Activity
From 07/16/2024 to 08/14/2024
08/12/2024
- 06:14 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- ~~~
String pattern = "#.###";
DecimalFormatSymbols otherSymbols = new DecimalFormatSymbols();
...
08/11/2024
- 12:32 AM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- Minor note: tests are easier to read if in something like
~~~
matchResults = nameMatchingService.findMatchingName... - 12:28 AM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- Your tests ofen do something like
~~~
assertEquals("0.969", formmattedDouble);
~~~
This is difficult to revi... - 12:25 AM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- In the tests you do something like
~~~
matchResults = nameMatchingService.findMatchingNames(inputName, true, true... - 12:21 AM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- The NameMatchingResult has exactResult and bestResults. This is confusing as bestResult is actually not the best (exa...
- 12:16 AM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- Andreas Müller wrote in #note-25:
> You do not seem to compare exBasionymAuthors
I have to correct myself. Now I ... - 12:15 AM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- You generally seem to compare all authors together. E.g. in
~~~
String combinedAuthorCacheDB = exCombinationAutho... - 12:07 AM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- You do not seem to compare exBasionymAuthors
- 12:03 AM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- You handle the case
~~~
if (excludeBasionymAuthors == false && excludeExAuthors == false) {
~~~
I guess this...
08/10/2024
- 11:52 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- in code like
~~~
if (excludeExAuthors) {
for (int i = 0 ; i < results.size(); i++) {
... - 11:45 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- Why is there a step result shaping in code "findMatchingNamesUnshaped()"? This sounds contradictory.
- 11:43 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- In findMatchingNamesUnshaped() you repeat the same code
~~~
// 7. Result shaping
Collect... - 11:37 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- Why is there a comparison
~~~
if (distanceAuthorComparison <= 0) {
~~~
Is it really possible that the distan... - 10:46 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- modifiedDamerauLevenshteinDistance() starts with
~~~
if (str1 == str2) {
~~~
I guess you mean
~~~
if (str1.equals... - 10:28 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- In authorMatch you use
~~~
distanceAuthorComparison/3
~~~
3 seems to be a hardcoded weight for the final dis... - 10:24 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- In authorMatch() better use
~~~
for (SingleNameMatchingResult singleResult : results){
...
}
~~~
or
~~~
result... - 06:58 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
In postfilterEpithet() I do not understand why a list is returned. It looks like the laist can be filled only 1x so...- 06:45 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- Minor issue:
Instead of using string comparison with null, e.g.
~~~
} else if (specificEpithetQuery != null &... - 06:38 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- In compareGenus why do you pass the empty parameter postFilteredGenusOrUninominalWithDis? It seems to be a simple ret...
- 06:16 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- Minor issue: please remove all documentation that has no content like:
~~~
/**
* @param config
* @para... - 06:13 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- In NameMatchingService there is often code like
~~~
try {
combinationAuthor = name.getCombin... - 06:08 PM feature request #10525: Implementation of name matching search and remaining issues for fuzzy search
- It is inconsistent that the input parameter maxDistance is integer and by default >1 while the resulting distance is ...
- 06:07 PM feature request #10525 (In Progress): Implementation of name matching search and remaining issues for fuzzy search
- Why is the title of this ticket "Implementation of name matching search and remaining issues for fuzzy search"? What ...
- 06:05 PM feature request #10178 (Closed): Implement fuzzy name matching
- 02:57 PM Revision 42e06f73 (cdmlib-apps): minor
- 02:56 PM Revision 4cfb1c4e (cdmlib-apps): ref #10235 add cdmlight command line export for E+M
- 02:50 PM Revision c378088c (cdmlib): cleanup and minor issues
08/08/2024
- 08:14 PM bug #10579 (Resolved): Protected titleCaches for empty teams not handled correctly in TaxonNameFormatter
- Please review.
- 05:14 PM bug #10579 (Resolved): Protected titleCaches for empty teams not handled correctly in TaxonNameFormatter
- ... (or TaxonNameDefaultCacheStrategy). This is relevant in taxonPageDto as this is created from cacheStrategy only, ...
- 07:59 PM Revision 938b250a (cdmlib): ref #10579 handle protected titleCache in Team formatter correctly
08/07/2024
- 10:42 AM Revision af1c59c9 (cdmlib-apps): ref #10235 add EuroMedWfoIdentifierActivator
- 10:36 AM Revision 892eebc1 (cdmlib-apps): cleanup
08/06/2024
- 01:17 PM bug #10578: Type specimen source comparator in cdmlight throws NPE
- please review
- 01:16 PM bug #10578 (Resolved): Type specimen source comparator in cdmlight throws NPE
- Applied in changeset commit:cdmlib|1dbdf638883e99441b5de1927d41c07efa428632.
- 11:51 AM bug #10578 (Resolved): Type specimen source comparator in cdmlight throws NPE
- ... if both citations or both date published are null.
- 01:16 PM Revision 1dbdf638 (cdmlib): fix #10578 fix NPE in source comparator and extract to model.compare
08/02/2024
- 03:37 PM bug #10563 (Closed): Specimen selection dialog should show a short description column
- Code looks good and the result as well. So we can close the ticket.
- 02:19 PM bug #10563 (Feedback): Specimen selection dialog should show a short description column
- CollectorNumber still seems to missing at least if the field number is meant by collector number. There seems to be s...
- 11:29 AM bug #10563 (Resolved): Specimen selection dialog should show a short description column
- Now for concatenation CdmUtils.concat() is used and the country is added, please review.
- 02:38 PM bug #10466: Open issues in logfiles
- Currently there are again a lot of LIE (many of them in TypeDesignationBaseBeanProcessor), the full stacktrace is:
~... - 02:25 PM bug #10577 (Rejected): Unexpected names in ColDP export
- As this is a pure data issue and we decided not to clean it up as it is not critical if the duplicates are also avail...
- 02:18 PM Revision ebed5d56 (cdmlib): ref #10563 cleanup null handling
- 02:11 PM Revision b93e887f (cdmlib): cleanup
- 02:11 PM Revision 94b9240b (cdmlib): ref #10563 replace collectorsNumber by fieldNumber
- 02:00 PM Revision ca2aa96b (cdmlib): cleanup
- 01:57 PM Revision c09eba68 (cdm-dataportal): code cleaning to avoid warnings
- 01:56 PM Revision e23c9649 (cdm-dataportal): code cleaning to avoid warnings
- 01:25 PM Revision b2de164f (cdmlib): cleanup
- 12:36 PM Revision dfc9bd65 (taxeditor): replace Umlaute for colDP file name
- 11:22 AM Revision fbc61bee (cdmlib): ref #10563: add country and code cleaning
- 10:26 AM bug #9979 (Resolved): Flora Greece shows large images
- This is fixed for the profile image as well, already installed a hotfix branch on production.
- 10:14 AM Revision b06b6e7c (taxeditor): Merge branch 'hotfix/5.45.1'
- 09:26 AM Revision 9937bc88 (taxeditor): fix NPE in ColDP export Wizard
- 09:21 AM Revision 358bcbe4 (taxeditor): Updated version in pom / project files to taxeditor version : 5.45.1 and cdmlib version : 5.45.0
- 09:12 AM Revision 8de85588 (cdmlib): ref #10568: iterate over all repr and parts of image
- 09:11 AM Revision 3b23264c (taxeditor): fix NPE in ColDP export Wizard
08/01/2024
- 10:02 PM bug #10562 (Closed): CdmLight and ColDP must not contain names not included in the synonymy and not linked directly
- The ColDP issue is different (#10577) so we can close this ticket.
- 04:26 PM bug #10562: CdmLight and ColDP must not contain names not included in the synonymy and not linked directly
- related issue moved to #10574
- 09:25 PM bug #10577: Unexpected names in ColDP export
- SQL to find basionym relationships that link to unpublished names
~~~ sql
SELECT syn.titleCache syn, sn.titleCache s... - 09:06 PM bug #10577: Unexpected names in ColDP export
- So this seems to be a data issue, not an export issue. We need to find out how to fix these data issues.
- 09:06 PM bug #10577 (Resolved): Unexpected names in ColDP export
- >Der gleiche Fall scheint auch bei Allium rotundum L., Allium rupestre Steven und A. saxatile M.Bieb. vorzuliegen.
... - 08:50 PM bug #10577: Unexpected names in ColDP export
- In the given case there exists a "heterotypic" synonym Allium paniculatum subsp. pallens (L.) K. Richt. which has the...
- 07:54 PM bug #10577: Unexpected names in ColDP export
- This has not been fixed by #10562
- 07:53 PM bug #10577 (Rejected): Unexpected names in ColDP export
- WGB:
ich bin auf folgendes gestoßen:
Allium pallens L. wird mir im COLDP Export als Duplikat ausgegeben:
|Name... - 08:05 PM Revision 1e95310c (cdmlib): cleanup
- 06:47 PM feature request #10552 (Closed): Change default anntotation type for Vaadin submitters to internal (PhycoBank)
- 06:38 PM feature request #10552: Change default anntotation type for Vaadin submitters to internal (PhycoBank)
- Review: checked with production: Submitter submits a note, when curator takes over the text is "internal". That is ex...
- 06:13 PM Revision fe5b2280 (cdm-dataportal): ref #9979: handle representation for profile image correctly
- 06:11 PM Revision 0ffead0e (cdm-dataportal): ref #9979: handle representation for profile image correctly
- 05:19 PM bug #10357 (Closed): CDMLight fix handling for names used as synonym and accepted taxa
- I exported the data with the latest version and Oncostema africanum appears only once. So I guess this an be closed.
- 04:21 PM bug #10557 (Closed): Avoid creating empty annotations in phycobank
- I removed all the above mentioned empty records so we can close this ticket.
- 03:58 PM bug #10543: ChildNodesOf webservice does not show taxa without secundum, rank or name
- The above issues are to be handled in #10507
- 12:12 PM bug #10543: ChildNodesOf webservice does not show taxa without secundum, rank or name
- Andreas Müller wrote in #note-7:
> https://api.cybertaxonomy.org/cichorieae/portal/classification/534e190f-3339-49ba... - 11:58 AM bug #10543: ChildNodesOf webservice does not show taxa without secundum, rank or name
- https://api.cybertaxonomy.org/cichorieae/portal/classification/534e190f-3339-49ba-95d9-fa27d5493e3e/childNodesAt/ac47...
- 03:36 PM bug #9979: Flora Greece shows large images
- KL:
jetzt werden die Thumbnails geladen, man erkennt das nicht, indem man mit der Maus über das Bild geht, sondern... - 02:05 PM bug #9979: Flora Greece shows large images
- Andreas Müller wrote in #note-27:
> Katja Luther wrote in #note-26:
> > But the search shows thumbnails:
>
> Yes... - 12:44 PM bug #9979: Flora Greece shows large images
- Katja Luther wrote in #note-26:
> But the search shows thumbnails:
Yes, but this ticket is not about the search b... - 12:41 PM bug #9979: Flora Greece shows large images
- Andreas Müller wrote in #note-25:
> Katja Luther wrote in #note-24:
> > Andreas Müller wrote in #note-23:
> > > Ka... - 12:31 PM bug #9979: Flora Greece shows large images
- Katja Luther wrote in #note-24:
> Andreas Müller wrote in #note-23:
> > Katja Luther wrote in #note-22:
> > > Most... - 12:24 PM bug #9979: Flora Greece shows large images
- Andreas Müller wrote in #note-23:
> Katja Luther wrote in #note-22:
> > Most images in flora greece don't have differ... - 11:50 AM bug #9979: Flora Greece shows large images
- Katja Luther wrote in #note-22:
> Most images in flora greece don't have different representations, so we should cre... - 11:46 AM bug #9979: Flora Greece shows large images
- Most images in flora greece don't have different representations, so we should create a transformation rule for these...
- 11:32 AM bug #9979 (In Progress): Flora Greece shows large images
- The thumbnails in the image gallery are still using the large sized images.
- 11:12 AM bug #9979 (Resolved): Flora Greece shows large images
- This seems to be solved by the adaptions of last release, the image of the taxon page is now the medium representatio...
- 02:34 PM Revision ce86188f (cdm-dataportal): ref #9979: handle representation in simple gallery correctly
- 01:22 PM Revision d831f56c (cdm-dataportal): ref #9979: handle representation in simple gallery correctly
- 11:13 AM bug #10181 (Closed): Search images do not show thumbnails
- Andreas Müller wrote in #note-16:
> Ahh, correct. So we take this as final test after release.
The example from n...
07/31/2024
- 06:32 PM Revision 4bf15812 (cdm-webapp): cleanup
- 06:25 PM Revision 5a9f914f (taxeditor): cleanup
- 06:24 PM Revision 1c7009a3 (cdm-dataportal): cleanup
- 06:22 PM Revision da52b902 (cdm-server): Merge branch 'release/5.45.0' into develop
- 06:22 PM Revision 0e9fc7cc (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 06:21 PM Revision 91babf96 (cdm-server): updating poms for branch'release/5.45.0' with non-snapshot versions
- 06:20 PM Revision e3c8f6bf (cdm-webapp): Merge branch 'release/5.45.0' into develop
- 06:20 PM Revision af7cfdee (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 06:20 PM Revision d2efc88b (cdm-webapp): updating poms for branch'release/5.45.0' with non-snapshot versions
- 06:20 PM Revision 413cd34a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.45.0
- 06:20 PM Revision f7123058 (cdm-vaadin): Merge branch 'release/5.45.0' into develop
- 06:20 PM Revision 03d786f1 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 06:19 PM Revision fbd326fa (taxeditor): Merge branch 'release/5.45.0' into develop
- 06:19 PM Revision dd23ed5d (taxeditor): Merge branch 'release/5.45.0'
- 06:17 PM Revision fbec489e (cdm-dataportal): Merge branch 'release/5.45.0' into develop
- 06:17 PM Revision 426ee54e (cdm-vaadin): updating poms for branch'release/5.45.0' with non-snapshot versions
- 06:17 PM Revision ebe01426 (cdm-dataportal): updating poms for branch'release/5.45.0' with non-snapshot versions
- 06:16 PM Revision b10d5a8d (cdm-dataportal): release-preparation: production level css
- 06:16 PM Revision 4056f14b (cdm-vaadin): jenkins bumping cdmlib.version to 5.45.0
- 06:16 PM Revision 0960c6ad (cdmlib): Updating develop poms back to pre merge state
- 06:16 PM Revision a455abd9 (cdmlib): Merge branch 'master' into develop
- 06:16 PM Revision 27a005dd (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 06:16 PM Revision 28cf4989 (cdmlib): Merge branch 'release/5.45.0'
- 05:52 PM Revision 6acd909f (cdmlib): updating poms for branch'release/5.45.0' with non-snapshot versions
- 05:50 PM Revision b1ca1906 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.45.0-SNAPSHOT
- 05:50 PM Revision b8a40663 (cdm-webapp): updating poms for 5.46.0-SNAPSHOT development
- 05:50 PM Revision efe9f6de (cdm-webapp): updating poms for 5.45.0 branch with snapshot versions
- 05:50 PM Revision 1e2a3d2e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.46.0-SNAPSHOT
- 05:49 PM Revision a7df5af2 (taxeditor): Updated version in pom / project files to taxeditor version : 5.46.0-SNAPSHOT and cdmlib version : 5.46.0-SNAPSHOT
- 05:49 PM Revision 9113dabd (taxeditor): Updated version in pom / project files to taxeditor version : 5.45.0 and cdmlib version : 5.45.0
- 05:48 PM Revision f929bb23 (cdm-vaadin): jenkins bumping cdmlib.version to 5.45.0-SNAPSHOT
- 05:48 PM Revision 9124f068 (cdm-vaadin): updating poms for 5.46.0-SNAPSHOT development
- 05:48 PM Revision d82199c6 (cdm-vaadin): updating poms for 5.45.0 branch with snapshot versions
- 05:48 PM Revision 102eb141 (cdm-vaadin): jenkins bumping cdmlib.version to 5.46.0-SNAPSHOT
- 05:47 PM Revision da7112a5 (cdm-server): updating poms for 5.46.0-SNAPSHOT development
- 05:47 PM Revision abf4d036 (cdm-dataportal): updating poms for 5.46.0-SNAPSHOT development
- 05:45 PM bug #10181: Search images do not show thumbnails
- Ahh, correct. So we take this as final test after release.
- 05:40 PM bug #10181 (Resolved): Search images do not show thumbnails
- The link of note-9 is from production.
- 04:59 PM bug #10181 (Feedback): Search images do not show thumbnails
- The link from note-9 still shows a too-large image
- 09:56 AM bug #10181 (Resolved): Search images do not show thumbnails
- Cichorieae images are rotated now and all thumbnails are correctly shown. For Cyprus the rotation of the images will ...
- 05:44 PM Revision c627a65a (cdmlib): updating poms for 5.46.0-SNAPSHOT development
- 05:09 PM bug #10563: Specimen selection dialog should show a short description column
- For concatenation I suggest to use CdmUtils.concat(CharSequence separator, String... strings). This makes the code mu...
- 04:25 PM bug #10563: Specimen selection dialog should show a short description column
- Andreas Müller wrote in #note-5:
> Separators should appear only when necessary
>
> : Specimen selection dialog should show a short description column
- Separators should appear only when necessary
- 02:13 PM bug #10563 (Resolved): Specimen selection dialog should show a short description column
- Now also the collectorTitleCache is available in the short label column. I set this to resolved for review, after the...
- 10:15 AM bug #10563: Specimen selection dialog should show a short description column
- Open issues:
* Country + Collector - 05:02 PM bug #10557: Avoid creating empty annotations in phycobank
- Before closing the ticket the empty annotations should be removed in the DB.
- 02:31 PM bug #10557 (Resolved): Avoid creating empty annotations in phycobank
- Fixed and tested for name annotations, reference annotations, name type annotations and specimen type annotaions
- 04:54 PM bug #10568 (Closed): Manifest files should not be shown in dataportal
- Katja Luther wrote in #note-15:
> Currently the abcd entry does not contain the mimetype, but we could set it during... - 04:30 PM bug #10568 (Resolved): Manifest files should not be shown in dataportal
- 04:21 PM bug #10568: Manifest files should not be shown in dataportal
- Andreas Müller wrote in #note-11:
> Katja Luther wrote in #note-10:
> > There is a media specimen with a manifest fil... - 04:18 PM bug #10568: Manifest files should not be shown in dataportal
- Andreas Müller wrote in #note-12:
> Katja Luther wrote in #note-8:
> > Andreas Müller wrote in #note-5:
> > > The ... - 03:28 PM bug #10568 (Feedback): Manifest files should not be shown in dataportal
- 03:28 PM bug #10568: Manifest files should not be shown in dataportal
- Katja Luther wrote in #note-8:
> Andreas Müller wrote in #note-5:
> > The code seems to be ok on first glance. But ... - 03:26 PM bug #10568: Manifest files should not be shown in dataportal
- Katja Luther wrote in #note-10:
> There is a media specimen with a manifest file:
>
> The Image is shown, but not... - 02:58 PM bug #10568: Manifest files should not be shown in dataportal
- There is a media specimen with a manifest file:
The Image is shown, but n... - 02:53 PM bug #10568: Manifest files should not be shown in dataportal
- Katja Luther wrote in #note-6:
> Andreas Müller wrote in #note-4:
> > Katja Luther wrote in #note-2:
> > > This sh... - 01:13 PM bug #10568: Manifest files should not be shown in dataportal
- Andreas Müller wrote in #note-5:
> The code seems to be ok on first glance. But there seems to be a lot of duplicati... - 10:58 AM bug #10568 (Resolved): Manifest files should not be shown in dataportal
- Andreas Müller wrote in #note-4:
> Katja Luther wrote in #note-2:
> > This should be fixed, please review. I will a... - 04:32 PM bug #10576 (New): Set mimetype for json files (manifest) in ABCD import
- Follow up for #10568:
Currently the mimentype is not set for manifest.json files coming from ABCD import. We shoul... - 04:25 PM bug #10418 (Closed): Thumbnail loading takes very long in taxon search
- Thumbnail loading is much faster now in search.
- 10:39 AM bug #10418 (Resolved): Thumbnail loading takes very long in taxon search
- Now the thumbnail representation is used for the search display and only one call to get the media, so the loading is...
- 04:17 PM Revision 6c0483d6 (cdmlib): ref #10568: code deduplication
- 03:56 PM bug #9880 (Closed): Add active flag to user bulkeditor
- Fixed
- 02:25 PM bug #9880 (Resolved): Add active flag to user bulkeditor
- This is fixed, please review.
- 02:28 PM Revision 794b4e09 (cdmlib): ref #10557 add checkEmpty to Annotation
- 02:28 PM Revision b81b8fc9 (cdmlib): cleanup
- 02:25 PM Revision 2891f570 (taxeditor): ref #9880: add active flag to user bulkeditor
- 02:24 PM Revision 48327f4e (cdm-vaadin): ref #10557 remove empty annotations during save
- 02:12 PM Revision 9b7b2cd9 (cdmlib): ref #10563: add collector
- 02:10 PM Revision d6b40aa5 (cdm-vaadin): cleanup
- 01:17 PM Revision ae85fef3 (cdmlib): ref #10563: set specimen identifier at the end of the string
- 01:12 PM Revision d93b0b39 (cdmlib): ref #10568: code cleaning
- 11:48 AM feature request #10552: Change default anntotation type for Vaadin submitters to internal (PhycoBank)
- Please review.
- 11:45 AM feature request #10552 (Resolved): Change default anntotation type for Vaadin submitters to internal (PhycoBank)
- 11:36 AM feature request #10552: Change default anntotation type for Vaadin submitters to internal (PhycoBank)
- Wolf-Henning Kusber wrote in #note-6:
> For Vaadin curator the featurer request is perfectly solved.
>
> There is... - 11:38 AM Revision e5fcc239 (cdm-vaadin): ref #10552 change default editable annotation type for submitters to internal
- 11:04 AM bug #10572 (Closed): Specimens are added to a taxon of not selected classification
- New ticket created (#10575), so I close this ticket.
- 11:04 AM bug #10575 (New): Remaining issues on ABCD import
- copied from #10572
* When switching of "Reuse existing taxa" the taxon still seems to be mapped.
* For new taxa ... - 09:59 AM Revision 41975e03 (cdmlib): cleanup
- 09:59 AM Revision 75298784 (cdmlib): fix potential NPE in CondensedDistributionComposer
07/30/2024
- 10:03 PM feature request #10552 (Feedback): Change default anntotation type for Vaadin submitters to internal (PhycoBank)
- 09:54 PM bug #10572: Specimens are added to a taxon of not selected classification
- Please create new tickets for open issues that can not be fixed immediately.
The main functionality is as expected... - 09:53 PM bug #10572 (Feedback): Specimens are added to a taxon of not selected classification
- If not choosing any classification for the import but having "Reuse existing taxa when possible" checked but "Create ...
- 09:43 PM bug #10572: Specimens are added to a taxon of not selected classification
- The "Reuse existing taxa when possible" config param is not remembered for next import while other config params are ...
- 09:38 PM bug #10572: Specimens are added to a taxon of not selected classification
- The label "Newly created taxa" is misleading as often taxa are not created anew. We should rename to either simply "T...
- 09:35 PM bug #10572: Specimens are added to a taxon of not selected classification
- For new taxa the sec. reference is not taken from the parent. As this is usually the expected behavior it should at l...
- 09:29 PM bug #10572: Specimens are added to a taxon of not selected classification
- 
- 09:28 PM bug #10572: Specimens are added to a taxon of not selected classification
- When switching of "Reuse existing taxa" the taxon still seems to be mapped.
- 08:40 PM bug #10555: Sorting for doubtful taxa is not correct
- Works as expected.
- 08:40 PM bug #10555 (Closed): Sorting for doubtful taxa is not correct
- 07:13 PM bug #10559 (Closed): html formatting for sub names
- I did not test with an export but the code (especially the test) looks fine. So I guess this is fixed.
@WGB: pleas... - 07:05 PM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
- This is related to #10505 so maybe it can be handled together. If not please move to the next milestone.
- 07:02 PM bug #10505: Rename synonymy parameter highlite -> highlight
- There is a related ticket #8339 which suggests to simply remove the acceptedFor part of the URL eg in https://test.e-...
- 06:36 PM feature request #10574 (New): Refine name relationship filter in cdmlight (and maybe other imports)
- copied from #10562
A related issue might be that some names related only via a name relation should not be export... - 06:30 PM bug #10568: Manifest files should not be shown in dataportal
- The code seems to be ok on first glance. But there seems to be a lot of duplication of same functionality (checking f...
- 06:20 PM bug #10568 (Feedback): Manifest files should not be shown in dataportal
- Katja Luther wrote in #note-2:
> This should be fixed, please review. I will add an example to the integration refer... - 04:03 PM bug #10181 (In Progress): Search images do not show thumbnails
- Now thumbnails are now loaded for Althenia filiformis, but the second image is not correctly rotated. Dominik will ha...
- 01:26 PM Revision 2f1ae2ae (cdm-dataportal): ref #10418: don't get the media a second time
- 12:40 PM Revision e9faf99e (cdmlib): ref #10418: add new uri only if all parts match
07/26/2024
- 01:55 PM Revision 81a6844a (cdmlib): ref #10563: code cleaning and fix hashcode
- 12:08 PM Revision 86ed0d1d (cdmlib): ref #10559: remove whitespace
- 11:53 AM bug #10563 (In Progress): Specimen selection dialog should show a short description column
- As a first implementation a new column containing collectorsNumber + " - " + collectionCode + " - " + specimenIdenti...
- 11:53 AM Revision 5fe19a0e (taxeditor): ref #10563: add column with short label
- 11:52 AM Revision fc35a521 (cdmlib): ref #10563: add short label for specimen
- 11:39 AM Revision b404c372 (cdmlib): ref #10559: adapt test
- 11:13 AM Revision 9b7995ff (cdmlib): ref #10559: subname should be without author
- 10:19 AM Revision 8a71ea58 (cdmlib): minor
- 09:54 AM Revision b32d6e76 (cdmlib): ref #10559: adapt test to html tags for subname
07/25/2024
- 02:16 PM bug #10559 (Resolved): html formatting for sub names
- This should be fixed.
- 02:16 PM Revision 30165ca8 (cdmlib): ref #10559: add html tags to subname
- 02:10 PM bug #10572 (Resolved): Specimens are added to a taxon of not selected classification
- I tested with C. macedonica and C. graeca and all specimen are moved to the taxa already in centaurea classification ...
- 11:33 AM bug #10572 (In Progress): Specimens are added to a taxon of not selected classification
- Need some more time to test all configuration possibilities
- 10:40 AM bug #10572: Specimens are added to a taxon of not selected classification
- Konstantina Koutroumpa wrote in #note-2:
> What about Centaurea macedonica? All 15 specimens are determined as C. mac... - 09:48 AM bug #10572: Specimens are added to a taxon of not selected classification
- What about Centaurea macedonica? All 15 specimens are determined as C. macedonica but they were all imported in the F...
- 09:05 AM bug #10572 (Resolved): Specimens are added to a taxon of not selected classification
- The problem appeared if the determination of the specimen was a infraspecific taxon and the parent a taxon contained ...
- 02:00 PM Revision 703362e4 (cdmlib): ref #10572: some more adaptions, fix creation of new nodes - continue
- 01:20 PM bug #10573: type [icon] from the literature cited without multimedia item (PhycoBank, Portal)
- Yes, it ist is related to bug #10426. For PhycoBank this is a new bug, because the display was correct.
- 01:16 PM bug #10573: type [icon] from the literature cited without multimedia item (PhycoBank, Portal)
- maybe this is a duplicate for #10426
- 12:10 PM bug #10573: type [icon] from the literature cited without multimedia item (PhycoBank, Portal)
- The error occurs (25 July 2024 12:10) on the name-page for Mallomonopsis elliptica Matv.
URL: https://www.phycobank.... - 11:56 AM bug #10573 (New): type [icon] from the literature cited without multimedia item (PhycoBank, Portal)
- Example: http://phycobank.org/104821
If icons/figures are cited as types, PhycoBank (currently >99%) cites the image... - 11:16 AM Revision b6c5b93b (cdmlib): ref #10572: some more adaptions
- 09:03 AM Revision a1adb4c6 (cdmlib): ref #10572: fix handling of infraspecific taxa in abcd import
07/24/2024
- 12:34 PM Revision 4b796078 (cdmlib): ref #10418: fix ws if parameters missing
- 12:32 PM bug #10418: Thumbnail loading takes very long in taxon search
- Andreas Müller wrote in #note-17:
> > Here the problem was, that the images weren't available anymore. I adapted the... - 09:45 AM Revision 0689d9ab (cdm-dataportal): fix not shown image thumbnails
07/23/2024
- 09:39 AM Revision f81e36c3 (cdm-dataportal): revert index change
- 09:10 AM Revision 8679af95 (cdm-dataportal): adapt tests to adapted images
07/22/2024
- 05:07 PM bug #10572 (Closed): Specimens are added to a taxon of not selected classification
- An via ABCD imported specimen sometimes added to a taxon belonging to another classification than the selected one.
... - 04:59 PM Revision c3e1c70d (cdmlib): ref #10568: fix NPE
- 04:15 PM bug #10549 (Discussed): Move exsiccatum to field unit
- AM:
in one of the last user meeting we discussed that the exsiccatum information in type designation formatting sho... - 02:27 PM discussion #10403: Should syn. sec. be part of the homotypical group instead of single synonym?
- WGB + NaK:
Hallo,
ich hatte mir folgendes überlegt, zu schreiben, Fragen zu Deinem Ausgabevorschlag unten in rot:
=... - 01:58 PM bug #10568 (Resolved): Manifest files should not be shown in dataportal
- This should be fixed, please review. I will add an example to the integration reference DB, the example is Centaurea ...
- 01:57 PM Revision 822b4438 (cdmlib): ref #10568: filter for mimetype
- 01:54 PM Revision 3bf7d4f4 (cdmlib): ref #10568: add mimetype for json files
- 01:22 PM Revision 713bc024 (cdmlib): ref #10568: filter media with json at the end of uri (manifest files)
07/21/2024
- 04:16 PM feature request #3369 (Rejected): Lucene search factory or builder implemented
- There is no such field in eu.etaxonomy.cdm.config.Configuration anymore and also not elsewhere in the code. Also it d...
- 04:07 PM feature request #10069 (In Progress): Upgrade hibernate search and lucene to hs6+ and lucene 8+
07/19/2024
- 11:01 AM bug #10567: Fix copyright sign for all copyright informations
- It looks good to me too.
- 10:35 AM bug #10567 (Closed): Fix copyright sign for all copyright informations
- To me it looks correct now. Konstantina, maybe you also want to have a look? The link to the adapted image(s) is here...
- 08:45 AM bug #10567: Fix copyright sign for all copyright informations
- Andreas Müller wrote in #note-4:
> Do you have an example image for reviewing?
On test cichorieae I added for the... - 10:29 AM Revision 94cc88ce (cdm-vaadin): ref #10505 adapt highlite->highlight in vaadin (cont.)
- 10:28 AM bug #10505 (Closed): Rename synonymy parameter highlite -> highlight
- Upps, sorry, for some reason my workspace was not fully up-to-date.
But at least, this way I found some more appeara... - 10:23 AM bug #10505: Rename synonymy parameter highlite -> highlight
- Andreas Müller wrote in #note-14:
> Katja Luther wrote in #note-13:
> > Andreas Müller wrote in #note-12:
> > > In...
07/18/2024
- 07:52 PM Revision 743e7691 (cdmlib): cleanup
- 06:38 PM bug #10567: Fix copyright sign for all copyright informations
- Do you have an example image for reviewing?
- 04:37 PM bug #10567 (Resolved): Fix copyright sign for all copyright informations
- This should be fixed.
- 04:34 PM Revision 4bdb8102 (cdmlib): ref #10567: fix copyright handling
- 02:47 PM Revision 89d2b1ab (cdmlib): cleanup
- 02:46 PM Revision bd2ee0c9 (cdmlib): fix typo (standart->standard)
- 12:40 PM bug #10571 (New): Improve character data in details page
- Currently the details page for specimen shows the character data in a table which looks ok as long as the labels and ...
- 12:30 PM bug #10570 (New): Fix deduplication of authors in ABCD import
- After importing specimen via ABCD import, the database is flooded with duplicated authors. The ABCD import need to de...
- 12:30 PM bug #10505: Rename synonymy parameter highlite -> highlight
- Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-12:
> > In Cichorieae_NamePageTest the word highlit... - 11:18 AM bug #10505: Rename synonymy parameter highlite -> highlight
- Andreas Müller wrote in #note-12:
> In Cichorieae_NamePageTest the word highlite is still used 2x as it is used as p... - 10:53 AM bug #10505: Rename synonymy parameter highlite -> highlight
- In Cichorieae_NamePageTest the word highlite is still used 2x as it is used as php-class name. Can you please adapt t...
- 12:28 PM bug #10569 (New): Improvements for point maps
- There are two requirements for point maps:
1. Different symbols or colors of the symbol for co-ordinates that do n... - 11:31 AM bug #10418: Thumbnail loading takes very long in taxon search
- Andreas Müller wrote in #note-18:
> Katja Luther wrote in #note-15:
> > The algorithm to get the best matching repres... - 10:38 AM bug #10418: Thumbnail loading takes very long in taxon search
- Katja Luther wrote in #note-15:
> The algorithm to get the best matching representation of a file seems to be not de... - 10:37 AM bug #10418: Thumbnail loading takes very long in taxon search
- > Here the problem was, that the images weren't available anymore. I adapted the uris and now the search is much fast...
- 10:47 AM Revision c0da2e91 (cdm-vaadin): ref #10505 adapt highlite->highlight in vaadin
- 10:46 AM Revision cbb14b09 (cdmlib): cleanup
- 10:46 AM Revision 3da79d69 (cdmlib): ref #10505 adapt highlite->highlight in WfoBackboneExport
07/17/2024
- 11:06 PM Revision dc4d5024 (cdmlib): cleanup
- 10:29 PM bug #10566: Implement a webservice for checking new scans for existing specimen
- Why should this be a webservice
- 05:28 PM Revision cba43f73 (cdm-dataportal): fix link handling
- 05:20 PM Revision 63a0093f (cdmlib): ref #10525: Normalized output score
- 03:26 PM bug #10559: html formatting for sub names
- I guess sub names are nameUsedInSource for sec references
- 12:13 AM Revision 896535f3 (cdmlib): cleanup
07/16/2024
- 06:21 PM Revision 42606af6 (cdmlib): reenable OaiPmhViewTest
- 03:42 PM bug #10568 (Closed): Manifest files should not be shown in dataportal
- The manifest files coming with the import of specimen, but should not be shown in dataportal.
We decided that it m... - 02:34 PM bug #10567 (Closed): Fix copyright sign for all copyright informations
- The copyright sign is only shown, if the copyright information comes from the cdm db, but should be shown also for th...
- 02:17 PM bug #10566 (New): Implement a webservice for checking new scans for existing specimen
- If already imported specimens get new herbarium scans we need funtionality to call a webservice getting the informati...
- 02:13 PM bug #10565 (New): Refresh after deleting media
- After deleting a media from a taxon, the media view is not updated and the deleted media is still shown also after save.
- 02:12 PM bug #10564 (New): Move media to another taxon
- Currently the move operation is available only for factual data but not for media. We need this functionality also fo...
- 02:07 PM bug #10563 (Closed): Specimen selection dialog should show a short description column
- In the specimen selection dialog of the matrix currently the titlecache is used as identification column, but sometim...
- 10:09 AM Revision 12f33203 (cdmlib): ref #10525: corrected decimal format in tests
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