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From 09/18/2019 to 10/17/2019

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12:24 PM Revision 67ce7111 (cdm-dataportal): ref #8595 Show associated specimen on description detail page
- drupal formatting code Patrick Plitzner
12:17 PM task #8599 (New): TypeDesignation details pane: clarify function of the remove buttons
The TypeDesignation details pane offers two identical buttons with the trashcan icon, both show "Remove" when hoverin... Andreas Kohlbecker
12:17 PM Revision 0e2ba0e1 (cdmlib): adapt defaultApplicationContext to moved longRunningService
Katja Luther
12:09 PM Revision ca82cffd (cdmlib): move longrunningService to service
Katja Luther
11:52 AM Revision 9d88232c (cdm-dataportal): ref #8595 Fix taxon page TOC
Patrick Plitzner
11:41 AM bug #8591: Multiple representations problem on setting synonym as basionym
If you save before drag it as homotypic synonym, it works.
The person which causes the multiple representation excep...
Katja Luther
11:31 AM Revision 4a3669c6 (cdm-dataportal): ref #8596 Only show TOC entry when data available
Patrick Plitzner
11:20 AM task #8598 (New): Prevent from adding type designations to names with informal ranks
Adding typedesignations to names with informal ranks (species groups and aggregates) should be supressed, whereas re... Andreas Kohlbecker
10:04 AM Revision 5d7a1103 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
10:04 AM Revision 99e61c10 (cdmlib): fix app-import cache updater
Katja Luther

10/16/2019

05:45 PM Revision af9984b8 (cdmlib): ref #8595 Add sources to description init strategy
Patrick Plitzner
05:38 PM Revision 8b384421 (cdm-dataportal): ref #8595 Show clickable sources on description detail page
Patrick Plitzner
04:25 PM bug #8597: Name and taxon details: UI counter intuitive regarding cache states
Ahh, now I understand the problem, it is the TaxonName.titleCache which is still protected.
I completely overlooke...
Andreas Kohlbecker
03:08 PM bug #8597 (New): Name and taxon details: UI counter intuitive regarding cache states
It turned out that the originally reported problem was not a technical one but rather caused by the users sightlessne... Andreas Kohlbecker
03:02 PM Revision e170a53e (cdm-dataportal): ref #8595, #8596 Show list of aggr. descriptions on taxon pag...
Patrick Plitzner
02:59 PM feature request #8596 (New): Add a list of descriptions to the taxon page
On the general taxon page the descriptions belonging to this taxon should be listed.
They should be separated by t...
Patrick Plitzner
02:58 PM feature request #8595 (New): Create description detail page
Create a description detail page like it already exists for e.g. specimens.
Patrick Plitzner
09:18 AM bug #8594 (Closed): registration search results page showing: cdm_compose_url(): missing pathPara...
Andreas Kohlbecker
09:06 AM bug #8594 (Resolved): registration search results page showing: cdm_compose_url(): missing pathPa...
Applied in changeset commit:cdm-dataportal|5213125b3da787f8576f6430dd76ebc87d25a0f2. Andreas Kohlbecker
08:37 AM bug #8594 (Closed): registration search results page showing: cdm_compose_url(): missing pathPara...
A drupal error is displayed on pages where registration dtos are shown:
~~~
cdm_compose_url(): missing pathParame...
Andreas Kohlbecker
09:06 AM Revision 5213125b (cdm-dataportal): fix #8594 support for Registration, occurrences, events in cd...
Andreas Kohlbecker
08:48 AM Revision ec49a23d (cdmlib): ref #8450 Add service method to find default description
Patrick Plitzner

10/15/2019

05:23 PM bug #8593 (New): Name editor: wrong context menu for synonyms
frequently the wrong context menu is shown for synonyms. It looks like the right click is interpreted as right click ... Andreas Kohlbecker
04:24 PM bug #8592 (New): consider renaming menu entry General->Switch User

*Switch User* actually de-connects from the current database and re-displays the connect dialog.
The label *Swi...
Andreas Kohlbecker
03:26 PM bug #8591 (New): Multiple representations problem on setting synonym as basionym
* Database: http://ws1.cybertaxonomy.org/caryophyllales_demo_01]
* EDIT Taxonomic Editor, Version: 5.10.0, Build Dat...
Andreas Kohlbecker
12:44 PM bug #8590 (New): Details view does not show data of new synonym
To reproduce:
* Create new Taxon: Lymanbensonia incachacana (Cárdenas) Barthlott & N.Korotkova in Wildenowia 40(2)...
Andreas Kohlbecker
12:09 PM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
The problem persists, even if a commit exists for this issue. Andreas Kohlbecker
11:58 AM feature request #8589 (New): Allow undo of typing actions in the textfields
This is a request from the EDIT workshop 2013.
typing actions in the textfields as long as the text field is focus...
Andreas Kohlbecker

10/14/2019

03:44 PM bug #8588 (New): function of TaxonNode context menu 'Copy' is unclear
The Copy menu item is places directly after *Delete*. *Delete* removes the taxon node instance but *Copy* does not co... Andreas Kohlbecker
03:30 PM Revision 9cfe15fd (taxeditor): ref #8450 Fix config labels for default matrix values
Patrick Plitzner
11:23 AM Revision 6ca34ebe (taxeditor): ref #8450 Fix imports
Patrick Plitzner
11:07 AM Revision 6bf3f55e (cdmlib): ref #8450 Store default description wrapper in specimen wrapper
pplitzner
11:06 AM Revision 647d3230 (cdmlib): ref #7957 Add (web) service for filtering descriptions by type
Patrick Plitzner
10:53 AM Revision c85838fb (taxeditor): ref #8450 Set config labels according to default values
pplitzner

10/12/2019

12:58 AM Revision d9ece393 (cdmlib-apps): ref #8587 handle null rank names in PESI export a bit better
Andreas Müller
12:56 AM Revision 1363732b (cdmlib-apps): minor
Andreas Müller
12:55 AM Revision 02bf7c25 (cdmlib-apps): ref #2826 fix IF subspecies import, link to genus if species not...
Andreas Müller
12:53 AM Revision b313991f (cdmlib-apps): adapt some classes to new CommonService.getSourcedObjectSByIdInS...
Andreas Müller
12:51 AM Revision 812d0045 (cdmlib): remove old CommonService.getSourcedObjectSByIdInSource
Andreas Müller
11:51 PM Revision e0935f63 (cdmlib-apps): adapt some classes to new CommonService.getSourcedObjectSByIdInS...
Andreas Müller
11:49 PM Revision 3bc8dd61 (cdmlib): add additional method for more specific return type of CommonService....
Andreas Müller
11:04 PM Revision 2d09ccf7 (cdmlib): add more specific return type to CommonService.getSourcedObjectByIdIn...
Andreas Müller
11:02 PM Revision 925afb79 (cdmlib-apps): cleanup
Andreas Müller
05:26 PM Revision a3842bd8 (cdmlib): cleanup
Andreas Müller
12:07 PM Revision 891031f6 (cdmlib): ref #8509, ref #8508 some fixes to E+M PESI export and validation
Andreas Müller
12:06 PM Revision d9f92b40 (cdmlib-apps): ref #8509, ref #8508 some fixes to E+M PESI export and validation
Andreas Müller
12:05 PM Revision 1f9eb0e0 (cdmlib-apps): ref #8509 fix trailing whitespace for reference titleCaches
Andreas Müller
12:01 PM Revision 506f2414 (cdmlib-apps): ref #8577 cleanup E+M PESI validation
Andreas Müller
11:59 AM Revision 8e00239d (cdmlib-apps): ref #8587 adapt IF exporter
Andreas Müller
11:57 AM feature request #8587 (New): [PESI][IF] Implement IF specific CDM export
Open issue:
* For Sordariomycetidae and all children the kingdom can not be defined. See comment in #2717 for reason
Andreas Müller
11:22 AM Revision ffd6058e (cdmlib-apps): ref #2826 cleanup IF import
Andreas Müller

10/11/2019

03:46 PM bug #8586: Feature checkbox lists in perferences can not be scrolled
This is probably mentioned in some "remaining preferences issues" ticket. At least it is known. Can you please check? Andreas Müller
12:15 PM bug #8586 (New): Feature checkbox lists in perferences can not be scrolled
It is not possible to scroll the list of checkbox items in the settings for Features.
Tested in KDE 5.16.5
* G...
Andreas Kohlbecker
03:44 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
I am sure there is a duplicate ticket for this already. Can you please check. Andreas Müller
11:39 AM feature request #8585 (New): Factual Data View: new DesctiptionElements shoud be selected immedia...
After creating a new factual data entry (DescriptionElement) in the Factual Data View the new entry should be activat... Andreas Kohlbecker
03:39 PM feature request #8128: Add indicator for feature facts and/or vocabularies which description type...
WGB:
bin mir nicht sicher, ob Gebietsbezeichnungen (geogr., ökol.) features sind, aber sie können sich durchaus a...
Andreas Müller
02:19 PM Revision 8543d48b (cdmlib-apps): cleanup
Andreas Müller
02:19 PM Revision b639d1f2 (cdmlib-apps): ref #8577 updates to the E+M PESI export validation
Andreas Müller
02:19 PM Revision a2a0c1de (cdmlib-apps): ref #2717 some fixes E+M Pesi export
Andreas Müller
02:19 PM Revision f53e8dce (cdmlib-apps): reef #2717 add notNull handling to description export
Andreas Müller
01:48 PM Revision 869b76f8 (cdmlib): ref #2717 improve SimpleFilterMapper to use allowed and not allowed v...
Andreas Müller
01:46 PM Revision 580e88c9 (cdmlib): ref #2717 fix notNull handling in ObjectMapper
Andreas Müller
01:45 PM Revision c0a697ab (cdmlib): ref #2717 improve ExportIgnore and NotYetImplemented and NullMapper
Andreas Müller
01:44 PM Revision da9caa6c (cdmlib): fix annotation mapper includedTypes handling
Andreas Müller
01:44 PM Revision 62262304 (cdmlib): cleanup
Andreas Müller
11:52 AM bug #8581 (Closed): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
I think we do not need a review, so I close this ticket. Katja Luther
11:39 AM bug #8581: Naming inconsitency: Taxon Navigator or Taxonomic Tree?
Applied in changeset commit:taxeditor|10dd6a16ad49bd78857ddd4bb86aa25d5a5cdf30. Katja Luther
11:26 AM bug #8581 (Resolved): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
This change of the name came with the migration to e4. The variable for the title string was name.view.0 (="Taxon Nav... Katja Luther
11:39 AM Revision 10dd6a16 (taxeditor): fix #8581: renaming taxon navigator
Katja Luther
10:11 AM bug #8584: Appended phrase should be shown on top level for misapplied names
Was there a ticket which decided to create a subsection? If yes, please relate it to this ticket. Andreas Müller
10:11 AM bug #8584 (New): Appended phrase should be shown on top level for misapplied names
Currently when editing misapplied name relationships in details view the details view has a subsection for taxon info... Andreas Müller
09:42 AM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
As far as I understand the problem, we need to implement the `furtherVotingDescisions(CdmAuthority CdmAuthority, Targ... Andreas Kohlbecker

10/10/2019

08:23 PM feature request #8583: Change Longitude Latitude to Latitude Longitude in Vaadin Geo location
![](picture231-1.png) Wolf-Henning Kusber
08:22 PM feature request #8583 (New): Change Longitude Latitude to Latitude Longitude in Vaadin Geo location
Type Specimen Editor:
Change Longitude/Latitude to Latitude/Longitude in Vaadin Geo location.
Reason: In publicat...
Wolf-Henning Kusber
05:49 PM bug #8582 (New): Taxon Navigator: Classification label not refreshed & new taxa not visible
1. The Classification label is not refreshed in the Taxon Navigator after changing it in the "Classification Wizzard... Andreas Kohlbecker
05:42 PM bug #5670: refresh of Taxon Navigator
I think this ticket needs more details.
Refresh of what? General refresh of all nodes and the classifications?
Andreas Kohlbecker
05:19 PM bug #8545: Name editor: Erroneous status in Status type cannot be made withdrawn
Reason: a valid name (Botany) has no status information, wheras nom. val. is explicitly a zoological status with diff... Wolf-Henning Kusber
05:12 PM bug #8581: Naming inconsitency: Taxon Navigator or Taxonomic Tree?
Can you check when (and why, in which context) it was changed. I can't remember that we decided to rename it.
To m...
Andreas Müller
04:28 PM bug #8581 (Closed): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
The View is named like "Taxonomic Tree" but the menu entry is Window->Show View->"Taxon Navigator"
In the manual "...
Andreas Kohlbecker
03:06 PM EDIT Platform Etablierung task #8580 (In Progress): Update documentation to latest revision of the Taxeditor
Andreas Kohlbecker
03:06 PM EDIT Platform Etablierung task #8580 (In Progress): Update documentation to latest revision of the Taxeditor

Documents to check:
* Manual-EDIT-Platform-01-INSTALL.docx **DONE**
* Manual-EDIT-Platform-02-DEMO.docx
* Manu...
Andreas Kohlbecker
02:58 PM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
Andreas Müller wrote:
> is this only an UI issue or is it also a cdmlib-security issue?
I think this is also a cd...
Katja Luther
12:01 PM Revision 972ff1cf (cdmlib): fix incorrect obligatory handling in DoiMapper and TimePeriodMapper
Andreas Müller
12:00 PM Revision faa0db48 (cdmlib): ref #2717 allow notNull for SingleAttribute mappers (needed for requi...
Andreas Müller
11:58 AM Revision 15cfae05 (cdmlib): ref #2717 fix incorrect error handling in CollectionExportMapping, on...
Andreas Müller
11:56 AM Revision 66925277 (cdmlib): fix incorrect defaultValue handling in BooleanMapper factory method
Andreas Müller
11:55 AM Revision 23720f5f (cdmlib): cleanup
Andreas Müller
10:57 AM Revision e0a12099 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-...
Katja Luther
10:56 AM Revision 3f87d726 (cdmlib-apps): fix compile errors in app-import
Katja Luther
10:11 AM Revision af221f0d (cdmlib-apps): commented 2 lines to make edaphobase compile
Andreas Müller
09:47 AM Revision dd919d85 (cdmlib-apps): reef #2717 better handling of status undefined
Andreas Müller
09:47 AM Revision 9d857396 (cdmlib-apps): ref #2717 add Valencian, High Aragonese, Majorcan and Faroer to ...
Andreas Müller
09:47 AM Revision 8d5e5e53 (cdmlib-apps): cleanup
Andreas Müller
09:47 AM Revision b9dcae47 (cdmlib-apps): cleanup
Andreas Müller
09:32 AM Revision bf7e9675 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-...
Katja Luther
09:31 AM Revision ff5db610 (cdmlib-apps): ref #1445: merging fauna europaea and erms
Katja Luther

10/09/2019

09:22 PM bug #8579: Search in PhycoBank Portal with error
Search for scientific name Planothidium: 34x error Wolf-Henning Kusber
07:18 PM bug #8579 (New): Search in PhycoBank Portal with error
Search for Publication "Wetzel". Search is working but errors are displayed.
![](picture035-1.png)
Wolf-Henning Kusber
09:05 PM Revision 855ea64a (cdmlib-apps): ref #1444, ref #8509 add defined vocabulary to ERMS areas
Andreas Müller
09:04 PM Revision 81bc4733 (cdmlib-apps): ref #2717 add EM common name area handling to PesiTransformer
Andreas Müller
09:01 PM Revision e2fb06b3 (cdmlib): cleanup
Andreas Müller
09:00 PM Revision 9801bfb4 (cdmlib): ref #2717 add EM common name area UUIDs to BerlinModelTransformer
Andreas Müller
05:04 PM EDIT Platform Etablierung task #8578 (New): Improve term 'window' in documentation
In the Taxeditor documentation the term 'window' is being used as simple and common term to refer to the various top ... Andreas Kohlbecker
02:49 PM Revision 4b6dc990 (taxeditor): Remove unused class variable
Patrick Plitzner
02:49 PM Revision e9958b2a (taxeditor): ref #8450 Expand matrix rows only to taxon level
Patrick Plitzner
01:08 PM Revision 0c308148 (cdmlib): cleanup
Andreas Müller
11:25 AM Revision 5afad693 (cdmlib-apps): # 2717 fix NPE in finding areas (still needs to be tested by ERM...
Andreas Müller
11:24 AM Revision 99414418 (cdmlib-apps): # 2717 better logging for E+M distribution status "undefined"
Andreas Müller
11:23 AM Revision 9fe94bfe (cdmlib-apps): # 2717 improve handling of name types which do not exist as taxa...
Andreas Müller
11:22 AM Revision ab4a17f5 (cdmlib-apps): # 2717 fix finding kingdom for valueless EM taxa
Andreas Müller
11:19 AM Revision b643bc02 (cdmlib-apps): ref #8577 some changes to E+M export validation
Andreas Müller
11:16 AM Revision 6f79628c (cdmlib-apps): # 2717 cleanup and better logging for PesiExport
Andreas Müller
11:05 AM Revision fb82651c (cdmlib): #8577 fix handling of long values in getUniqueInteger
Andreas Müller
11:05 AM Revision 5d0804d6 (cdmlib): cleanup
Andreas Müller
11:03 AM task #8577 (New): [PESI][E+M] Validation for E+M export
Implement validation for E+M export to PESI warehouse
Maybe duplicated by #2792
Andreas Müller
10:40 AM Revision 3f5bef06 (cdmlib): ref #1445: fix helper methods for pesi merging
Katja Luther

10/08/2019

11:30 PM Revision 01bc5fe1 (cdmlib-apps): ref #8508 some refactoring for ERMS validation
Andreas Müller
11:29 PM Revision 55da90fc (cdmlib-apps): ref #1444 trim displayname for ERMS import
Andreas Müller
11:28 PM Revision 2e058f2b (cdmlib-apps): # 2717 add PesiEuroMedValidator
Andreas Müller
11:28 PM Revision 67426b79 (cdmlib-apps): ref #2717 adapt PesiExport to EuroMed requirements and adapt Pes...
Andreas Müller
11:23 PM Revision 803707ee (cdmlib-apps): GreeceImageActivator latest import file
Andreas Müller
11:22 PM Revision 2f628c0c (cdmlib-apps): cleanup
Andreas Müller
10:54 PM Revision e5c18a95 (cdmlib): fix default schema validation for ImportConfiguratorBase
Andreas Müller
10:54 PM Revision e0f9407f (cdmlib): cleanup
Andreas Müller
10:54 PM Revision 73eeeb34 (cdmlib): ref #1444 add diffIndex method to CdmUtils
Andreas Müller
10:21 PM Revision d346bae9 (cdmlib-apps): ref #2717 script for adding E+M source to all E+M taxa
Andreas Müller
12:23 PM Revision 87820880 (cdmlib): smaller changes in CdmLightExport (syn sec and fullAuthor in references)
Katja Luther
10:22 AM task #8576 (New): Dokumentation for PESI export
This ticket documents how to run a complete PESI export. Later the content will be moved to a Wiki page.
* Ask fo...
Andreas Müller

10/07/2019

09:24 PM Revision 58cd368c (cdmlib-apps): ref #8509 use kingdomId to define rank for PESI export
Andreas Müller
09:23 PM Revision 22e0d6ae (cdmlib-apps): ref #8509 use EnumSet instead of BitSet for source definition
Andreas Müller
09:21 PM Revision 39d481af (cdmlib-apps): cleanup
Andreas Müller
08:48 PM Revision 787b3ec2 (cdmlib-apps): ref #8509 cleanup rank handling in PesiTranformer
Andreas Müller
08:46 PM Revision 0b1be0da (cdmlib-apps): ref #1444, ref #8508 move diffIndex method to CdmUtils
Andreas Müller
05:57 PM EDIT Platform Etablierung task #8555 (In Progress): Evaluate document format and management for the documentation
Andreas Kohlbecker

10/06/2019

01:55 AM Revision 65866505 (taxeditor): fix compile error
Andreas Müller
12:51 AM Revision b8fc4ee4 (cdmlib): ref #1444, ref #8509 adapt IncludedInMapper and TaxonRelationshipType...
Andreas Müller
12:49 AM Revision 57fc748f (cdmlib-apps): ref #8508 adapt ERMS pipeline validator to taxon relationships
Andreas Müller
12:49 AM Revision 54a3d685 (cdmlib-apps): cleanup
Andreas Müller
12:48 AM Revision 41cf69c5 (cdmlib-apps): ref #1444, ref #5809 fix taxon relationships in ERMS import and ...
Andreas Müller
12:43 AM Revision aa44c220 (cdmlib-apps): ref #1444 improve logging and case sensitive handling for synony...
Andreas Müller
12:42 AM Revision 75f6d666 (cdmlib-apps): ref #8509 add included taxon relationship export to PESI
Andreas Müller
12:39 AM Revision d87e224c (cdmlib-apps): ref #5809 change partition size for source export
Andreas Müller
03:03 PM Revision c1ff510c (taxeditor): cleanup
Andreas Müller
10:04 AM Revision 9afc9463 (cdmlib-apps): ref #8508 add TODO to validation
Andreas Müller
10:03 AM Revision 664255b8 (cdmlib-apps): ref #8508 add nomstatus, name rel and taxon rel validation
Andreas Müller
10:00 AM Revision 2b21e6b8 (cdmlib-apps): ref #8508 add Monera to ERMS validation again
Andreas Müller
09:58 AM Revision 7599c655 (cdmlib-apps): ref #1444 revert order of nomstatus to make it similar to SQL sc...
Andreas Müller
09:57 AM Revision 60d45927 (cdmlib-apps): cleanup
Andreas Müller
09:56 AM Revision 1bbfa4c0 (cdmlib-apps): ref #1444 fix included in and synonym relationship handling for ...
Andreas Müller
09:53 AM Revision a39ba704 (cdmlib-apps): ref #1444 implement ERMS getSynonymRelationTypesByKey
Andreas Müller
09:52 AM Revision 6dbf7ff0 (cdmlib-apps): ref #1444 make ERMS getNomenclaturalStatusByKey case insensitiv
Andreas Müller
09:48 AM Revision 397a8033 (cdmlib-apps): ref #1444, ref #8508, ref #8509 move synonymTaxonRelationshiptyp...
Andreas Müller
09:46 AM Revision b607fa1a (cdmlib-apps): ref #8509 handle doubtful NomenclaturalStatusType.COMB_NOV() to ...
Andreas Müller
09:44 AM Revision 7dcac868 (cdmlib-apps): ref #8509 add missing misapplied name and pro parte synonym rela...
Andreas Müller
09:42 AM Revision 0049964a (cdmlib-apps): cleanup
Andreas Müller
09:38 AM Revision 5ee6ca0b (cdmlib-apps): minor for Greece import
Andreas Müller
09:37 AM Revision 1a278727 (cdmlib): ref #1444 make getTaxonRelationshipType public in importers to make i...
Andreas Müller
09:37 AM Revision 63c18ef5 (cdmlib): ref #1444 handle no language as unknown language for imported new nom...
Andreas Müller
09:37 AM Revision 8588c491 (cdmlib): ref #1444, ref #8509 move ERMS synonym taxon relationship uuids to Ta...
Andreas Müller
09:37 AM Revision 0578d459 (cdmlib): ref #1444 adapt DbImportSynonymMapper to ERMS requirements
Andreas Müller
09:37 AM Revision 52c1c6a3 (cdmlib): ref #1444 add getSynonymRelationTypesByKey to IInputTransformer
Andreas Müller
09:37 AM Revision 95c828bc (cdmlib): ref #8509 fix NPE in getAnnotations(by type-uuid)
Andreas Müller
09:37 AM Revision f1319b4b (cdmlib): reduce log level for non latin nom status representations
Andreas Müller
09:36 AM Revision 74336004 (cdmlib): cleanup
Andreas Müller

10/04/2019

06:20 PM bug #8575 (New): Specimen details in PhycoBank Portal
Example: http://phycobank.org/102053
PhycoBank Portal output
There are two issues:
(1) The footnot should lead to ...
Wolf-Henning Kusber
06:10 PM task #8574 (New): Übernahme von Namen in PhycoBank
Wenn eine Gattung, um eine neue Art anzulegen oder ein Species Epitheton, um ein neues infraspezifisches Epitheton an... Wolf-Henning Kusber

10/02/2019

02:37 PM task #7976: [PESI][ERMS] Erms taxon import
NO synonyms exist with an accepted taxon again being a synonym of another accepted taxon:
~~~
SELECT acc.id ac...
Andreas Müller
09:12 AM task #7976: [PESI][ERMS] Erms taxon import
ACCEPTED TAXON:
336 taxa have NO accepted taxon (tu_acctaxon IS NULL)
57003 are there own accepted taxon (tu_ac...
Andreas Müller
08:34 AM task #7976: [PESI][ERMS] Erms taxon import
There are 82 tu_status=accepted taxa with unaccept reason: (mail sent)
~~~
SELECT *
FROM tu
WHERE tu_status = 1...
Andreas Müller
10:44 AM Revision d0a4f3d9 (taxeditor): ref #5873: performance issues
Katja Luther

10/01/2019

03:03 PM Revision d3796291 (cdmlib): ref #5873: check for general description editing right
Katja Luther
03:02 PM Revision d48b6aa4 (taxeditor): ref #5873: authentication as parameter for service method
Katja Luther
01:38 PM Revision a4ff8cb0 (cdmlib): revert some changes
Katja Luther
01:28 PM Revision e913a037 (cdmlib): ref #5873: filter nodes without permission
Katja Luther
01:20 PM Revision 1503d9ad (taxeditor): ref #5873: check rights for selected subtree for distribution editor
Katja Luther
10:14 AM Revision 9498b2f0 (taxeditor): Use parentDto() service method
Patrick Plitzner

09/30/2019

02:09 PM Revision 077e5556 (taxeditor): ref #8572: minor
Katja Luther
02:04 PM feature request #7457 (Resolved): E+M: Allow filtering for only published in search
Applied in changeset commit:taxeditor|d12fef53934e5bc7a8869160e63f6c2f1a14b52c. Katja Luther
02:04 PM Revision d12fef53 (taxeditor): fix #7457: add filter option for unpublished taxa in taxon search
Katja Luther
01:54 PM bug #8573: Übernahme sec. als syn. sec.
Can you please further define what the concrete problem is. This behavior always existed and is default. Usually syno... Andreas Müller
01:47 PM bug #8533: missing collector and fieldnumber in abcd import
I uploaded the correct tissue sample file and will test again. Patrick Plitzner
01:24 PM bug #8533 (Resolved): missing collector and fieldnumber in abcd import
as the used example was about two different field units I close this ticket. Please make a last review for closing th... Katja Luther
01:22 PM feature request #8572 (Resolved): Rule considered configurable
please review Katja Luther
01:21 PM feature request #8486 (Resolved): Indicating doubtful state in navigator and add set-doubtful to ...
now doubtful is "??", unplaced "?" Katja Luther
01:21 PM Revision 24802dc7 (taxeditor): ref #8486: add symbol to doubtful taxonnode in navigator
Katja Luther
11:52 AM Revision 39af4e55 (cdmlib-apps): ref #1444 remove ErmsGeneralImportValidator from import for now
Andreas Müller
11:49 AM Revision dd9fed99 (cdmlib-apps): ref #8508 latest version of import + export for ERMS activators
Andreas Müller
11:48 AM Revision 8a133607 (cdmlib-apps): ref #1444, ref #8508 add Monera filter handling in ERMS validati...
Andreas Müller
10:32 AM Revision 651cb4bc (cdmlib-apps): ref #1444 improve handling of infra-infra-species and include te...
Andreas Müller
10:29 AM Revision 33337032 (cdmlib-apps): ref #1444, ref #8509, ref #8508 handle NomenclaturalStatusType i...
Andreas Müller
10:20 AM Revision bb4404d2 (cdmlib-apps): cleanup
Andreas Müller
10:16 AM Revision 6e51084a (cdmlib): ref #1444 allow to create new NomenclaturalStatusTypes during import
Andreas Müller
10:15 AM Revision f0327d32 (cdmlib): cleanup
Andreas Müller
09:59 AM Revision c219c816 (taxeditor): fix NPE in NameDetailsView Preference processing
Katja Luther

09/29/2019

10:23 PM Revision 2cbe08de (cdmlib): cleanup
Andreas Müller
10:22 PM Revision 67ed9b99 (cdmlib): ref #1444 add resetTitleCache method
Andreas Müller
09:54 PM Revision d1dec4a7 (cdmlib): ref #1444 adapt DbImportMethodMapper for ERMS titleCache testing
Andreas Müller
09:52 PM Revision 2120777b (cdmlib): cleanup
Andreas Müller
08:33 PM Revision 118bc6b8 (cdmlib-apps): ref #8508 latest changes to PesiErmsValidator
Andreas Müller
08:33 PM Revision 93c92edc (cdmlib-apps): ref #8509 minor fix
Andreas Müller
08:32 PM Revision b91853a7 (cdmlib-apps): cleanup PesiTransformer
Andreas Müller
08:32 PM Revision 383b85b1 (cdmlib-apps): ref #8509 fix missing non-default language notes
Andreas Müller
08:30 PM Revision 9bb5ffae (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle truncated reference cache...
Andreas Müller
08:28 PM Revision a1340c69 (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle rank, kingdom and code co...
Andreas Müller
08:25 PM Revision 79276af0 (cdmlib-apps): cleanup
Andreas Müller
08:18 PM Revision effd09f0 (cdmlib): ref #8509 handle non-default language textdata correctly in DbTextDat...
Andreas Müller
08:17 PM Revision 492451b1 (cdmlib): ref #8509 handle truncated titlecaches in DbObjectMapper correctly
Andreas Müller
08:16 PM Revision f19a4363 (cdmlib): cleanup
Andreas Müller
04:26 PM Revision 2e170952 (taxeditor): preliminary comment sectionMap handling in PreferencesUtil
Andreas Müller

09/28/2019

12:33 AM Revision 2c11da48 (cdmlib-apps): ref #8508 latest changes for erms pipeline validation
Andreas Müller
12:33 AM Revision 7990caf9 (cdmlib-apps): ref #1444 trim notes import ERMS
Andreas Müller
12:32 AM Revision de3c38ba (cdmlib-apps): ref #8509 fix link (and ecology) export ERMS
Andreas Müller
12:30 AM Revision 80911706 (cdmlib): ref #8509 dependend IdIncMapper
Andreas Müller
12:29 AM Revision 11263195 (cdmlib): ref #1444 add trim to DbImportMultiLanguageTextMapper
Andreas Müller
12:29 AM Revision ae12a9be (cdmlib): cleanup
Andreas Müller
09:12 PM Revision 81dfc7e2 (cdmlib-apps): ref #8509 add CommonNameSource to doDelete for ERMS export
Andreas Müller
09:11 PM Revision 17655285 (cdmlib-apps): ref #8509 fix ERMS image export to support multiple media
Andreas Müller
09:10 PM Revision 95df0734 (cdmlib-apps): ref #1444 fix sql for link import ERMS
Andreas Müller
09:09 PM Revision 644b2537 (cdmlib-apps): cleanup
Andreas Müller
07:08 PM Revision 440b7828 (cdmlib-apps): ref #8508 latest changes to ERMS validator and activators
Andreas Müller
07:07 PM Revision ddc988ed (cdmlib-apps): ref #1444 fix note for synonyms handling for ERMS import
Andreas Müller
07:06 PM Revision c32ee6d2 (cdmlib-apps): ref #8509 adapt description source handling for ERMS export
Andreas Müller
07:05 PM Revision 73558a3c (cdmlib-apps): ref #1444 fix note source handling in ERMS
Andreas Müller
07:05 PM Revision 6ae21a57 (cdmlib-apps): ref #1444, ref #8508, ref #8509 fix link handling and add ecolo...
Andreas Müller
07:02 PM Revision 7b61057c (cdmlib-apps): ref #1444 fix reference type handling for ERMS
Andreas Müller
07:00 PM Revision 2ae4e7ca (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle taxon.cacheCitation in ERMS
Andreas Müller
06:58 PM Revision 23801854 (cdmlib-apps): cleanup
Andreas Müller
06:46 PM Revision 7e6fc953 (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle SpeciesExpertName in ERMS
Andreas Müller
06:41 PM Revision 5dc4b31d (cdmlib): ref #8509 some helper methods for ERMS export
Andreas Müller
06:40 PM Revision f02afae4 (cdmlib): ref #8509 new factory method for MethodMapper
Andreas Müller
06:40 PM Revision 88f75039 (cdmlib): ref #1444, ref #8509 add some import and export mappers
Andreas Müller
06:39 PM Revision aa30ebde (cdmlib): ref #1444, ref #8509 fix some import and export mappers
Andreas Müller
06:38 PM Revision e6f237b7 (cdmlib): cleanup
Andreas Müller

09/27/2019

09:49 PM bug #8565 (Closed): external links and dois no longer showing up
NK:
ja, das Link Symbol wird angezeigt und die Weiterleitung funktioniert.
Andreas Müller
08:42 PM bug #8573 (New): Übernahme sec. als syn. sec.
Wenn ich im Taxonomic EDITor ein akzeptiertes Taxon in die Synonymie verschiebe, wird (neuerdings?) die sec. ref. des... Wolf-Henning Kusber
05:46 PM Revision 09e2bb85 (cdmlib-apps): adapt classes to changes in DbAnnotationMapper with excluded set
Andreas Müller
05:45 PM Revision 788f4a81 (cdmlib-apps): ref #8509 rename old PESI factual data exports
Andreas Müller
05:43 PM Revision 344f4ac6 (cdmlib-apps): adapt classes to changes in DbAnnotationMapper with excluded set
Andreas Müller
05:39 PM Revision 299bbd45 (cdmlib): ref #1444 refactor DbAnnotationMapper and add included type filtering
Andreas Müller
05:39 PM Revision a98f6dad (cdmlib): ref #1444 use sourceReferenceTitle instead of database name where ava...
Andreas Müller
05:39 PM Revision bd9b07e3 (cdmlib): cleanup
Andreas Müller
02:58 PM feature request #8572 (In Progress): Rule considered configurable
Katja Luther
10:34 AM feature request #8572 (Resolved): Rule considered configurable
Rule considered is not needed in all projects, therefore it should be configurable whether it should be shown or not Katja Luther
01:29 PM Revision da5756d8 (taxeditor): ref #8572: code cleaning and rule considered configurable
Katja Luther
01:29 PM Revision 6e2d027c (taxeditor): code cleaning
Katja Luther
12:30 PM Revision bd0e8d04 (taxeditor): Fix for setting the cursor for key statements in detail view
Patrick Plitzner
12:21 PM Revision e52a98ef (taxeditor): Fix potential NPE
Patrick Plitzner
11:22 AM Revision a92dd19c (taxeditor): Fix class cast exception for poltomous key graph view
Patrick Plitzner
11:17 AM Revision a6871bd2 (cdmlib-apps): cleanup
Andreas Müller
10:34 AM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
this is implemented now. Configuration is moved to new ticket (#8572). Katja Luther
10:29 AM Revision cc1f8735 (taxeditor): ref #8410: disable code edition combo when rule considered is empty
Katja Luther
09:36 AM Revision 4e9c11d6 (cdmlib): ref #8450 Add sample size to quantitative data aggregate
Patrick Plitzner
09:36 AM Revision 192396cd (cdmlib): ref #8450 minor refactoring
Patrick Plitzner

09/26/2019

04:58 PM bug #8571: PolytomousKeyNode.otherNode not editable in TaxEditor
AM:
Mir ist gerade aufgefallen, dass hinzufügen von „Other Node“ noch nicht funktioniert. Für Cuba bräuchten wir d...
Andreas Müller
04:57 PM bug #8571 (New): PolytomousKeyNode.otherNode not editable in TaxEditor
Andreas Müller
04:19 PM Revision 7d377aab (taxeditor): ref #8410: add nomencl. code edition - continue
Katja Luther
04:16 PM bug #8570: PolytomousKeyNode.otherNode missing in REST service response
done! Andreas Kohlbecker
04:15 PM bug #8570 (Resolved): PolytomousKeyNode.otherNode missing in REST service response
Applied in changeset commit:cdmlib|0d7fac88d9f91c91f5233a858d4d0245e1e25af8. Andreas Kohlbecker
04:14 PM bug #8570 (Resolved): PolytomousKeyNode.otherNode missing in REST service response
http://api.cybertaxonomy.org/flora-cuba/polytomousKeyNode/11be28e1-00d6-4368-89d9-16782b7e5ac8.json
lacks the dat...
Andreas Kohlbecker
04:15 PM Revision 0d7fac88 (cdmlib): fix #8570 adding PolytomousKeyNode.otherNode to web service response
Andreas Kohlbecker
04:14 PM Revision ec00e362 (taxeditor): ref #8410: add nomencl. code edition
Katja Luther
04:12 PM Revision 9dd11918 (taxeditor): ref #8568: performance issues for term and voc preference pages
Katja Luther
03:08 PM Revision 7fc77454 (cdmlib): ref #8568: fix findByUuidsAsDto for terms
Katja Luther
03:04 PM Revision 365949cd (cdmlib-apps): ref #8508, ref #8509, ref #1444 implement ERMS ref types
Andreas Müller
01:36 PM Revision d8f3c114 (taxeditor): fix call of removed method getAllRelationships
Katja Luther
01:19 PM feature request #8569 (New): Supplemental data for PolytomousKeyNodes
... are currently not yet available. Click on a row in the tables only shows suppl data for key itself.
The proble...
Andreas Müller
01:07 PM Revision d5f0d955 (cdmlib): Cleanup PolytomousKeyNode and remove deprecated methods
Andreas Müller
01:03 PM Revision c295928b (taxeditor): ref #8568: performance issues for term and voc preference pages
Katja Luther
01:01 PM Revision 22bbda04 (cdmlib): ref #8568: methods to get term and voc dtos by uuid list
Katja Luther
12:59 PM feature request #8568 (New): improve performance for term and vocabulary preference pages
the performance for the term and vocabulary preference pages is really slow. We need better service methods to get th... Katja Luther
11:41 AM Revision 9355fbbb (cdmlib): ref #1444 fix ResultSetPartitioner for imports with >1 ID columns
Andreas Müller
11:41 AM Revision 4ad2dc40 (cdmlib): ref #8509 replace deprecated INameService.allRelationships for PESI ...
Andreas Müller
11:41 AM Revision f0a9c28e (cdmlib): ref #8509 Adapt DbAnnotationMapper to work for PESI RelTaxon export
Andreas Müller
11:41 AM Revision 5f4207f3 (cdmlib): cleanup
Andreas Müller
11:40 AM Revision fc3c0b4e (cdmlib-apps): adapt BerlinModelNameRelationExport to new NameService.listNameR...
Andreas Müller
11:39 AM Revision 2cb6ad67 (cdmlib-apps): ref #8508, ref #8509, ref #1444 latest changes to ERMS import an...
Andreas Müller
11:38 AM Revision f08f9f6d (cdmlib-apps): ref #8508, ref #8509, ref #1444 fix source use for ERMS
Andreas Müller
11:37 AM Revision 164fc327 (cdmlib-apps): ref #8508 latest changes to PesiErmsValidator
Andreas Müller
11:37 AM Revision 5a251c5c (cdmlib-apps): ref #8509 fix RelTaxon export for ERMS / PESI
Andreas Müller
11:35 AM Revision 03241a1f (cdmlib-apps): ref #8509 fix missing rank for Biota
Andreas Müller
11:33 AM Revision 03538949 (cdmlib-apps): cleanup
Andreas Müller
11:25 AM Revision d3530340 (cdmlib-apps): ref #8508, ref #8509, ref #1444 add additional taxon source hand...
Andreas Müller
09:48 AM Revision 9ba00ebb (cdmlib): ref #8450 Only clone specimen descriptions once
Patrick Plitzner

09/25/2019

08:59 PM feature request #8226: make modifiers for description elements configurable
why did you remove the target version? On purpose? Andreas Müller
02:06 PM feature request #8226: make modifiers for description elements configurable
please review Katja Luther
02:06 PM feature request #8226 (Resolved): make modifiers for description elements configurable
Applied in changeset commit:taxeditor|e056e66eb1fd2b32b4f2fa71bed1ce0496c6af22. Katja Luther
04:52 PM bug #8567 (New): resitration search results: cdm_compose_url(): missing pathParameter 0 for !uri_...
The registration search results page shows errors:
~~~
cdm_compose_url(): missing pathParameter 0 for !uri_patte...
Andreas Kohlbecker
02:05 PM Revision 2b4872ec (taxeditor): correct handling of allowOverride in taxonnode admin preferences
Katja Luther
02:04 PM Revision e056e66e (taxeditor): fix #8226: add new preferences for modifiers
Katja Luther
01:59 PM Revision 6730fa80 (cdmlib): ref #8226: add new preferencePredicate for modifiers
Katja Luther
01:28 PM Revision ae492166 (taxeditor): Combine "feature" and "question" column
Patrick Plitzner
12:12 PM Revision ccd07768 (cdmlib): ref #8450 Speed up loading of categorical state data
Patrick Plitzner
11:48 AM Revision 2de9b87d (taxeditor): Fix "feature" column
Patrick Plitzner

09/24/2019

07:14 PM Revision f2f8c0cc (cdmlib): ignore EuroPlusMedCondensedDistributionComposerTest again. Throws exc...
Andreas Müller
07:08 PM Revision 55ef5e30 (cdmlib): refactoring
pplitzner
04:28 PM Revision 51f36cbb (cdmlib): ref #8450 Only aggregate statistical quantitative data
Patrick Plitzner
03:34 PM Revision f820f667 (cdmlib): ref #8450 Do not show duplicate categorical states in aggregation
Patrick Plitzner
03:34 PM Revision 0bdf5a9c (taxeditor): Add "feature" column to polytomous key node editor
Patrick Plitzner
03:31 PM Revision 33be43d1 (taxeditor): Fix potential NPE
Patrick Plitzner
02:40 PM Revision fa72a2a0 (cdmlib): cleanup KeyStatement and PolytomousKeyNode
Andreas Müller
02:40 PM Revision 416261db (cdmlib): cleanup
Andreas Müller
02:40 PM Revision 9ecae4a9 (cdmlib): unignore EuroPlusMedCondensedDistributionComposerTest
Andreas Müller
11:35 AM Revision 7bb2a528 (taxeditor): Merge branch 'master' into develop
Katja Luther
11:33 AM Revision 21e25285 (taxeditor): fix import
Katja Luther
10:55 AM Revision 420b21d7 (taxeditor): Merge branch 'master' into develop
Katja Luther
10:48 AM Revision 092b48da (taxeditor): fix compile error
Katja Luther

09/23/2019

02:47 PM Revision e8a240c5 (cdmlib): ref #8467 Fix re-save problem when deleting clone sources
Patrick Plitzner
02:39 PM Revision 517899da (taxeditor): Add description types to description detail element
Patrick Plitzner
01:59 PM Revision 91f6c4c6 (cdm-server): Merge branch 'release/5.10.0' into develop
jenkins
01:59 PM Revision 7cdc9603 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
01:58 PM Revision 77572806 (cdm-server): updating poms for branch'release/5.10.0' with non-snapshot versions
jenkins
01:58 PM Revision 3a20e9fa (cdm-webapp): Merge branch 'release/5.10.0' into develop
jenkins
01:58 PM Revision 6eea7617 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
01:57 PM Revision 1fb06c09 (cdm-webapp): updating poms for branch'release/5.10.0' with non-snapshot versions
jenkins
01:57 PM Revision 8e4d8682 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.10.0
jenkins
01:38 PM Revision 93c5fb44 (cdmlib): Revert "Revert "ref #8467 Save cloned source description for aggregat...
This reverts commit d646ba64ca8adcdfcc04b21e80c9d98da6b6f6f3. Patrick Plitzner
01:31 PM Revision 06da5617 (cdm-vaadin): Merge branch 'release/5.10.0' into develop
jenkins
01:31 PM Revision b44966bc (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
01:27 PM Revision 53bf34b2 (cdm-vaadin): updating poms for branch'release/5.10.0' with non-snapshot versions
jenkins
01:27 PM Revision 32041f6c (cdm-vaadin): jenkins bumping cdmlib.version to 5.10.0
jenkins
01:27 PM Revision 619409dc (taxeditor): Merge branch 'release/5.10.0' into develop
jenkins
01:27 PM Revision 807d4d22 (taxeditor): Merge branch 'release/5.10.0'
jenkins
01:26 PM Revision 7d314a95 (cdm-dataportal): Merge branch 'release/5.10.0' into develop
jenkins
01:26 PM Revision 099d2f35 (cdm-dataportal): updating poms for branch'release/5.10.0' with non-snapshot ve...
jenkins
01:26 PM Revision 854c6849 (cdm-dataportal): release-preparation: production level css
jenkins
01:25 PM Revision 3426fa1f (cdmlib): Updating develop poms back to pre merge state
jenkins
01:25 PM Revision e6b50446 (cdmlib): Merge branch 'master' into develop
jenkins
01:25 PM Revision b088e497 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
01:25 PM Revision da9461a4 (cdmlib): Merge branch 'release/5.10.0'
jenkins
01:03 PM Revision b7402ebb (cdmlib): updating poms for branch'release/5.10.0' with non-snapshot versions
jenkins
12:57 PM bug #8566 (New): Recursive aggregation for common parent taxon does not work if not in data set
If you aggregate a dataset and the common parent taxon is not part of the data set the aggregation will not performed... Patrick Plitzner
12:31 PM Revision 8f35b694 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.10.0-S...
jenkins
12:31 PM Revision 43ba9e4c (cdm-webapp): updating poms for 5.11.0-SNAPSHOT development
jenkins
12:31 PM Revision 7bbf3808 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.11.0-S...
jenkins
12:31 PM Revision fd9734ef (cdm-server): updating poms for 5.11.0-SNAPSHOT development
jenkins
12:30 PM Revision dddf4caf (cdm-dataportal): updating poms for 5.11.0-SNAPSHOT development
jenkins
12:30 PM Revision 83f6b260 (taxeditor): Updated version in pom / project files to taxeditor version : 5.11...
jenkins
12:30 PM Revision cb1e67fb (taxeditor): Updated version in pom / project files to taxeditor version : 5.10...
jenkins
12:27 PM Revision 0c20eece (cdm-vaadin): jenkins bumping cdmlib.version to 5.10.0-SNAPSHOT
jenkins
12:27 PM Revision ad2d55ee (cdm-vaadin): updating poms for 5.11.0-SNAPSHOT development
jenkins
12:27 PM Revision 16928bc0 (cdm-vaadin): updating poms for 5.10.0 branch with snapshot versions
jenkins
12:27 PM Revision f44bf7da (cdm-vaadin): jenkins bumping cdmlib.version to 5.11.0-SNAPSHOT
jenkins
12:23 PM Revision 06f202a9 (cdmlib): updating poms for 5.11.0-SNAPSHOT development
jenkins
12:13 PM Revision a32f2bd0 (cdmlib): ref #1444 add new ISourceable.add method
Andreas Müller
12:12 PM Revision 3df6d29d (cdmlib): cleanup condensedDistribution classes
Andreas Müller
11:07 AM Revision d646ba64 (cdmlib): Revert "ref #8467 Save cloned source description for aggregation"
This reverts commit 16bda3fbbc8445d98653d209e8fe27f611a99890. Patrick Plitzner
10:21 AM Revision 16bda3fb (cdmlib): ref #8467 Save cloned source description for aggregation
pplitzner
10:16 AM Revision 3161ee3f (cdm-dataportal): fix #8565 switching to fa-external-link-square-alt as fa-exte...
Andreas Kohlbecker
09:46 AM bug #8565: external links and dois no longer showing up
fixed, please review Andreas Kohlbecker
09:44 AM bug #8565 (Resolved): external links and dois no longer showing up
Applied in changeset commit:cdm-dataportal|d337d8518ad929552aed9a5af0aaf5bd2395ac16. Andreas Kohlbecker
09:43 AM bug #8565 (Closed): external links and dois no longer showing up
Example: http://cichorieae.e-taxonomy.net/portal/cdm_dataportal/taxon/79d6b29a-7a73-42b6-a024-2ab35fbd60ff
the ref...
Andreas Kohlbecker
09:45 AM Revision 667f16d4 (cdm-dataportal): proper initialization of block->content array
Andreas Kohlbecker
09:44 AM Revision d337d851 (cdm-dataportal): fix #8565 switching to fa-external-link-alt as fa-external-li...
Andreas Kohlbecker

09/20/2019

05:35 PM bug #8564 (Closed): Link to PlatformDocumentation wiki page
Andreas Kohlbecker
05:34 PM bug #8564 (Resolved): Link to PlatformDocumentation wiki page
Applied in changeset commit:taxeditor|55f947d6422ef6e30616a96c07b9e3ac80081e47. Andreas Kohlbecker
04:31 PM bug #8564 (Closed): Link to PlatformDocumentation wiki page
The taxeditor site page *manual* needs to link to the PlatformDocumentation page
https://cybertaxonomy.eu/taxedi...
Andreas Kohlbecker
05:34 PM Revision 55f947d6 (taxeditor): fix #8564 linking to documentation in the wiki
Andreas Kohlbecker
03:53 PM EDIT Platform Etablierung task #8563 (Closed): Implement process to generate PDFs from the docx files
pdf cretated and published in [[edit:PlatformDocumentation]] Andreas Kohlbecker
03:52 PM EDIT Platform Etablierung task #8563 (Resolved): Implement process to generate PDFs from the docx files
Script attachment:make-pdfs.sh created in `bgbmc2.bgbm.fu-berlin.de:/GRUPPEN/BDI/EDIT-Plattform/_Latest Versions/User... Andreas Kohlbecker
03:49 PM EDIT Platform Etablierung task #8563 (Closed): Implement process to generate PDFs from the docx files
The documentation which is managed in `bgbmc2.bgbm.fu-berlin.de:/GRUPPEN/BDI/EDIT-Plattform/_Latest Versions/User Man... Andreas Kohlbecker
12:08 PM Revision 41806880 (taxeditor): Add Character to "Other" section in term editor
Patrick Plitzner
11:33 AM Revision 581e5401 (taxeditor): ref #8562: add override allowed column to distr. status preference...
Katja Luther
11:14 AM bug #8562 (New): Remaining issues for preference pages
* Menu Labels:
* Multi-Language Support => Application
* Available Languages => Multi-Language Support ...
Katja Luther
11:03 AM Revision b9731166 (taxeditor): ref #8489: move taxonnode wizard pref to navigator page
Katja Luther
10:21 AM Revision c82a0bdd (taxeditor): ref #8489: some issues in DistributionStatusPreferences
Katja Luther
09:09 AM EDIT Platform Etablierung task #8561 (New): Evaluation of options for a "one klick" setup in cloud environments

* Installation auf Knopfdruck bei Cloude-Anbietern (Google, AWS, ...)?
* Wie kann das technisch so realisiert werd...
Andreas Kohlbecker
09:08 AM EDIT Platform Etablierung report #8560 (New): Identification of single suser problems with the paltform
copied from [[Meeting_2019-09-07]]
* bei der lokalen Platform-Installation
* fehlendes Backup
Andreas Kohlbecker
07:45 AM Revision cdf40074 (taxeditor): Do not show subtypes in term editor
Patrick Plitzner
07:45 AM Revision 91568991 (cdmlib): Add flag to filter subtypes in service method
Patrick Plitzner

09/19/2019

06:31 PM EDIT Platform Etablierung task #8559 (New): Revision of the technical concept for the demosites
from [[Meeting_2019-09-02]]
* "AK entwickelt Konzept für die Demo-Sites und damit den technischen Hintergrund von ...
Andreas Kohlbecker
06:28 PM EDIT Platform Etablierung task #8558 (New): Questionnaire to get user feedback
from [[Meeting_2019-09-02]]
AK entwickelt einen einen Fragenkatalog, anhand desssen Interviews mit Nutzern geführt...
Andreas Kohlbecker
06:25 PM EDIT Platform Etablierung task #8557 (New): reorganization of documentation
Spezialfunktionen von einleitenden Teilen abgrenzen und in Teildokumentationen gliedern. Andreas Kohlbecker
06:24 PM EDIT Platform Etablierung report #8556 (New): sifting of existing documentation
Documentation mainly exists at `bgbmc2.bgbm.fu-berlin.de:/GRUPPEN/BDI/EDIT-Plattform/_Latest Versions/User Manual/`
...
Andreas Kohlbecker
05:25 PM EDIT Platform Etablierung task #8555 (In Progress): Evaluate document format and management for the documentation
1. research on suitable document formats
1. documentation within the taxeditor would be preferable (see [[Meeting_20...
Andreas Kohlbecker
04:34 PM Revision 4f8c0d92 (taxeditor): Fix potential NPE
Patrick Plitzner
04:31 PM Revision eeca944f (cdmlib): cleanup
Andreas Müller
04:28 PM bug #8488 (Closed): Characters can not be added to feature trees
Currently it is not possible to select a Character term itself because the vocabulary for that is not accessible from... Patrick Plitzner
03:06 PM bug #8488 (Feedback): Characters can not be added to feature trees
Adding via context menu is possible but not via d&d. To close this ticket we should either implement d&d also or crea... Andreas Müller
04:28 PM feature request #8554 (New): Allow drag&drop from character into FeatureTrees
Currently it is not possible to select a Character term itself because the vocabulary for that is not accessible from... Patrick Plitzner
03:23 PM bug #8329 (Worksforme): Multiple representations exception when adding name relationship with alr...
I also can't reproduce anymore. Andreas Müller
01:54 PM Revision efc4a9f8 (taxeditor): ref #8494: layout issues in abcd import preference page
Katja Luther
01:43 PM Revision ce80191a (taxeditor): ref #7321 fix NPE in PolytomousKeyListLabelProvider (II)
Andreas Müller
01:33 PM bug #8382 (Closed): Local Supplemental Data Source Preferences should reflect the state of admin ...
Works as expected and can be closed Andreas Müller
01:30 PM Revision 5c7792df (cdmlib): ref #8450 Move key generation to long running task
Patrick Plitzner
01:30 PM Revision 8ab41788 (taxeditor): ref #8450 Move key generation to long running task
Patrick Plitzner
01:28 PM bug #8034 (Closed): Recently used references shows all references
works fine Patrick Plitzner
01:16 PM Revision a6381bb2 (cdmlib): fix NPE in abcd import
Katja Luther
12:40 PM Revision 1d03dc2b (cdmlib): minor
Katja Luther
12:27 PM Revision 152b29a9 (cdmlib): ref #8469 fix NoSuchElementException (but issue itself might still ...
Andreas Müller
12:23 PM Revision 2033d56d (cdmlib): add derivedFrom to propertyPath in findFieldUnitDTO
Katja Luther
11:58 AM Revision f74a7b15 (taxeditor): minor
Patrick Plitzner
11:41 AM Revision 9b1e9a85 (cdmlib): ref #8533: minor
Katja Luther
11:27 AM Revision 581bf882 (taxeditor): ref #7321 fix NPE in PolytomousKeyListLabelProvider
Andreas Müller
11:26 AM Revision 2f767512 (cdmlib): removing AdvancedBeanInitializer log level TRACE
Andreas Kohlbecker
10:26 AM bug #8553: progress monitor needs information about running process
Is there a reason why you explicitly mentioned cdmlight in title? I think this information should be available for al... Andreas Müller
09:57 AM bug #8553 (New): progress monitor needs information about running process
long running tasks like the cdmlight export sometimes need a lot of ressources.
To get more informations about why ...
Katja Luther
10:09 AM Revision 301fa63e (cdmlib): ref #8450 Optimize aggregation
- Only aggregate descriptions with character data
- delete all aggregation before new aggregation
Patrick Plitzner
09:55 AM Revision c335a01c (taxeditor): ref #8450 Create and cache label for quantitative data in row wrapper
Patrick Plitzner
09:45 AM bug #8533: missing collector and fieldnumber in abcd import
the imported field unit for B GT 0023581 has collector and fieldNumber see attached file (picture607-1.png) Katja Luther
09:42 AM bug #8533: missing collector and fieldnumber in abcd import
Patrick Plitzner wrote:
> ok, this seems to be a bigger problem.
>
> If you compare your debug output with the tw...
Katja Luther
09:42 AM Revision 7a6a6604 (cdmlib): ref #8450 Create and cache label for quantitative data in row wrapper
Patrick Plitzner

09/18/2019

07:36 PM bug #8329 (Feedback): Multiple representations exception when adding name relationship with alrea...
Andreas Müller
03:55 PM bug #8329 (Closed): Multiple representations exception when adding name relationship with already...
Played aroung on on rem_conf_am with nightly build and could not reprodcue the problem Patrick Plitzner
06:23 PM Revision 4c331cd7 (cdm-dataportal): fixing and improving test assertions
Andreas Kohlbecker
05:56 PM bug #8034 (Resolved): Recently used references shows all references
fix is committed, please review. Katja Luther
05:51 PM bug #8034: Recently used references shows all references
Patrick Plitzner wrote:
> Hmm, now when I already have a reference for the secundum, the selection dialog only shows...
Katja Luther
05:26 PM bug #8034: Recently used references shows all references
Hmm, now when I already have a reference for the secundum, the selection dialog only shows some of the last used refe... Patrick Plitzner
05:11 PM bug #8034: Recently used references shows all references
Katja Luther wrote:
> Did you selected the book in a selection dialog or only in bulk editor? The recently selected ...
Patrick Plitzner
04:53 PM bug #8034: Recently used references shows all references
Did you selected the book in a selection dialog or only in bulk editor? The recently selected references are only for... Katja Luther
03:42 PM bug #8034: Recently used references shows all references
ok, I tested the recently selected references with Article and Journal as InReference which works fine. Nevertheless ... Patrick Plitzner
03:38 PM bug #8034: Recently used references shows all references
Another thing I tested:
1. I imported a specimen via ABCD import which had the generic reference "DNA_Bank"
1. I ...
Patrick Plitzner
03:35 PM bug #8034: Recently used references shows all references
the reference needs to be an article because therefore an inreference type exist Katja Luther
03:33 PM bug #8034 (Feedback): Recently used references shows all references
I am not sure if I tested this correctly. Here is what I did:
1. I selected a Generic reference as secundum for on...
Patrick Plitzner
05:55 PM Revision 25e92728 (taxeditor): ref #8034: fixes for recently selected references
Katja Luther
05:42 PM Revision 3ea88987 (taxeditor): ref #8034: fix handling with recently selected references in s
Katja Luther
05:36 PM Revision 030ddaa9 (taxeditor): ref #8450 Only save edited rows in matrix editor
Patrick Plitzner
05:05 PM bug #8386 (Closed): Disable admin menu when not logged into a DB
works fine Katja Luther
02:17 PM bug #8386 (Resolved): Disable admin menu when not logged into a DB
fixed with commit:taxeditor|c2b34f0b89feff1b91fdb6eaa3434cad9dfa510f Patrick Plitzner
05:04 PM bug #8533: missing collector and fieldnumber in abcd import
ok, this seems to be a bigger problem.
If you compare your debug output with the two files it seems like it has mi...
Patrick Plitzner
04:47 PM bug #8533 (In Progress): missing collector and fieldnumber in abcd import
I think we have to move this to 5.11 Katja Luther
04:46 PM bug #8533: missing collector and fieldnumber in abcd import
Patrick Plitzner wrote:
> Katja Luther wrote:
> > the collector problem is solved, but the fieldnumber is not deliv...
Katja Luther
04:44 PM bug #8533: missing collector and fieldnumber in abcd import
Katja Luther wrote:
> ah there is another problem, the gathering agent for the tissue is Hutchison and for the tissu...
Patrick Plitzner
04:43 PM bug #8533: missing collector and fieldnumber in abcd import
Katja Luther wrote:
> the collector problem is solved, but the fieldnumber is not delivered. I debugged and also loo...
Patrick Plitzner
04:37 PM bug #8533: missing collector and fieldnumber in abcd import
ah there is another problem, the gathering agent for the tissue is Hutchison and for the tissue sample Lautner Katja Luther
04:34 PM bug #8533: missing collector and fieldnumber in abcd import
the collector problem is solved, but the fieldnumber is not delivered. I debugged and also looked at the output and t... Katja Luther
03:20 PM bug #8533 (Feedback): missing collector and fieldnumber in abcd import
I attached the two sample file: one is the DNA unit the other one the associated tissue sample.
I tested on night...
Patrick Plitzner
05:00 PM feature request #8489: Further issues for DB preferences
move to 5.11 for a last review whether all (wanted) preferences are available as db preferences Katja Luther
04:58 PM task #8458 (In Progress): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
Katja Luther
04:56 PM bug #8494 (In Progress): Better ABCD Preferences Page
I move this to 5.11 to solve the layout issues. Katja Luther
02:39 PM bug #8494: Better ABCD Preferences Page
Andreas Müller wrote:
> >This is fixed but still "Restore default" does not completely remove the preference (and ev...
Katja Luther
02:25 PM bug #8494: Better ABCD Preferences Page
>This is fixed but still "Restore default" does not completely remove the preference (and even does not clear the exi... Andreas Müller
02:23 PM bug #8494: Better ABCD Preferences Page
The "New provider" text field should have a label "New provider" or similar. Also the "Add Provider" button should be... Andreas Müller
02:22 PM bug #8494: Better ABCD Preferences Page
Second time it worked but still there was an empty entry in the provider list Andreas Müller
02:20 PM bug #8494: Better ABCD Preferences Page
Trying to create a new provider results in
~~~
login : admin
editor version : 5.10.0.201909180750
server : loc...
Andreas Müller
02:19 PM bug #8494 (Feedback): Better ABCD Preferences Page
is #8385#note-51 already fixed? It is part of **this** ticket description! (copied from)
The field NomenclaturalCo...
Andreas Müller
01:10 PM bug #8494 (Resolved): Better ABCD Preferences Page
The issues above are solved, so I think we can close this ticket. Katja Luther
04:54 PM Revision fde0968c (cdm-dataportal): fixing and improving test assertions
Andreas Kohlbecker
04:54 PM Revision d8de8d4d (cdm-dataportal): fixing order of typedesignations in registration page
Andreas Kohlbecker
04:53 PM task #8456 (Closed): FieldUnitDTO: remove newInstanceMethod
Katja Luther wrote:
> sorry I missed to add the last commit to this ticket.
Yes, I just realized that, too.
co...
Patrick Plitzner
04:51 PM task #8456 (Resolved): FieldUnitDTO: remove newInstanceMethod
Katja Luther
04:50 PM task #8456: FieldUnitDTO: remove newInstanceMethod
sorry I missed to add the last commit to this ticket. Katja Luther
04:41 PM task #8456: FieldUnitDTO: remove newInstanceMethod
Katja Luther wrote:
> Patrick Plitzner wrote:
> > looks fine. Only on question: Why did you remove the null check w...
Katja Luther
04:39 PM task #8456: FieldUnitDTO: remove newInstanceMethod
Katja Luther wrote:
>
> the null check is now in the gatheringEventDto
The parameter `gathering` is not checked...
Patrick Plitzner
04:30 PM task #8456: FieldUnitDTO: remove newInstanceMethod
Patrick Plitzner wrote:
> looks fine. Only on question: Why did you remove the null check when creating the Gatherin...
Katja Luther
04:08 PM task #8456 (Feedback): FieldUnitDTO: remove newInstanceMethod
looks fine. Only on question: Why did you remove the null check when creating the GatheringEvent -> https://dev.e-tax... Patrick Plitzner
04:04 PM feature request #8350 (Closed): Search dialog for named areas should work with abbreviations
tested on nightly. works fine. Patrick Plitzner
03:51 PM feature request #8123 (Closed): Make available features a DB preference
tested on nightly for local and DB prefs. works fine. Patrick Plitzner
03:43 PM task #8130: Check if related feature data is cleared when supported facts type is changed
Move to next milestone for remaining discussion Patrick Plitzner
03:43 PM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix
Move to next milestone because this is still considered experimental Patrick Plitzner
03:05 PM bug #7321 (Closed): multi-language textfields should not show empty text when there is text
tested on nightly. works fine Patrick Plitzner
02:42 PM Revision c1bd899f (taxeditor): use last selected abcd provider for import
Katja Luther
02:24 PM feature request #8539 (Closed): Add IndividualsAssociation when adding specimens to the character...
IndividualsAssocations are created when adding specimens which do not yet have one.
Still experimental so no revie...
Patrick Plitzner
02:22 PM feature request #8335 (Closed): Store character matrix table state as DB preference
closing the ticket -> created a new ticket for using the preference cache #8552 Patrick Plitzner
02:22 PM bug #8552 (New): Avoid DB call for matrix state DB preferences
Copied from #8335:
looks fine, but if you want to avoid a db call, you can use CdmPreferenceCache.instance().get(P...
Patrick Plitzner
02:19 PM bug #8488 (Resolved): Characters can not be added to feature trees
Patrick Plitzner
02:11 PM Revision 5bceba97 (taxeditor): ref #8494: save last abcd import configurator
Katja Luther
01:46 PM feature request #8469 (In Progress): Open PolytomousKeyGenerator issues
Andreas Müller
01:39 PM bug #8517 (Feedback): SpecimenOrObservation: data from protected titleCache missig in portal pages
This seems to work but handling the protected title cache of the **field** unit in the **derived**unit cachestrategy ... Andreas Müller
01:20 PM Revision 547189fd (taxeditor): ref #8494: abcd config nom. code is set to default nom. code
Katja Luther
01:03 PM Revision 5d616c75 (taxeditor): fix taxon search configurator preference
Katja Luther
12:46 PM Revision 49fbe818 (cdmlib): add ExactValue to possible input for PolytomousKeyGenerator
Andreas Müller
11:43 AM Revision e07260d7 (cdmlib): some cleanup in PolytomousKeyGenerator
Andreas Müller
11:39 AM Revision 430c5895 (taxeditor): fix taxon search configurator preference
Katja Luther
10:49 AM Revision b42c7515 (cdmlib-apps): ref #8509 fix missing IsraeliExclusiveEconomicZone issue
Andreas Müller
10:48 AM Revision c32dfb15 (cdmlib-apps): ref #1444, ref #8508, ref #8509 improve ERMS notes pipeline
Andreas Müller
10:44 AM Revision 23a201e7 (cdmlib-apps): ref #1444, ref #8508, ref #8508 Finish ERMS image import and som...
Andreas Müller
10:41 AM Revision 79c223b6 (cdmlib-apps): cleanup
Andreas Müller
10:37 AM Revision 93243e0f (cdmlib): ref #1444 fix missing status in DistributionCreation for ERMS
Andreas Müller
10:36 AM Revision 2dd7e54d (cdmlib): cleanup
Andreas Müller
09:36 AM Revision 9fb73f2a (taxeditor): minor in l10n
Katja Luther
 

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