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From 08/29/2020 to 09/27/2020

09/25/2020

04:48 PM Revision 7e3f68ec (cdm-dataportal): ref #9209 renabling previously comitted fix for missing name ...
Andreas Kohlbecker
04:38 PM Revision 1d191032 (cdm-dataportal): further claning up and harmonization of annotations_and_sourc...
Andreas Kohlbecker
04:27 PM Revision 6743dd7f (cdm-dataportal): better converstion from drupal settings to handle_annotations...
Andreas Kohlbecker
04:06 PM Revision f4ac05a8 (cdm-dataportal): moving function annotations_and_sources_config function
Andreas Kohlbecker
03:16 PM Revision f34df40f (cdm-dataportal): disabling erroneoulsy committed code
Andreas Kohlbecker
03:03 PM Revision bde9a2a3 (cdmlib): cdmLight: fix missing name of toRelationships
Katja Luther
02:51 PM Revision ec9e7738 (cdm-dataportal): further hamonization of annotations_and_sources handling - mo...
Andreas Kohlbecker
02:42 PM Revision d86468e9 (cdm-dataportal): further hamonization of annotations_and_sources handling
Andreas Kohlbecker
02:41 PM bug #4964 (Duplicate): footnotes for taxonRelationship sources and annotations should be rendered...
closing as duplicate of #8543 Andreas Kohlbecker
11:35 AM Revision c89e7b7c (taxeditor): test remove junit from taxeditor.test
Katja Luther
11:04 AM Revision 8662bcde (cdm-vaadin): ref #9105 extending init strategy for checkEmpty() in model clas...
Andreas Kohlbecker
10:17 AM task #9189 (Resolved): Move datasource view to taxeditor.webapp
Katja Luther
10:15 AM Revision e0674b99 (taxeditor): ref #9190: rename webapp to local
Katja Luther
10:03 AM task #9233 (In Progress): provide feedback mechanism for euro+med
Hallo,
ich habe mich daran gemacht ein Konzept für die Umsetzung der Feedbackfunktion zu entwickeln.
Wenn man d...
Andreas Kohlbecker
09:52 AM Revision aaa130b3 (taxeditor): ref #9190: rename webapp to local
Katja Luther

09/24/2020

06:58 PM Revision 8229b260 (cdm-dataportal): ref #9233 providing hook implementation to integrate modal_fo...
Andreas Kohlbecker
06:56 PM task #9233: provide feedback mechanism for euro+med

Eine weniger störende, aber wohl auch effektive Maßnahme ist es, nur eine „I am no robot“ checkbox zu haben – d...
Andreas Kohlbecker
06:51 PM task #9233 (In Progress): provide feedback mechanism for euro+med
Requirements:
* allow feedback for annonymous users per cdm content page
* store feedback in db
* feedback refer...
Andreas Kohlbecker
06:25 PM feature request #9232: Name page: taxon section improvement
Hallo,

bezüglich „Taxon for this name”:
die derzeitige Anzeige (wie auf http://cichorieae.e-taxonomy.net/p...
Andreas Kohlbecker
06:22 PM feature request #9232 (New): Name page: taxon section improvement
copied from #8391
A) distinguish taxa which are directly associated to the name and those only using the same simp...
Andreas Kohlbecker
06:17 PM feature request #8304: Name page redirects to according taxon depending on query parameter
Hi Andreas, I am voting to close this issue as it is 1. fully solved and secondly the solution is not preventing us f... Andreas Kohlbecker
06:03 PM feature request #8108 (Closed): Name page shows complete name information (I)
According my interpretation of the last comment to this ticket I am closing it now.
Please reopen if I am misinter...
Andreas Kohlbecker
05:28 PM task #9231: Create statistics for Euro+Med
Query for 1.
~~~ sql
-- EM Basis query
SELECT rankName, STATUS, n
FROM
(
SELECT 'All' AS rankName, COUNT(*) ...
Andreas Müller
05:22 PM task #9231: Create statistics for Euro+Med
Query for 2.
~~~sql
-- EM Basis query
SELECT areaMarker, rankName, STATUS, n
FROM
(
SELECT 'All' AS rankName...
Andreas Müller
05:07 PM task #9231 (New): Create statistics for Euro+Med
Generally absent taxa or taxa without distribution should not be included. Same for unpublished taxa and "valueless" ... Andreas Müller
05:02 PM Revision fef9465d (cdm-vaadin): ref #9124 fix altitude recommended measurement units issue in vaadin
Andreas Müller
03:36 PM bug #9124: Altitude feature should have [m] as measurement unit by default
The first implementatin of the update script had a serious bug as it filled the table DefinedTermBase_StatisticalMeas... Andreas Müller
03:30 PM Revision 892b82f3 (taxeditor): rename ICdmServerError
Andreas Müller
03:19 PM Revision c98ed132 (taxeditor): ref #9190 fix compile error in test for CdmServerInfo.getCdmServers()
Andreas Müller
03:11 PM Revision 724595b1 (taxeditor): ref #9124 fix taxeditor test H2
Andreas Müller
03:11 PM Revision 0bc9515f (taxeditor): cleanup
Andreas Müller
03:01 PM Revision 8878e1fa (cdmlib): ref #9124 fix incorrect Altituded recommended measurement unit update...
Andreas Müller
01:54 PM Revision 80528bff (cdmlib): cleanup
Andreas Müller
01:50 PM Revision aeea6b48 (taxeditor): ref #9190: continue working on extracting all local issues to an e...
Katja Luther
12:33 PM Revision 78009a08 (cdmlib): ref #9225 adapting TaxonGraphHibernateListener processor and test to ...
Andreas Kohlbecker
12:29 PM bug #9230 (New): Type in preparation of a published name displayed in PhycoBank Portal
Similar problem to the already solved one with displayed unpublished names related to published names.
The problem...
Wolf-Henning Kusber
10:28 AM Revision 02fcd573 (cdmlib): ref #9225 fix setNomenclaturalSource bidirectional setting
Andreas Müller

09/23/2020

02:56 PM Revision ac6ef9a3 (taxeditor): ref #9225 adapt Test H2 in taxeditor
Andreas Müller
12:14 PM Revision 3dcbcc9f (taxeditor): cleanup
Katja Luther
11:17 AM Revision 401e8678 (taxeditor): remove experimental remote package
Katja Luther

09/22/2020

07:38 PM task #9227 (Worksforme): corrected entry cannot be saved
Kind of Unit can be added in Vaadin,
if (1) this is the first step before
(2) editing other parts and (3) saving th...
Wolf-Henning Kusber
10:58 AM task #9227: corrected entry cannot be saved
![](picture360-1.png) Wolf-Henning Kusber
06:45 PM feature request #9224: openlayers map handles server error per layer and present a user message
made available to production servers as HFX release 5.17.1.
Needs more testing though regarding error conditions ...
Andreas Kohlbecker
06:28 PM feature request #9224 (In Progress): openlayers map handles server error per layer and present a ...
Andreas Kohlbecker
06:41 PM Revision c163c10f (cdm-dataportal): Merge tag '5.17.1' into develop
5.17.1 Andreas Kohlbecker
06:41 PM Revision cfc80fd5 (cdm-dataportal): Merge branch 'hotfix/5.17.1'
Andreas Kohlbecker
06:41 PM Revision 30b0d98b (cdm-dataportal): ref #9224 preliminar implementation of map server error feedb...
Andreas Kohlbecker
06:36 PM Revision 9f2631d1 (cdm-dataportal): ref #9224 preliminar implementation of map server error feedb...
Andreas Kohlbecker
06:35 PM Revision 825d9f7a (cdm-dataportal): relabeling map server
Andreas Kohlbecker
06:26 PM bug #6356 (Resolved): taxontree sort order as in editor
Please confirm that the sort order is now as expected. Andreas Kohlbecker
06:25 PM bug #6356: taxontree sort order as in editor
The sort code in `cdm_taxontree_populate()` mentioned above is related to no longer used special featured of the taxo... Andreas Kohlbecker
06:12 PM bug #6356 (In Progress): taxontree sort order as in editor
Andreas Kohlbecker
06:11 PM Revision af3fb709 (cdmlib): ref #6356 using TaxonNodeSortMode.RankAndAlphabeticalOrder as default...
Andreas Kohlbecker
05:01 PM Revision 4a8e796d (cdmlib): AutoPropertyInitializer with more type savety
Andreas Kohlbecker
04:52 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading...
tested as being fully functional Andreas Kohlbecker
04:52 PM feature request #9229 (Resolved): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loadi...
Applied in changeset commit:cdm-vaadin|84b030bfbe7c9c0df2b160149c23bb5add938b2a. Andreas Kohlbecker
02:43 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading...
due to the changes made in #6581 the setter for NomenclaturalStatus in Taxon Name checks for empty SingleSource entit... Andreas Kohlbecker
04:28 PM Revision a2e4821c (cdmlib): cleanup and improve data and docu for BeanInitializerIntegrationTest....
Andreas Müller
04:26 PM Revision 8e465f0c (cdmlib): cleanup
Andreas Müller
03:55 PM Revision 87913ce3 (cdmlib): ref #9225 fix AdvancedBeanInitializer test
Andreas Müller
02:46 PM Revision 84b030bf (cdm-vaadin): fix #9229 using NomenclaturalStatusDTO in the TaxonNameEditor
Andreas Kohlbecker
12:35 PM Revision 3c03428f (taxeditor): experimental fix for LinkageError related to javax.validation
Andreas Kohlbecker
12:35 PM Revision 2d909919 (cdmlib): ref #6581 , ref #9225 cleanup TaxonName from nomenclaturalSource hand...
Andreas Müller
12:33 PM Revision 9570db31 (cdmlib): cleanup
Andreas Müller
12:33 PM Revision 12411f3e (cdmlib): ref #9225 fix ValidationTest / 3rd Level duplicate validation for ta...
Andreas Müller

09/21/2020

04:58 PM Revision 3829682c (cdmlib): ref #9225 !! PRELIMINARY also ValidationTest
Andreas Müller
04:49 PM Revision 93cc59a0 (cdm-vaadin): ref #9225 adapt vaadin test data to new NomenclaturalSource mappi...
Andreas Müller
04:49 PM Revision adec36b1 (cdm-vaadin): cleanup
Andreas Müller
04:46 PM Revision 286f20a7 (cdmlib): ref #9225 !! PRELIMINARY ignore failing tests
Andreas Müller
04:45 PM Revision ee7148ab (cdmlib): cleanup
Andreas Müller
04:17 PM Revision 893b0a7c (cdmlib): ref #9225 revert direction of TaxonName.nomenclaturalSource -> Nomen...
Andreas Müller
03:11 PM Revision a23d2d0a (taxeditor): move string externalization
Katja Luther
01:12 PM Revision 8cd385e1 (taxeditor): add connect command to webapp
Katja Luther
12:43 PM Revision 74947d40 (taxeditor): cleanup
Katja Luther
12:23 PM Revision 821fe02d (taxeditor): create new branch webapp
Katja Luther
10:43 AM task #9228 (New): Adaptations to allow editing Centaurea in Flora of Greece
It has been decided to edit Centaurea data in Flora of Greece. For making this possible a couple of issues need to be... Andreas Müller
10:33 AM task #9227: corrected entry cannot be saved
http://phycobank.org/7587 (Import of a 1999 published entry)See screen shot
In TaxEDITor the addition was possible...
Wolf-Henning Kusber
09:58 AM task #9227 (Feedback): corrected entry cannot be saved
Could you try fix the type designation in the Taxonomic Editor by adding the missing "Kind of Unit" information? Andreas Kohlbecker

09/18/2020

10:01 AM Revision 500c500e (taxeditor): ref #9189: move datasource to webapp - adapt manifest files
Katja Luther
09:37 AM Revision b33b7c33 (taxeditor): ref #9189: move datasource to webapp - adapt manifest files
Katja Luther
09:29 AM Revision 8dde8e84 (taxeditor): ref #9189: move datasource to webapp - continue
Katja Luther

09/17/2020

05:08 PM task #9227 (Worksforme): corrected entry cannot be saved
Entry from 1999 is missing the mandatory entry Kind of Unit = Specimen.
Action: Add Editorial note "PhycoBank (17 ...
Wolf-Henning Kusber
03:12 PM Revision 139caafa (cdmlib): ref #6589 add ProtologMover (not yet ready)
Andreas Müller
03:12 PM Revision ce8b5e56 (cdmlib): cleanup
Andreas Müller
03:11 PM Revision d8798a32 (cdmlib): fix logging in StructuredDescriptionAggregationTest
Andreas Müller
03:10 PM feature request #6589 (In Progress): Handle protologue as original source with URI link
Andreas Müller
01:32 PM Revision 192243b3 (taxeditor): ref #9189: move datasource to webapp
Katja Luther

09/16/2020

03:09 PM Revision 5dd900d6 (cdmlib): adding more explanation to test assertion
Andreas Kohlbecker
09:58 AM Revision d27add60 (cdmlib): ref #9225 update cached model
Andreas Müller

09/15/2020

10:24 PM bug #9223 (Feedback): make changes of nomenclatural references detectable again in TaxonGraphBefo...
Andreas Kohlbecker
10:24 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransacti...
Solved, and can be closed.
@Andreas Müller: can you think of a situation which is not yet covered by the [new imp...
Andreas Kohlbecker
10:21 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBefo...
Applied in changeset commit:cdmlib|16b01d149133e36d735b05203a5b26d701a97d93. Andreas Kohlbecker
10:02 AM bug #9223 (In Progress): make changes of nomenclatural references detectable again in TaxonGraphB...
we decided to implement b) . This has been done in #9225 so we can continue here now. Andreas Müller
10:21 PM Revision 16b01d14 (cdmlib): fix #9223 TaxonGraphBeforeTransactionCompleteProcess using Noemclatur...
Andreas Kohlbecker
04:44 PM feature request #9226 (Duplicate): DisabledException should be caught
This is a duplicate for #8944 Andreas Müller
02:35 PM feature request #9226 (Duplicate): DisabledException should be caught
When a disabled user tries to connect to a cdm instance the DisabledException is thrown, this exception should be cau... Katja Luther
11:18 AM Revision f5d9192a (taxeditor): ref #9225: adapt editor to new NomenclaturalCource
Katja Luther
11:03 AM Revision 2c6b7b29 (cdmlib): Revert "temporarily unignore failing test"
This reverts commit e488332815bad4f7e3de2844f22cf8e36b82314c. Andreas Müller
11:02 AM Revision e4883328 (cdmlib): temporarily unignore failing test
Andreas Müller
10:48 AM feature request #4383: multiple issues with de-duplication of references in bibliography
I think we should reasses the priority of this ticket as it is reported from time to time Andreas Müller
10:46 AM feature request #4383: multiple issues with de-duplication of references in bibliography
Same problem reported by Sophia:
mir ist gerade aufgefallen dass im Portal der Flora Cuba die Referenzen, die bei ...
Andreas Müller
10:28 AM Revision 79deca9c (taxeditor): avoid NPE in taxonnodedetail element
Katja Luther
10:21 AM Revision 05767456 (taxeditor): cleanup navigation fragment
Katja Luther
10:01 AM feature request #9225 (In Progress): Make TaxonName.nomenclaturalSource a new DescriptionElementS...
This is implemented but there are still tests failing in vaading which seems to be related to this change. Andreas Müller
09:33 AM Revision 19deb7da (cdmlib): ref #9225 implement NomenclaturalSource (cleanup and update script)
Andreas Müller
09:25 AM Revision 7c1e42bf (cdmlib): cleanup
Andreas Müller
09:23 AM Revision 2dc2379c (cdmlib): deprecate printDataSetWithNull
Andreas Müller

09/14/2020

12:31 AM Revision 7793d2a5 (cdm-vaadin): cleanup
Andreas Müller
12:30 AM Revision 9d33a6ec (cdm-vaadin): ref #9225 adapt vaadin test data to NomenclaturalSource
Andreas Müller
11:03 PM Revision 50c1d6f4 (cdmlib): cleanup
Andreas Müller
11:03 PM Revision f694f9a2 (cdmlib): ref #9225 implement NomenclaturalSource
Andreas Müller
11:03 PM Revision 3a5f3569 (cdmlib): cleanup
Andreas Müller
11:03 PM Revision cdbbcaaf (cdmlib): ref #6581 add listener to TaxonName.nomenclaturalSource (cont.)
Andreas Müller
11:03 PM Revision fb36cce9 (cdmlib): ref #3547 remove created and updated in CdmEntityDaoBaseTest
Andreas Müller
11:03 PM Revision 8def7553 (cdmlib): cleanup
Andreas Müller
11:02 PM Revision 9e4028e0 (cdmlib): ref #6581 add listener to TaxonName.nomenclaturalSource
Andreas Müller
10:39 PM feature request #9225 (In Progress): Make TaxonName.nomenclaturalSource a new DescriptionElementS...
copied from #6581 and #9223
This is required for nomenclatural (detail) reference state change handling
Andreas Müller
03:25 PM bug #9143 (New): Distribution data sources are missing if multiple distributions exist
Andreas Müller
01:08 PM feature request #9224 (In Progress): openlayers map handles server error per layer and present a ...
in `openlayers_layers.js` error handlers need to be implemented that allow for presenting user messages in case of se... Andreas Kohlbecker
08:38 AM Revision 4ea4c60e (cdm-dataportal): additional map server url http://geocatalogue.africamuseum.be...
Andreas Kohlbecker

09/11/2020

05:57 PM bug #9223 (Feedback): make changes of nomenclatural references detectable again in TaxonGraphBefo...
Update!
d) und c) scheiden aus denn bei einem SessionFlush, ohne saveOrUpdate(taxonName) wird der TaxonGraphBefore...
Andreas Kohlbecker
05:57 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransacti...
Hallo,
die sicherste und einfachste Lösung a) wäre eine neue DescriptionSource zu erzeugen wenn sich die citation ...
Andreas Kohlbecker
05:56 PM bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransacti...
Hallo Andreas
die Umstellung auf Single-Source-Referenzen bei TaxonName verträgt sich mit dem TaxonGraphBeforeTran...
Andreas Kohlbecker
05:53 PM bug #9223 (Feedback): make changes of nomenclatural references detectable again in TaxonGraphBefo...
due to the model modifications made for #6581 the `TaxonGraphHibernateListenerTest.testChangeNomRef()` fails since th... Andreas Kohlbecker
04:19 PM Revision a38340e1 (cdmlib): ref #6581 fixing means to get bean property
Andreas Kohlbecker
01:22 PM task #7862 (Closed): improve documentation on TaxonGraphHibernateListener and related classes
Andreas Kohlbecker
01:22 PM task #7862 (Resolved): improve documentation on TaxonGraphHibernateListener and related classes
Applied in changeset commit:cdmlib|a38e2585039171f028d1ca790949860b74f852be. Andreas Kohlbecker
01:22 PM Revision a38e2585 (cdmlib): fix #7862 full documentation on TaxonGraphHibernateListener, TaxonGra...
Andreas Kohlbecker
11:57 AM Revision 93f3d033 (cdm-dataportal): ref #9034 removing preliminar life span code with extensions
Andreas Kohlbecker

09/10/2020

05:31 PM Revision dfb24d50 (cdm-dataportal): improving message and fixing invalid medthod name in calling ...
Andreas Kohlbecker
02:15 PM Revision aa8405de (cdmlib): cleanup
Andreas Müller
02:14 PM Revision e7eb9f3d (cdmlib): ref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.x...
Andreas Müller
02:13 PM Revision d39d9fcd (cdmlib): ref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml
Andreas Müller
02:13 PM Revision d1dade1e (cdm-vaadin): ref #9105 extending init strategy for checkEmpty() in model classes
Andreas Kohlbecker
02:07 PM Revision 002ce68d (cdm-dataportal): name page 'Taxa for this name' title also in singular form
Andreas Kohlbecker
01:26 PM Revision 53cc93c6 (cdmlib): cleanup and some java doc
Andreas Müller
12:50 PM Revision cbd1fe7a (cdm-vaadin): ref #6581 fixing erroneously changes DTP field name
Andreas Kohlbecker
11:09 AM Revision 5a5c5045 (cdm-dataportal): page health check for Drupal errors and warnings configurable
Andreas Kohlbecker
09:37 AM Revision 66cd127d (cdmlib): cleanup
Andreas Müller
09:31 AM Revision 7058de02 (cdm-vaadin): ref #6581 adapt vaadin to new nomenclatural source handling
Andreas Müller
08:34 AM Revision 98505c5e (cdmlib): ref #6581 ref #9222 fixing NPE in TaxonPortalController
Andreas Kohlbecker
08:24 AM Revision 96847705 (cdmlib): ref #6581 ref #9222 fixing init strategy in TaxonPortalController
Andreas Kohlbecker

09/09/2020

10:24 PM Revision 9f76b617 (cdmlib): fix TaxonName.getCitationString()
Andreas Müller
10:24 PM Revision f132fe1d (cdmlib): cleanup
Andreas Müller
06:16 PM Revision 84d9a25e (cdmlib): ref #6581 ref #9222 adding PolytomousKeyNodePortalController and miss...
Andreas Kohlbecker
06:13 PM Revision a9a297f6 (cdm-dataportal): ref #9222 fixing bug in polytomous key rendering related to s...
Andreas Kohlbecker
04:42 PM Revision e9c8c928 (cdmlib): remove method rectifyNameCacheStrategy and some cleanup
Andreas Müller
04:37 PM Revision 6d399b0d (cdmlib): cleanup
Andreas Müller
03:45 PM Revision ee0b6690 (cdmlib): fix return type of clone methods in CdmBase classes and some cleanup
Andreas Müller
02:31 PM Revision 8850b8e7 (cdmlib): cleanup
Andreas Müller
02:31 PM Revision 19d5d18b (cdmlib): ref #9204 adapt all spring application context xml configuration file...
Andreas Müller
01:47 PM Revision afb1f504 (cdm-dataportal): ref #9222 adapting tests to more data being visible in the sp...
Andreas Kohlbecker
12:45 PM Revision 7d19ee1c (cdmlib): ref #9222 adapting dataportal and tests to single sourced classes - t...
Andreas Kohlbecker
12:44 PM Revision 46a93d1e (cdm-dataportal): ref #9222 adapting specimens and typedesignations to single s...
Andreas Kohlbecker
11:05 AM Revision f02e26e1 (cdm-dataportal): adapting remainig tests to new date formating
Andreas Kohlbecker
10:12 AM Revision 6679207a (cdm-dataportal): ref #9222 adapting dataportal and tests to single sourced cla...
Andreas Kohlbecker
10:07 AM Revision 4dee6d44 (cdmlib): ref #9222 ref #6581 adapting web services to single sourced classes
Andreas Kohlbecker

09/08/2020

05:05 PM task #9222 (New): Adapt dataportal to switch to originalSource for remaining single sourced classes
this affects all single sources classes (#6581) except for TaxonNode which has been handled earlier already Andreas Kohlbecker
02:28 PM Revision ad6ad4c6 (cdm-dataportal): cleaning unused variable
Andreas Kohlbecker
02:27 PM Revision 43a2f169 (cdm-dataportal): ref #9087 restoring erroneously removed error check
Andreas Kohlbecker
09:55 AM feature request #9221: New preferences for 'project metadata'
I think the storing location still needs to be discussed. It could also be a new CDM table "project" or maybe CdmMeta... Andreas Müller
09:13 AM feature request #9221 (New): New preferences for 'project metadata'
For cdmLight/GfBio and DwC-A we need some meta data of the project, to avoid to enter them for each export we should ... Katja Luther
09:10 AM feature request #9110: Add additional informations to metadata table of cdmLight
Andreas Müller wrote:
> Some of these new data seem to be very GfBio specific so I wonder if we should have them in ...
Katja Luther

09/07/2020

12:45 AM Revision df19b88a (cdmlib-apps): update BgbmInstancesUpdater to current state
Andreas Müller
10:38 PM Revision e29ed013 (cdmlib): adapt TestModelUpdate
Andreas Müller
10:37 PM Revision c754177e (cdmlib): ref #6581 fix detail handling with single quote character
Andreas Müller
10:34 PM Revision cc651bea (cdmlib): ref #9124 skip altitude adder if altitude feature does not yet exist
Andreas Müller
10:32 PM Revision e830b16f (cdmlib): cleanup
Andreas Müller
06:37 PM Revision 5a407e53 (cdmlib-apps): update image imports to new apache commons imaging
Andreas Müller
06:19 PM Revision 01146fd8 (cdmlib-apps): cleanup
Andreas Müller
06:11 PM Revision aea2f0ea (cdm-dataportal): ref #9220 registratin page using query param 'identifier' to ...
Andreas Kohlbecker
05:52 PM Revision ec8b3c45 (cdmlib): fix #8964 update reverse label for later homonym (update script)
Andreas Müller
05:52 PM Revision 5a3638fe (cdmlib): fix #8326 update label for blocking name and isonym relationships (up...
Andreas Müller
05:52 PM Revision d7bb67dd (cdmlib): fix #9124 add meter to altitude (update script)
Andreas Müller
05:52 PM Revision 662d3c82 (cdmlib): fix #9120 update flowering period as supports temporal data (update s...
Andreas Müller
05:52 PM Revision 91f64efa (cdmlib): fix #9121 add abbrevLabel and symbol to features flowering and fruiti...
Andreas Müller
05:52 PM Revision 062d3624 (cdmlib): fix #9062 remove StatisticalMeasurementValue.value_old
Andreas Müller
05:52 PM Revision 2c2fb8fe (cdmlib): fix #9082 fix empty partials_start and partials_end handling
Andreas Müller
05:52 PM Revision 3bcb7fc8 (cdmlib): fix #9094 update TaxonNode.source from IdentifiableSource to Descript...
Andreas Müller
05:52 PM Revision f800c017 (cdmlib): ref #6581 move references to sources for NomenclaturalStatus, NameRel...
Andreas Müller
05:52 PM Revision 5b113fbe (cdmlib): add base functionality for model update 5.15.2 -> 5.18.0
Andreas Müller
05:52 PM Revision 5b34cfd9 (cdmlib): ref #9121 and ref #9124 add abbreviations to feature and add measurem...
Andreas Müller
05:52 PM Revision e68e45bd (cdmlib): fix DefaultTermInitializerTest in Suite
Andreas Müller
05:25 PM bug #9220 (Resolved): adapt dataportal to /registrationDTO now using identifier as query paramet...
Applied in changeset commit:cdm-dataportal|bd15166b63c77d27c4d30e3d9b881fc6f776b9a2. Andreas Kohlbecker
04:52 PM bug #9220 (Resolved): adapt dataportal to /registrationDTO now using identifier as query paramet...
A)
the registration page must be secured against [CVE-2007-0450](https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE...
Andreas Kohlbecker
05:25 PM Revision bd15166b (cdm-dataportal): fix #9220 dataportal adapted to registration controllers now ...
Andreas Kohlbecker
05:24 PM bug #9218 (Resolved): Change /registrationDTO/identifier/... signatures to use query parameters i...
Applied in changeset commit:cdmlib|ab4c6c1209ce78cbcce640a6dcbce1e4b1241195. Andreas Kohlbecker
04:14 PM bug #9218 (Resolved): Change /registrationDTO/identifier/... signatures to use query parameters i...
Using slashes, double slashes, back slashes in URLs has security implications (see [CVE-2007-0450](https://cve.mitre.... Andreas Kohlbecker
05:24 PM Revision ab4c6c12 (cdmlib): fix #9218 RegistrationController and RegistrationDTOController confor...
Andreas Kohlbecker
05:18 PM feature request #9110 (Feedback): Add additional informations to metadata table of cdmLight
Some of these new data seem to be very GfBio specific so I wonder if we should have them in the ordinary workflow or ... Andreas Müller
04:49 PM task #9219 (New): Revert: requests with %2F in URL are rejected by apache
remove the `AllowEncodedSlashes On` made for #7563 from apache configurations:
~~~
#
# NOTE: AllowEncodedSla...
Andreas Kohlbecker
03:24 PM Revision b68da265 (cdmlib): ref #9103 adding missing init strategy element to TaxonController
Andreas Kohlbecker
02:13 PM bug #9214: It is not possible to create a new schema in h2 database
Andreas Kohlbecker wrote:
> From reading the stack trace it seems as if you attempted to create the db from within t...
Katja Luther
01:00 PM bug #9214 (New): It is not possible to create a new schema in h2 database
Andreas Müller
12:59 PM bug #9214: It is not possible to create a new schema in h2 database
Andreas Kohlbecker wrote:
> From reading the stack trace it seems as if you attempted to create the db from within t...
Andreas Müller
09:52 AM bug #9214 (Feedback): It is not possible to create a new schema in h2 database
From reading the stack trace it seems as if you attempted to create the db from within the taxeditor datasources view... Andreas Kohlbecker
02:01 PM bug #9217 (New): swagger-ui slow in Cromium and freezes Firefox
Firefox can no longer render the swagger-ui due to massive performance problems, the Chromium browser succeeds render... Andreas Kohlbecker
01:42 PM feature request #9216 (New): Derivate tree view should merge branches to multiple root elements i...
Note: The root of non-cyclic directed graph of derivation events can either be a FieldUnit or a DerivedUnit
The fo...
Andreas Kohlbecker
01:31 PM feature request #7704: Dataportal specimen table should be able to show DerivedUnits without a Fi...
We discussed this topic in the EDIT standup today ... updating the ticket description with the outcome. Andreas Kohlbecker

09/04/2020

03:45 PM Revision 43cd5dcc (cdmlib): cleanup
Andreas Müller

09/03/2020

01:58 PM Revision f4935a73 (cdmlib): avoid multiple representation exception for source
Katja Luther
01:55 PM bug #9215: Drop down for empty rank does not work
please review Katja Luther
01:54 PM bug #9215 (Resolved): Drop down for empty rank does not work
Applied in changeset commit:taxeditor|cdd296d810fa3b1873c2442fadd65903f139b747. Katja Luther
01:48 PM bug #9215 (Resolved): Drop down for empty rank does not work
For an empty rank the combo box does not keep open to select a rank, it is necessary to enter a character to get a se... Katja Luther
01:54 PM Revision cdd296d8 (taxeditor): fix #9215: fire property change event only when something is selec...
Katja Luther
12:55 PM bug #8964: Improve label for homonym relationships
The reverse labels were still missing the change. This will come with v5.18 Andreas Müller
12:39 PM bug #8326 (Resolved): update labels for is blocking name and is isonym
Andreas Müller
12:02 PM bug #9124 (Resolved): Altitude feature should have [m] as measurement unit by default
Andreas Müller
10:06 AM bug #9214 (New): It is not possible to create a new schema in h2 database
Trying to create a schema in an emtpy h2 database results in an exception:
~~~
client error time : 2020-09-03...
Katja Luther
09:26 AM task #9120 (Resolved): Update script for flowering period supports temporal data
Andreas Müller
06:35 AM Revision 616de8d6 (cdmlib): fix compile error in DefaultTermInitializerTest
Andreas Müller
06:29 AM Revision 49a38456 (cdmlib): close csv reader for TermLoader
Andreas Müller
06:29 AM Revision da93d83b (cdmlib): ref #9211 add TODO on Classification.source
Andreas Müller
06:29 AM Revision f9390be8 (cdmlib): cleanup
Andreas Müller
06:29 AM Revision 6364fc79 (cdmlib): revert ignore for EditGeoServiceTest
Andreas Müller
06:20 AM feature request #9121 (Resolved): Add abbreviations to Feature
Andreas Müller

09/02/2020

06:11 PM bug #9213: specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists
The real problem for the missing specimen information in the portal for *Lactuca serriola* in the Cichoriae portal i... Andreas Kohlbecker
05:52 PM bug #9213: specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists
`taxon/85176c77-e4b6-4899-a08b-e257ab09350a/fieldUnitDTOs` seems to be broken due to problems in the method `FieldUni... Andreas Kohlbecker
05:08 PM bug #9213 (New): specimen views 'compressed table' and 'derivate tree' fail when no fieldunits ex...
Former Subject *portal/taxon/{taxon_uuid}/associatedFieldUnits and taxon/{uuid}/fieldUnitDTOs.json return empty pager... Andreas Kohlbecker
05:36 PM task #9062 (Resolved): Remove StatisticalMeasurementValue.value_old
Andreas Müller
05:27 PM Revision 815d2806 (cdmlib): ref #9212 logging more information in preparation for fixing this bug
Andreas Kohlbecker
03:59 PM Revision 761f281b (cdmlib): removing unused taglib dependencies
Andreas Kohlbecker
03:53 PM bug #9212 (New): swagger-ui invalid try out URLs under HTTPS
when accessing the swagger UI with HTTP scheme, the generated links are invalid since they have port 80 set explicit... Andreas Kohlbecker
03:13 PM task #9082 (Resolved): Update script for old empty Partials handling
Andreas Müller
02:27 PM task #9094 (Resolved): Update script to update TaxonNode.source from IdentifiableSource to Descri...
Andreas Müller
02:19 PM Revision 61b09b70 (cdmlib): cleanup
Andreas Müller
02:16 PM feature request #9211 (New): Handle source(s) for Classification
In #6581 we replaced reference links by sources (e.g. for SingleSourcedEntityBase). Classification is already Identif... Andreas Müller
01:39 PM Revision 700d5eee (taxeditor): ref #9204 remove solr dependencies from taxeditor.cdmlib
Andreas Müller
01:39 PM Revision 7acd5ac9 (taxeditor): ref #9204 update to commons-codec 1.15 in taxeditor.cdmlib
Andreas Müller
01:37 PM Revision 7894c090 (cdmlib): ref #9204 update to commons-codec 1.15 in cdmlib
Andreas Müller
10:01 AM Revision d7f577db (cdmlib): cleanup
Andreas Müller
08:48 AM bug #9143: Distribution data sources are missing if multiple distributions exist
Andreas Müller wrote:
> Andreas Müller wrote:
> > The problem is already described in #4366. However, there it is h...
Andreas Kohlbecker

09/01/2020

01:24 AM Revision b3a189f4 (cdmlib): cleanup
Andreas Müller
01:24 AM Revision 0afeecdf (cdmlib): ref #9204 revert removing xml-apis from cdmlib
Andreas Müller
01:08 AM Revision 0c3e6f86 (cdmlib): ref #9204 fix parent pom
Andreas Müller
01:08 AM Revision a589b634 (cdmlib): ref #9204 remove xml-apis from cdmlib as it is included in java8 (cont.)
Andreas Müller
12:56 AM Revision 0319ea6d (cdmlib): ref #9204 remove xml-apis from cdmlib as it is included in java8
Andreas Müller
12:29 AM Revision ec02ae73 (cdmlib): ref #9204 remove stax from cdmlib as it is included in java8
Andreas Müller
10:07 PM Revision fc24a0af (taxeditor): ref #9204 remove jaxb-api and javax.activation-api from taxeditor....
Andreas Müller
09:58 PM Revision 7cb734eb (cdmlib): ref #9204 replace jaxb-api by jakarta.xml.bind-api in cdmlib
Andreas Müller
09:12 PM Revision 6aef3b0e (taxeditor): ref #9204 remove odfdom and odfdom-java from taxeditor.cdmlib (if ...
Andreas Müller
09:08 PM Revision ca64773c (taxeditor): ref #9204 remove docx4j and dependencies from taxeditor.cdmlib
Andreas Müller
08:56 PM Revision 8905d679 (cdmlib): cleanup
Andreas Müller
08:56 PM Revision 61311054 (cdmlib): ref #9204 remove aspectjrt and some other cleanup related to aspectj
Andreas Müller
05:34 PM bug #9210 (Closed): invalid format string usage in MediaAutoInitializer
Andreas Kohlbecker
04:44 PM bug #9210 (Resolved): invalid format string usage in MediaAutoInitializer
Applied in changeset commit:cdmlib|0ff88328598e579703420b77a4d18435ae086348. Andreas Kohlbecker
04:30 PM bug #9210 (Closed): invalid format string usage in MediaAutoInitializer
The format string as being used in
~~~
String.format(" LEFT JOIN FETCH %s.representations LEFT JOIN FETCH %s.tit...
Andreas Kohlbecker
04:44 PM Revision 0ff88328 (cdmlib): fix #9210 adding indexed format specifiers and fixing hql issues
Andreas Kohlbecker
04:27 PM Revision d1bd1389 (cdmlib): ref #9204 update maven-resources-plugin to 2.7 (v3.x.x is available b...
Andreas Müller
04:12 PM Revision 2a910618 (cdmlib): ref #9204 preliminary revert maven-antrun-plugin version in cdmlib-model
Andreas Müller
04:10 PM feature request #8865: more external-links to be implemented
Hallo,
zu den External Links für Images sollten wir neben Google und flickr auf jeden Fall den folgenden aufnehm...
Andreas Kohlbecker
03:59 PM Revision cd1b1721 (cdmlib): ref #9204 update maven-jar-plugin to v 3.2.0
Andreas Müller
03:58 PM Revision 4f851db4 (cdmlib): ref #9204 move and comment hibernate3-maven-plugin for 001_cdm.ddl cr...
Andreas Müller
03:49 PM Revision cbb1ecbb (cdmlib): cleanup
Andreas Müller
03:48 PM Revision 6a052b69 (cdmlib): ref #9204fix version in maven-antrun-plugin
Andreas Müller
03:35 PM Revision c643903d (cdmlib): ref #9204 update maven-antrun-plugin to v 3.0.0
Andreas Müller
03:33 PM Revision 6e0b3ca8 (cdmlib): update maven-surefire-plugin to latest version
Andreas Müller
03:31 PM Revision b4349f25 (cdmlib): cleanup
Andreas Müller
03:18 PM Revision e0b7f901 (cdmlib): ref #9204 upgrade osgi.core to v7 and upgrade maven-bundle-plugin to ...
Andreas Müller
02:33 PM task #9201: Titelcache creation for nested collections - DISCUSS
Example in Test-PhycoBank
Abas vulgaris
Given A. Kohlbecker has stored his samples at two places:
"Coll. Kohlbec...
Wolf-Henning Kusber
02:18 PM task #8928 (Closed): Swap menu entries for specimen bulk editors
Katja Luther
12:36 PM task #8928 (Resolved): Swap menu entries for specimen bulk editors
I think this is fixed. I already reviewed and it looks fine. I also attached the commit to ticket. So please feel fre... Andreas Müller
02:14 PM Revision e290270f (cdmlib): cleanup
Andreas Müller
02:13 PM Revision c3149512 (cdmlib): ref #9204 try to remove org.ecipse:osgi from cdmlib-service and upgra...
Andreas Müller
01:50 PM feature request #9209 (New): name page, registration page: show annotations for names and fieldunits

Beispiel: Etymology & Editorial Note zum korrigierten Namen Entomoneis annagodhei:
* https://www.phycobank.or...
Andreas Kohlbecker
01:19 PM Revision cef595a2 (cdmlib): ref #9204 remove ooxml-schemas-1.4 from cdmlib-io (keep only poi-ooxm...
Andreas Müller
09:52 AM Revision f06abdc2 (taxeditor): ref #9204 revert removing dao packages from taxeditor.cdmlib MANIF...
Andreas Müller

08/31/2020

12:25 AM Revision 6fd96475 (taxeditor): cleanup
Andreas Müller
12:25 AM Revision 180bb38e (taxeditor): ref #9204 revert removing cdmlib-persistencefrom MANIFEST.MF in ta...
Andreas Müller
12:12 AM Revision 7933db8c (taxeditor): ref #9204 remove persistence.dao from MANIFEST.MF export in taxedi...
Andreas Müller
12:11 AM Revision c8d6f9c4 (taxeditor): cleanup
Andreas Müller
11:44 PM Revision c60393ed (cdmlib): Revert "ref #6581 try to fix exception in MatchStrategyConfigurator"
This reverts commit e807e4380fddd21b2ac521057462a0d03cab298f. Andreas Müller
11:41 PM Revision e807e438 (cdmlib): ref #6581 try to fix exception in MatchStrategyConfigurator
Andreas Müller
11:40 PM Revision 6562ccfe (cdmlib): try to fix exception in MatchStrategyConfigurator
Andreas Müller
11:40 PM Revision 31fa3b33 (cdmlib): cleanup
Andreas Müller
10:53 PM Revision 4797cf24 (taxeditor): ref #9204 remove httpmime from taxeditor.cdmlib (cont.)
Andreas Müller
10:49 PM Revision daa8053d (taxeditor): ref #9204 remove httpmime from taxeditor.cdmlib
Andreas Müller
09:37 PM Revision 54c84219 (taxeditor): ref #9204 remove snappy-java from taxeditor.cdmlib
Andreas Müller
09:35 PM Revision 2878fcf8 (taxeditor): ref #9204 remove servlet-api from taxeditor.cdmlib
Andreas Müller
09:25 PM Revision 78f978ad (cdmlib): add KeyStatement to PermissionClass
Andreas Müller
09:20 PM Revision cfc91fe1 (taxeditor): ref #9204 remove hibernate dependency dom4j from taxeditor.cdmlib
Andreas Müller
09:14 PM Revision 82a0a479 (taxeditor): ref #9204 remove jena dependencies from taxeditor.cdmlib
Andreas Müller
09:13 PM Revision bef0e02c (taxeditor): ref #9204 remove springfox/swagger dependencies from taxeditor.cdmlib
Andreas Müller
08:46 PM Revision 273e3a79 (taxeditor): ref #9204 remove mchange-commons-java-0.2.11 from taxeditor.cdmlib
Andreas Müller
07:49 PM Revision 07c450e5 (taxeditor): ref #9204 remove remaining jaxb dependencies from taxeditor.cdmlib...
Andreas Müller
07:48 PM Revision 21bac054 (taxeditor): ref #9204 remove paranamer-2.3 from taxeditor.cdmlib
Andreas Müller
07:41 PM Revision a3d55d2f (taxeditor): ref #9204 remove cdmlib.print dependency Saxon from taxeditor.cdml...
Andreas Müller
07:34 PM Revision 295b39a7 (cdmlib): ref #9204 update jaxb to version 2.3.3 (fix compile error with ZipWri...
Andreas Müller
07:20 PM Revision e482fcd5 (cdmlib): ref #9204 update jaxb to version 2.3.3
Andreas Müller
07:16 PM Revision 065be26f (cdmlib): ceanup
Andreas Müller
06:07 PM Revision 9f6e9080 (taxeditor): ref #9204 remove remaining jaxb dependencies from taxeditor.cdmlib...
Andreas Müller
06:01 PM Revision e2f5f1a3 (cdmlib): preliminary ignore GeoService tests
Andreas Müller
06:01 PM Revision b1d1fdc5 (cdmlib): cleanup
Andreas Müller
05:50 PM Revision f3f719db (taxeditor): ref #9204 taglibs libraries from taxeditor.cdmlib
Andreas Müller
05:44 PM Revision 0c3df88e (taxeditor): ref #9204 move SQL Server and Sybase driver to taxeditor.webapp on...
Andreas Müller
05:38 PM Revision 88ef05d6 (cdmlib): ref #9204 update sqlserver driver to new and maven available version ...
Andreas Müller
05:35 PM Revision a07d1098 (cdmlib): ref #9204 update sqlserver driver to new and maven available version ...
Andreas Müller
05:07 PM Revision 1e470560 (taxeditor): ref #9204 remove hibernate dependency jandex from taxeditor.cdmlib
Andreas Müller
05:04 PM Revision f56b92f3 (cdmlib): unignore geoservice tests
Andreas Müller
05:03 PM Revision 1e434840 (cdmlib): preliminary ignore 2 mapservice tests
Andreas Müller
04:54 PM Revision 305734b8 (taxeditor): ref #9204 reattach jboss-transaction-api_xxx_spec to taxeditor.cdm...
Andreas Müller
04:25 PM Revision b92a4277 (taxeditor): ref #9204 remove objenesis-1.2 from taxeditor.cdmlib (easymock dep...
Andreas Müller
04:24 PM Revision 6c5fb23d (taxeditor): ref #9204 remove jboss-transaction-api_1.1_spec-1.0.0.Final from t...
Andreas Müller
04:14 PM Revision 514578f9 (cdmlib): ref #9204 partly revert removing of hibernate-validator dependencies ...
Andreas Müller
03:30 PM Revision eb4c31a8 (taxeditor): ref #9204 remove remaining jaxb dependencies from taxeditor.cdmlib
Andreas Müller
03:30 PM Revision 17aae9c1 (taxeditor): ref #9204 remove hibernate-validator-cdi from taxeditor.cdmlib
Andreas Müller
02:53 PM Revision 11ac8542 (cdmlib): cleanup
Andreas Müller
02:47 PM Revision fc718568 (cdmlib): ref #9204 remove redundant commons-io dependencies (and doc)
Andreas Müller
02:25 PM Revision 360e62dd (cdmlib): ref #9204 remove fixed avalon-framework version
Andreas Müller
01:52 PM Revision 63e093ab (taxeditor): move specimen tree view above list view in menu
Katja Luther
01:51 PM Revision 7d984018 (taxeditor): ref #9204 remove javax.el-2.2.6 from taxeditor.cdmlib
Andreas Müller
01:44 PM Revision 85eda11e (taxeditor): ref #9204 remove jakarta-regexp-1.4.jar from taxeditor.cdmlib
Andreas Müller
01:37 PM Revision 8a87fba1 (taxeditor): cleanup
Andreas Müller
01:37 PM Revision 8d59e5ba (taxeditor): ref #9204 remove FastInfoset-1.2.13.jar from taxeditor.cdmlib
Andreas Müller
01:24 PM Revision 2d633a9d (taxeditor): ref #9204 remove guava-19.0.jar from taxeditor.cdmlib
Andreas Müller
01:20 PM Revision 090d5fde (taxeditor): ref #9204 remove google-api-translate-java-0.92.jar from taxeditor...
Andreas Müller
01:19 PM Revision 24048733 (taxeditor): ref #9204 move fop to taxeditor.print and upgrade version (cont.)
Andreas Müller
12:55 PM Revision 0c853ce7 (cdmlib): fix MobotOpenUrlServiceWrapperTest by adapting expected result
Andreas Müller
12:54 PM Revision 87a2c7e2 (cdmlib): ref #9204 remove exclusions for fop (as not valid for the new version...
Andreas Müller
12:53 PM Revision e4785bf4 (cdmlib): cleanup
Andreas Müller
12:37 PM Revision 38af6cd2 (taxeditor): ref #9204 move fop to taxeditor.print and upgrade version
Andreas Müller
12:12 PM Revision 6ab98a2c (cdmlib): ref #8978 adapt StructuredDescriptionAggregationTest to BigDecimal (r...
Andreas Müller
11:55 AM Revision b55f140b (cdmlib): add DescriptiveDataSet_TaxonNode to ClearDBDataSet files
Andreas Müller
 

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