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From 07/27/2019 to 08/25/2019

Today

01:39 PM Revision 7e398530 (cdmlib-apps): ref #8479 fix duplicate source repo creation
Andreas Müller
01:38 PM Revision 712e980f (cdmlib-apps): cleanup
Andreas Müller
01:37 PM Revision e3159da6 (cdmlib-apps): ref #8479 manual last commit for FauEu cdm2cdm import
Andreas Müller
01:35 PM Revision b71e7a9e (cdmlib): ref #8479 allow manual last commit for TaxonNodeOutStreamPartitioner
Andreas Müller

08/23/2019

12:44 AM Revision 42134444 (cdmlib): allow TaxonNodeOutStreamPartitioner to be readOnly = false and use in...
Andreas Müller
12:43 AM Revision 774b85df (cdmlib): cleanup
Andreas Müller
11:56 PM Revision e899bbdf (taxeditor): adapt rollback to new name
Andreas Müller
11:55 PM Revision 80b81212 (cdmlib): remove setRollbackOnly to test if this causes exception in TaxEditor ...
Andreas Müller
11:54 PM Revision 29421c03 (cdmlib): rename rollback method
Andreas Müller
11:53 PM Revision 063973ca (cdmlib): cleanup
Andreas Müller
11:44 PM Revision 8da3d0db (taxeditor): fix compile error due to new rollback method
Andreas Müller
11:10 PM Revision def8dda3 (cdmlib-apps): cleanup TaxonExcelCaryophyllalesActivator
Andreas Müller
11:10 PM Revision 5815f954 (cdmlib-apps): ref #8479 FauEu Cdm2Cdm import more or less running but still slow
Andreas Müller
11:09 PM Revision 9718c259 (cdmlib-apps): minor
Andreas Müller
11:07 PM Revision 52b594a2 (cdmlib): add rollback to ICdmRepository and use in TaxonNodeOutStreamPartitioner
Andreas Müller
11:06 PM Revision d0390c50 (cdmlib): cleanup
Andreas Müller
06:20 PM Revision 48a40f35 (taxeditor): ref #8475 Use feature selection dialog in feature state wizard
Patrick Plitzner
04:39 PM Revision 26d39860 (cdmlib): cleanup
Andreas Müller
04:12 PM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > In this case we do not need an "empty" choice for the dropdowns...
Andreas Müller
02:59 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
Andreas Müller wrote:
> In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs...
Patrick Plitzner
10:07 AM feature request #8475: Adapt applicable state detail view elements to FeatureState
In general this ticket can be closed as it works as expected. Andreas Müller
10:06 AM feature request #8475: Adapt applicable state detail view elements to FeatureState
I wonder if we could reduce the availability of "InapplicableIf" and "OnlyApplicableIF" to term nodes of term type "... Andreas Müller
10:02 AM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs to have both, feature an... Andreas Müller
04:01 PM feature request #8486: Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
Can you add the changes to the ticket or is this not yet pushed? Andreas Müller
04:00 PM feature request #8486 (Resolved): Indicating doubtful state in navigator and add set-doubtful to ...
I preliminary give this to me to not forgot reviewing the next function. Disabling already is a good solution though ... Andreas Müller
09:54 AM feature request #8486 (Resolved): Indicating doubtful state in navigator and add set-doubtful to ...
Indicate the doubtful state in the taxon navigator somehow. E.g. by symbol "?" that we normally use for doubtful info... Katja Luther
03:49 PM Revision 11f52a90 (taxeditor): ref #8475 Remove not needed super method
Patrick Plitzner
03:34 PM feature request #8282: Implement placementDoubtful in TaxEditor
the setDoubtful menu item is now implemented for the navigator, but it was not possible to set the menu to invisible ... Katja Luther
01:45 PM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
Andreas Müller
12:24 PM feature request #8282: Implement placementDoubtful in TaxEditor
ok Andreas Müller
11:37 AM feature request #8282: Implement placementDoubtful in TaxEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > Also we should add the doubtful flag to the "Set flags" method in...
Katja Luther
11:35 AM feature request #8282: Implement placementDoubtful in TaxEditor
Katja Luther wrote:
> the checkbox is moved below the publish checkbox.
works as expected. Ticket can be closed o...
Andreas Müller
11:34 AM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
Andreas Müller wrote:
> Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right ...
Andreas Müller
09:52 AM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
the checkbox is moved below the publish checkbox. Katja Luther
09:51 AM feature request #8282: Implement placementDoubtful in TaxEditor
Andreas Müller wrote:
> The new field should be close to the taxon node information as it is from taxon node. Curren...
Katja Luther
03:29 PM Revision e9eec17d (taxeditor): Restructure ui.combo package
Patrick Plitzner
03:25 PM Revision 43ed2498 (taxeditor): ref #8282: add setDoubtful to setFlag menu in navigator
Katja Luther
03:20 PM Revision d3ca3e94 (taxeditor): ref #8479 fix removeTaxonAgentRelation in TaxEditor
Andreas Müller
03:16 PM bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.in...
The more sophisticated way is to adapt the underlying method to return an EnumSet, not an ordinary Set. With EnumSet ... Andreas Müller
01:12 PM bug #8482 (Feedback): java.lang.IllegalArgumentException: Collection is empty in DescriptionType....
The problems obviously is fixed and the implementation looks good. Why did you comment the commit with "workaround"? ... Andreas Kohlbecker
03:11 PM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
Andreas Müller wrote:
> Generally it works and can be closed.
>
> Open issue (new ticket?) is that Characters can...
Andreas Müller
12:06 PM feature request #8235 (Closed): Create separate menu for term tree editors for each term tree type
Adjusted the context menu entries. Closing ticket. Patrick Plitzner
09:50 AM feature request #8235: Create separate menu for term tree editors for each term tree type
Generally it works and can be closed.
Open issue (new ticket?) is that Characters can not be added to Featuretrees...
Andreas Müller
09:49 AM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
Andreas Müller wrote:
> "New" and "Delete" is enough, we do not need "... Term Tree"
This seems not yet implement...
Andreas Müller
02:57 PM Revision 570b874c (taxeditor): ref #8475 Only enable details view for feature and character term ...
Patrick Plitzner
02:51 PM Revision b3fbf38e (cdmlib): ref #8180 ... and again try to fix the test data
Andreas Müller
02:37 PM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, mis...
Andreas Müller wrote:
> Andreas Müller wrote:
> > Hybrids are not a set of independent taxa but more a filter on ea...
Katja Luther
11:38 AM feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, mis...
Andreas Müller wrote:
> Hybrids are not a set of independent taxa but more a filter on each group. So we should mayb...
Andreas Müller
09:44 AM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, mis...
moving synonyms and hybrids is done. Katja Luther
09:42 AM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplication...
Andreas Müller wrote:
> "Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't kn...
Katja Luther
02:36 PM Revision 0c676821 (taxeditor): ref #8447: disable finish if nothing is selected and hybrids disab...
Katja Luther
02:35 PM Revision 0a788123 (cdmlib): ref #8180 ... and update test data in other projects
Andreas Müller
02:25 PM Revision 03335762 (cdmlib): ref #8180 fix incorrect UUID in test data
Andreas Müller
02:08 PM Revision 57ab1b79 (cdmlib): ref #7600 add explict adders for adder and remover methods to EntityC...
Andreas Müller
02:08 PM Revision b781b5d5 (cdmlib): minor
Andreas Müller
02:08 PM Revision ed29b851 (cdmlib): ref #8479 make TaxonNode.addAgentRelation public and adapt remove met...
Andreas Müller
02:08 PM Revision 8b10ca03 (cdmlib): adapt CdmLightClassificationExport to hasXXX methods
Andreas Müller
02:08 PM Revision 749e8fb4 (cdmlib): ref #8180 Add vocabulary to test data
Andreas Müller
01:06 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermT...
my implementation now is generic.
> Also it might be nice to have a little test that it works. Have you tested in ...
Andreas Kohlbecker
10:28 AM task #8437 (Feedback): ITermTreeService provides a list method which supports filtering by TermT...
Andreas Kohlbecker wrote:
> Agreed ... and implemented in the way you pointed out.
The current implementation is ...
Andreas Müller
10:21 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
To me it looks like commit 1a5b2194 is not related to *this* ticket. Can you please check? Andreas Müller
12:59 PM Revision acdfa184 (cdmlib): ref #8437 using TermType.getGeneralizationOf() to expand the termType...
Andreas Kohlbecker
12:44 PM Revision 6d8c9ff0 (cdmlib): add doubtful flag to TaxonNodeDto
Katja Luther
12:30 PM Revision aa312f10 (taxeditor): ref #8475 Enhance FeatureStateWizard
- Pre-select single parent feature if exists
- filter out features without supported categorical states
Patrick Plitzner
12:07 PM task #8406 (Closed): specimens and occurrence code cleaning and harmonization
dead code removed.
I think we can close this issue now since all open tasks have been copied to other tickets.
Andreas Kohlbecker
09:04 AM task #8406: specimens and occurrence code cleaning and harmonization
Andreas Kohlbecker wrote:
> thank you for fixing this.
>
> there are two commented code parts in this method:
> ...
Katja Luther
12:05 PM Revision c1639218 (cdm-dataportal): ref #8406 removing commented dead code
Andreas Kohlbecker
12:04 PM Revision 38f0da6e (taxeditor): ref #8235 adjust context menu items
Patrick Plitzner
12:04 PM Revision 0d40526c (taxeditor): remove debug message
Patrick Plitzner
11:21 AM Revision 47ca6691 (cdmlib): cleanup
Andreas Müller
11:18 AM Revision 2c2b731a (cdmlib): fix clone method for User
Andreas Müller
11:17 AM Revision b0a48ddf (cdmlib): ref #8180 Add Presence state vocabulary to default terms
Andreas Müller
11:08 AM Revision 04eabef3 (cdmlib): ref #8479 add hasXXX methods to TaxonNodeFilter
Andreas Müller
11:07 AM Revision e68bc8fa (cdmlib): ref #8479 make TaxonNodeOutStreamPartitioner read only by default.
Andreas Müller
10:34 AM feature request #7450 (Closed): Allow setPublish for subtree to include misapplied names and pro ...
Moved better reporting to new ticket #8487 and close *this* ticket. Andreas Müller
10:33 AM feature request #8487 (New): Report results of set publish
It should include numbers per each group (taxa, synonyms, MAN, ...)
Also those MAN, ppSyns, shared taxa, which wer...
Andreas Müller
10:09 AM bug #8481 (Rejected): NPE when opening feature tree
I agree. Had a look to the data and for some reason the term with the given id really doesn't exist anymore. Don't kn... Andreas Müller
09:55 AM feature request #8470: Handle username constraints in user and group editing
I will implement this for the next release. Katja Luther
09:51 AM Revision b850c728 (taxeditor): ref #8282: move doubtful checkbox below publish checkbox
Katja Luther
09:50 AM Revision aee8ed69 (taxeditor): ref #8447: move hybrids and synonyms
Katja Luther
09:40 AM Revision 245bd5bc (taxeditor): ref #8447: only misapplied names or pro parte syn should work as well
Katja Luther
09:31 AM Revision 962e47b4 (taxeditor): ref #3472: adapt labels for operation
Katja Luther
09:31 AM feature request #3472 (Closed): Update name in source data when changing an accepted taxon into a...
the new ticket is #8478 and the labels are adapted. Katja Luther

08/22/2019

04:10 PM Revision c2b34f0b (taxeditor): Do not show admin menu when not logged in
Patrick Plitzner
04:10 PM Revision a9abb9b0 (taxeditor): Fix "General" missing menu items
Patrick Plitzner
12:05 PM Revision 0c64a24d (taxeditor): Hide terms menu when not connected
Patrick Plitzner
11:34 AM Revision 7f9d6ac4 (cdm-vaadin): removing vaading testbench test
Andreas Kohlbecker
11:33 AM Revision c4ce17b3 (cdm-vaadin): removing runtime artifact
Andreas Kohlbecker

08/21/2019

04:12 PM bug #8481 (Feedback): NPE when opening feature tree
Looking at the stacktrace this seem like corrupted data as the exception happen during TermRelationBase.getTerm().
...
Patrick Plitzner
04:10 PM feature request #8485 (Closed): Add column groups to character matrix
Does not have to be reviewed because still experimental Patrick Plitzner
04:09 PM feature request #8485 (Resolved): Add column groups to character matrix
Applied in changeset commit:taxeditor|c264cd9262db5bb03b83d94858c559cc985b8bc2. Patrick Plitzner
03:09 PM feature request #8485 (Closed): Add column groups to character matrix
Groups should reflect the hierarchy of the character tree. Patrick Plitzner
04:10 PM feature request #8235 (Resolved): Create separate menu for term tree editors for each term tree type
Patrick Plitzner
04:09 PM Revision 422fbab5 (taxeditor): ref #8235 Fix term tree sub menu and context menu
Patrick Plitzner
04:09 PM Revision c9332db4 (taxeditor): Move util method to StoreUtil
Patrick Plitzner
04:09 PM Revision c264cd92 (taxeditor): fix #8485 Add column groups to character matrix
Patrick Plitzner
12:29 PM bug #8484 (New): Exception is swallowed in taxon navigator
In a corrupt database with taxon nodes without classification I got the following exception in the log file.
However...
Andreas Müller
11:49 AM task #8483 (New): Return EnumSets in EnumeratedTermVoc.getGeneralizationOf and similar methods
This may prevent from errors like in #8482 Andreas Müller
11:46 AM bug #8482 (Resolved): java.lang.IllegalArgumentException: Collection is empty in DescriptionType....
Applied in changeset commit:cdmlib|244c62c6bee1863dfe79d71e0ecae7bdeb4d06b5. Andreas Müller
11:18 AM bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.in...
Can be reproduced by:
http://int.e-taxonomy.eu/cdmserver/integration_palmae/portal/taxon/ce870eca-0422-4a3c-b849-0...
Andreas Kohlbecker
11:46 AM Revision 244c62c6 (cdmlib): fix #8482 workaround fix for DescriptionType includes error
Andreas Müller
11:46 AM Revision 59b19202 (cdmlib): minor
Andreas Müller
11:09 AM bug #8385 (Resolved): Open issues in DB preferences
please review Katja Luther
09:51 AM Revision 4a3a3258 (taxeditor): add higher taxon to search options for specimen - taxeditor
Katja Luther
09:49 AM Revision 319a163b (cdmlib): add higher Taxon search option to specimen search
Katja Luther
09:17 AM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from s...
Hallo Andreas,

danke für deine Einschätzung. Da du mich in meiner Auffassung bestätigst, werde ich das "is accept...
Andreas Kohlbecker
09:17 AM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from s...
Hallo Andreas,

das war mir völlig unbekannt, dass wir sowas überhaupt haben/hatten. Daher hatte ich das ganze...
Andreas Kohlbecker

08/20/2019

12:52 PM Revision 7dc115d1 (taxeditor): adapt display of multiple status in distr editor to preference value
Katja Luther
11:51 AM bug #8481: NPE when opening feature tree
I get the same exception when trying to add an InapplicableIf to "Test Feature Tree" -> Citation -> Leaf color -> Ana... Andreas Müller
11:47 AM bug #8481 (Rejected): NPE when opening feature tree
When opening feature tree "Testdasdfa" on rem_conf_am I got
~~~
login : admin
editor version : 5.9.0.20190819225...
Andreas Müller
11:45 AM feature request #8235: Create separate menu for term tree editors for each term tree type
"New" and "Delete" is enough, we do not need "... Term Tree" Andreas Müller
11:43 AM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
Feature Tree Editors still have "New Structure Tree" and "New Property Tree" submenu.
Each Term type should have its...
Andreas Müller
11:04 AM Revision 49078739 (taxeditor): minor in l10n
Katja Luther

08/19/2019

04:58 PM bug #8465 (Closed): Term nodes order in term trees is ignored in term tree editor
I would rather close this tickets because it was created only to handle the bug. All other issues will be adressed in... Patrick Plitzner
04:55 PM Revision 3250b022 (taxeditor): extract string constant
Patrick Plitzner
04:55 PM feature request #8235 (Resolved): Create separate menu for term tree editors for each term tree type
Applied in changeset commit:taxeditor|362b3a0c58e4b2b8620477ce38a80e2a3553bd36. Patrick Plitzner
04:54 PM Revision 362b3a0c (taxeditor): fix #8235 Create separate menu for term tree editors for each type
Patrick Plitzner
04:48 PM Revision 128dc8b1 (cdmlib-apps): syntax for collective species uuid and some other PESITransforme...
Andreas Müller
04:47 PM Revision bb184a5d (cdmlib): syntax for collective species uuid
Andreas Müller
04:22 PM Revision a85f12b2 (cdmlib): minor
Andreas Müller
04:21 PM Revision 69f5b141 (cdmlib): some minor adaptations to CdmLightExport and CsvNameExport
Andreas Müller
04:21 PM Revision e1aea500 (cdmlib): minor
Andreas Müller
04:15 PM feature request #8480 (Closed): Use DescriptionTypes for matrix descriptions
Patrick Plitzner
04:14 PM feature request #8480 (Resolved): Use DescriptionTypes for matrix descriptions
Applied in changeset commit:cdmlib|0b616910ec8af247ee13843c5058b22ac24efff0. Patrick Plitzner
04:11 PM feature request #8480 (Closed): Use DescriptionTypes for matrix descriptions
Patrick Plitzner
04:15 PM feature request #7957 (Closed): Add types for taxon description (as EnumSet)
Adapted descriptive data set service to use DescriptionType. Tried aggregation and tested display in matrix editor. A... Patrick Plitzner
04:15 PM Revision 491e4eea (cdmlib-apps): ref #8404 add steplist to BgbmInstancesUpdater code
Andreas Müller
04:13 PM Revision ef8f40dd (taxeditor): fix #8480 Use DescriptionTypes for matrix descriptions
Patrick Plitzner
04:13 PM Revision 0b616910 (cdmlib): fix #8480 Use DescriptionTypes in descriptive data set service
Patrick Plitzner
04:12 PM Revision f2f47cbd (cdmlib-apps): ref #8479 First version of cdm2cdm import for FauEu (classes cre...
Andreas Müller
04:11 PM task #8479 (New): Cdm-2-Cdm import for FauEu
Andreas Müller
04:09 PM Revision 9d685c8f (cdmlib-apps): ref 5448 latest changes to Geaessplanzenimport Excel
Andreas Müller
04:06 PM Revision c525794f (cdmlib-apps): fix to BerlinModelAreaImport. Not sure why this is needed only now
Andreas Müller
04:06 PM Revision 220dce9c (cdmlib-apps): last adaptation to E+M import (not needed anymore)
Andreas Müller
04:05 PM Revision ff763abe (cdmlib-apps): latest version of GreeceImageActivator
Andreas Müller
04:04 PM Revision bff0daf9 (cdmlib-apps): fix some compile errors in ERMS and FauEu
Andreas Müller
04:03 PM Revision 07de96ff (cdmlib-apps): minor
Andreas Müller
03:21 PM feature request #8475: Adapt applicable state detail view elements to FeatureState
Added applicable detail elements to TermNode details view. Available features are filtered to only contain parent fea... Patrick Plitzner
03:19 PM feature request #8475 (Resolved): Adapt applicable state detail view elements to FeatureState
Patrick Plitzner
03:18 PM Revision e9af789c (taxeditor): ref #8475 Filter available feature to only parent features
Patrick Plitzner
02:37 PM bug #8417: LazyInitializationException in TermDTO for media
not important for this release -> move to 5.10 Patrick Plitzner
02:33 PM feature request #8478 (New): Follow up ticket for update empty name in source handling in TaxEditor
We need a final implementation with a new wizard including the question if the name in sources should be taken from t... Katja Luther
02:30 PM Revision 719ac7ab (taxeditor): ref #8475 Add applicability detail element to character details view
Patrick Plitzner
02:27 PM Revision dc1780ec (taxeditor): ref #8385: fix nomenclatural code preference page - continue
Katja Luther
01:27 PM feature request #8304: Name page redirects to according taxon depending on query parameter
Hi Andreas, I think we have discussed this issue sometime at phone. Do you remember the results? Are they somewhere i... Andreas Müller
01:06 PM Revision c9bb625e (taxeditor): ref #8385: fix nomenclatural code preference page
Katja Luther
01:06 PM Revision dea4cffc (taxeditor): ref #8385: add allowOverride to AbcdProvider PreferencePage
Katja Luther
12:33 PM Revision de4de718 (cdmlib-apps): ref #6794 , ref #7099 adapt E+M activator to terms package stru...
Andreas Müller
10:54 AM Revision 22be3a02 (taxeditor): Update nebula composite table
Patrick Plitzner
10:16 AM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
Ok, in generall this probably makes sense. Maybe I just wasn't used to it yet.
However, if this is the expected beha...
Andreas Müller
09:40 AM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
Andreas Müller wrote:
> Currently both methods do end in an unexpected state. After running the operation the old ta...
Katja Luther
09:53 AM Revision f9af366e (taxeditor): ref #8385: smaller changes in preferences
Katja Luther
09:51 AM Revision 8437c047 (cdmlib): add preference predicates
Katja Luther
09:42 AM Revision 041937b4 (taxeditor): ref #8385: fix problems in preferences
Katja Luther

08/17/2019

02:10 AM Revision 54627755 (cdmlib-apps): remove RoteListeDbTaxonImportValidator
Andreas Müller
02:10 AM Revision 165e1209 (cdmlib-apps): ref #6794 , ref #7099 adapt app-import, pesi, eflora to modelch...
Andreas Müller

08/16/2019

01:02 AM Revision b5de83c2 (cdmlib): ref #8432 adapt javadoc
Andreas Müller
12:57 AM Revision 08f5d256 (cdmlib): ref #8432 adapt TermTreeDaoImpl.load such that default feature tree i...
Andreas Müller
12:54 AM Revision 55e16d38 (cdmlib): minor
Andreas Müller
10:36 PM bug #8385: Open issues in DB preferences
~~Restore button does not yet work for Distribution Editor status and area selection preferences~~
this is fixed
Andreas Müller
10:33 PM bug #8385: Open issues in DB preferences
~~Distribution editor status selection: changes are not visible in Preferences view after reopening the preferences v... Andreas Müller
10:27 PM bug #8385: Open issues in DB preferences
~~name.nomenclaturalStatus can not be removed by Reset Default~~
this is fixed.
Andreas Müller
10:25 PM bug #8385: Open issues in DB preferences
~~some preferences are not deleted for NameDetailsView => deselect all and reopen preferences => 3 prefs stay selecte... Andreas Müller
10:21 PM bug #8385: Open issues in DB preferences
~~ABCD import is now implemented on both sides, but "allow override" does not yet exist for "ABCD import provider"~~
...
Andreas Müller
10:19 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> When opening Peferences - Distribution Editor for the first time the drop downs for some fie...
Andreas Müller
10:12 PM bug #8385: Open issues in DB preferences
>Name details view can not be set to "default" (always chooses enabled after reopening)
~~Now it always sets it ba...
Andreas Müller
10:09 PM bug #8385 (Feedback): Open issues in DB preferences
~~When opening Peferences - Distribution Editor for the first time the drop downs for some fields were completely emp... Andreas Müller
09:55 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
Andreas Müller wrote:
> Please open a new ticket for the final implementation with a new wizard including the questi...
Andreas Müller
09:51 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
The labels of the 2 menus should be equal except for the addition about the Name in Source. Is there a reason why you... Andreas Müller
09:44 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
Please open a new ticket for the final implementation with a new wizard including the question if the name in sources... Andreas Müller
09:38 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
The method with setting the name should be moved down in menu Andreas Müller
09:37 PM feature request #3472 (Feedback): Update name in source data when changing an accepted taxon into...
Currently both methods do end in an unexpected state. After running the operation the old taxon is dirty (and unsaved... Andreas Müller
09:40 AM feature request #3472 (Resolved): Update name in source data when changing an accepted taxon into...
this is implemented now.
The setting of the name in source is configurable, but in editor a new wizard would be ne...
Katja Luther
09:24 PM bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
I close this ticket as there is a follow up ticket. Andreas Müller
09:22 PM feature request #8299 (Feedback): add typification column to scientific name and homotypical grou...
Testing is time consuming for me. Please ask Walter if it is as expected. Andreas Müller
09:20 PM feature request #8334 (Closed): Move sources for type designations to details view
Andreas Müller
09:17 PM bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
Hmm, now the warning is also shown if the misapplication is referenced e.g. by an identification key which is not nec... Andreas Müller
09:05 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplication...
"Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't know if it is maybe better ... Andreas Müller
09:01 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplication...
I think we may move synonyms below taxa as they are the second biggest group. Misapplications and pro parte synonyms ... Andreas Müller
08:59 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplication...
Hybrids are not a set of independent taxa but more a filter on each group. So we should maybe move it down (directly ... Andreas Müller
08:57 PM feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, mis...
If only Misapplications and/or pro parte synonyms are selected the finish button is not enabled but should (at least ... Andreas Müller
08:43 PM feature request #8282: Implement placementDoubtful in TaxEditor
Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right click menu. Andreas Müller
12:24 PM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
The new field should be close to the taxon node information as it is from taxon node. Currently it is in the middle o... Andreas Müller
08:03 PM Revision 96b27743 (cdmlib): ref #7957 add javadoc to description types
Andreas Müller
07:00 PM Revision 7e477034 (cdmlib): ref #8441 add tests for FeatureState loading and move some test data ...
Andreas Müller
06:27 PM Revision 73ef4c0b (cdmlib): ref #8441 fix mapping for FeatureState
Andreas Müller
05:29 PM Revision cf3d9f76 (taxeditor): ref #8475 Create FeatureState in wizard dialog
Patrick Plitzner
04:33 PM Revision b02697a5 (cdmlib): minor
Andreas Müller
04:32 PM Revision 887eb4d0 (cdmlib): move term node DAOs to term package
Andreas Müller
03:35 PM Revision c34a11ca (taxeditor): ref #7957 adapt tests to DescriptionBase.types not null
Andreas Müller
03:33 PM Revision 06a2de9b (taxeditor): cleanup
Andreas Müller
03:22 PM feature request #8477 (New): Implement support for TermCollection.isFlat in TaxEditor
Since #6794 it is possible to distinguish term collections which include duplicates (e.g. structure trees which inclu... Andreas Müller
03:09 PM feature request #8476 (New): Implement support for TermCollection.isFlat in TaxEditor
Often term collections are meant to be a flat list or set without hierarchical dependencies. For these collections th... Andreas Müller
03:09 PM Revision 593915d2 (taxeditor): ref #8475 First (unstable) implementation of FeatureState details
Patrick Plitzner
03:08 PM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
Patrick Plitzner
02:58 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
In general the ordering seems to work now. Andreas Müller
02:56 PM bug #8465 (Feedback): Term nodes order in term trees is ignored in term tree editor
As Term nodes should be not always ordered anymore (TermCollection.orderRelevant flag) we could implement this alread... Andreas Müller
02:45 PM feature request #8474 (New): Make TermCollection.orderRelevant usable for TermTrees

Dazu müsste es:
1. editierbar sein
2. Der TermTree müsste unterschiedlich sortiert angezeigt werden, je nach Zu...
Andreas Müller
01:22 PM Revision c1662123 (taxeditor): ref #8385: adapt preference keys to preference predicates
Katja Luther
01:22 PM bug #8473 (New): Migrate from GrantedAuthoritiesImpl to CdmAuthority and Role
First of all the handling of authorities needs to be migrated and tested to AuthorityBase (by AK). Once this is done ... Andreas Müller
01:14 PM bug #4884 (Closed): Update Reference_AUD.refType to allow NULL
I guess this works. Andreas Müller
12:49 PM Revision 94c6459b (taxeditor): fix search dialog default handling
Katja Luther
12:41 PM feature request #8472 (New): Transmission engine for distribution aggregation needs to be adapted...
Currently it uses marker type "Computed" to mark the descriptions.
... also needs update script for existing descr...
Andreas Müller
12:38 PM feature request #7957: Add types for taxon description (as EnumSet)
This has been implemented now as an EnumSet for better performance.
Please review.
Andreas Müller
10:38 AM feature request #7957 (Resolved): Add types for taxon description (as EnumSet)
Applied in changeset commit:cdmlib|1962891319edeb12380aa69994467f674a96ce96. Andreas Müller
12:35 PM feature request #8471 (New): Computed descriptions should be disabled in TaxEditor
Taxon descriptions being computed (DescriptionBase.types contains COMPUTED or AGGREGATED) should be disabled for edit... Andreas Müller
12:16 PM feature request #8398: Add nomenclatural code edition to ruleConsidered
As this was your (phycobank) requirement I give it to you for review. Andreas Müller
12:15 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
Maybe we can do this in 5.10 latest so it is close to the model change.
I think we should add it to configuration ...
Andreas Müller
12:14 PM Revision a60ccec4 (taxeditor): ref #8385: enable apply button when provider added or removed from...
Katja Luther
12:14 PM Revision 0ae3531b (taxeditor): minor
Katja Luther
12:14 PM Revision f9840e06 (taxeditor): ref #8385: correct preference handling for provider list
Katja Luther
12:12 PM feature request #8404 (Closed): Add update step list within updaters
Seems to work as expected and is very nice. Andreas Müller
12:11 PM feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
So I close this ticket. Andreas Müller
12:10 PM feature request #8454: Only allow certain patterns as username and groupname
This should be fixed. Who ever wants please review. I tested creating a new user and a group in TaxEditor. For both w... Andreas Müller
12:04 PM feature request #8470 (New): Handle username constraints in user and group editing
Since #8454 a regex exist for usernames and groupnames.
For new usernames and groups the TaxEditor should validat...
Andreas Müller
11:47 AM feature request #8441: Add FeatureState class
Please review.
Maybe there are issues with orphan removal handling.
Andreas Müller
11:45 AM feature request #8441 (Resolved): Add FeatureState class
This is implemented, old implementation still exists in parallel. Should be removed with next update script.
SDD I...
Andreas Müller
11:41 AM feature request #8469 (New): Open PolytomousKeyGenerator issues
* adapt dependency handling to new FeatureState handling, in general improve the handling of dependencies, maybe work... Andreas Müller
11:35 AM task #8468 (New): Remove old InapplicableIf tables
Andreas Müller
11:03 AM Revision 525deb12 (taxeditor): adapt test H2 to schema v5.8.2
Andreas Müller
11:02 AM Revision 34062138 (cdmlib): ref #7959 rename DescriptionState -> DescriptionType and fix bug for ...
Andreas Müller
10:48 AM Revision f922cb22 (cdmlib): adapt cached model to 5.8.2
Andreas Müller
10:43 AM Revision 7134ca41 (cdm-vaadin): adapt test H2 to schema v5.8.2
Andreas Müller
10:42 AM Revision f81da2cc (cdm-vaadin): minor
Andreas Müller
10:38 AM Revision eeafa6f5 (cdmlib): for the moment set TermCollection.orderRelevant default to true
Andreas Müller
10:36 AM Revision beb18173 (cdmlib): adapt TestModelUpdate to run for all 3 H2 DBs
Andreas Müller
10:34 AM Revision a0d6f613 (cdmlib): adapt test H2 to model changes v5.8.2
Andreas Müller
10:34 AM Revision 9276e073 (cdmlib): ref #7957 add not null to update script for DescriptionBase.types
Andreas Müller
10:15 AM Revision a3d196bc (taxeditor): fix test for swapAcceptedwithSynonym
Katja Luther
10:14 AM Revision 3ff169c5 (taxeditor): fix test for swapAcceptedwithSynonym
Katja Luther
10:10 AM Revision b1d5cef3 (cdmlib): Cleanup
Andreas Müller
10:10 AM Revision 20ffe9b7 (cdmlib): ref #7099 , ref #8464 some adaptions on constraints for CdmAuthority
Andreas Müller
10:10 AM Revision 19628913 (cdmlib): fix #7957 add types to DescriptionBase
Andreas Müller
10:10 AM Revision 49405267 (cdmlib): Use AccessType Field for Character class
Andreas Müller
10:10 AM Revision ec5f2748 (cdmlib): ref #8441 adapt testdata and SDDDocumentBuilder to FeatureState
Andreas Müller
10:10 AM Revision ddda469d (cdmlib): minor
Andreas Müller
10:10 AM Revision abe8cce6 (cdmlib): ref #8441 further implementation for FeatureState and inapplicableIf
Andreas Müller
10:10 AM Revision 4e36de56 (cdmlib): ref #8441 FeatureState classes added and TermNode adapted
Andreas Müller
10:00 AM Revision 73a78654 (cdmlib): ref #8467 add commented code
- un-comment when cloned descriptions can be added to taxon
descriptions as sources
Patrick Plitzner
09:37 AM Revision 682f52a4 (taxeditor): ref #3472: adapt editor to changes in methods moving descriptions
Katja Luther
09:01 AM Revision fe8fa9b2 (cdmlib): ref #3472: fix set name in source
Katja Luther

08/15/2019

04:09 PM feature request #7597 (Closed): Aggregate and persist descriptions on taxon level
Closing this feature. No review needed as this is still experimental. Follow up ticket #8467 Patrick Plitzner
04:08 PM feature request #8467 (New): Save a "snapshot" of the SpecimenDescriptions used for aggregation
When aggregating SpecimenDescriptions to a TaxonDescriptions the SDs used should be cloned and associated as sources ... Patrick Plitzner
03:57 PM feature request #8464: Make AuthorityBases unique
This seems to be more difficult then I thought.
In general hibernate allows the ,uniqueConstraints=@UniqueConstra...
Andreas Müller
02:59 PM feature request #8441 (In Progress): Add FeatureState class
Andreas Müller
02:21 PM bug #8465 (Resolved): Term nodes order in term trees is ignored in term tree editor
Applied in changeset commit:taxeditor|74a9e9d7da34b3e2d6a895a7b091364125c6f648. Patrick Plitzner
12:19 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
So, if the flag is switched on, the tree should be ordered by tree order, otherwise alphabetically (or by any other c... Andreas Müller
12:06 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
Note: The new TermCollection base class has a flag now called "orderRelevant". This should in future decide if the or... Andreas Müller
10:32 AM bug #8465 (Closed): Term nodes order in term trees is ignored in term tree editor
ich hatte gerade einen neuen Feature Term "Chemophenetics" für den Cichorieae Feature Tree geschaffen , den wollte ic... Patrick Plitzner
02:21 PM Revision 74a9e9d7 (taxeditor): fix #8465 Do not sort term nodes with term tree comparator
Patrick Plitzner
01:57 PM Revision 743a64ea (cdmlib): ref #3472: make setting of name in source configurable
Katja Luther
01:52 PM task #8466 (New): Delete FeatureTree tables
FeatureTree has been moved to TermCollection. The old tables have not yet been deleted to have the chance to find pos... Andreas Müller
12:39 PM feature request #8442: Add fields to handle external terms to DefinedTermBase or TermBase
Andreas Müller wrote:
> This should be fixed. Also added new field "importMethod" and extracted all data to an exter...
Patrick Plitzner
10:41 AM Revision 6c4f05ea (cdmlib): ref #3472: add nameInSource in makeTaxonNodeSynonym
Katja Luther
10:34 AM Revision d1d76c46 (cdmlib): ref #3472: swap Synonym and accTaxon should move all taxon informatio...
Katja Luther
10:24 AM Revision 56d0ef92 (cdmlib): add add unitGUID to abcd import
Katja Luther
10:22 AM Revision f5050d21 (cdmlib): update caches prgress monitor with name
Katja Luther
10:20 AM Revision af1131f2 (cdmlib): ref #8385: add method to get voc by uuid
Katja Luther
10:17 AM Revision 905236e8 (taxeditor): ref #8385: adapt strucutre of db prefs to local prefs
Katja Luther
09:50 AM Revision fddfd97b (taxeditor): missing l10n files
Katja Luther
09:39 AM Revision 0c8bd397 (taxeditor): ref #8447: add man and pp to setPublish configurator wizard
Katja Luther
09:39 AM Revision c03d27b9 (taxeditor): ref #8447: move shared taxa and disable if not needed
Katja Luther
09:39 AM Revision da38bb5e (taxeditor): multiline text fiedl for reference title
Katja Luther
09:15 AM feature request #8334 (Resolved): Move sources for type designations to details view
Patrick Plitzner

08/14/2019

11:45 AM feature request #7957 (In Progress): Add types for taxon description (as EnumSet)
Patrick Plitzner
11:04 AM Revision 9f84cafb (cdmlib): Adapt uniqueness and notNull for some authority parameters
Andreas Müller
10:59 AM bug #7099: Make CdmAuthority a persistable class
forgot to implement uniqueness. Moved to #8464 Andreas Müller
10:41 AM bug #7099 (Resolved): Make CdmAuthority a persistable class
This is implemented for now. Old GrantedAuthorities still exist and are in use but we could easily switch to new ones... Andreas Müller
10:56 AM feature request #8464 (New): Make AuthorityBases unique
The old GrantedAuthorityImpl.authority was unique and NotNull. This was forgotten to implement when implementing CdmA... Andreas Müller
10:51 AM feature request #8442 (Resolved): Add fields to handle external terms to DefinedTermBase or TermBase
This should be fixed. Also added new field "importMethod" and extracted all data to an external embeddable class "Ext... Andreas Müller
10:48 AM feature request #3972 (Closed): Strictly validate username to not null and not empty
This should be fixed by fixing #8454 Andreas Müller
10:47 AM feature request #8454 (Resolved): Only allow certain patterns as username and groupname
This should be solved now and seems to work. Still needs testing in TaxEditor and maybe other surroundings. Andreas Müller
10:45 AM bug #8429 (Resolved): Rename DeterminationEvent_Reference.setOfReferences_id
This is fixed now by renaming the parameter in model from setOfReferences to references.
Making it a set of sourc...
Andreas Müller
10:45 AM feature request #8463 (New): Make DeterminationEvent.references sources
Currently the link to Reference but they should link to Source. DeterminationEvent should probably become a Sourceabl... Andreas Müller

08/13/2019

05:38 PM Revision 69944d4b (cdmlib): update model cache for schema version 5.8.1
Andreas Müller
05:02 PM Revision d9054fe5 (taxeditor): adapt TaxEditor to Schema changes v5.8.1
Andreas Müller
04:46 PM Revision d742db9a (cdmlib): ref #7099 preliminary removing initialization of authorities to avoid...
Andreas Müller
04:24 PM Revision 8b58ece8 (cdm-vaadin): adapt Vaadin to model changes v5.8.1
Andreas Müller
03:16 PM Revision 0059f9df (taxeditor): adapt test H2 to schema v5.8.1
Andreas Müller
03:13 PM Revision cf816bf2 (cdmlib): adapt test H2 to schema v5.8.1
Andreas Müller
03:13 PM Revision 3f6ffa04 (cdmlib): adapt poms to correct handling of versions => move versions to parent...
Andreas Müller
03:13 PM Revision 8d58f4b9 (cdmlib): ref #8454 fix UserAndGroupServiceImplTest
Andreas Müller
03:13 PM Revision 9bee6bd5 (cdmlib): ref #8442 fix some jaxb annotations
Andreas Müller
03:13 PM Revision d7b78aa0 (cdmlib): ref #8442 add externallyManaged to UserDefined classes for matching a...
Andreas Müller
03:13 PM Revision c39b4bdb (cdmlib): minor
Andreas Müller
03:13 PM Revision 609086da (cdmlib): ref #8442 jaxb for externallyManaged
Andreas Müller
03:13 PM Revision 43f0e2a1 (cdmlib): ref #8442 , ref #8429 adapt test schemas to model changes
Andreas Müller
03:13 PM Revision dd017de5 (cdmlib): ref #8442 update script for externally managed, ref #8454 update scri...
Andreas Müller
03:13 PM Revision 040eb2b6 (cdmlib): cleanup
Andreas Müller
03:13 PM Revision 8de7077d (cdmlib): add IRuleConsidered
Andreas Müller
03:13 PM Revision 7fd108f2 (cdmlib): ref #8442 add ExternallyManagedImport
Andreas Müller
03:13 PM Revision 816fdaa0 (cdmlib): ref #8442 add externallyManaged to DefinedTermBase and TermVocabulary...
Andreas Müller
03:13 PM Revision 4f817727 (cdmlib): ref #8442 move AuthorityType to model.common
Andreas Müller
03:13 PM Revision 6c8124b2 (cdmlib): ref #7099 update script for CdmAuthority tables
Andreas Müller
03:13 PM Revision 7b733b2a (cdmlib): ref #8429 rename DeterminationEvent.setOfReferences to DeterminationE...
Andreas Müller
03:13 PM Revision fbe7ab55 (cdmlib): adapt model version number
Andreas Müller
03:13 PM Revision 83615ec3 (cdmlib): ref #7099 fix loading of EnumSet and add tests
Andreas Müller
03:13 PM Revision b6177938 (cdmlib): ref #7099 add CdmAuthority to User, remove CDM_VIEW from tests, cleanup
Andreas Müller
03:13 PM Revision 6183e939 (cdmlib): ref #7099 further updates to CdmAuthority for persistance + add Role ...
Andreas Müller
03:13 PM Revision 7fbe6eb3 (cdmlib): ref #7099 rename CdmPermissionClass to PermissionClass
Andreas Müller
03:13 PM Revision 55ad1a65 (cdmlib): ref #7099 adapt CdmAuthority class
Andreas Müller
03:13 PM Revision d5579203 (cdmlib): ref #7099 rename model.rights to model.permission
Andreas Müller
03:13 PM Revision 39a05e3b (cdmlib): ref #7099 move CRUD and Operation to model
Andreas Müller
03:13 PM Revision dbc1a185 (cdmlib): ref #7099 minor
Andreas Müller
03:13 PM Revision 0377d70f (cdmlib): ref #7099 move CdmPermissionClass to model
Andreas Müller
03:13 PM Revision 899b7d66 (cdmlib): ref #7099 move user, group and GrantedAuthorityImpl to new rights pac...
Andreas Müller
03:13 PM Revision 3ff6cdef (cdmlib): ref #8454 add regex to User.username and Group.name
Andreas Müller
03:13 PM Revision 0b091e82 (cdmlib): adapt SchemaUpdater_55_58 to new version
Andreas Müller
03:09 PM Revision 8586ad49 (cdm-vaadin): adapt test H2 to schema v5.8.1
Andreas Müller
12:02 PM bug #8462 (New): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkin...
Reported by Henning on 04.08.19 19:17
**Fehler in PhycoBank, 102010, Treptacantha ballesterosii**
Beim Specie...
Andreas Kohlbecker
11:48 AM feature request #8461 (New): Change term URI of TDWG Term to identifier in additivity ontology
This should be done in bulk with a script Patrick Plitzner
11:20 AM feature request #8135 (Closed): Implement verbatim type information in TaxEditor
closing ticket -> translation will be handled in #8459 Patrick Plitzner
11:07 AM feature request #8460 (New): Show examples in text field
Some text field have labels that are not intuitive if you are not familiar with the EDIT platform. Having some inform... Patrick Plitzner
11:01 AM feature request #8459 (New): i18n for taxeditor details view
Patrick Plitzner
09:17 AM Revision 53627082 (taxeditor): ref #7597 Re-load dataset descriptions after aggregation
- adapt to service layer change (use UUID as parameter) Patrick Plitzner
09:14 AM Revision 0339827e (taxeditor): ref #7597 Clear matrix descriptions before loading them
Patrick Plitzner
09:13 AM Revision 845c6b16 (cdmlib): ref #7597 Fix deletion of aggregated descriptions
Patrick Plitzner
09:12 AM Revision 7353eb10 (cdmlib): cleanup
Patrick Plitzner
09:12 AM Revision 8efb1fe4 (cdmlib): ref #7597 Use UUID for service call
Patrick Plitzner
08:40 AM Revision 7bba825c (taxeditor): ref #8334 Move sources in details view to bottom
Patrick Plitzner

08/12/2019

11:41 PM task #8458: document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
As this has been worked on recently we should do it soon. Andreas Müller
05:39 PM task #8458 (New): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection<FieldUnitDTO> fieldUnits, H... Andreas Kohlbecker
11:36 PM task #8456: FieldUnitDTO: remove newInstanceMethod
Passing this ticket to Katja or Patrick as I never worked on/with this class.
Note: syntax of the method name is a...
Andreas Müller
05:31 PM task #8456 (New): FieldUnitDTO: remove newInstanceMethod
copied from #8414
FieldUnitDTO providing a newInstance method. This has to be removed:
~~~
/**
* @pa...
Andreas Kohlbecker
06:20 PM Revision a083a070 (cdmlib): ref #7597 Fix concurrent modification exception
Patrick Plitzner
06:20 PM Revision 644cd491 (taxeditor): ref #7597 Temporarily disable refresh after aggregation
Patrick Plitzner
05:44 PM bug #8448 (Closed): Maps settings > Bounding box inconsistent
works Andreas Kohlbecker
05:43 PM task #8414 (Closed): occurrence controller code cleaning and harmonization
all remaining tasks copied to new tickets Andreas Kohlbecker
05:36 PM task #8457 (Duplicate): FieldUnitDTO: remove taxonRelatedDerivedUnits
duplicates #8425 Andreas Kohlbecker
05:33 PM task #8457 (Duplicate): FieldUnitDTO: remove taxonRelatedDerivedUnits
copied from #8414
FieldUnitDTO.taxonRelatedDerivedUnits is an obsolete remain from an older implementation an ne...
Andreas Kohlbecker
05:08 PM task #8166 (Closed): Adapt dataportal to term structure changes
profile settings are working in the above test portals (palmweb has not been tested, since there is no cdm test insta... Andreas Kohlbecker
04:47 PM bug #8440 (Closed): specimen accession numbers link to specimen page
Wolf-Henning Kusber wrote:
>
> Warning in Test portal
> Notice: Array to string conversion in theme_item_list(...
Andreas Kohlbecker
04:46 PM task #8455 (New): Show specimen preferredStableURL as external link icon?
copied from #8440 , needs discussion. Andreas Kohlbecker
04:27 PM task #8449 (Closed): improve layout of registration page to clearly show the nomencaltural act
Andreas Kohlbecker
04:26 PM task #8436 (Closed): featureTree/* services should filter the termTrees by the TermType Feature
Andreas Kohlbecker
04:18 PM Revision 1a5b2194 (cdmlib): ref #8437 fixing LIE in DerivedUnitFacadeController
Andreas Kohlbecker
03:43 PM Revision 51c30254 (cdmlib): ref #7597 Delete all aggregated descriptions when re-aggregating
Patrick Plitzner
01:38 PM task #8406 (Feedback): specimens and occurrence code cleaning and harmonization
thank you for fixing this.
there are two commented code parts in this method:
~~~php
// $specimen_t...
Andreas Kohlbecker
11:27 AM task #8406: specimens and occurrence code cleaning and harmonization
the view for the search for the genetic accession number did not work anymore. I fixed it. Please have a look. Katja Luther
01:27 PM Revision 1f2c4dcf (cdm-dataportal): ref #8449 adapting test
Andreas Kohlbecker
01:27 PM Revision f41c2b5e (cdm-dataportal): avoid accessing uninitialized variable
Andreas Kohlbecker
01:27 PM Revision d80b3059 (cdm-dataportal): ref #8440 adapting and extending tests
Andreas Kohlbecker
12:34 PM feature request #8411: base path for export/import path selection
the wizard shows the expanded view of the file system to the last selected diectory. So the last selected directory i... Katja Luther
12:25 PM bug #8446 (Closed): Allow setPublish for subtree to filter for hybrids
seems to work as expected Katja Luther
12:06 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermT...
Agreed ... and implemented in the way you pointed out. Andreas Kohlbecker
12:05 PM Revision 19b30c4f (cdmlib): ref #8437 ITermTreeService termType Feature as filter includes also C...
Andreas Kohlbecker
11:27 AM Revision ff51c1cd (cdm-dataportal): ref #8406: fix the view for the specimen hierarchy to a genet...
Katja Luther
10:49 AM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, mis...
please review Katja Luther
10:01 AM Revision 8cb3295a (cdmlib): setters of subtreeConfigurator should be void again, adapt tests
Katja Luther

08/09/2019

02:36 PM bug #8444 (Resolved): Show warning if misapplied names / pro parte synonyms are used more then once
So I change ticket title for documentation Andreas Müller
11:59 AM bug #8444: Show warning if misapplied names / pro parte synonyms are used more then once
now the warning is implemented as well. Katja Luther
11:59 AM bug #8444 (Worksforme): Show warning if misapplied names / pro parte synonyms are used more then ...
ahh, yes, sorry, I didn't expect the taxon details to be in a subsection. But this makes sense. We can close this tic... Andreas Müller
11:19 AM bug #8444: Show warning if misapplied names / pro parte synonyms are used more then once
the publish flag is already implemented (maybe the taxon details are collapsed?).
Katja Luther
12:58 PM Revision da93b804 (taxeditor): minor
Andreas Müller
12:32 PM Revision d12aae39 (cdmlib): ref #8282: adapt save taxonnode to new doubtful attribute
Katja Luther
12:31 PM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
this is implemented now, please review. Katja Luther
12:17 PM feature request #8282 (In Progress): Implement placementDoubtful in TaxEditor
Katja Luther
12:30 PM Revision 4601cb73 (taxeditor): ref #8282: adapt editor to new doubtful attribute in taxonnode
Katja Luther
12:13 PM bug #7099 (In Progress): Make CdmAuthority a persistable class
Andreas Müller
12:11 PM Revision bd2dfdfa (cdmlib): cleanup
Andreas Müller
11:59 AM Revision 5f3e1fcb (taxeditor): fix #8444: add warning if taxon used in taxonrelationship is used ...
Katja Luther
10:36 AM feature request #8299: add typification column to scientific name and homotypical group in cdm light
please review Katja Luther
10:16 AM feature request #8454 (In Progress): Only allow certain patterns as username and groupname
Andreas Müller
09:20 AM feature request #8454 (Resolved): Only allow certain patterns as username and groupname
... to avoid unwanted characters like ;,ö*... Also avoid unvisible characters, whitespaces and linebrakes this way.
...
Andreas Müller

08/08/2019

10:08 PM Revision 3de07382 (cdmlib): minor
Andreas Müller
03:53 PM bug #8430 (Closed): maps zoom to wrong bbox with some layers
Seems to work correctly. I could not find a non-working portal. Also checked some production portals as this was rele... Andreas Müller
03:42 PM feature request #8135 (Feedback): Implement verbatim type information in TaxEditor
Works as expected. Minor issue: translation for button is missing. Can be closed afterwards. Andreas Müller
03:39 PM feature request #8334 (Feedback): Move sources for type designations to details view
Not designated (for SpecimenTypeDesignation) shows up below the sources, but should be above. Sources should be on bo... Andreas Müller
03:24 PM Revision 63ada120 (taxeditor): ref #7597 Use aggregation config (recurse aggregation = true)
Patrick Plitzner
03:24 PM Revision dead0aaf (cdmlib): ref #7597 Add configuration to data set aggregation
- implement recursive aggregation Patrick Plitzner
02:26 PM bug #8446: Allow setPublish for subtree to filter for hybrids
Kajta, can you please review functionality once implemented in TaxEditor? Andreas Müller
02:22 PM bug #8446 (Resolved): Allow setPublish for subtree to filter for hybrids
Applied in changeset commit:cdmlib|c44fd9bd6420a032ab1e04c3b92ee4c20f2aac93. Andreas Müller
02:24 PM Revision 77f78293 (cdmlib): cleanup
Andreas Müller
02:22 PM Revision c44fd9bd (cdmlib): fix #8446 Allow setPublish for subtree to filter for hybrids
Andreas Müller
02:05 PM Revision 9c128421 (taxeditor): ref #8385: adapt local and db preference pages
Katja Luther
02:03 PM Revision fe64715e (cdmlib): ref #8385: add new preference predicates
Katja Luther
01:42 PM task #8449: improve layout of registration page to clearly show the nomencaltural act
The layout is fully satisfying (for new names/types and types)
Order also checked for example for a type only:
...
Wolf-Henning Kusber
10:24 AM feature request #8453 (New): Improve performance of DescriptiveDataSet
A DescriptiveDataSet stores taxon and specimen descriptions and a set of taxon nodes. While taxon descriptions are di... Patrick Plitzner
09:38 AM bug #8440: specimen accession numbers link to specimen page
Tested for Registration page, name page, and specimen page.
Example: Gomphonella acsiae
Links are working.
W...
Wolf-Henning Kusber
09:22 AM task #8424: evaluate publish flags in the full derivative path
As far as I know the SpecimenOrObservation publish flag is not evaluated by webservices at all, yet (or only in very ... Andreas Müller
09:14 AM feature request #8452 (New): [DISCUSS] Should taxa hava an explicit taxon description for specimen?
Maybe it would be helpful to separate taxon descriptions with specimens and those with other description elements.
...
Patrick Plitzner
09:07 AM feature request #8451 (New): Link specimen to taxon via Drag and Drop
It would be a nice feature to be able to link a specimen to a taxon via drag&drop. This could be done from the specim... Patrick Plitzner
08:36 AM feature request #7589 (Closed): Performance, UX and stability patches for CharacterMatrix
Patrick Plitzner
08:36 AM feature request #7589: Performance, UX and stability patches for CharacterMatrix
Closing this ticket to avoid getting to big -> Opening new ticket with specific UX issues -> #8450 Patrick Plitzner
08:35 AM feature request #8450 (New): Character matrix UX
**Details View für Einzelwerte in Matrix**
wenn ich in der Matrix den Details View verwende (was sicher selten der F...
Patrick Plitzner

08/07/2019

10:00 PM task #8449 (Resolved): improve layout of registration page to clearly show the nomencaltural act
please review Andreas Kohlbecker
09:44 PM task #8449 (Closed): improve layout of registration page to clearly show the nomencaltural act
As discussed with Henning on Friday 2nd of August 2019, we decided for the following solution:
* the nomenclatural...
Andreas Kohlbecker
09:47 PM Revision c5abae79 (cdm-dataportal): ref #8449 registration page: better emphasizing the nomenclat...
Andreas Kohlbecker
04:54 PM feature request #8403 (Rejected): name page: show types specimens as expandable derivate tree
Andreas Kohlbecker
04:54 PM feature request #8403 (Closed): name page: show types specimens as expandable derivate tree
Andreas Kohlbecker wrote:
> code need to be cleaned up
done!
Andreas Kohlbecker
04:53 PM Revision a44d210c (cdm-dataportal): ref #8403 removing rejected implementation
Andreas Kohlbecker
04:50 PM bug #8440 (Resolved): specimen accession numbers link to specimen page
please review Andreas Kohlbecker
04:48 PM Revision e69c4103 (cdm-dataportal): ref #8440 consistent display of type specimens: link to speci...
Andreas Kohlbecker
04:06 PM Revision 2ac046d4 (taxeditor): Add missing dependency
Patrick Plitzner
03:52 PM bug #8448 (Resolved): Maps settings > Bounding box inconsistent
Andreas Kohlbecker
03:37 PM bug #8448 (Closed): Maps settings > Bounding box inconsistent
according to the settings documentation the *Bounding box* needs to be entered in degree.
After fixing #8430 using...
Andreas Kohlbecker
03:51 PM Revision 8e2d0259 (cdm-dataportal): ref #8448 changing the map setting to use the projection conf...
Andreas Kohlbecker
03:07 PM Revision 2e63da0d (cdm-dataportal): Merge tag '5.8.3' into develop
tagging hotfix 5.8.3 Andreas Kohlbecker
03:07 PM Revision 51624a65 (cdm-dataportal): Merge branch 'hotfix/5.8.3'
Andreas Kohlbecker
03:07 PM Revision 7cc1655b (cdmlib): fix #7450 try to fix failing test when running in test suite
Andreas Müller
03:06 PM Revision e39effec (cdm-dataportal): ref #8430 fixing pojection definition for epsg:7777777 (euromed)
Andreas Kohlbecker
02:44 PM Revision 89eab8c6 (taxeditor): Revert "Fix potential NPE"
This reverts commit 5e45f5399ffa158d92ef215ba484f3f230e6a5ae. Patrick Plitzner
02:44 PM Revision 40ba0cf9 (taxeditor): Revert "Disable (unused) context menu"
This reverts commit aa85a093ec65f0492e9d73cffd87f87be105e438. Patrick Plitzner
02:39 PM Revision 49c7b44e (cdm-dataportal): ref #8430 fixing pojection definition for epsg:7777777 (euromed)
Andreas Kohlbecker
02:14 PM Revision 528e8632 (taxeditor): ref #7597 Fix potential class cast exception
Patrick Plitzner
01:44 PM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, mis...
Also have in mind that the includeSharedTaxa parameter is valid for accepted taxa, misapplications and pro parte syno... Andreas Müller
01:42 PM bug #8446 (Closed): Allow setPublish for subtree to filter for hybrids
In E+M we do not want to set the publish flag to true for hybrids so we need a filter to do so. Alternatively we shou... Andreas Müller
01:39 PM feature request #7450 (Resolved): Allow setPublish for subtree to include misapplied names and pr...
Applied in changeset commit:cdmlib|5fb16579cd1fbce2bfa19f12bebc0d4711b23b90. Andreas Müller
01:39 PM Revision 5fb16579 (cdmlib): fix #7450 allow setPublish for subtree to include misapplied names an...
Andreas Müller
09:31 AM Revision 5593cba0 (cdmlib): fixing NPE in DerivedUnitFacadeCacheStrategy.getUnitNumber()
Andreas Kohlbecker

08/06/2019

02:40 PM Revision 8a1e1e44 (cdmlib): cleanup
Andreas Müller
02:14 PM Revision 27296e89 (cdmlib): cleanup and stream API for ForSubtreeConfigurator
Andreas Müller
02:13 PM Revision 98df38b9 (cdmlib): pretty print testSetSecundumForSubtree test data
Andreas Müller
01:16 PM Revision 8f81816e (taxeditor): adapt setPublishFlagConfigurator constructor call
Katja Luther
01:14 PM Revision 278d7608 (taxeditor): adapt setPublishFlagConfigurator constructor call
Katja Luther
01:03 PM Revision a138d490 (taxeditor): adapt setPublishFlagConfigurator constructor call
Katja Luther
12:53 PM Revision e867c225 (cdmlib): ref #7450 implement interfaces and signatures for setPublishForSubtre...
Andreas Müller
12:44 PM Revision de671fe5 (cdmlib): minor
Andreas Müller
12:35 PM Revision 16bef6ee (taxeditor): ref #7597 Invoke aggregation in parallel thread
- add progress monitor Patrick Plitzner
12:35 PM Revision aa85a093 (taxeditor): Disable (unused) context menu
Patrick Plitzner
12:35 PM Revision 50cf49ac (taxeditor): Fix potential NPE
Patrick Plitzner
12:35 PM Revision 5e45f539 (taxeditor): Fix potential NPE
Patrick Plitzner
12:34 PM Revision e7eee67d (cdmlib): ref #7597 Add progress monitor to aggregation service call
Patrick Plitzner
11:19 AM Revision ab6c57c0 (cdmlib): ref #8365: fix NPE in abcd tests
Katja Luther
10:02 AM Revision 4e9e938f (cdmlib): use configurator for setPublish flag
Katja Luther

08/05/2019

04:19 PM Revision f928093b (cdmlib): ref #7450 revert the incorrect c&p from last commit
Andreas Müller
04:11 PM Revision 53df0a40 (cdmlib): ref #7450 use PublishForSubtreeConfigurator in TaxonNodeService
Andreas Müller
04:11 PM Revision c1a30095 (cdmlib): cleanup
Andreas Müller
04:11 PM Revision 878c54ea (cdmlib): ref #8429 add SchemaUpdater_58_581 and implement update script for se...
Andreas Müller
04:11 PM Revision 7bd0a31e (cdmlib): minor
Andreas Müller
02:01 PM bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
... please also consider a "is used more then once" check for such relations Andreas Müller
12:42 PM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
is this only an UI issue or is it also a cdmlib-security issue? Andreas Müller
12:14 PM bug #8443 (New): a user with only rights on a subtree can edit taxa and names of another subtree
the user with rights on a subtree is able to edit taxa outside the defined subtree. The only limitation is creation a... Katja Luther
10:58 AM task #8435: Reduce logging amount of exports and other long running tasks
Katja, can you work on this? Andreas Müller
10:55 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Have you tested with termType = Character which is a subtype ...
Andreas Müller
10:37 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
Andreas Müller wrote:
> Have you tested with termType = Character which is a subtype for Feature. I don't think the ...
Andreas Kohlbecker
09:59 AM Revision f93dab43 (cdmlib): Revert "minor - fix merge conflict"
This reverts commit fc3932ac4dd186b6f5809863356912f949ae202d. Katja Luther
09:51 AM Revision fc3932ac (cdmlib): minor - fix merge conflict
Katja Luther

08/02/2019

08:39 PM feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
Similar to those created for Reference (#6663).
The fields are
* last retrieved
* externalId
* externalLink
...
Andreas Müller
08:25 PM feature request #8441 (Resolved): Add FeatureState class
... for inapplicableIf and onlyApplicableIf states and add/change the relationships to TermNode Andreas Müller
08:22 PM bug #8429 (In Progress): Rename DeterminationEvent_Reference.setOfReferences_id
For now we do the column renaming with a model change.
DeterminationEvent_Reference.setOfReferences_id = reference...
Andreas Müller
05:54 PM Revision 48468c67 (cdm-dataportal): ref #8440 specimen accession numbers link to specimen page
Andreas Kohlbecker
05:53 PM feature request #8403 (In Progress): name page: show types specimens as expandable derivate tree
code need to be cleaned up Andreas Kohlbecker
05:52 PM feature request #8403 (Rejected): name page: show types specimens as expandable derivate tree
This feature request has been rejected in favor of #8440 Andreas Kohlbecker
05:51 PM bug #8440 (Closed): specimen accession numbers link to specimen page
The specimen accession numbers, aka specimen labels, should be clickable links to the specimen page.
This is neede...
Andreas Kohlbecker
05:47 PM Revision 7449720a (cdmlib): ref #8365 adding combination of collection code and unit number as sp...
Andreas Kohlbecker
05:29 PM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
So we definetely should write tests before closing. Andreas Müller
05:27 PM task #8437 (Feedback): ITermTreeService provides a list method which supports filtering by TermT...
Have you tested with termType = Character which is a subtype for Feature. I don't think the "Restrictions" implementa... Andreas Müller
11:19 AM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermT...
please can you review my changes? Andreas Kohlbecker
05:11 PM feature request #8439 (New): Improve Layout of Registration in Name page and Search page
Improve Layout of Registration in Name page and Search page.
Example http://phycobank.org/100628
![](picture013-1....
Wolf-Henning Kusber
04:42 PM Revision 907f5e2f (cdmlib): ref #8422 dependency handling finalized in PolytomousKeyGenerator
Andreas Müller
04:42 PM Revision 54b77a28 (cdmlib): minor
Andreas Müller
04:42 PM Revision 73f1250e (cdmlib): ref #8422 add dependencies to PolytomousKeyGenerator
Andreas Müller
04:42 PM Revision 710cb94e (cdmlib): ref #8422 fix reuse of feature if it shouldn't
Andreas Müller
12:01 PM task #8438 (New): remove featureTree/* web services in August 2021 if they are unused
If the featureTree/* web services are no longer used since 2 years we can safely remove them.
Check the cdm-server...
Andreas Kohlbecker
11:56 AM task #8434 (Closed): Change FeatureTree contollers to TermTree controllers
Andreas Kohlbecker
11:55 AM task #8166 (Resolved): Adapt dataportal to term structure changes
check taxon profile settings in a couple of test portals:
* Cichorieae
* Corvidea
* Palmweb
* Cyprus
Andreas Kohlbecker
11:54 AM Revision 9725f08e (cdm-dataportal): ref #8166 using ternmType filter to restrict to feature trees...
Andreas Kohlbecker
11:51 AM Revision fc3e5e6e (taxeditor): ref #8385: fixes in preferences - continue
Katja Luther
11:48 AM Revision 515bfcff (cdmlib): ref #8385: fix TermOrder Enum
Katja Luther
11:18 AM task #8436 (Resolved): featureTree/* services should filter the termTrees by the TermType Feature
Applied in changeset commit:cdmlib|0f5323457637b6f2214287eb3101c7db121540f5. Andreas Kohlbecker
11:18 AM Revision 2ef4c225 (cdmlib): ref #8437 using the listByRestriction method in favour of a new untes...
Andreas Kohlbecker
11:18 AM Revision 0f532345 (cdmlib): fix #8436 termTree/* services with termType filter and featureTree/* ...
Andreas Kohlbecker
10:48 AM Revision c2a446b0 (taxeditor): ref #8385: fixes in preferences - getDefaults() for all pages
Katja Luther

08/01/2019

09:49 PM Revision 14987030 (cdmlib): ref #8422 fix leaf handling and simplify and complete tests
Andreas Müller
09:49 PM Revision a9256c91 (cdmlib): ref #8422 handle single value branches better
Andreas Müller
09:49 PM Revision aabca655 (cdmlib): ref #8422 change sort order for multi-taxon or multi-state branches
Andreas Müller
09:49 PM Revision feedd788 (cdmlib): cleanup
Andreas Müller
06:01 PM Revision 8cf6974b (cdmlib): ref #8434 removing deprecated featureNode/* web service mapping as th...
Andreas Kohlbecker
05:58 PM Revision 9dddc68a (cdm-dataportal): ref #8166 adapting dataportal to TermTree novelties: using ne...
Andreas Kohlbecker
03:00 PM Revision 5420e50d (cdmlib): ref #8422 some fixes for merging in PolytomousKeyGenerator
Andreas Müller
03:00 PM Revision b820a890 (cdmlib): ref #8437 first implementation for listBy termType for TermTreeServic...
Andreas Müller
03:00 PM Revision 5f16d935 (cdmlib): minor
Andreas Müller
03:00 PM Revision e0d15cb3 (cdmlib): minor toString changes
Andreas Müller
03:00 PM Revision 0174fe98 (cdmlib): ref #8422 adding test for merge mode
Andreas Müller
03:00 PM Revision 3996640f (cdmlib): minor
Andreas Müller
03:00 PM Revision b3cf04bc (cdmlib): rename dependencies
Andreas Müller
02:59 PM task #8437 (In Progress): ITermTreeService provides a list method which supports filtering by Te...
implemented but no tests yet, but maybe you can integrate into controller already Andreas Müller
12:26 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermT...
e.g.:
~~~java
public List<TermTree> list(TermType termType, Integer limit, Integer start, List<OrderHint> orde...
Andreas Kohlbecker
01:23 PM bug #8385 (In Progress): Open issues in DB preferences
Katja Luther
12:23 PM task #8436 (Closed): featureTree/* services should filter the termTrees by the TermType Feature
Die featureTree/* Service-Endpunkte sollte selbe Verhalten anzubieten wie zuvor (#8434). In diesem Fall sollte hinter... Andreas Kohlbecker
12:18 PM Revision b2205142 (cdmlib): ref #7597 Adapt to service changes and rename long running method
Patrick Plitzner
12:07 PM Revision 6ad4013c (cdmlib): fix typo
Katja Luther
11:58 AM Revision aa3118b2 (cdmlib): ref #8435: differ between info and debug level
Katja Luther
11:36 AM task #8435 (New): Reduce logging amount of exports and other long running tasks
One single CDMLight export of the euromed database produces 49173 lines of logging like :
~~~
[euromed] 2019-07-3...
Andreas Kohlbecker
10:51 AM Revision cad668ac (cdmlib): ref #8431: adaptions to show the export name in progress monitor
Katja Luther
10:50 AM Revision 23157c56 (taxeditor): ref #8431: improve progress monitor/bar in editor for import/export
Katja Luther
10:50 AM Revision 25a3ce1e (taxeditor): ref #8385: fixes for preferences
Katja Luther
10:03 AM Revision 225e3aa7 (taxeditor): ref #7597 Adapt to service changes
Patrick Plitzner
10:02 AM Revision ed6a16ee (taxeditor): ref #7597 Remove taxon tree aggregation command and handler
Patrick Plitzner
10:01 AM Revision 85ba00f8 (taxeditor): add FIXME message
Patrick Plitzner
10:01 AM Revision 78aa2ad6 (cdmlib): ref #7597 Aggregation for each taxon based on associated specimens
Patrick Plitzner
09:08 AM feature request #7510 (Worksforme): Allow entering aggregated/statistical data for single specime...
Entering statistical information is possible if the Feature/Character is defined to allow that.
The data is then e...
Patrick Plitzner
09:03 AM Revision 104ee19a (cdmlib): minor
Andreas Müller
09:03 AM Revision 4c0f844f (cdmlib): ref #8422 fix scoring for categoricalData
Andreas Müller
09:03 AM Revision 50e52e0f (cdmlib): minor
Andreas Müller
09:03 AM Revision ae7c9821 (cdmlib): ref #8422 let PKGenerator only work on TaxonDescriptions for now
Andreas Müller
08:49 AM Revision 50369001 (cdmlib): ref #8434 turing FeatureTree contollers into TermTree controllers
Andreas Kohlbecker
08:28 AM task #8434 (Closed): Change FeatureTree contollers to TermTree controllers
The `FeatureTree` contollers need to be adapted to the changes which have been applied for #6794:
* rename Featur...
Andreas Kohlbecker

07/31/2019

07:09 PM Revision 062686a1 (cdm-dataportal): adding missing quotes which broke the profile image
Andreas Kohlbecker
06:54 PM Revision 34852f2d (cdm-dataportal): ref #8415 using accepted name uuid to get the types if no ot...
Andreas Kohlbecker
06:43 PM Revision 02e8615c (cdm-dataportal): refactoring cdm_dataportal_taxon_page_specimens() to compose ...
Andreas Kohlbecker
05:05 PM Revision 93040e10 (taxeditor): add polytomous key generation to character matrix (experimental)
Patrick Plitzner
04:03 PM feature request #8432 (In Progress): Improve "default" feature tree handling
Andreas Müller
12:58 PM feature request #8432 (In Progress): Improve "default" feature tree handling
Definitions:
* **default feature tree** = term tree of type feature which holds all features in the database in a...
Patrick Plitzner
03:41 PM feature request #8433 (New): Disallow user names with whitespace
Allow only certain letter like [a-z][A-Z]_. Other usernames are errorprone.
Same for group names.
Andreas Müller
03:20 PM bug #6523: Correct display of misspellings in synonymy
Walter:
Also, erstmal, „orthographic variant“ gibt es anscheinend nur in der Botanik s.l.
Folgende Aussagen im C...
Andreas Müller
03:06 PM task #8405 (Rejected): Adapt cdm-vaadin to term structure changes
I deed, there is nothing to do about this in the cdm-vaadin project. Andreas Kohlbecker
03:01 PM task #8406 (Resolved): specimens and occurrence code cleaning and harmonization
Hi Katja,
can you please have a look if everything is as it was intended?
Andreas Kohlbecker
02:58 PM bug #8395 (Closed): NullPointerException (NPE) in NameCatalogueController
This is fully solved. Andreas Kohlbecker
02:57 PM task #8414 (In Progress): occurrence controller code cleaning and harmonization
Andreas Kohlbecker
02:53 PM Revision 3d14fdcf (cdm-dataportal): ref #8415 avoiding uninitialized variable
Andreas Kohlbecker
02:40 PM Revision a41f5463 (cdm-dataportal): Merge tag '5.8.2' into develop
tagging hotfix 5.8.2 Andreas Kohlbecker
02:40 PM Revision 4050c450 (cdm-dataportal): Merge branch 'hotfix/5.8.2'
Andreas Kohlbecker
02:40 PM Revision a77b6a1d (cdm-dataportal): fix #8430 fixing bbox transformation from data layer to base ...
Andreas Kohlbecker
02:32 PM bug #8426 (Closed): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
findFirst() will returns an Optional describing the first element of this stream, or an empty Optional if the stream ... Andreas Kohlbecker
02:15 PM Revision af8e4c4e (cdmlib): ref #8414 adding cycle detection to loadFieldUnitDTO()
Andreas Kohlbecker
01:56 PM bug #8431 (In Progress): missing status bar for cdm light export
Katja Luther
10:23 AM bug #8431 (In Progress): missing status bar for cdm light export
mail from AM:
beim Export von E+M via CDM light wird bei mir seltsamer Weise keine Statusbar angezeigt, die Prozen...
Katja Luther
10:33 AM feature request #8299 (Resolved): add typification column to scientific name and homotypical grou...
Applied in changeset commit:cdmlib|e05bda1e6ca35dfb77dba833f34203525024a9cb. Katja Luther
10:32 AM Revision e05bda1e (cdmlib): fix #8299: add typification columns to scientific name table of cdm l...
Katja Luther
10:27 AM feature request #8344 (Resolved): cdm light export: add dummy line in simpla facts table
this is already implemented. Katja Luther
10:26 AM feature request #8322 (Resolved): add sortindex to cdm light export
yes it is already implemented, please review Katja Luther
09:04 AM bug #8430: maps zoom to wrong bbox with some layers
This should now be fixed for all situations. Could you please take a second look? Andreas Kohlbecker
08:45 AM bug #8430 (Resolved): maps zoom to wrong bbox with some layers
Applied in changeset commit:cdm-dataportal|779840f48519040a2ab59db5b7881ef0a265d6a8. Andreas Kohlbecker
08:43 AM bug #8430 (Closed): maps zoom to wrong bbox with some layers
This problem has been fixed for `POINT` maps (#8347) but is not yet fully solved for `AREA` maps.
`openlayers_map....
Andreas Kohlbecker
08:45 AM Revision 779840f4 (cdm-dataportal): fix #8430 fixing bbox transformation from data layer to base ...
Andreas Kohlbecker

07/30/2019

09:53 PM bug #8429: Rename DeterminationEvent_Reference.setOfReferences_id
The reason is that the references are called setOfReferences while the getter is getReferences.
Simplest solution:...
Andreas Müller
05:25 PM bug #8429 (Resolved): Rename DeterminationEvent_Reference.setOfReferences_id
[algaterra_new] 2019-07-30 15:49:23,008 INFO [qtp532445947-4997] [eu.etaxonomy.cdm.remote.controller.BaseController] ... Andreas Kohlbecker
09:43 PM bug #8426: IndexOutOfBoundsException during serialization of RegistrationWorkingSet
isn't this very easy to fix? Therefore I put it to 5.9 (and also tried to fix in the meanwhile).
Open question: do...
Andreas Müller
09:40 PM bug #8426 (Resolved): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
Applied in changeset commit:cdmlib|6b0f8cdfe1643a96638e02dbd924ffd0007785f8. Andreas Müller
05:09 PM bug #8426 (Closed): IndexOutOfBoundsException during serialization of RegistrationWorkingSet

IndexOutOfBoundsException during serialization of RegistrationWorkingSet:
~~~
[flora-central-africa] 2019-07-...
Andreas Kohlbecker
09:40 PM Revision ddaea59b (cdmlib): ref #8422 PolytomousKeyGenerator: improving sort order and fixing sco...
Andreas Müller
09:37 PM Revision 6b0f8cdf (cdmlib): fix #8426 fix IOOB Exception in RegistrationWorkingSet serialization
Andreas Müller
05:19 PM bug #8428 (New): NPE in ClassificationServiceImpl.loadTreeBranchToTaxon()

~~~
[euromed] 2019-07-30 16:07:08,780 INFO [qtp532445947-5019] [eu.etaxonomy.cdm.remote.controller.ClassificationP...
Andreas Kohlbecker
05:14 PM Revision 2d0650ce (cdmlib): ref #8422 refactoring PKGenerator+test and minor fixes
Andreas Müller
05:11 PM bug #8427 (New): LazyInitializationException in NameController.doGetTaggedFullTitle()
found in production server log:
* /cichorieae/name/ddf9cc53-cdfc-45d5-98f9-1e5ef9a8e4df/taggedFullTitle
* /cichor...
Andreas Kohlbecker
03:27 PM feature request #8403: name page: show types specimens as expandable derivate tree
please see http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/f5048e6e-303a-41f6-933b-84c678e... Andreas Kohlbecker
11:35 AM feature request #8403 (Resolved): name page: show types specimens as expandable derivate tree
Andreas Kohlbecker
03:16 PM task #8425 (New): FieldUnitDTO: remove taxonRelatedDerivedUnits
FieldUnitDTO has the field `taxonRelatedDerivedUnits`. This can be removed, this is a relict of a first approach to ... Andreas Kohlbecker
03:12 PM task #8424 (New): evaluate publish flags in the full derivative path
eu.etaxonomy.cdm.remote.controller.OccurrenceController.doGetOccurencesDTO(@PathVariable(value="uuid") UUID uuid, Htt... Andreas Kohlbecker
03:01 PM bug #8423 (New): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a ...
OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection<FieldUnitDTO> fieldUnits, HashMap<UUID,... Andreas Kohlbecker
02:53 PM bug #8422 (In Progress): Make PolytomousKeyGenerator work (correctly)
Andreas Müller
02:53 PM bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
Andreas Müller
02:25 PM task #8406 (In Progress): specimens and occurrence code cleaning and harmonization
Andreas Kohlbecker
02:25 PM Revision a0be8d7e (cdm-dataportal): ref #8406 dapting portal to renamed controller endpoint: taxo...
Andreas Kohlbecker
02:22 PM Revision 2e09903a (cdmlib): ref #8414 renaming taxon/{uuid}/specimensOrObservationDTOs to taxon/...
Andreas Kohlbecker
02:15 PM bug #8385: Open issues in DB preferences
Passing the ticket back to Katja. We may have a look on it together, though. Patrick Plitzner
02:14 PM feature request #8238: Allow interoperability between term trees
Does not have to solved in this milestone -> move to 5.10 Patrick Plitzner
01:52 PM feature request #8415 (Closed): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to s...
Andreas Kohlbecker
01:52 PM feature request #8415 (Resolved): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to...
Applied in changeset commit:cdm-dataportal|dfbc27b033a2eda86d74b57a4d14189f7d6e5cd0. Andreas Kohlbecker
01:52 PM Revision dfbc27b0 (cdm-dataportal): fix #8415 using /portal/name/{uuuid}/typeDesignationsInHomoty...
Andreas Kohlbecker
01:48 PM feature request #8390 (Closed): implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
Andreas Kohlbecker
01:46 PM Revision 7dde6846 (cdmlib): ref #8390 uncommenting typeDesignationsInHomotypicalGroup service end...
Andreas Kohlbecker
01:07 PM task #8414: occurrence controller code cleaning and harmonization
http://test.e-taxonomy.eu/dataportal/preview/algaterra-new/cdm_dataportal/taxon/c3350592-db9d-44cb-80ed-29bfb685e3a0/... Katja Luther
12:09 PM Revision aa8cf7e6 (cdmlib): first implementation of /portal/name/{uuuid}/typeDesignationsInHomoty...
Andreas Kohlbecker
11:35 AM bug #8421 (New): icons in compose_specimen_table_top_down() are not visible
in `compose_specimen_table_top_down()` font awesome icons are added to the render array, but these are not getting di... Andreas Kohlbecker
11:28 AM task #8420 (New): improve admin settings for specimens representations
* The kind of representation of specimens lists needs to be selectable via a set of radio buttons.
* should the sett...
Andreas Kohlbecker
11:25 AM task #8419 (New): harmonization of the different specimen representations
* There are different kinds of "views" for specimens lists
* some of them provide a pager others do not
* do ...
Andreas Kohlbecker
11:21 AM task #8418 (Closed): specimens and occurrence links must not have a target=_blank attribute
Andreas Kohlbecker
11:01 AM task #8418 (Closed): specimens and occurrence links must not have a target=_blank attribute
Even is this was frequently requested by users using the target attribute is in general considered an UX anti-pattern... Andreas Kohlbecker
11:02 AM Revision cea59762 (cdm-dataportal): ref #8418 removing all target=_blank attributes from specimen...
Andreas Kohlbecker
10:18 AM Revision f7a4716c (taxeditor): ref # 8135 Make textual type designation element non-experimental
Patrick Plitzner
10:14 AM bug #8417 (New): LazyInitializationException in TermDTO for media
Im TaxonRelationshipsDTOTest, der ein einfacher UnitTest ist kommt es zu Problemen wegen der media die neuerdings an ... Patrick Plitzner
09:20 AM feature request #8412 (In Progress): Remaining issues for cdm light export (II)
Katja Luther
08:58 AM Revision ae177dac (cdm-dataportal): ref #8403 types specimens as expandable derivate tree in name...
Andreas Kohlbecker
08:57 AM Revision 4c158e4e (cdm-dataportal): ref #8414 adapting portal to modified service mapping
Andreas Kohlbecker
08:44 AM Revision d2cbce25 (cdmlib): ref #8414 refactoring OccurrenceController:
- method to load a single FieldUnitDTO
- adding all intermediate derivatives to the FieldUnitDTO
- renaming servi...
Andreas Kohlbecker

07/29/2019

03:14 PM Revision df79024a (taxeditor): Adapt to model change - (DescriptiveDataSet TermTree<Feature>)
Patrick Plitzner
02:31 PM Revision f79b990b (cdmlib): Remove wildcard from generics
Patrick Plitzner
02:21 PM Revision 10858926 (cdm-dataportal): using the /portal/name/{uuuid}/typeDesignationsInHomotypicalG...
Andreas Kohlbecker
02:20 PM Revision 961319fe (cdm-dataportal): ref #8406 clenaing and harmonization of the specimen related ...
Andreas Kohlbecker
02:13 PM bug #8416 (New): Array to string conversion problem in render array prodiced for specimen page
At leas the specimen page for (B B GT 0024094) in phycobank ( http://edit.test/d7/phycobank/cdm_dataportal/occurrence... Andreas Kohlbecker
02:06 PM Revision 70b053e4 (cdmlib): ref #8406 cleaning up occurrence controller code
Andreas Kohlbecker
02:04 PM feature request #8415 (Closed): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to s...
copied from #6380.
This webservice should be used to speed up `type_designations_for_synonymy_group($synonymy_grou...
Andreas Kohlbecker
02:02 PM Revision dd49afb6 (cdmlib-apps): ref #6794 TermTreeNode-> TermNode in cdmlib-apps
Andreas Müller
01:59 PM task #8414 (Closed): occurrence controller code cleaning and harmonization
eu.etaxonomy.cdm.remote.controller.OccurrenceController.doGetOccurencesDTO(@PathVariable(value="uuid") UUID uuid, Htt... Andreas Kohlbecker
12:36 PM feature request #8413 (New): Abcd import with file containing list of unit ids
For a bulk import it is necessary to have the possibility to import all specimen of a list of unit IDs Katja Luther
10:36 AM bug #6627 (Resolved): Remaining cdm light issues
created a new "remaining issues" ticket and close this one Katja Luther
10:35 AM feature request #8412 (In Progress): Remaining issues for cdm light export (II)
* Instance name and instance ID
* Discuss whether we should handle the citation facts separate to the other simple...
Katja Luther
10:29 AM feature request #8411 (New): base path for export/import path selection
mail from w.b.
Hallo,
ein nice to have, wohl vor allem für Leute die nicht ständig in einer Datenbank arbeiten, ...
Katja Luther

07/26/2019

01:22 AM Revision 3fcd7421 (cdmlib): fix PolytomousKeyGenerator (not yet ready)
Andreas Müller
01:22 AM Revision 90bce0d8 (cdmlib): add some factory methods
Andreas Müller
01:21 AM Revision 1ed092db (cdmlib): allow handle multiTaxon nodes in polytomousKey.print
Andreas Müller
01:20 AM Revision 8c7285ac (cdmlib): fix asList(Recursive) methods
Andreas Müller
01:19 AM Revision dc572c3e (cdmlib): adapt DescriptiveDataSet to allow also descriptive systems with featu...
Andreas Müller
01:18 AM Revision 21fbf707 (cdmlib): cleanup
Andreas Müller
 

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