus an below or ... Andreas Kohlbecker
02:03 PM bug #7722 (Closed): NamePopupEditor: validation not working for rank genus
Validation button of genus without function (basionym, replaced syn. okay)
![] (picture672-1.png)
Wolf-Henning Kusber
04:01 PM bug #7582 (Resolved): prevent from creating empty registrations
this has been solved mean while. Add according commits to the issue and close it. Andreas Kohlbecker
04:00 PM feature request #7712: PhycoBank UI Reference detail size
fixed, please review Andreas Kohlbecker
04:00 PM feature request #7712 (Resolved): PhycoBank UI Reference detail size
Applied in changeset commit:cdm-vaadin|8626f58493068136e66ff322a6834ce24cf53310. Andreas Kohlbecker
12:03 PM feature request #7712: PhycoBank UI Reference detail size
place citation detail below reference field and make both 100%wide Andreas Kohlbecker
04:00 PM Revision 8626f584 (cdm-vaadin): fix #7712 more space for the citation detail in name editor
Andreas Kohlbecker
03:17 PM feature request #7624 (Resolved): Note field for Reference in Vaadin
Applied in changeset commit:cdm-vaadin|85743e03023024ec6a9d0449fa91aa6bc08f5f6e. Andreas Kohlbecker
03:17 PM Revision 85743e03 (cdm-vaadin): fix #7624 notes field for the RegistrationPopupEditor implemented
Andreas Kohlbecker
03:16 PM feature request #7600: public setters for entity collections
with commmit:a55fe58a I implemented the suggested setter for annotations. This implementation is not generic and shou... Andreas Kohlbecker
03:14 PM Revision a55fe58a (cdmlib): ref #7600 implementing setAnnotations()
Andreas Kohlbecker
02:30 PM Revision 13bd883d (cdm-dataportal): ref #7658, ref #7720 restoring css rule for .relation_sign
Andreas Kohlbecker
01:59 PM bug #7721 (New): Contraint Violation Exception on saving Reference Popup Editor

der Fehler trat auf, als in einem Workingset in Vaadin in einer Referenz eine Section angelegt worden war (Submitte...
Andreas Kohlbecker
01:58 PM feature request #7706 (Resolved): Warning for reused Media is missing
please review Katja Luther
01:57 PM Revision ad31468a (taxeditor): ref #7706: add warning if media is referenced by more than one object
Katja Luther
01:49 PM feature request #7644 (Resolved): Add "continued" flag to (Verbatim)Timeperiod
Applied in changeset commit:cdmlib|72b0e291fb98b3dcab357b7b5f0160bb8818a000. Andreas Müller
09:52 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
We may not need a model change for this.
Instead we use a defined constant end date 9999-12-30 witch stands for "c...
Andreas Müller
01:49 PM Revision 72b0e291 (cdmlib): fix #7644 fix failing test in parser and add "continued" parsing to a...
Andreas Müller
01:44 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
implementation complete, please review Andreas Kohlbecker
01:43 PM feature request #7720 (Resolved): use new taxonRelationshipsDTO webservice for all taxon relations
for details see #6682
since completion of #7658 the taxonRelationshipsDTO is used for misapplied names and invlali...
Andreas Kohlbecker
01:36 PM Revision 27c31249 (cdm-dataportal): ref #7658 test for invalid designation
Andreas Kohlbecker
01:24 PM bug #7719 (New): UX Problems with context menu access in Bulkeditors
in den Bulkeditoren kann man keine neuen Entities anlegen, ohne dass die Tabelle zu sehen ist.
Klickt man nicht auf...
Andreas Kohlbecker
12:58 PM Revision f659b3dd (cdm-dataportal): work in grogress - unfinished
Andreas Kohlbecker
12:58 PM Revision 67c8cca9 (cdm-dataportal): ref #7658 miapplied names and invalid designations modified t...
Andreas Kohlbecker
12:58 PM Revision a01ad6fe (cdm-dataportal): typos
Andreas Kohlbecker
12:58 PM Revision 2978b0c8 (cdm-dataportal): ref #7658 moving all tagged text functions to separate file
Andreas Kohlbecker
12:58 PM Revision 116fb348 (cdm-dataportal): ref #7658 work in progress with errors
Andreas Kohlbecker
12:58 PM Revision 83dc60b9 (cdm-dataportal): ref #7658 adapting cdm_taxonRelationships() to new taxon rela...
- test case
- extending tagged text functions
- adapting misapplied name redering
Andreas Kohlbecker
12:05 PM Revision c02da888 (cdm-dataportal): revert small bug coming with merge of feature/specimenportal
Katja Luther
11:17 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
Andreas Kohlbecker wrote:
> the NARROW_NO_BREAK is now a constant in the UTF8 class.
>
> But what about the
>
...
Andreas Müller
10:59 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
Andreas Müller wrote:
> should we change Assignee of this ticket?
No need to, the NARROW_NO_BREAK is now a consta...
Andreas Kohlbecker
09:45 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
should we change Assignee of this ticket? Andreas Müller
09:44 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
When implementing:
>add NARROW NO-BREAK (\u202F) after doubtful marker as requested in #5492
can you please add...
Andreas Müller
10:57 AM Revision 530b3394 (cdmlib): ref #7666 NARROW NO-BREAK in UTF8 class
Andreas Kohlbecker
10:46 AM Revision b3ac03bf (cdm-dataportal): merge develop into feature branch
Katja Luther
10:38 AM bug #7718 (New): Vaadin Drop Down List from existing publications
Problem 1
In einem WorkingSet (Buch) sind Dutzende Arten neu beschieben. Die Buchreferenz sollte ein mal vorhanden ...
Wolf-Henning Kusber
10:23 AM feature request #7717: Implement "continued" in TimePeriod UI
for the expected behavior see also TimePeriodTest.testContinued and .testToStringTimePeriod Andreas Müller
09:55 AM feature request #7717 (Closed): Implement "continued" in TimePeriod UI
The continued flag should be alternative to the end date. As described in #7644 either the flag is set or we have an ... Andreas Müller
10:22 AM Revision 0d330678 (cdmlib): ref #7644 some further fine tuning on setting CONTINUED/end date in ...
Andreas Müller
09:53 AM Revision 9e82319e (cdmlib): ref #7644 implement "continued" in TimePeriod, still missing for most...
Andreas Müller
09:51 AM Revision 52f57468 (cdm-dataportal): smaller changes in dna part of tree view
Katja Luther
09:40 AM feature request #5882: option (as new default) to show full citation of accepted name below taxon...
I can not really see why this **follows** the last scrutiny ticket.
**This** ticket is about nomenclatural referen...
Andreas Müller
09:34 AM Revision 5e7f22d8 (cdmlib): ref #7666 adding NARROW NO-BREAK after doubtful marker - adapting test
Andreas Kohlbecker
09:16 AM Revision b7f100e5 (cdmlib): ref #7666 adding NARROW NO-BREAK after doubtful marker
Andreas Kohlbecker

09/03/2018

10:41 PM Revision 8740b447 (cdmlib): next try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller
10:38 PM Revision f51e5bb0 (cdmlib): next try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller
09:51 PM Revision 2661d3b8 (cdmlib): try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller
09:51 PM Revision 9e0814ef (cdmlib): test trim in Excel import column recognition
Andreas Müller
09:14 PM Revision 539b7820 (cdmlib-apps): cleanup
Andreas Müller
09:09 PM Revision 9c82d689 (cdmlib): cleanup
Andreas Müller
07:56 PM Revision 2a6e6815 (cdmlib-apps): cleanup
Andreas Müller
07:54 PM Revision 0b9d6dad (cdmlib): cleanup
Andreas Müller
03:14 PM feature request #7412 (Resolved): Allow editing supplemental data for DescriptiveDataSets
Applied in changeset commit:taxeditor|0186b94d518629ffe1e2c7cb0c4ad0ee59605002. Patrick Plitzner
03:13 PM Revision 0186b94d (taxeditor): fix #7412 Allow editing supplemental data for DescriptiveDataSets
Patrick Plitzner
02:45 PM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement
Applied in changeset commit:taxeditor|472f773b8ac025f074ab28f5ef674533cda95717. Patrick Plitzner
11:53 AM feature request #7715 (Closed): Description sources should be handled same as DescriptionElement
Description sources are currently in supplemental data, DescriptionElement in Details view.
Both should be in Deta...
Andreas Müller
02:44 PM Revision 472f773b (taxeditor): fix #7715 Show sources for descriptions in DetailsView
Patrick Plitzner
02:28 PM bug #3992 (In Progress): Use last scrutiny instead of sec reference
Last scrutiny is now imported as sec references for those taxa having a last scrutiny information. Otherwise PTaxon.p... Andreas Müller
02:24 PM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
The former citations suggestions (deriving from the last scrutiny references, PTaxon.lastScrutinyFk) are now imported... Andreas Müller
01:33 PM Revision 29e233c6 (taxeditor): ref #7674 Add aggregated description directly to matrix after crea...
Patrick Plitzner
01:32 PM task #7553 (Closed): move TypeDesignationSetManagerIT to cdmlib
All tests on integration server where successful, so we can close this issue. Andreas Kohlbecker
12:12 PM task #7553 (Resolved): move TypeDesignationSetManagerIT to cdmlib
please review Katja Luther
12:11 PM Revision bcf6a056 (cdm-vaadin): ref #7553: delete TypeDesignationSetManagerIT from vaadin
Katja Luther
12:03 PM feature request #1847 (Rejected): Apply description sources (references) for a DescriptionBase to...
This is not primarily a taxeditor ticket therefore I close it but open a similar ticket for cdmlib services: #7716 Andreas Müller
12:01 PM bug #7716 (New): Apply description sources (references) for a DescriptionBase to all included des...
Currently webservices, exports, dataportal and aggregation algorithms do not include source of Description for Descri... Andreas Müller
11:46 AM Revision b527f05c (taxeditor): ref #7674 Show complete taxon hierarchy
Patrick Plitzner
11:45 AM Revision 18c8b6f9 (taxeditor): ref #7674 Change label and style for default description
Patrick Plitzner
11:43 AM Revision 9c0f743e (cdmlib): ref #7674 Change label of default description
Patrick Plitzner
11:00 AM feature request #674: Turn off all concept-related functionality in the Editor in Preferences
The idea is to simplify the UI for standard users Andreas Müller
10:48 AM Revision 1e444ccf (cdmlib): ref #7553: move TypeDesignationSetmanagerTest to cdmlib
Katja Luther
10:45 AM Revision 71571fbe (cdmlib-apps): ref #3992 adapt EuroMedActivator to last scrutiny changes
Andreas Müller
10:44 AM Revision 0d76bb7d (cdmlib-apps): add tests for occurrences sources with unwanted whitespaces
Andreas Müller
10:43 AM Revision d0c77267 (cdmlib-apps): ref #3992, ref #7713, ref #3990 add test for differing synonym r...
Andreas Müller
10:42 AM Revision d19ddd46 (cdmlib-apps): cleanup
Andreas Müller
10:42 AM Revision e1d0f581 (cdmlib-apps): ref #3992, ref #7713, ref #3990 Atomize last scrutiny references
Andreas Müller
10:24 AM Revision 57a2a42f (taxeditor): ref #7674 Adjust tree path according to default taxon description
Patrick Plitzner
10:23 AM Revision aac70fda (cdmlib): ref #7674 Add equals() and hashCode() to RowWrapperDTO
Patrick Plitzner
07:25 AM Revision fca09e81 (cdmlib): ref #7674 Fix initialization problems
Patrick Plitzner

09/01/2018

06:29 PM feature request #7714 (New): PhycoBank UI Restrictions for reference types
Do not allow registrations under Reference types "Journal", "Printseries"
1. there are nomenclatural acts in artic...
Wolf-Henning Kusber
09:17 AM task #7713: Atomize last scrutiny references
Find last scrutiny references not in use:
~~~
SELECT *
FROM Reference AS r
WHERE (RefId NOT IN
(SELECT L...
Andreas Müller
08:26 AM task #7713: Atomize last scrutiny references
~~~
SELECT RefId, Notes, RefYear, RefCategoryFk, RefCache, NomRefCache, PreliminaryFlag, InRefFk, Title, NomTitleAb...
Andreas Müller

08/31/2018

11:20 PM task #7713 (In Progress): Atomize last scrutiny references
Andreas Müller
11:17 PM task #7713 (In Progress): Atomize last scrutiny references
Last scrutiny references currently are all(?) flat and with protected cache. They should:
* ~~use inreferences (s...
Andreas Müller
06:46 PM Revision 5cfd066c (cdm-dataportal): ref #7658 test case for Nepenthes abalata
Andreas Kohlbecker
06:18 PM feature request #7712 (Closed): PhycoBank UI Reference detail size
Field "Reference detail" not long enough for standard entries,
e.g. 100, pl. 100, fig. 50-60 (see screen shot)
Prob...
Wolf-Henning Kusber
05:40 PM Revision 10e3087e (cdm-dataportal): ref #5753 adapting test to final decissions
Andreas Kohlbecker
05:16 PM Revision 41fb1151 (cdm-dataportal): more tests for misapplied names
Andreas Kohlbecker
04:34 PM Revision 0207cf2c (cdm-dataportal): updating selenium documentation by notes on compatible FF ver...
Andreas Kohlbecker
02:29 PM Revision 523a1fad (cdm-vaadin): removing debug code line
Andreas Kohlbecker
01:06 PM Revision ec8f5e38 (cdmlib): code cleanig
Andreas Kohlbecker
01:06 PM Revision 90f19d04 (cdmlib): code cleanig
Andreas Kohlbecker
12:03 PM Revision 1dc37073 (taxeditor): ref #7674 Create default taxon description when adding specimens
Patrick Plitzner
12:02 PM Revision 041e26e2 (cdmlib): ref #7674 Create default taxon description when adding specimens
Patrick Plitzner
11:08 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
Ok from this future perspective it makes sense to decouple the loading of the references and the display of the MANs.... Andreas Kohlbecker

08/30/2018

01:47 AM bug #7711 (New): Bugs in Media view
* when removing a Media from image gallery it is immediately saved but should be saved only after save command, inste... Andreas Müller
12:33 AM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of ...
I reverted using UUID as key in CdmEntityCacheKey because
* the eu.etaxonomy.cdm.cache.CdmTransientEntityCacher s...
Andreas Müller
03:13 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Kohlbecker wrote:
> I forgot one thing:
>
> I am a bit frightend about the change you made in the cacher ...
Andreas Müller
03:11 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
I discussed with Katja the handling of un-persisted objects. She also thinks that unpersisted objects should/are not ... Andreas Müller
02:20 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
I forgot one thing:
I am a bit frightend about the change you made in the cacher as this is touching an essential ...
Andreas Kohlbecker
02:17 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Müller wrote:
> Can you please check if this implementation solves your problems
My problem has been sol...
Andreas Kohlbecker
02:12 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Müller wrote:
> Is this on purpose assigned to me?
>
You are the default assignee for cdmlib, as this t...
Andreas Kohlbecker
02:10 PM bug #7709 (Feedback): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the...
Can you please check if this implementation solves your problems and if you generally agree with the implementation?
...
Andreas Müller
02:06 PM bug #7709 (Resolved): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the...
Applied in changeset commit:cdmlib|67ff6af5f4a24c899385e13c671c8071d301f3e7. Andreas Müller
01:39 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
With commit c5eb9820 I introduced more generics to the cacher (not yet 100% finished). Maybe we need to adapt externa... Andreas Müller
01:33 PM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of ...
Is this on purpose assigned to me?
If yes, please give more info what is meant by PersonField. PersonField is not ...
Andreas Müller
12:15 PM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of ...

the following code would fail:
~~~java
newP1 = Person.NewInstance();
newP2 = Person.NewInstance();
pf1 = ...
Andreas Kohlbecker
12:13 AM Revision 02d5f1f1 (taxeditor): cleanup and better use of generics
Andreas Müller
11:52 PM Revision b0538039 (cdmlib): javadoc, cleanup and rename permanentCacher
Andreas Müller
11:49 PM Revision 3c50e62a (cdmlib): javadoc, cleanup and rename permanentCacher
Andreas Müller
11:48 PM Revision 59259b05 (cdm-vaadin): rename permanentCacher setter
Andreas Müller
11:34 PM Revision 2c8b687b (taxeditor): cleanup
Andreas Müller
11:22 PM Revision df75b75c (cdmlib): ref #7709 remove NPE
Andreas Müller
11:12 PM Revision 7b74ba3d (taxeditor): ref #7709 use id instead of uuid for CdmEntityCacheKey in Conversa...
Andreas Müller
11:03 PM Revision 7ad7b0fa (cdmlib): ref #7709 cleanup CdmTransientEntityCacher
Andreas Müller
10:45 PM Revision 57e761cd (cdmlib): ref #7709 revert using uuid in CdmEntityCacheKey as key part
Andreas Müller
10:39 PM Revision 481d494a (cdmlib): cleanup
Andreas Müller
10:39 PM Revision 3c5c2395 (cdmlib): ref #7709 revert using uuid in CdmEntityCacheKey as
Andreas Müller
10:38 PM Revision 7b2e142b (taxeditor): ref #7709 use CdmBase constructor instead of class and id
Andreas Müller
10:38 PM Revision ed3f3e9a (taxeditor): cleanup
Andreas Müller
06:34 PM bug #7641 (Closed): Reference editor: Error when incerting several new authors into a new author ...
Test 1: #3, #6, 3.screenshot: fehlerhaftes Team komplett gelöscht und neu angelegt mit 2 Autoren aus der Liste und 2 ... Wolf-Henning Kusber
12:22 PM bug #7641: Reference editor: Error when incerting several new authors into a new author team
Problem solved, please test. Andreas Kohlbecker
12:20 PM bug #7641 (Resolved): Reference editor: Error when incerting several new authors into a new autho...
Applied in changeset commit:cdm-vaadin|fe3180d3be765b382f150b613f9936c711af9823. Andreas Kohlbecker
06:11 PM feature request #7666 (In Progress): Remaining issues for "Formatter and DTO for taxon relationsh...
Andreas Kohlbecker wrote:
> A disadvantage of the current implememtation of the taxon relationships webservice and D...
Andreas Müller
05:08 PM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
A disadvantage of the current implememtation of the taxon relationships webservice and DTO when being used in the dat... Andreas Kohlbecker
02:39 PM task #7553: move TypeDesignationSetManagerIT to cdmlib
Hallo Katja, könnntest du dieses ticket übernehmen?
Andreas
Andreas Kohlbecker
02:18 PM Revision b1b42293 (cdmlib): ref #7709 javadoc
Andreas Müller
01:47 PM Revision 67ff6af5 (cdmlib): fix #7709 use uuid instead of id for CdmEntityCacheKey
Andreas Müller
01:37 PM Revision 6dc22ea5 (cdmlib): minor
Andreas Müller
01:37 PM Revision c5eb9820 (cdmlib): ref #7709 use more generics for CdmCacher (not completed yet)
Andreas Müller
01:30 PM bug #7710 (New): Server info is missing in case of RemoteAccessException
The method `MessagingUtils.getContextInfo()` generates the info.
It seems like `CdmStore.getActiveCdmSource()` ret...
Patrick Plitzner
01:25 PM Revision e0812cf2 (taxeditor): ref #7674 Enhance sorting of matrix rows
- aggregated taxon description always on top
- specimen descriptions based on id
Patrick Plitzner
12:39 PM Revision 9f10abf7 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
12:36 PM Revision 25f9ee23 (cdmlib): Merge branch 'develop' into taxonDecription
Patrick Plitzner
12:21 PM Revision fa285af0 (cdm-vaadin): logging
Andreas Kohlbecker
12:20 PM Revision fe3180d3 (cdm-vaadin): fix #7641 ignoring unpersisted entities in ToOneRelatedEntityRelo...
Andreas Kohlbecker
11:45 AM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
All the UI issues have been solved.
The issue with the DerivedUnit with no FieldUnit is handled in #7704
Patrick Plitzner
11:24 AM feature request #5972: Prevent user from unwanted author and reference updates
> we might also handle this via rights&roles but probably this is not adequate. Generally we allow those users to upd... Andreas Kohlbecker
11:15 AM feature request #7708 (New): Unify handling of i18n title/representation in identifiable entities
Copied from #7707:
Also there are IdentifiableEntity someclasses which have similar but not equal data structures ...
Andreas Müller
11:13 AM Revision 269e42e0 (cdm-dataportal): ref #7686 Better way to check for empty string
Patrick Plitzner
11:13 AM feature request #7707 (New): Handle title / titleCache similar to Media in Classification and oth...
In #7705 the best way to handle i18n-title and titleCache in the UI for classes with "simple titleCache" (titleCache ... Andreas Müller
10:58 AM task #6864 (Duplicate): [DISCUSS] Title and titleCache in Media
This is mostly a duplicate for #7705 Andreas Müller
10:48 AM feature request #7706 (Closed): Warning for reused Media is missing
If Media is linked from multiple data the according warning is missing in the details view. This is critical.
===
...
Andreas Müller
10:45 AM feature request #7705: Improve handling of title/titleCache and multi-language support for Media
Katja, Patrick: do you think we can move this ticket to one of the current target versions (5.3 or 5.4)? Andreas Müller
10:30 AM feature request #7705 (New): Improve handling of title/titleCache and multi-language support for ...
We need i18n support for Media title and description if i18n support is switched on in preferences.
Also we to edi...
Andreas Müller
10:24 AM Revision b511fb13 (cdm-dataportal): ref #7686 Better way to check for empty string
Patrick Plitzner
09:46 AM feature request #7704: Dataportal specimen table should be able to show DerivedUnits without a Fi...
Patrick Plitzner wrote:
> This case can happen for type specimens that were created without a FieldUnit and just ass...
Andreas Müller
08:04 AM feature request #7704 (New): Dataportal specimen table should be able to show DerivedUnits withou...
The current implementation of the specimen table works only on FieldUnits. Each row represents a FieldUnit and if ext... Patrick Plitzner
07:57 AM bug #7703 (New): Multiple names cannot be shown in TypeDesignationDetailElement for specimens
If a SpecimenTypeDesignation has more than one name set as `typifiedName` the DetailsView shows the following:
![]...
Patrick Plitzner
07:49 AM Revision 6a660dc3 (cdm-dataportal): ref #7686 Remove citation label
Patrick Plitzner
07:20 AM Revision 0dd9be37 (cdm-dataportal): ref #7686 Fix check for empty string
Patrick Plitzner
06:53 AM Revision 76c5c9b7 (cdm-dataportal): ref #7686 Fix check for empty string
Patrick Plitzner

08/29/2018

06:50 PM bug #7702 (Resolved): corrupted hibernate session after previous error during save operation
Applied in changeset commit:cdm-vaadin|7450d44bf31c73a41b69d836d1b87f0305784ad7. Andreas Kohlbecker
06:11 PM bug #7702 (Closed): corrupted hibernate session after previous error during save operation
This is the same problem as in #7559
the bug has not 100% been fixed be the changes made last time.
After this ...
Andreas Kohlbecker
06:50 PM Revision 7450d44b (cdm-vaadin): fix #7702 always clearing session in finally clause
Andreas Kohlbecker
06:31 PM Revision 0f1cc6a3 (cdmlib): ref #7702 avoiding NPE in TargetEntityStates when pervious state is null
Andreas Kohlbecker
05:12 PM Revision 64688697 (cdmlib): ref #7686 Do not use null for keys in map (JSON error)
Patrick Plitzner
04:54 PM bug #7667 (Feedback): NoHttpResponseException for large queries in bulk editor
I could not reproduce this anymore.
I tested on production and test server.
Patrick Plitzner
04:47 PM Revision a5b11885 (cdm-dataportal): ref #7686 show info for unset type status
Patrick Plitzner
04:34 PM Revision cd175378 (cdmlib): ref #7686 Do not ignore types without type status
Patrick Plitzner
04:33 PM Revision 01371d61 (cdmlib): ref #7686 Use titleCache if no identifier can be found
Patrick Plitzner
04:28 PM bug #7528 (Closed): Allow changing the Registration status in the RegistrationWorkingsetEditor
For curators all status are available but the selection of the available status is limited to guarantee a directed an... Andreas Kohlbecker
04:09 PM Revision 4ad74423 (taxeditor): Use title cache as label when protected
Patrick Plitzner
04:08 PM Revision 2d6348e5 (cdm-dataportal): ref #7686 Add label to link to specimen page
Patrick Plitzner
03:24 PM Revision b317a252 (cdm-vaadin): fixing LIE related to RegistrationPopupEditor
Andreas Kohlbecker
03:20 PM feature request #7701 (New): Add link to typified name on specimen page of data portal
"Anmerkung: Auf der Specimen Seite fehlt noch ein Link auf den typifizierten Namen, entsprechend den associated taxa." Patrick Plitzner
03:19 PM bug #7686: Specimen title cache issues in data portal specimen table
Andreas M.:
* Gibt der verwendete Webservice grundsätzlich nur Fieldunits oder werden auch DerivedUnits zurückgege...
Patrick Plitzner
03:16 PM bug #7686: Specimen title cache issues in data portal specimen table
Walter:
"Hierzu dann gleich auch noch zwei Anmerkungen:

Den Titel mit der ID ist unschön, zumal ja diese I...
Patrick Plitzner
02:14 PM bug #7699: NPE when searching for specimen in bulk editor
Andreas Müller wrote:
> On rem_conf_am (see stacktrace) and search for "A*"
I cannot reproduce this here either
Patrick Plitzner
01:32 PM bug #7699: NPE when searching for specimen in bulk editor
On rem_conf_am (see stacktrace) and search for "A*" Andreas Müller
01:25 PM bug #7699 (Feedback): NPE when searching for specimen in bulk editor
I cannot reproduce this. On which DB did you test? Does it always happen for any search on any DB? Patrick Plitzner
11:59 AM bug #7699 (Feedback): NPE when searching for specimen in bulk editor
NPE when searching for specimen
~~~
login :
editor version : 5.3.0.201808280657
server : ()
schema version :...
Katja Luther
01:51 PM bug #7500: Can't open both related accepted taxa of reused MAN
Should I already review this ticket? Andreas Müller
01:24 PM bug #7698 (Resolved): CCE when creating new datasource
Applied in changeset commit:taxeditor|954982ef90bc8d6a36def59139fe9e96a2a7becc. Patrick Plitzner
11:06 AM bug #7698 (Closed): CCE when creating new datasource
~~~
login : admin
editor version : 5.3.0.201808280657
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
schem...
Andreas Müller
01:24 PM Revision 954982ef (taxeditor): fix #7698 Fix class cast exception
Patrick Plitzner
01:00 PM feature request #7700: use TypeDesignationSetManager for creating typedesignation string in cdmli...
see also #7695
the typedesignationSetManager already do the deduplication of specimen for one homotypical group an...
Katja Luther
01:00 PM feature request #7700 (Resolved): use TypeDesignationSetManager for creating typedesignation stri...
Katja Luther
12:23 PM bug #7371: Deleting Polytomous Key throws NPE
please review Katja Luther
12:23 PM bug #7371 (Resolved): Deleting Polytomous Key throws NPE
Applied in changeset commit:taxeditor|de55078200c8f2e52f4784ed9aa6b1c6611ddb86. Katja Luther
12:23 PM Revision de550782 (taxeditor): fix #7371: fix NPE when deleting polytomous key
Katja Luther
12:16 PM bug #4429 (Rejected): List of available software sites gets overwritten when updating product
Not relevant anymore as update sites are hardcoded now. Andreas Müller
09:21 AM feature request #7695 (In Progress): web service providing compact TypeDesignation representation...
I wonder if we should really require a single name uuid as obligatory input parameter. The semantics of the service s... Andreas Müller

08/28/2018

04:05 PM Revision 27bddb2a (cdm-dataportal): php doc
Andreas Kohlbecker
04:00 PM bug #7692 (Worksforme): Empty "Specimens" section
This is not a bug in the webservice. The Specimen in question actually has no FieldUnit.
So this is primarily a data...
Andreas Kohlbecker
03:48 PM bug #7692: Empty "Specimens" section
The actual problem is that the webservice `portal/taxon/fb987766-3ea5-45e0-a606-ca9b9d1253cf/associatedFieldUnits.jso... Andreas Kohlbecker
03:08 PM bug #7692 (In Progress): Empty "Specimens" section
The web service returns one specimen for this taxon:
http://api.cybertaxonomy.org/caryo_nepenthaceae/occurrence/by...
Andreas Kohlbecker
03:38 PM Revision 035aa43d (cdm-dataportal): Merge branch 'develop' into hotfix/5.2.1
Andreas Kohlbecker
03:33 PM Revision 02f3768c (cdm-dataportal): ref #7692 avoiding php warning related to specimen table
Andreas Kohlbecker
03:01 PM bug #7691 (Resolved): Empty "Bibliography" section
Applied in changeset commit:cdm-dataportal|850092a77002da04822cb23ce097e58b05ecbd5d. Andreas Kohlbecker
03:01 PM Revision 850092a7 (cdm-dataportal): fix #7691 supressing bibliography when content is empty
Andreas Kohlbecker
02:31 PM bug #7500 (Resolved): Can't open both related accepted taxa of reused MAN
Applied in changeset commit:taxeditor|c5cfeefde69828735b910d91075f0d7bdb42464f. Katja Luther
01:43 PM bug #7500 (In Progress): Can't open both related accepted taxa of reused MAN
Katja Luther
02:31 PM Revision c5cfeefd (taxeditor): fix #7500: for misapplied names related to different taxa use choo...
Katja Luther
01:52 PM bug #7693 (Duplicate): keys section can not be hidden in tabless taxon page
this is a duplicate of #7294 Andreas Kohlbecker
07:39 AM bug #7693 (Duplicate): keys section can not be hidden in tabless taxon page
When the tabless taxon page mode is enabled, the "Section/Tab visibility" setting for the "keys" section has no effect. Andreas Kohlbecker
01:48 PM bug #7294 (Resolved): keys block can not be disabled in tabless taxon page
Applied in changeset commit:cdm-dataportal|48a6d7e8e45c3140d00fc2b8ee5b66f472aa5a5a. Andreas Kohlbecker
01:47 PM Revision 8a1b451e (cdm-dataportal): php doc
Andreas Kohlbecker
01:47 PM Revision 48a6d7e8 (cdm-dataportal): fix #7294 fixing broken tab/page-section disabling
Andreas Kohlbecker
01:39 PM task #6778: remove big objects from taxeditor git repository
Andreas Kohlbecker wrote:
> Eine weitere Möglichkeit ist der Umzug auf Gitlab.com.
>
> "To celebrate today's good...
Patrick Plitzner
10:57 AM task #6778: remove big objects from taxeditor git repository
Eine weitere Möglichkeit ist der Umzug auf Gitlab.com.
"To celebrate today's good news we've permanently raised ou...
Andreas Kohlbecker
01:38 PM Revision 9da648a0 (taxeditor): ref #7680: fix NPE for excluded notes
Katja Luther
01:33 PM Revision e04a2b79 (taxeditor): ref #7680: unplaced, excluded and publish checkboxes should be ava...
Katja Luther
01:30 PM feature request #7680 (In Progress): Refactor TaxonNodeDetailElement
the problems of not visible unplaced, excluded and publish checkboxes are fixed now. But to implement the NewTaxonNod... Katja Luther
12:43 PM bug #6289 (Closed): “Back to images” link as “Back to taxon page” when in table-less mode
fixed and tested Andreas Kohlbecker
12:41 PM bug #6289 (Resolved): “Back to images” link as “Back to taxon page” when in table-less mode
Applied in changeset commit:cdm-dataportal|78bac306ef38b006fb5e622ce73f3ae699e6a10b. Andreas Kohlbecker
12:41 PM Revision ff5d6ecb (cdm-dataportal): typo
Andreas Kohlbecker
12:41 PM Revision 78bac306 (cdm-dataportal): fix #6289 'back to taxon page' link label for media page
Andreas Kohlbecker
12:28 PM bug #7563 (Closed): requests with %2F in URL are rejected by apache
Andreas Kohlbecker
12:28 PM bug #7563 (Resolved): requests with %2F in URL are rejected by apache
Andreas Kohlbecker
12:25 PM Revision 5044311f (taxeditor): Set the bgColor of summary row to gray
Patrick Plitzner
11:52 AM bug #7576 (Closed): Set Publish Flag for Subtree Dialog - Problems with Progressmonitor
Ok, the most severe problems seem to be fixed so far. Andreas Kohlbecker
11:47 AM task #7596 (Closed): PhycoBank Portal - Formatting
Andreas Kohlbecker
11:35 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
Problems with current implementation of the new webservice:
1. `relations.representation_L10n` and `relations.repr...
Andreas Kohlbecker
11:09 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
The TypeDesignationSetManager needs to be modified, so that it can be used for multiple usecases. By default it valid... Andreas Kohlbecker
10:28 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
changing the controller endpoint to `/name/{uuid}/homotypicGroupTypeDesignationsDTO`, issue description updated. Andreas Kohlbecker
09:10 AM feature request #7695 (In Progress): web service providing compact TypeDesignation representation...

The webservice path:
* ~~`typedesignations/byTaxon/{taxon_uuid}`, `typedesignations/byHomotypicalGroup/{group_...
Andreas Kohlbecker
10:51 AM bug #7679 (Closed): NPE when creating root child in classification
OK, seems to work now. Andreas Müller
08:52 AM bug #7679: NPE when creating root child in classification
Andreas Müller wrote:
> Looks like commit 46f913aa went only into the hotfix branch but needs to be committed to bot...
Patrick Plitzner
10:45 AM Revision 0f793f18 (cdmlib): ref #7695 initial implementation of the /name/{uuid}/homotypicGroupTy...
Andreas Kohlbecker
10:43 AM Revision e8daeef6 (taxeditor): minor
Andreas Müller
10:42 AM Revision df5966b8 (cdmlib): initial implementation of the /name/{uuid}/homotypicGroupTypeDesignat...
Andreas Kohlbecker
10:26 AM bug #7677 (Resolved): Nomenclatural Status is always set to nom illeg in details view
Katja Luther
10:25 AM Revision 5e188bc9 (cdmlib): ref #7694: adapt typedesignation output for cdmlight export
Katja Luther
09:20 AM feature request #7696 (New): use compact type representations in the synonymy as provided by the ...

* Source references should be shown as footnotes to the types
Note: see `compose_registation_dto($registration...
Andreas Kohlbecker
09:10 AM feature request #7694 (Duplicate): cdmlight export output of types needs to be adapted

Relativ einfach sollte das (zumindest bei Nepenthes) für die nicht-atomisierten Typenzitate sein; da steht das Ori...
Katja Luther
08:51 AM Revision ff687253 (taxeditor): ref #7679 Evaluate DB prefs for publish flag
Patrick Plitzner

08/27/2018

10:25 PM Revision 65b0eef9 (taxeditor): ref #7677: set default type for nomenclatural status while creatin...
Katja Luther
10:24 PM bug #7677: Nomenclatural Status is always set to nom illeg in details view
yes you are right, it is better to create a new status with default type nom. illeg. then we do not have to set the s... Katja Luther
08:30 PM bug #7677 (Feedback): Nomenclatural Status is always set to nom illeg in details view
The implementation is still not fully correct. If a NomenclaturalStatus WITHOUT type exists the type will be set to n... Andreas Müller
07:38 PM bug #7681 (Closed): Update date field when editing parse field in TimePeriodElement
Looks fine now.
Only, I would prefer to add some color to the parse field and/or the parse label. But this is not...
Andreas Müller
07:33 PM bug #7679 (Feedback): NPE when creating root child in classification
Looks like commit 46f913aa went only into the hotfix branch but needs to be committed to both branches.
Can't test...
Andreas Müller
03:25 PM bug #7679 (Resolved): NPE when creating root child in classification
Patrick Plitzner
03:00 PM bug #7679 (Feedback): NPE when creating root child in classification
The setting of the publish flag does not yet work in this case. It should either be "true" (but currently is "false")... Andreas Müller
01:49 PM bug #7679 (Resolved): NPE when creating root child in classification
Andreas Müller wrote:
> Can't we put this to resolved already?
As we already moved it to 5.2 because of the hotfi...
Patrick Plitzner
01:30 PM bug #7679: NPE when creating root child in classification
Can't we put this to resolved already? Andreas Müller
06:08 PM bug #7689: Mutliple representation exception when creating taxon nodes
We should try to fix this soon if it is reproducable Andreas Müller
03:46 PM bug #7689 (New): Mutliple representation exception when creating taxon nodes
Steps to reproduce:
1. Create a root taxon via right-click on classification
2. Directly create a second one on t...
Patrick Plitzner
05:25 PM bug #7555 (Closed): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsa...
Andreas Müller wrote:
> The issue described in the description (as link) seems to be solved.
>
> The 2 later link...
Andreas Kohlbecker
05:11 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
Andreas Müller wrote:
> Maybe it is related that for Nepenthes alata no specimen appear: http://caryophyllales.org/n...
Andreas Kohlbecker
05:08 PM bug #7692 (Worksforme): Empty "Specimens" section
In some cases the tabless taxon page shows an empty "Specimens" section.
Example: http://caryophyllales.org/nepent...
Andreas Kohlbecker
05:07 PM bug #7691 (Closed): Empty "Bibliography" section
In some cases the tabless taxon page shows an empty "Bibliography" section.
Example: http://caryophyllales.org/nep...
Andreas Kohlbecker
04:50 PM Revision e8d37b23 (taxeditor): ref #7674 Change bgColor of aggregated taxon description
Patrick Plitzner
04:11 PM bug #7690 (New): adapt avaiable typedesignation editors to name rank
The RegistrationWorkingsetEditor offers a selection dialog for NameTypeDesignationEditor and SpecimenTypeDesignationE... Andreas Kohlbecker
03:25 PM Revision 46f913aa (taxeditor): ref #7679 Evaluate DB prefs for publish flag
Patrick Plitzner
02:17 PM feature request #7688 (New): Agent (person/team/instituion) page
To make agents (persons, teams, institutions) linkable and give an overview on all data available on an agent we need... Andreas Müller
02:03 PM bug #7687 (Closed): NPE in TypeDesignationSetManager
Fix looks ok! Andreas Kohlbecker
01:57 PM bug #7687: NPE in TypeDesignationSetManager
Hallo,

habe ich vorläufig gefixt: commit:73e4daa. Wird heute Nacht eingespielt.

Andreas K., schaust du nochma...
Andreas Kohlbecker
01:55 PM bug #7687 (Closed): NPE in TypeDesignationSetManager


Arbeit mit Vaadin http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/8295ec6c...
Andreas Kohlbecker
01:49 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allo...
Andreas Kohlbecker wrote:
>...
> Maybe the http://docs.geotools.org/ provide a suitable parser? Also a possibility,...
Andreas Müller
01:36 PM report #7089: Rights and Roles Workshop 2017-11
I think it is better to close this ticket and open a new "Open issues for Rights and Roles" ticket. Andreas Müller
01:31 PM report #7089 (In Progress): Rights and Roles Workshop 2017-11
It is linked from [[WorkshopRightsAndRoles2017-11]], therefore I think we could close it without losing anything, BUT... Andreas Kohlbecker
12:33 PM report #7089: Rights and Roles Workshop 2017-11
Do we want to keep this ticket open? Andreas Müller
01:31 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
![](picture727-1.png)
Walter:
* Der Name nach Holotype of wird doppelt ausgegeben.
* Vor dem Link zum Herbarb...
Patrick Plitzner
01:28 PM feature request #7685 (New): Add Selenium tests for specimen table in data portal
* add test data to 160.45.63.201/cdm_integration_reference
* create new dump which needs to be stored in edit-integr...
Patrick Plitzner
01:22 PM bug #7528 (In Progress): Allow changing the Registration status in the RegistrationWorkingsetEditor
This issue should not be closed as duplicate as it contains the references to the code changes.
I will rather clo...
Andreas Kohlbecker
01:20 PM feature request #7618 (Duplicate): PhycoBank Curator rights
closing this issue as duplicate of #7528 the discussion on the status `rejected` has moved to #7684 Andreas Kohlbecker
01:01 PM bug #7676 (Feedback): Suchfunktionalität in Registration UI Dateneingabe
In der Ticketbeschreibung sind verschiedene Probleme beschrieben.
1. Suche nach der Registrierung (100267) für den...
Andreas Kohlbecker
12:37 PM bug #6247 (Rejected): Check if concept relationships are correctly implemented in Gefäßpflanzenim...
As the redlists are not using the platform anymore we do not need the import anymore. Andreas Müller
12:09 PM bug #7683 (In Progress): external links Audit table should allow uuid to be null
Andreas Müller
12:09 PM bug #7683: external links Audit table should allow uuid to be null
This is generally the case already when databases are created via hibernate CREATE (see e.g. edit-test.cdm_test_eurom... Andreas Müller
11:32 AM bug #7683 (In Progress): external links Audit table should allow uuid to be null
when deleting an external link an com.mysql.jdbc.exceptions.jdbc4.MySQLIntegrityConstraintViolationException: Column ... Katja Luther
11:56 AM Revision 036b1573 (taxeditor): move the parse field at the top of datedetails and add tooltip
Katja Luther
11:49 AM bug #7682 (In Progress): Point.precision must not be 0 by default
Already removed default value in class, still need update script to remove all 0 values from existing data Andreas Müller
09:48 AM bug #7682 (In Progress): Point.precision must not be 0 by default
It seems as if there is a problem with the embedded type Point. Whenever long and lat are set the radius is always se... Andreas Kohlbecker
11:46 AM Revision e6a65453 (cdmlib): ref# 7682 remove default value for Point.precision
Andreas Müller
11:32 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
the fields are available now, but the AUD table definition needs to be updated, the uuid should be allowed to be null... Katja Luther
10:46 AM Revision 9ad45667 (taxeditor): ref #7415: add external link section to original source part
Katja Luther
10:37 AM Revision 414b03e6 (taxeditor): ref #7415: add external link section to original source part
Katja Luther
09:36 AM Revision 8be7bd71 (taxeditor): ref #7674 Remove unused class
Patrick Plitzner
09:35 AM Revision 1cc08dc4 (taxeditor): ref #7674 Disable cell editor for aggregated taxon descriptions
Patrick Plitzner
09:12 AM Revision d4aefb3a (taxeditor): ref #7674 Do not aggregate taxon descriptions
Patrick Plitzner
09:09 AM Revision 61473b5a (taxeditor): ref #7674 Show taxon descriptions as rows in matrix
Patrick Plitzner
 

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