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From 09/19/2017 to 10/18/2017

10/17/2017

09:42 PM bug #7021: CREATE permission not sufficient to save new TaxonName entity
This problem is caused by the cache fields which are empty at the time when the merge happens. In turn of the flush t... Andreas Kohlbecker
05:57 PM bug #7021 (New): CREATE permission not sufficient to save new TaxonName entity
Saving a newly created name entity fails if the authenticated use is only having the `TAXONNAME.[CREATE,READ]` author... Andreas Kohlbecker
04:29 PM feature request #6999 (Resolved): RegistrationUI: Enable, disable editor buttons according to th...
Applied in changeset commit:cdm-vaadin|1a38cf2c10b574f4d0d752973060a56f0f68c9ff. Andreas Kohlbecker
04:29 PM Revision 1a38cf2c (cdm-vaadin): fix #6999 enablement of type and name editor buttons in workingse...
- more robust RegistrationRequiredDataInserter
- adding SPECIMENOROBSERVATIONBASE authority default groups
- ...
Andreas Kohlbecker
03:53 PM feature request #7018 (Resolved): implement a CdmPermissionVoter and default authorities for Spec...
Applied in changeset commit:cdmlib|88249c56f555abbd8f9e8b83e2a336dd8a8027b9. Andreas Kohlbecker
03:53 PM Revision 88249c56 (cdmlib): fix #7018 ref #7020 simple permission voter and authorities for Speci...
Andreas Kohlbecker
03:50 PM feature request #7020 (New): Allow SpecimenOrObservationBaseVoter to make futher voting decision ...

DerivedUnits and DerivationEvents can form graphs with multiple roots.
~~~
fuA -- duA
\
...
Andreas Kohlbecker
03:22 PM Revision 901fa7c6 (cdmlib): abcd import new taxa to new classification if configured
Katja Luther
03:14 PM Revision c2f87993 (taxeditor): ref #7018 adapting taxeditor to changes in cdm permission classes
Andreas Kohlbecker
03:06 PM Revision c784af1b (taxeditor): changes in specimen import view
Katja Luther
02:33 PM Revision 236ef965 (taxeditor): smaller changes in db preference biocase provider list
Katja Luther
01:40 PM Revision 85028f14 (cdmlib): abcd import: handle empty collecting areas and fix used classificatio...
Katja Luther
01:17 PM feature request #7019 (New): sort import menu
ist es möglich, die zur Verfügung stehenden Importe noch ein bisschen zu sortieren?

Eine Sortierung könnte un...
Katja Luther
12:48 PM feature request #6908 (Resolved): Migrate polytomous key module
added the menu entry Patrick Plitzner
12:48 PM Revision 371cab7b (taxeditor): ref #6908 Add polytomous key editor to "Show view" menu
Patrick Plitzner

10/16/2017

06:27 PM Revision ee22b6e7 (taxeditor): Fix potential stack overflow
Patrick Plitzner
06:20 PM feature request #6921 (Resolved): Migrate data import views
oops, some of the menu item handlers where shifted in the wrong order
Now it should work
Patrick Plitzner
01:59 PM feature request #6921: Migrate data import views
clicking on the tcs import menu item has no effect. Katja Luther
01:43 PM feature request #6921: Migrate data import views
for the taxonnavigator menu the entry for RIS points to the SDD import Katja Luther
01:41 PM feature request #6921 (Feedback): Migrate data import views
now there are different menu entries for the taxonnavigator and the main menu: in taxonnavigator there is Import Spec... Katja Luther
06:19 PM Revision f123b353 (taxeditor): ref #6921 Fix menu item commands
Patrick Plitzner
05:57 PM Revision b4730c9a (taxeditor): Fix selection handling for name editor
Patrick Plitzner
05:20 PM Revision 8c97b25e (cdmlib): ref #7018 ref #7016 turning the not needed TypeDesignationVoter into ...
Andreas Kohlbecker
04:09 PM feature request #6974 (Resolved): improve the io wizards
Applied in changeset commit:taxeditor|273498506dd099b8d5b6c8b97a4dc6e10221f7df. Katja Luther
04:06 PM Revision 27349850 (taxeditor): fix #6974: move the configurator page behind the file selection page
Katja Luther
04:05 PM Revision 940769b9 (taxeditor): ref #6974: move the configurator page behind the file selection page
Katja Luther
04:05 PM Revision d14347e9 (cdmlib): ref #7018 ref #7016 turning the not needed TypeDesignationVoter into ...
Andreas Kohlbecker
03:54 PM Revision f67d24f7 (cdmlib): remove override of saveOrUpdate
Katja Luther
03:49 PM feature request #7018 (Resolved): implement a CdmPermissionVoter and default authorities for Spec...
SpecimenOrObservationBase need to be protected by a SpecimenOrObservationBaseVoter which evaluates CRUD permissions ... Andreas Kohlbecker
03:48 PM Revision 940f9836 (taxeditor): Fix new entity wizard
Patrick Plitzner
03:47 PM feature request #7016 (Rejected): implement a CdmPermissionVoter for TypeDesignations
permissions for TypeDesignations are not really needed. It is completely sufficient to have permissions on `TaxonName... Andreas Kohlbecker
02:01 PM Revision 2d137e2c (taxeditor): ref #6913 Remove dependency to WorkbenchWindow from utility class
Patrick Plitzner
02:01 PM Revision 81a7cfb2 (taxeditor): ref #6925 Migrate getShell utility method
Patrick Plitzner
01:57 PM feature request #7008 (Feedback): Migrate export wizards
the jaxb export wizard and sdd export wizard has the next button activated, but there is no additional page any more.... Katja Luther
01:37 PM feature request #7008 (Resolved): Migrate export wizards
Katja Luther
12:50 PM feature request #7008 (Feedback): Migrate export wizards
Katja Luther
01:32 PM feature request #7006 (Closed): Migrate preferences
it takes quiet a long time to open the preferences, but it seems to work.
Katja Luther
01:32 PM Revision 06699fe1 (taxeditor): avoid NPE in namedetails preference and specimen preference page
Katja Luther
12:36 PM Revision 417a8287 (cdmlib): move initialize to constructor and small changes in cdmlightexport
Katja Luther
11:03 AM Revision c7624e9e (taxeditor): merge
Katja Luther
10:58 AM Revision 5672e795 (taxeditor): missing translations
Katja Luther

10/15/2017

08:24 PM Revision 6393027d (taxeditor): ref #6907, #6597 Refresh details view after changing desc element
Patrick Plitzner
03:22 PM Revision b5b429af (taxeditor): ref #6925 Inject context into operations to allow sync/async execu...
Patrick Plitzner
03:21 PM bug #7017 (New): Rendering of details view for common name description element take too long
Patrick Plitzner

10/13/2017

06:16 PM Revision 126347d2 (cdmlib): ref #7016 implementing TypeDesignationVoter and more robust permissions:
- avoiding string based cdm authorities
- full test set for CdmPermissionClass
Andreas Kohlbecker
05:44 PM Revision 6c7f9981 (cdmlib): removing offending import of javafx
Andreas Kohlbecker
04:52 PM Revision f0aad502 (cdmlib): refactoring CdmPermissionEvaluator and CdmAuthoritiy for a more compr...
Andreas Kohlbecker
03:27 PM feature request #7016 (Rejected): implement a CdmPermissionVoter for TypeDesignations
TypeDesignations need to be protected by a TypeDesignationsVoter which evaluates CRUD permissions given to users or ... Andreas Kohlbecker
03:03 PM Revision 56fbcef9 (taxeditor): ref #6913 Remove getActivePage() method
Patrick Plitzner
02:02 PM Revision 0fa0610e (taxeditor): ref #6913 Remove org.eclipse.ui dependency from AbstractUtility
- fix changing type of description element Patrick Plitzner
12:05 PM Revision 972ecc88 (taxeditor): ref #6913 Remove org.eclipse.ui dependency from AbstractUtility
- inject IEclipseContext into CdmFactory Patrick Plitzner
11:24 AM Revision 22f2d1a4 (taxeditor): ref #6913 Remove org.eclipse.ui dependency from NavigationUtil
Patrick Plitzner
09:06 AM feature request #7015 (New): Migrate recent menu item
Patrick Plitzner
09:03 AM Revision bc330e88 (taxeditor): ref #6925 Refactor NavigationUtil.isDirty()
Patrick Plitzner
08:57 AM Revision 71b7253e (taxeditor): ref #6925 Rename utility getter methods
Patrick Plitzner
07:00 AM Revision cf2f4360 (taxeditor): ref #6925 Migrate getActivePart()
Patrick Plitzner
06:53 AM Revision ac20911d (taxeditor): Fix potential NPE
Patrick Plitzner

10/12/2017

07:29 PM Revision 243e2b8e (taxeditor): ref #6913 Remove e3 dependencies from AbstractUtility
Patrick Plitzner
07:00 PM Revision 9e9012bf (taxeditor): temporary fix for jenkins build
Patrick Plitzner
05:51 PM Revision cb043042 (taxeditor): ref #6598 Add missing command
Patrick Plitzner
05:36 PM Revision 68061e15 (taxeditor): ref #6925 Set active part in utility class
Patrick Plitzner
04:16 PM Revision 5964be2c (taxeditor): ref #6925 Inject context into details and supplemental view
Patrick Plitzner
03:13 PM feature request #6903 (In Progress): Requirements for checklisteditor of the German states
Andreas Müller
01:22 PM Revision fae0ba51 (taxeditor): ref #6568 Migrate taxonomic perspective
Patrick Plitzner
11:51 AM Revision 2f351a88 (taxeditor): ref #6925 Refactor e3 dependencies during connect
Patrick Plitzner
10:01 AM Revision bb18021b (taxeditor): fix setPublishFlagForSubtree in editor
Katja Luther
09:21 AM Revision b0a7243b (taxeditor): ref #6913 Remove e3 service from name editor
Patrick Plitzner
09:06 AM Revision 0cc7baed (taxeditor): Merge branch 'develop' into e4complete
Patrick Plitzner
08:49 AM Revision e15965f4 (taxeditor): ref #6925 Refactor shell and partService acc for navigator and cdm...
Patrick Plitzner

10/11/2017

08:34 PM Revision 68b2628a (cdm-vaadin): ref #6999 fixing permission evaluation and adding debug button to...
Andreas Kohlbecker
08:25 PM Revision 5613f613 (cdm-vaadin): ref #6852 adding permission group 'Submitter'
Andreas Kohlbecker
04:45 PM Revision 60e8c5d1 (cdmlib): cleanup
Andreas Müller
04:45 PM Revision b439b430 (cdmlib): improve toString for User and Usergroup
Andreas Müller
04:03 PM feature request #6908: Migrate polytomous key module
Andreas Müller wrote:
> The view is still missing in the show view menu (should be in topmost group together with ta...
Andreas Müller
03:40 PM feature request #6908 (Feedback): Migrate polytomous key module
The view is still missing in the show view menu (should be in topmost group together with taxon navigator which is on... Andreas Müller
04:00 PM Revision 0348fb62 (taxeditor): Adapt menu entry label for Authorities
Andreas Müller
03:47 PM feature request #7011: Migrate group authority editor
D&D also does not work for nodes in taxonnavigator, maybe this has to be migrated first. Katja Luther
03:32 PM feature request #7011 (Feedback): Migrate group authority editor
D&D does not yet work. E.g. from Tax Navigator.
Andreas Müller
02:48 PM feature request #6989 (Feedback): Migrate concept graph view
Andreas Müller
02:46 PM feature request #6989: Migrate concept graph view
No graph is shown on my machine. I testen on testserver/rem_conf_am => Testklass - Sabularia Small.
The view shows...
Andreas Müller
02:32 PM feature request #6933 (Closed): Add possibility to export only families or other part of the tree...
Andreas Müller
01:45 PM Revision 73129ab9 (cdm-vaadin): ref #6999 protecting type and name buttons
Andreas Kohlbecker
12:29 PM Revision ed3a9ca0 (taxeditor): minor
Katja Luther
11:58 AM Revision 5d06f4ac (taxeditor): Merge branch 'develop' into e4complete
# Conflicts:
# eu.etaxonomy.taxeditor.navigation/fragment.e4xmi
Patrick Plitzner
10:54 AM feature request #6569 (Closed): Remove unused application model from taxeditor.application
Patrick Plitzner
10:52 AM feature request #6569 (Resolved): Remove unused application model from taxeditor.application
Applied in changeset commit:taxeditor|fa8cce45a6f3b17b03bd7f50e3a5b3c0e9a1d54a. Patrick Plitzner
10:52 AM Revision fa8cce45 (taxeditor): fix #6569, ref #6925 Define e4 product
- move workbench fragments to application model in
taxeditor.application
Patrick Plitzner
10:48 AM Revision 87cf7b6b (taxeditor): small changed in RemotingCdmOperation
Katja Luther
10:36 AM Revision 1a6c4078 (taxeditor): enable setPublishFlagForSubtree in edior
Katja Luther
08:32 AM Revision 2f55de7d (cdm-dataportal): harmonizing class attributes of typedesignations
Andreas Kohlbecker

10/10/2017

12:03 AM feature request #6815 (Closed): OriginalSource idNamespace + idInSource default separator should...
This seems to work Andreas Müller
12:02 AM bug #6982: OriginalSource idNamespace + idInSource separator must be configurable
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> >Regarding configurability: A simple default character would no...
Andreas Müller
02:58 PM Revision f9d460d5 (taxeditor): ref #6622, #6598 Migrate "New" and connect menus
Patrick Plitzner
02:55 PM Revision 0fcd5deb (cdm-dataportal): fixing broken test after using cdm entity class attribute
Andreas Kohlbecker
02:52 PM Revision 6d222feb (cdmlib): CdmSimpleNameTypeFilter to allow find CdmTypes by simple name
Andreas Kohlbecker
01:11 PM Revision f6c0ab3d (taxeditor): more changes for name details configuration with allow ovverride
Katja Luther
12:41 PM Revision ae37df1c (taxeditor): adaption to renaming of secundumForSubtreeConfigurator
Katja Luther
12:27 PM Revision eb8122a2 (cdmlib): remove subTreeConfigurator and updater from io package
Katja Luther
12:11 PM Revision 53217642 (cdmlib): smaller changes in ForSubtreeConfigurator
Katja Luther
12:01 PM Revision bd424526 (cdmlib): smaller changes in ForSubtreeConfigurator
Katja Luther
11:03 AM bug #7013: NonUniqueObjectException for setSecundumReferenceForSubtree
This isexception does not appear if it is called without the monitoring thread. As a workaround the monitoring thread... Katja Luther
11:00 AM bug #7013 (New): NonUniqueObjectException for setSecundumReferenceForSubtree
The following exception occurs for SetSecundumReferenceForSubtree.
~~~ text
java.lang.IllegalStateException: or...
Katja Luther
10:59 AM Revision 03583179 (taxeditor): ref #6913 Remove e3 taxon navigator
Patrick Plitzner
10:57 AM Revision 50600204 (taxeditor): setSecundum for subtree throws Exception with monitor, as workarou...
Katja Luther
10:45 AM Revision 46a52cbd (taxeditor): ref #6913 Remove e3 cdm view parts and cdm viewer utils
Patrick Plitzner
10:24 AM Revision 7450edc8 (taxeditor): ref #6913 Remove e3 referencing objects view
Patrick Plitzner
10:24 AM Revision e9c43a9d (taxeditor): ref #6913 Remove e3 concept graph view
Patrick Plitzner
10:23 AM Revision f3c95901 (taxeditor): ref #6913 Remove e3 data source view
Patrick Plitzner
10:22 AM Revision 07c004e9 (taxeditor): ref #6913 Remove e3 data import views
Patrick Plitzner
10:19 AM Revision eb6d47a9 (taxeditor): ref #6913 Remove e3 poly key view
Patrick Plitzner
10:15 AM Revision 741ce465 (taxeditor): ref #6913 Remove e3 pherogram view
Patrick Plitzner
10:14 AM Revision 1336e9c4 (taxeditor): ref #6913 Remove test specimen import view
Patrick Plitzner
10:04 AM Revision ca1a0613 (taxeditor): ref #6913 Remove e3 search result view
Patrick Plitzner

10/09/2017

07:09 PM Revision 35f389ec (taxeditor): ref #6913 Remove e3 checklist editor
Patrick Plitzner
07:05 PM Revision b85cc866 (taxeditor): ref #6913 Remove e3 alignment editor
Patrick Plitzner
06:53 PM Revision 500dfe44 (taxeditor): ref #6913 Remove e3 data import editors
Patrick Plitzner
06:51 PM Revision 830816ee (taxeditor): ref #6913 Remove e3 polytomous editors
Patrick Plitzner
06:46 PM Revision 0bffdf3c (taxeditor): ref #6913 Remove e3 PolytomousKeyListEditor
Patrick Plitzner
06:45 PM Revision 7954e837 (taxeditor): ref #6913 Remove e3 CdmAuthority editor
Patrick Plitzner
06:43 PM Revision 7638b20a (taxeditor): ref #6913 Remove e3 annotated line editor
Patrick Plitzner
06:29 PM Revision 3a5db1f1 (taxeditor): ref #6913 Remove e3 term editor
Patrick Plitzner
06:28 PM Revision 6ab007a9 (taxeditor): ref #6913 Remove e3 descriptive and uses view
Patrick Plitzner
06:26 PM Revision e20cdc31 (taxeditor): ref #6913 Remove e3 details view and supplemental data view
Patrick Plitzner
06:21 PM Revision 0c990ba5 (taxeditor): ref #6913 Remove e3 BulkEditor and handlers
Patrick Plitzner
06:09 PM Revision ae0d5db6 (taxeditor): Remove system out message
Patrick Plitzner
06:03 PM Revision a8fc75d8 (taxeditor): ref #6925 Remove IEditorInput implementations
Patrick Plitzner
04:26 PM feature request #7011 (Resolved): Migrate group authority editor
Applied in changeset commit:taxeditor|d0eb8b9f48b808de39dcee2cc0245b409ef24c9d. Patrick Plitzner
04:25 PM feature request #7011 (Feedback): Migrate group authority editor
Patrick Plitzner
04:26 PM Revision d0eb8b9f (taxeditor): fix #7011 Migrate group authority editor
Patrick Plitzner
03:46 PM feature request #7010 (New): Adapt handlers for multiple selection in e4 views
Patrick Plitzner
03:29 PM feature request #7009 (New): Replace part descriptor IDs in open handler with AppModel constants
Patrick Plitzner
10:16 AM feature request #6933 (Resolved): Add possibility to export only families or other part of the tr...
the two remaining issues are fixed with the last commit. Katja Luther
10:06 AM Revision f90b8808 (taxeditor): minor changes in l10n files and ExportToFileWizardPage
Katja Luther
06:45 AM Revision 75f222cf (cdmlib): cleanup
Andreas Müller
06:27 AM Revision 4c72fcbd (taxeditor): cleanup
Andreas Müller

10/06/2017

04:48 PM Revision bc44ad79 (taxeditor): ref #6913 Remove e3 plugin extensions
Patrick Plitzner
04:36 PM Revision 16a96c7c (taxeditor): Fix possible NPE endless loop
Patrick Plitzner
04:34 PM feature request #7008 (Resolved): Migrate export wizards
Patrick Plitzner
03:18 PM feature request #7008 (Feedback): Migrate export wizards
* ~~CDM light~~
* ~~CSV~~
* ~~CSV_NAME~~
* ~~CSV_PRINT~~
* ~~DwC-A~~
* ~~JAXB~~
* ~~SDD~~
Patrick Plitzner
04:29 PM Revision fd907381 (taxeditor): ref #7008 Migrate CSV export
Patrick Plitzner
04:29 PM Revision 025d7862 (taxeditor): ref #7005 Refactor DI annotations
Patrick Plitzner
04:29 PM Revision d018d823 (taxeditor): ref #7008 Migrate export wizards
- add menu items to navigator context menu Patrick Plitzner
02:33 PM Revision 59e7cc59 (taxeditor): smaller changes for simple name details configuration
Katja Luther
01:51 PM feature request #7006 (Resolved): Migrate preferences
Patrick Plitzner
01:47 PM Revision 5ed9beae (taxeditor): Avoid redundant rendering for views FIX
Patrick Plitzner
01:38 PM Revision fa63dd05 (taxeditor): Avoid redundant rendering for views
Patrick Plitzner
01:07 PM Revision 94d5f220 (taxeditor): ref #7007 Migrate bulk editor preference pages
Patrick Plitzner
12:27 PM Revision e5f892b4 (taxeditor): refactor namedetails preference to allow override
Katja Luther
12:08 PM Revision 4de91645 (taxeditor): ref #7005 Refactor package structure
Patrick Plitzner
12:08 PM Revision 008ebe8f (taxeditor): ref #7006 Migrate store preferences
Patrick Plitzner
12:08 PM Revision dbb4a896 (taxeditor): ref #7006 Fix typo
Patrick Plitzner
12:08 PM Revision f4888ff9 (taxeditor): ref #7007 Migrate TermManager memento to preference store
Patrick Plitzner
12:07 PM feature request #7007 (New): Migrate IMemento functionality
Patrick:
"offensichtlich haben wir unsere Settings/Preferences/Mementos jetzt aktuell noch etwas mehr verteilt. Da...
Patrick Plitzner
10:47 AM Revision d0184a74 (cdmlib): add cdmPreference showLifeForm
Katja Luther
10:09 AM Revision 256fbc69 (taxeditor): refactor db preferences for specimen and observations
Katja Luther

10/05/2017

03:16 PM feature request #7006 (Closed): Migrate preferences
This can be done with a copy of the plugin provided by OPCoach (https://github.com/opcoach/e4Preferences).
This mi...
Patrick Plitzner
02:47 PM Revision 85e6ddf4 (taxeditor): ref #7005 Remove e3 import command
Patrick Plitzner
02:46 PM feature request #7005 (Resolved): Migrate import wizards
Patrick Plitzner
07:40 AM feature request #7005 (Resolved): Migrate import wizards
* ~~BioCASE/GBIF~~
* ~~ABCD~~
* ~~Excel Distribution Data Update~~
* ~~Excel Normal Explicit Taxa~~
* ~~RIS Refer...
Patrick Plitzner
02:46 PM Revision d23b24f7 (taxeditor): ref #7005 Add import menu items to navigator
Patrick Plitzner
01:56 PM Revision 3969b39a (taxeditor): ref #7005 Remove commented code
Patrick Plitzner
01:56 PM Revision 434b59e1 (taxeditor): ref #7005 Migrate Tcs import
Patrick Plitzner
01:38 PM Revision 192a6302 (taxeditor): ref #7005 Migrate Excel specimen import
- refactor super class constructor Patrick Plitzner
11:24 AM Revision 786c2c81 (taxeditor): ref #7005 Migrate SDD import
Patrick Plitzner
11:16 AM Revision 1e333358 (taxeditor): ref #7005 Migrate RIS import
Patrick Plitzner
11:06 AM Revision c98e5a0b (taxeditor): ref #7005 Migrate excel normal explicit taxon import
Patrick Plitzner
10:00 AM Revision 5a1b054d (taxeditor): ref #7005 Add selection to constructor
Patrick Plitzner
09:52 AM Revision e9afb611 (taxeditor): ref #7005 i18n + remove e3 Excel distribution wizard
Patrick Plitzner
09:40 AM Revision 65a3658c (taxeditor): ref #7005 Migrate Excel distribution import
Patrick Plitzner
09:20 AM Revision 7b78edc5 (taxeditor): ref #7005 Migrate ABCD import
Patrick Plitzner

10/04/2017

06:25 PM feature request #6921: Migrate data import views
For opening the import wizards I added an extra menu because these wizard do not use the org.eclipse.ui.importWizards... Patrick Plitzner
06:20 PM feature request #6921 (Resolved): Migrate data import views
Applied in changeset commit:taxeditor|1a7f5070bc2ce3588c7255c1ee412e00f1b74582. Patrick Plitzner
06:19 PM Revision 1a7f5070 (taxeditor): fix #6921 Migrate ABCD and GBIF import views
Patrick Plitzner
03:40 PM Revision 43e9ee3f (taxeditor): ref #6910 Fix "Open in referencing objects view" menu visibility
- clean up plugin.xml files Patrick Plitzner
01:40 PM bug #7000 (Closed): clicking in specimen details of bulk editor results in an empty details view
works now Katja Luther
12:04 PM bug #7000 (Resolved): clicking in specimen details of bulk editor results in an empty details view
Applied in changeset commit:taxeditor|5221978cf52b633e3d5e2adf7055133536863903. Patrick Plitzner
09:36 AM bug #7000 (Closed): clicking in specimen details of bulk editor results in an empty details view
the details view of specimen bulk editor disappears when clicking on the scrollbar or in one of the fields Katja Luther
12:48 PM feature request #6902 (Resolved): Migrate molecular module
Patrick Plitzner
12:45 PM Revision 77416839 (taxeditor): Merge branch 'develop' into LibrAlign
Patrick Plitzner
12:45 PM Revision b0acbdbb (taxeditor): ref #6902 Fix visibility of menu items
Patrick Plitzner
12:04 PM Revision 5221978c (taxeditor): fix #7000 Enable details view editing for bulke editor
Patrick Plitzner
11:54 AM bug #7002: Delete of contig sequence not possible
Katja Luther wrote:
> we decided that it is not possible to delete media from media specimen and from other places w...
Patrick Plitzner
11:39 AM bug #7002: Delete of contig sequence not possible
we decided that it is not possible to delete media from media specimen and from other places where they are directly ... Katja Luther
10:59 AM bug #7002 (New): Delete of contig sequence not possible
Deletion in specimen hierarchy editor is not possible because of the following message.
~~~
An object of eu.eta...
Patrick Plitzner
11:49 AM Revision 6cab007e (taxeditor): add missing Preference Key
Katja Luther
11:44 AM Revision c7dd4e36 (taxeditor): ref #6949 Fix potential NPE
Patrick Plitzner
11:34 AM feature request #7004 (New): Adapt save option in specimen hierarchy editor to bulk editor
Andreas:
die erneute Suche im Specimen Tree Editor, nachdem man etwas editiert hat, erlaubt weiterhin nur Save ode...
Patrick Plitzner
11:22 AM bug #7003 (New): endless loop with IllegalArgumentException when no active conversation is found
This happens sometimes as is related to the mix of e3 and e4 views.
If this happens you can only force quit the taxe...
Patrick Plitzner
10:58 AM feature request #7001 (New): Show date and/or version-number on taxeditor download site
The date and/or version number of the taxeditor stable release to be downloaded from https://cybertaxonomy.eu/downloa... Fabian Reimeier
10:57 AM Revision 9e5747be (taxeditor): add allow local override to database preferences
Katja Luther

09/29/2017

03:20 PM Revision 960d1a20 (taxeditor): ref #6902 migrate alignment editor and pherogram view
Patrick Plitzner
03:11 PM Revision c9af7679 (cdm-vaadin): ref #6999 protecting reference edit buttons
Andreas Kohlbecker
02:31 PM feature request #6999 (Resolved): RegistrationUI: Enable, disable editor buttons according to th...
Andreas Kohlbecker
01:52 PM bug #6998 (Feedback): Potential NPE wit endless loop when switching type of description element i...
the NPE is now fixed but the descriptionElement details view does not update after switching to textData.
closing th...
Katja Luther
10:10 AM bug #6998 (Resolved): Potential NPE wit endless loop when switching type of description element i...
Fixed with commit:taxeditor|f789bc46f5744f4f59c9ff83e5f7ea5483ea3869 Patrick Plitzner
10:09 AM bug #6998 (Feedback): Potential NPE wit endless loop when switching type of description element i...
Norbert:
folgender Bug:
ich lege eine neue Distribution in den Faktendaten an und ändere anschließend die Feldf...
Patrick Plitzner
01:02 PM Revision b78937cd (taxeditor): ref #6159: fix disabling of distribution details
Katja Luther
12:34 PM bug #6159: improve distribution editor in TaxEditor
now the details of the selected distribution are available in details view, the details of the distributions are disa... Katja Luther
12:29 PM Revision 8e68b46a (taxeditor): ref #6159: disable descriptionElementDetails for distribution editor
Katja Luther
11:33 AM Revision 2ad199f9 (taxeditor): Bug fix in reverse complementing uncut read sequences.
Ben Stöver
11:33 AM Revision f771a4a2 (taxeditor): Translation of menu text corrected.
Ben Stöver
11:32 AM Revision 1dc784e3 (taxeditor): Merge branch 'develop' into LibrAlign
# Conflicts:
# eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/editor/AlignmentEditor...
Patrick Plitzner
10:43 AM Revision 046fa1ce (taxeditor): ref #6159: minor
Katja Luther
10:39 AM bug #6994 (Resolved): phycobankID links only active when status is PUBLISHED
Applied in changeset commit:cdm-vaadin|677973fab639e9b0ae0edb6310fbeeb7066dbadb. Andreas Kohlbecker
10:39 AM bug #6995 (Resolved): Show phycobankIDs in Workingset editor
Applied in changeset commit:cdm-vaadin|677973fab639e9b0ae0edb6310fbeeb7066dbadb. Andreas Kohlbecker
10:39 AM Revision 677973fa (cdm-vaadin): fix #6995, fix #6994 showing registrationID in workingset items a...
Andreas Kohlbecker
10:14 AM Revision 05429a19 (taxeditor): ref #6908 Fix dirty flag handling in key list editor
Patrick Plitzner
10:08 AM Revision ca73b567 (cdm-vaadin): shading typified name in registration workingset item
Andreas Kohlbecker
10:07 AM Revision 50bcb8d0 (cdm-vaadin): removing obsolete registration workingset item ui concepts
Andreas Kohlbecker
09:47 AM Revision 9a1539bb (taxeditor): ref #6159: details of selected distr are shown for distr. editor
Katja Luther
09:20 AM Revision f789bc46 (taxeditor): Fix potential NPE and widget disposed exception
Patrick Plitzner
09:08 AM Revision e38f6e78 (taxeditor): ref #6925 Add non-restore flag to some parts
Patrick Plitzner
08:58 AM Revision 55d64fcd (cdm-vaadin): locking registration item buttons when status PUBLISHED or REJECTED
Andreas Kohlbecker
08:52 AM feature request #6908 (Resolved): Migrate polytomous key module
Patrick Plitzner
08:51 AM Revision 91333bc6 (taxeditor): ref #6908 Migrate remaining polytomous context menus and handlers
Patrick Plitzner

09/28/2017

05:20 PM Revision c9ecf03d (cdm-vaadin): renaming RegistrationWorkflowView to RegistrationWorksetView
Andreas Kohlbecker
04:50 PM Revision 3f09ac44 (taxeditor): ref #6908 Migrate polytomous key list and graph editor
Patrick Plitzner
04:09 PM feature request #6997 (Closed): RegistrationUI: Show authenticated user in toolbar with option to...
Andreas Kohlbecker
04:08 PM feature request #6997 (Resolved): RegistrationUI: Show authenticated user in toolbar with option ...
Applied in changeset commit:cdm-vaadin|eca2b6b09654c7d2d20d2a93152ec92dd3948c59. Andreas Kohlbecker
10:22 AM feature request #6997 (Closed): RegistrationUI: Show authenticated user in toolbar with option to...
Andreas Kohlbecker
04:08 PM Revision eca2b6b0 (cdm-vaadin): fix #6997 toolbar with login logout and user name and icon
Andreas Kohlbecker
03:25 PM Revision 360b73f0 (taxeditor): ref #6908 Migrate polytomous key list editor handlers
Patrick Plitzner
01:50 PM Revision bc91d03c (taxeditor): ref #6908 Migrate polytomous key list editor
- migrate some other parts and handlers Patrick Plitzner
10:12 AM bug #6987: LIE during name catalogue service call processing
this only can be reviewed after the release. Locally it worked as expected. Andreas Kohlbecker
10:11 AM bug #6987 (Resolved): LIE during name catalogue service call processing
Applied in changeset commit:cdmlib|3dcfb5ed8d6e9d4606308c1ed602ab1cecca72ca. Andreas Kohlbecker
10:11 AM Revision 3dcfb5ed (cdmlib): fix #6987 initializing extensions to avoid LIE
Andreas Kohlbecker
10:04 AM bug #6995 (Resolved): Show phycobankIDs in Workingset editor
The registration entries in the Workingset editor are missing the phycobank ID.
Currently the whole list of regist...
Andreas Kohlbecker
09:59 AM bug #6994 (Resolved): phycobankID links only active when status is PUBLISHED
The phycobankID links in the registration UI should not be active when the status differs from PUBLISHED Andreas Kohlbecker
08:38 AM task #6993 (New): Implement web service tests
Andreas Kohlbecker
08:33 AM task #6992 (New): Refactor and modernize web services
The cdmlib-remote controllers need to be harmonized and updated. This is the master ticked that assembles all related... Andreas Kohlbecker
08:04 AM bug #6991 (New): Exception while editing States in State term editor
~~~

!ENTRY eu.taxeditor 4 0 2017-09-27 12:10:39.866
!MESSAGE Could not get conversation for AbstractForm...
Patrick Plitzner

09/27/2017

07:09 PM feature request #6990 (Resolved): Migrate search result view
Applied in changeset commit:taxeditor|2ff53a7f8a8ec9eb8c5d4c8fb6b576d9ffb2f9f8. Patrick Plitzner
06:48 PM feature request #6990 (Resolved): Migrate search result view
Patrick Plitzner
07:09 PM Revision 2ff53a7f (taxeditor): fix #6990 Migrate search result view
Patrick Plitzner
06:43 PM Revision a229f63f (taxeditor): ref #6913 Remove e3 context menus and views
Patrick Plitzner
06:18 PM Revision 94fc8cbb (taxeditor): ref #6931 Migrate dnd for uses view
Patrick Plitzner
06:14 PM Revision 18bcaf4b (taxeditor): ref #6931 Fix class assignment in model fragment
Patrick Plitzner
04:27 PM Revision 2aacacd0 (taxeditor): fix NPE in taxonnode comparator
Andreas Müller
03:58 PM Revision cecad5b9 (taxeditor): fix NPE in taxonnode comparator
Andreas Müller
03:30 PM Revision 86a3145d (cdm-vaadin): using fixed header for registration workingset editor
Andreas Kohlbecker
03:29 PM Revision 895dd60d (cdmlib): ref #6964 adding missing data to registration response objects
Andreas Kohlbecker
03:26 PM feature request #6985 (Resolved): display Registration metadata in footnotes
Applied in changeset commit:cdm-dataportal|eaff53f7fd5596477d627d0f827d0ca0f485c49e. Andreas Kohlbecker
03:26 PM Revision eaff53f7 (cdm-dataportal): fix #6985 displaying registration metadata in footnotes and w...
Andreas Kohlbecker
03:07 PM Revision deffae8c (taxeditor): ref #6925 Fix part initialisation for open handlers
Patrick Plitzner
02:59 PM Revision 0cd603f0 (taxeditor): Checklist editor changes
Katja Luther
02:06 PM Revision 63bf9921 (taxeditor): fix NPE in Distribution Editor
Katja Luther
01:58 PM Revision d6b3e56b (taxeditor): further migration issues for distribution editor
Katja Luther
01:36 PM feature request #6989 (Resolved): Migrate concept graph view
Applied in changeset commit:taxeditor|bb101b3b0c496ef690b379cacd5819592518e4a7. Patrick Plitzner
10:56 AM feature request #6989 (Feedback): Migrate concept graph view
Patrick Plitzner
01:36 PM Revision b3b6bf8f (taxeditor): ref #6989 Refactor property tester for experimental feature
Patrick Plitzner
01:36 PM Revision c7ea9840 (taxeditor): ref #6909 Remove e3 plugin extensions
Patrick Plitzner
01:36 PM Revision bb101b3b (taxeditor): fix #6989 Migrate concept graph
Patrick Plitzner
11:58 AM feature request #6812: Improve TaxEditor download site
In the standup today we decided to place the beautiful download page at https://cybertaxonomy.eu/taxeditor/download ... Andreas Kohlbecker
10:13 AM feature request #6812: Improve TaxEditor download site
If I remember correctly, the proposed download should be highlighted. But when I go onto the website (Linux 64bit) my... Patrick Plitzner
09:31 AM feature request #6812: Improve TaxEditor download site
Walter:
Aber die neue Download-Liste sieht ja schick aus! Aber leider kann ich jetzt nicht mehr das Datum der Dat...
Andreas Müller
10:55 AM feature request #6595 (Resolved): Migrate name editor
Patrick Plitzner
10:02 AM Revision 9c4b5905 (taxeditor): minor
Katja Luther
09:39 AM Revision edb456d4 (taxeditor): migrate Distribution Editor to e4
Katja Luther
09:01 AM Revision e67a30fb (taxeditor): ref #6622 Remove e3 menu items and update e4 menu items
- for bulk editor and specimen editor Patrick Plitzner
08:47 AM Revision 5d040c73 (taxeditor): ref #6595 Remove e3 popup menu
Patrick Plitzner

09/26/2017

05:32 PM Revision 34a75b0a (cdm-vaadin): minor - lines moved
Andreas Kohlbecker
04:53 PM feature request #6596 (Closed): Migrate specimen editor
Patrick Plitzner
04:51 PM feature request #6932 (Resolved): Migrate bulk editor
Patrick Plitzner
04:49 PM Revision a6fc1476 (taxeditor): ref #6932 Retrieve missing taxon service for saving in bulk editor
Patrick Plitzner
04:45 PM Revision f518ed98 (taxeditor): ref #6932 Add missing bulk editor menu items
Patrick Plitzner
04:10 PM Revision afe3c62f (taxeditor): ref #6925 Remove label update depending on selection input
Patrick Plitzner
04:08 PM Revision 37bbbd30 (taxeditor): ref #6598 Migrate "Open in.." handlers
Patrick Plitzner
03:42 PM bug #6988 (New): dwca export webservice missing in swagger documentation
the `/dwca` endpoint is missing in the swagger documentation.
Add this endpoint to the swagger group "Data export...
Andreas Kohlbecker
03:30 PM Revision 485afab8 (taxeditor): ref #6932 Remove unused code
Patrick Plitzner
03:28 PM Revision 9e92b44f (taxeditor): ref #6932 Migrate marker type handler
Patrick Plitzner
03:24 PM bug #6987 (Resolved): LIE during name catalogue service call processing

http://api.cybertaxonomy.org/col/name_catalogue/taxon.json?taxonUuid=a031b7b2-0803-4cd1-958e-d8e7376dbe2d
~~~
o...
Andreas Kohlbecker
02:53 PM Revision a2121c64 (taxeditor): ref #6932 Asjust menu item visibility
Patrick Plitzner
02:53 PM Revision b395761f (taxeditor): ref #6932 Add "Open in..." menu
Patrick Plitzner
02:37 PM Revision e70e12b9 (taxeditor): ref #6597 Fix potential NPE
Patrick Plitzner
02:32 PM Revision 8b2d3c40 (taxeditor): ref #6932 Migrate merge handlers
Patrick Plitzner
02:32 PM Revision c5b0f41a (taxeditor): ref #6925 Fix part labels for empty views
Patrick Plitzner
02:32 PM Revision 5405049e (taxeditor): ref #6905 Fix potential NPE
Patrick Plitzner
01:53 PM Revision e098da77 (taxeditor): Merge branch 'develop' into bulkEditorE4
Patrick Plitzner
01:52 PM Revision 25af2145 (taxeditor): ref #6694 Fix potential NPE
Patrick Plitzner
01:50 PM bug #6844: New feature tree selection does not allow "no save"
still open Patrick Plitzner
01:49 PM bug #6763: Specimen editor does not ask for saving when closing the workbench
Yes, this still happens Patrick Plitzner
12:52 PM task #6986 (In Progress): 4 animalia lists available for RL
Andreas Müller
12:52 PM task #6986 (In Progress): 4 animalia lists available for RL
The import will run into production_rl_animalia_final
* Säugetiere (BfN-Liste von 2009)
* Reptilien (BfN-Liste vo...
Andreas Müller
11:55 AM feature request #6985 (Resolved): display Registration metadata in footnotes
in #6959 the display of Registration metadata in a Drupla block has been implemented.
Since a Taxon page can cont...
Andreas Kohlbecker
10:54 AM bug #6845 (Worksforme): dirty button does not work in feature tree editor
Andreas Müller
10:40 AM bug #6845 (Rejected): dirty button does not work in feature tree editor
this has already been fixed Patrick Plitzner
10:53 AM bug #6872 (Worksforme): Specimen editor does not enable save icon when editing
Andreas Müller
10:30 AM bug #6872 (Rejected): Specimen editor does not enable save icon when editing
This has already been fixed. Patrick Plitzner
10:11 AM feature request #6812: Improve TaxEditor download site
Andreas Kohlbecker wrote:
> But keep in mind that this will make the directory listing of download/taxeditor/ unacc...
Andreas Müller
09:56 AM feature request #6812: Improve TaxEditor download site
Andreas Müller wrote:
> We today decided to put the download site to https://dev.e-taxonomy.eu/download/taxeditor/st...
Andreas Kohlbecker
09:54 AM bug #6984 (New): withHeader is not yet working in DwC-A export
Andreas Müller

09/25/2017

11:53 PM feature request #6812 (Feedback): Improve TaxEditor download site
We today decided to put the download site to https://dev.e-taxonomy.eu/download/taxeditor/stable/ (before it was on h... Andreas Müller
02:43 PM feature request #6812 (Resolved): Improve TaxEditor download site
Andreas Müller
10:19 PM feature request #6693 (Closed): Implement missing nomenclatural codes for name detail element
This is now fully fixed Andreas Müller
01:42 PM feature request #6693 (Feedback): Implement missing nomenclatural codes for name detail element
Andreas Müller wrote:
> It is still missing for "anamorphic" when changing from "Fungi" to e.g. ICNAFP. Anamorphic m...
Katja Luther
01:42 PM feature request #6693 (Resolved): Implement missing nomenclatural codes for name detail element
Applied in changeset commit:taxeditor|202ba579336a7c3798e2acb9ffcfcb694ef69fcb. Katja Luther
01:40 PM feature request #6693: Implement missing nomenclatural codes for name detail element
All the rest seems to work as expected. Andreas Müller
01:35 PM feature request #6693 (Feedback): Implement missing nomenclatural codes for name detail element
It is still missing for "anamorphic" when changing from "Fungi" to e.g. ICNAFP. Anamorphic must not be true for any o... Andreas Müller
09:17 AM feature request #6693 (Resolved): Implement missing nomenclatural codes for name detail element
Andreas Müller wrote:
> It seems to be available only for "Name Approbation". But it should be available for all att...
Katja Luther
06:34 PM Revision 89268bbb (taxeditor): Merge branch 'develop' into bulkEditorE4
Patrick Plitzner
03:52 PM feature request #6509 (Resolved): Implement Representation csv import
should we close this and open new ticket for remaining issues? Andreas Müller
03:32 PM Revision 1efc3e19 (cdm-server): Merge branch 'release/4.10.0' into develop
jenkins
03:32 PM Revision fd1d96bf (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
03:31 PM Revision a0256991 (cdm-server): updating poms for branch'release/4.10.0' with non-snapshot versions
jenkins
03:23 PM Revision 1b10bebd (cdm-webapp): Merge branch 'release/4.10.0' into develop
jenkins
03:22 PM Revision a513d754 (cdm-webapp): updating poms for branch'release/4.10.0' with non-snapshot versions
jenkins
03:22 PM Revision ceeb92aa (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.10.0
jenkins
03:22 PM Revision 72648223 (taxeditor): Merge branch 'release/4.10.0' into develop
jenkins
03:22 PM Revision 495168f2 (taxeditor): Merge branch 'release/4.10.0'
jenkins
03:21 PM Revision 3952792c (cdm-vaadin): Merge branch 'release/4.10.0' into develop
jenkins
03:21 PM Revision 8666e959 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
03:19 PM Revision bce4dcd1 (cdm-vaadin): updating poms for branch'release/4.10.0' with non-snapshot versions
jenkins
03:18 PM Revision a4e2332d (cdm-vaadin): jenkins bumping cdmlib.version to 4.10.0
jenkins
03:18 PM Revision e423b466 (cdm-dataportal): Merge branch 'release/4.10.0' into develop
jenkins
03:18 PM Revision 3e8c77bc (cdm-dataportal): updating poms for branch'release/4.10.0' with non-snapshot ve...
jenkins
03:18 PM Revision ddce1a80 (cdm-dataportal): release-preparation: production level css
jenkins
03:17 PM Revision 2981eeb5 (cdmlib): Updating develop poms back to pre merge state
jenkins
03:17 PM Revision c4f89f68 (cdmlib): Merge branch 'master' into develop
jenkins
03:17 PM Revision 11cde38d (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:17 PM Revision eb4bb9cf (cdmlib): Merge branch 'release/4.10.0'
jenkins
03:12 PM bug #5965 (Worksforme): Check if authentication works correctly after datasource change
Can't reproduce this anymore. Maybe it fixed in the meanwhile or was related to the update. Andreas Müller
03:03 PM Revision 9afb68f5 (cdmlib): updating poms for branch'release/4.10.0' with non-snapshot versions
jenkins
03:00 PM Revision 0667dd8e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.10.0-S...
jenkins
03:00 PM Revision 063ddc1f (cdm-webapp): updating poms for 4.11.0-SNAPSHOT development
jenkins
03:00 PM Revision 63f337f6 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.11.0-S...
jenkins
02:59 PM Revision 80f3b1be (taxeditor): Updated version in pom / project files to taxeditor version : 4.11...
jenkins
02:59 PM Revision 9f4da781 (taxeditor): Updated version in pom / project files to taxeditor version : 4.10...
jenkins
02:58 PM Revision 75ef6463 (cdm-vaadin): jenkins bumping cdmlib.version to 4.10.0-SNAPSHOT
jenkins
02:58 PM Revision 225d4b3e (cdm-vaadin): updating poms for 4.11.0-SNAPSHOT development
jenkins
02:58 PM Revision 7c78851b (cdm-vaadin): jenkins bumping cdmlib.version to 4.11.0-SNAPSHOT
jenkins
02:58 PM Revision ed8a293a (cdm-dataportal): updating poms for 4.11.0-SNAPSHOT development
jenkins
02:58 PM Revision 358161c8 (cdm-server): updating poms for 4.11.0-SNAPSHOT development
jenkins
02:56 PM Revision 97fd0258 (cdmlib): updating poms for 4.11.0-SNAPSHOT development
jenkins
02:48 PM Revision fbac3ea6 (cdmlib): ref #6968 add taxon title to warning
Andreas Müller
02:46 PM bug #6968 (Closed): Unexpected error in CDM light when exporting Individuals Association with no ...
Looks ok. Andreas Müller
12:58 PM bug #6968 (Resolved): Unexpected error in CDM light when exporting Individuals Association with n...
Applied in changeset commit:cdmlib|4cfa061e291e90d77dc09e7d09f37f53c98e4e0b. Katja Luther
02:45 PM Revision 94f0df26 (taxeditor): ref #6933: set anamorph to false if change NC
Katja Luther
02:34 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM l...
This is fixed now.
Remaining layout issues:
* indentation
* duplicated label for "Export complete classificati...
Andreas Müller
01:56 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM l...
Also when I open the export for a certain node but then choose "Export complete classification" the first classificat... Andreas Müller
01:54 PM feature request #6933 (Feedback): Add possibility to export only families or other part of the tr...
Now when trying to open the export from a classification node I get an NPE
~~~
login : admin
editor version : 4....
Andreas Müller
01:02 PM feature request #6933 (Resolved): Add possibility to export only families or other part of the tr...
Katja Luther
02:34 PM Revision 72e56518 (taxeditor): ref #6933 minor adaptations to labels for CDM light export
Andreas Müller
02:29 PM Revision 7293cf0b (taxeditor): ref #6933 change Export selected classification to Export complete...
Andreas Müller
02:22 PM Revision 1922fc2a (taxeditor): ref #6812 adapt download site on https://cybertaxonomy.eu/taxedito...
Andreas Müller
02:10 PM Revision 76064f4f (cdmlib): Minor change in error handling in CDM light
Andreas Müller
02:06 PM Revision ae455253 (taxeditor): ref #6933: classification of selected node preselected in classifi...
Katja Luther
01:58 PM Revision 363dd7cb (taxeditor): ref #6933: fix NPE
Katja Luther
01:43 PM bug #6494 (Worksforme): Fix null titleCache for CoL import
In the latest CoL import there is no Reference with titleCache = null. So this can be closed. Andreas Müller
01:42 PM Revision 202ba579 (taxeditor): fix #6693: anamorphic must not be true for all other than fungi
Katja Luther
01:37 PM bug #6983 (Duplicate): details view of misapplied names needs refresh after exchange of taxon
Katja Luther
01:34 PM bug #6983 (Duplicate): details view of misapplied names needs refresh after exchange of taxon
after changing the taxon of misapplied name relationship the details view does not update, the taxon shown in the nam... Katja Luther
01:31 PM bug #6789 (Closed): Remaining issues for misapplied name details view
Looks fine now.
The remaining 2 issues are that the name editor and the details view do not fully correctly refere...
Andreas Müller
09:32 AM bug #6789 (Resolved): Remaining issues for misapplied name details view
Andreas Müller wrote:
> jetzt gibt es noch ein Problem mit den Misapplied Names. Wenn ich wie (im attachement) „Mein...
Katja Luther
01:19 PM feature request #6815: OriginalSource idNamespace + idInSource default separator should be white...
I will review this after the release. Andreas Müller
12:40 PM feature request #6815: OriginalSource idNamespace + idInSource default separator should be white...
Created new ticket for the configurability issue: #6982
Andreas Müller
12:16 PM feature request #6815 (Resolved): OriginalSource idNamespace + idInSource default separator shou...
Andreas Kohlbecker
12:16 PM feature request #6815: OriginalSource idNamespace + idInSource default separator should be white...
Andreas Müller wrote:
> Can we still implement the new default in 4.10?
Ok, I changed the seperator to the space ch...
Andreas Kohlbecker
10:36 AM feature request #6815 (Feedback): OriginalSource idNamespace + idInSource default separator shou...
Andreas Kohlbecker
01:02 PM Revision a73cb995 (taxeditor): ref #6933: if taxonnode filter is selected classification combo no...
Katja Luther
12:59 PM bug #3790 (Worksforme): After swapping accepted <> synonym the TaxonNavigator should be refreshed
this is no issue anymore Katja Luther
12:58 PM Revision 4cfa061e (cdmlib): fix #6968: add warning if indiv. assoc. has no specimen
Katja Luther
12:43 PM bug #6982: OriginalSource idNamespace + idInSource separator must be configurable
Andreas Kohlbecker wrote:
>Regarding configurability: A simple default character would not be suffcient. Woul'nt we ...
Andreas Müller
12:39 PM bug #6982 (New): OriginalSource idNamespace + idInSource separator must be configurable
> der Slash in [Fig./1] steht nicht in den Daten, wo kommt der her?
Fig .1 ist in den Daten als "idInSource": "1",...
Andreas Müller
12:33 PM bug #6894 (Closed): NPE when trying drag&drop a Classification to the GrantedAuthority editor
Looks good now. Andreas Müller
10:21 AM bug #6894 (Resolved): NPE when trying drag&drop a Classification to the GrantedAuthority editor
sorry, I reverted the changes and now the root node is used for the TaxonNodeVoter Katja Luther
12:24 PM feature request #6911 (Closed): Migrate concept view
Fix seems to work. So we can close the ticket I think. Andreas Müller
12:23 PM bug #6842 (Closed): NPE in Registration constructor when name is null
Andreas Kohlbecker
12:22 PM feature request #6654 (Closed): implement a CdmPermissionVoter for Registrations
Andreas Kohlbecker
12:21 PM feature request #6959 (Closed): Block to display Registration metadata
Andreas Kohlbecker
12:20 PM feature request #6703 (Closed): Improve title handling for media in dataportal
Andreas Kohlbecker
12:12 PM Revision 05c57463 (cdm-dataportal): ref #6815 using space as separator for idNamespace + idInSource
Andreas Kohlbecker
11:55 AM Revision 2e563135 (cdmlib): code cleaning
Katja Luther
10:52 AM bug #6897: i18n Messages.java files are missing in the build version
Andreas Müller wrote:
> I think this was fixed in 4.9.2 not 4.10. Please correct me if this is not true.
4.9.2 wa...
Patrick Plitzner
10:30 AM feature request #6791: Test RMIIO for remote procedure calls of streams in TaxEditor
Imports and Exports are the most important usecases I do know for now. So this is both directions.
Andreas Müller
10:20 AM feature request #6791: Test RMIIO for remote procedure calls of streams in TaxEditor
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Please give more details on the problems that rise this requi...
Andreas Kohlbecker
10:04 AM feature request #6791: Test RMIIO for remote procedure calls of streams in TaxEditor
Andreas Kohlbecker wrote:
> Please give more details on the problems that rise this requirement: For which situation...
Andreas Müller
10:23 AM Revision 22b131ad (cdmlib): #2342 ref #6755 try to fix LIE in remote
Andreas Müller
10:20 AM Revision 2f567cbc (taxeditor): ref ##6894: revert use of classification instead of rootnode for C...
Katja Luther
10:09 AM feature request #6840: Translate dataportal to German
Can we install this on production? Andreas Müller
10:07 AM bug #6825: Specimen map shows point data only if ALL field units are georeferenced
it's more a matter of performance :-) Andreas Müller
09:15 AM Revision 8e22f635 (taxeditor): ref #6693: add subGenusAuthor to null check when changing NC
Katja Luther

09/24/2017

10:50 PM bug #6897: i18n Messages.java files are missing in the build version
I think this was fixed in 4.9.2 not 4.10. Please correct me if this is not true. Andreas Müller
10:50 PM Revision 046ed002 (taxeditor): fix details view for taxa also misapplied name
Katja Luther
09:50 PM Revision f0c1c939 (cdmlib): ref #2342 ref 6755 fix DwC-A export test
Andreas Müller
09:21 PM bug #6730: Deleting media leads to inconsistent data
Andreas Müller wrote:
> By the way there are a couple of other places where Media is used. E.g. DefinedTermBase.getM...
Katja Luther
09:16 PM Revision 36505ad4 (cdmlib): remove possibility of delete media of media specimen
Katja Luther
09:11 PM Revision 223b2cd6 (cdmlib): approve media delete for multiple referenced media
Katja Luther
04:50 PM bug #6347 (Closed): Improve layout for navigator sorttype selection
this should be fixed with last commit. Andreas Müller
04:48 PM Revision b152a0d5 (taxeditor): ref #6347 remove enable from sorting alternatives and use lower ca...
Andreas Müller
04:14 PM feature request #6812: Improve TaxEditor download site
what's about the new download page? Can we put it online with the next weeks release? Andreas Müller
04:13 PM task #6882 (Closed): Document CoL import, how to
Maybe this is not yet 100% ready. We can adapt the wiki page during the next import. Andreas Müller
04:04 PM feature request #6703: Improve title handling for media in dataportal
Is this still an open issue or was all fixed by the above commit? If fixed please adapt version as it was fixed 4 mon... Andreas Müller
04:02 PM feature request #6815: OriginalSource idNamespace + idInSource default separator should be white...
Can we still implement the new default in 4.10? Andreas Müller
04:01 PM feature request #6815: OriginalSource idNamespace + idInSource default separator should be white...
Andreas Müller wrote:
> Statt einem Slash einfach ein Leerzeichen zu verwenden sollte aber auch sehr häufig funktion...
Andreas Müller
10:57 AM Revision 3429c491 (cdmlib): ref #2342 ref 6755 fix some issues in higherClassification handling ...
Andreas Müller

09/23/2017

01:11 AM bug #6751: After shutdown error message in log file
is this still an open issue? Andreas Müller
01:10 AM bug #6551: Invalid parts
is this still an open issue? Andreas Müller
01:06 AM feature request #6598: Migrate commands and handlers
Should this be assigned to PP? Andreas Müller
01:04 AM bug #6763: Specimen editor does not ask for saving when closing the workbench
Is this still an open issue? Andreas Müller
12:59 AM bug #6844: New feature tree selection does not allow "no save"
Is this still an open issue? Andreas Müller
12:58 AM bug #6845: dirty button does not work in feature tree editor
Is this still an open issue? Andreas Müller
12:57 AM bug #6872: Specimen editor does not enable save icon when editing
Is this still an open issue? Andreas Müller
12:38 AM bug #6695: module cdmlib/services should not be an osgi bundle
Do we want to keep this ticket open? Andreas Müller
12:26 AM task #6286 (Resolved): Import Flora Hellenica
still needs final cleanup Andreas Müller
12:14 AM feature request #3958 (Closed): Handle CDMPreference table
I think we can close this as we are already using the CDM Preference table Andreas Müller
01:27 PM task #6981 (New): Migrate to Java 9
This may still take some time. This ticket is meant as a collection of links on how to migrate best.
https://blog....
Andreas Müller
11:52 AM feature request #6965: Tropicos Import
Ergänzung: Die in der Tabelle mit "Input" bezeichneten Felder sind die, die zu Tropicos hochgeladen wurden. Alle Feld... Walter Berendsohn

09/22/2017

12:14 AM feature request #6755 (Closed): Make DwcA export available for annosys via web services
Andreas Müller
12:14 AM task #6754 (Closed): Adapt DwcA Export to CDM light export strategy
Andreas Müller
11:42 PM Revision 818cfd67 (cdmlib): ref #2342 fix bug in higherClassification handling in DwC-A export an...
Andreas Müller
09:42 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM l...
Now the "Export selected subtree" is selected by default if started from a taxon node. But this should disable(make i... Andreas Müller
09:38 PM bug #6789 (Feedback): Remaining issues for misapplied name details view
jetzt gibt es noch ein Problem mit den Misapplied Names. Wenn ich wie (im attachement) „Mein zoow“ öffne, welches ein... Andreas Müller
09:23 PM Revision 8eaa553b (cdmlib): ref #6755 add header option to DwC-A export webservice
Andreas Müller
08:59 PM Revision d2f7f487 (cdmlib): ref #2342 first implementation of higherClassification handling in Dw...
Andreas Müller
08:54 PM Revision dcaa38a3 (cdmlib): cleanup
Andreas Müller
07:07 PM bug #3866: Link Taxon Editor name to the taxon in the taxon navigator
I tested with a new opened E+M database for Calendula arvensis which has about 10 ancestors. Andreas Müller
07:06 PM bug #3866 (Closed): Link Taxon Editor name to the taxon in the taxon navigator
This really works. Great!
Only minor issue: the performance might be slow especially when opening a taxon with a l...
Andreas Müller
06:38 PM feature request #4155: Implement handler (IHandler) to trigger recursive setting of the publish b...
The blocking ticket is now fixed so we can now start implementing this Andreas Müller
06:36 PM feature request #3740: Allow recursively setting the publish bit for TaxonBase
Please review Andreas Müller
06:30 PM feature request #6315 (Feedback): Implement setSecundumForSubtree in TaxEditor
There is also a lot of space between label "New secundum reference" and the text box for the secundum. Can we minimiz... Andreas Müller
06:12 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
If the dialog box width is reduced (almost to minimum) the last 2 checkbox lines disappear. Increasing width does not... Andreas Müller
06:29 PM Revision 64c89096 (taxeditor): ref #6315 adapt labels for setSecundumForSubtree
Andreas Müller
06:25 PM Revision dd915781 (taxeditor): ref #6315 adapt labels for setSecundumForSubtree
Andreas Müller
05:59 PM Revision 6c900cf6 (cdmlib): revert unwanted commit a509a0ab9082876741
Andreas Müller
05:55 PM Revision b04fdc77 (cdmlib): #6755 added withHigherClassification to DwC-A export webservice
Andreas Müller
05:51 PM Revision 84ffea71 (cdmlib): cleanup
Andreas Müller
05:43 PM Revision bac63229 (taxeditor): Merge branch 'develop' into bulkEditorE4
# Conflicts:
# eu.etaxonomy.taxeditor.editor/META-INF/MANIFEST.MF
# eu.etaxonomy.taxeditor.editor/src/main/java/eu/et...
Patrick Plitzner
05:01 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor
Andreas Müller wrote:
> So do I understand correctly that a ClassificationVoter does not (yet) exist. If yes than we...
Andreas Kohlbecker
04:51 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor
So do I understand correctly that a ClassificationVoter does not (yet) exist. If yes than we need of course to store ... Andreas Müller
04:35 PM bug #6894 (Feedback): NPE when trying drag&drop a Classification to the GrantedAuthority editor
Andreas Kohlbecker
04:35 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor
The drag and drop action is no longer causing a NPE but the resulting authority is not correct. The Autority which is... Andreas Kohlbecker
04:54 PM feature request #6911 (Resolved): Migrate concept view
Andreas Müller
03:12 PM feature request #6911: Migrate concept view
Andreas Müller wrote:
> Ok, so we will handle later. But what is about the exception? Also later or can this be fixe...
Patrick Plitzner
03:05 PM feature request #6911: Migrate concept view
Ok, so we will handle later. But what is about the exception? Also later or can this be fixed? Andreas Müller
01:41 PM feature request #6911: Migrate concept view
Andreas Müller wrote:
> This is still not fully fixed. Both views are emptied but the details view immediately is re...
Patrick Plitzner
12:42 PM feature request #6911: Migrate concept view
Also an exception may appear if you open the name editor, concept view and detail as above, and additionally you have... Andreas Müller
12:40 PM feature request #6911 (Feedback): Migrate concept view
This is still not fully fixed. Both views are emptied but the details view immediately is refilled (looks like the em... Andreas Müller
10:03 AM feature request #6911 (Resolved): Migrate concept view
Patrick Plitzner
09:46 AM feature request #6911: Migrate concept view
No taxon is open, I open a taxon with concept relations, the relations are shown in the concept view. When clicking o... Andreas Müller
04:36 PM bug #6978: NPE in DefaultReferenceCacheStrategy
See similar issue #6979#note-1 Andreas Müller
04:24 PM bug #6978: NPE in DefaultReferenceCacheStrategy
This is not necessarily a bug
~~~ java
protected static boolean isNomRef(ReferenceType type){
switc...
Andreas Müller
03:31 PM bug #6978 (New): NPE in DefaultReferenceCacheStrategy

OAIPMH Service call broken by a bug in in the DefaultReferenceCacheStrategy:

http://test.e-taxonomy.eu/cdmserve...
Andreas Kohlbecker
04:36 PM bug #6979: database inconsitent in roteliste_standardliste on test server?
This is most likely a duplicate for #6978. See my comment #6978#note-1
The problem again is this part
~~~
at...
Andreas Müller
03:35 PM bug #6979 (New): database inconsitent in roteliste_standardliste on test server?
http://test.e-taxonomy.eu/cdmserver/roteliste_standardliste/taxon/oai?verb=ListIdentifiers&metadataPrefix=oai_dc&set=... Andreas Kohlbecker
04:06 PM Revision 6215b5d6 (cdmlib): cleanup
Andreas Müller
04:01 PM bug #6683 (Closed): Use best quality media representation in image viewer on media page
This also seems to work I tested yesterday together with #6684 Andreas Müller
03:59 PM feature request #6693 (Feedback): Implement missing nomenclatural codes for name detail element
It seems to be available only for "Name Approbation". But it should be available for all attributes which are not ava... Andreas Müller
01:38 PM feature request #6693 (Resolved): Implement missing nomenclatural codes for name detail element
Katja Luther
01:38 PM feature request #6693: Implement missing nomenclatural codes for name detail element
Andreas Müller wrote:
> One more issue, which is a bit critical: we currently do have a hard validation if a name co...
Katja Luther
10:02 AM feature request #6693: Implement missing nomenclatural codes for name detail element
Andreas Müller wrote:
> One more issue, which is a bit critical: we currently do have a hard validation if a name co...
Katja Luther
03:57 PM feature request #6856 (Closed): Add group Admin to standard FirstDataInserter
Andreas Kohlbecker
03:55 PM feature request #6852 (Closed): GrantedAuthorities and permission Groups for Phycobank
Andreas Kohlbecker
03:49 PM Revision 14e45274 (cdmlib): ref #6730 try to fix compilation error
Andreas Müller
03:49 PM feature request #6964 (Closed): Registration webservices implemented
Andreas Kohlbecker
03:45 PM bug #6324: fix dozer mapping after removal of synonym relations
Even if duplicate issue is closed now this issue here can not yet be closed since its solution requires additional wo... Andreas Kohlbecker
03:44 PM bug #6948 (Closed): OAIPMH service broken by NPE with verb=ListIdentifiers & set=taxon
The NPE is suppressed by the fix the duplicate issue can not yet be closed since the its solution requires additional... Andreas Kohlbecker
03:41 PM bug #6980 (New): OAIPMH service seems to work onyl if LSIDs are present
http://test.e-taxonomy.eu/cdmserver/iapt/taxon/oai?metadataPrefix=oai_dc?set=synonym?verb=ListIdentifiers shows no id... Andreas Kohlbecker
03:40 PM Revision 77373f56 (taxeditor): ref #6925 Fix potential NPE
Patrick Plitzner
03:26 PM bug #6836 (Closed): Swagger documentation for OAIPMH broken
confirming that this is fixed, tested at edit-test Andreas Kohlbecker
03:25 PM Revision f24f22d9 (taxeditor): Change FileDialog to directoy dialog
Patrick Plitzner
03:24 PM bug #6730: Deleting media leads to inconsistent data
Sorry if I have even one more issue. Looking at the code I wonder if the service.update(updatedObject) command is rea... Andreas Müller
03:20 PM bug #6730: Deleting media leads to inconsistent data
By the way there are a couple of other places where Media is used. E.g. DefinedTermBase.getMedia, AmplificationResult... Andreas Müller
03:13 PM bug #6730: Deleting media leads to inconsistent data
the refactored code looks fine.
you are right a media specimen without media does not make sense. I don't know any...
Katja Luther
03:00 PM bug #6730: Deleting media leads to inconsistent data
While doing the refactoring I realized that I don't think we should allow Media being removed from MediaSpecimen. A M... Andreas Müller
03:00 PM bug #6730 (Feedback): Deleting media leads to inconsistent data
This looks good now.
However, I tried to further simplify/unify the code and to set updatedObject always to null f...
Andreas Müller
10:07 AM bug #6730 (Resolved): Deleting media leads to inconsistent data
Katja Luther
10:07 AM bug #6730: Deleting media leads to inconsistent data
Andreas Müller wrote:
> I did some further code cleaning (d8f50ab8), please check if you think this is correct.
>
...
Katja Luther
03:23 PM bug #6976: improve preferred media calculation algorithm in dataportal
Andreas Müller wrote:
> Andreas Müller wrote:
> > to me this looks like a duplicate for #6976
>
> ... ähh, for #...
Andreas Kohlbecker
03:11 PM bug #6976: improve preferred media calculation algorithm in dataportal
Andreas Müller wrote:
> to me this looks like a duplicate for #6976
... ähh, for #6975
Andreas Müller
03:11 PM bug #6976: improve preferred media calculation algorithm in dataportal
to me this looks like a duplicate for #6976 Andreas Müller
02:54 PM bug #6976 (New): improve preferred media calculation algorithm in dataportal
as stated in #6969#node_7 the algorithm to calculate the preferred media representation should prefer bigger image ov... Andreas Kohlbecker
03:01 PM Revision b11b49ce (taxeditor): ref #6597 Re-enable molecular handlers
Patrick Plitzner
02:59 PM feature request #6977 (New): check TreeNodeDropAdapterAssistant and TreeNodeDropAdapter if both a...
What I do not understand is the difference between TreeNodeDropAdapterAssistant and TreeNodeDropAdapter.
They look...
Katja Luther
02:58 PM bug #6961 (Closed): Drag&Drop for taxon nodes throws NPE when hovering Classification
works now.
I will check the two classes (create a new ticket and close this one)
Katja Luther
02:53 PM bug #6969 (Closed): Use media representation which best fits the available size for taxon profile...
Ok, agreed, I created a new ticket for the improvement of the calculation: #6975 and I am closing this ticket by now. Andreas Kohlbecker
12:16 PM bug #6969 (Feedback): Use media representation which best fits the available size for taxon profi...
Generally the switch seems to work.
Only the algorithm for me should decide earlier to take a larger image.
I p...
Andreas Müller
10:40 AM bug #6969 (Resolved): Use media representation which best fits the available size for taxon profi...
Applied in changeset commit:cdm-dataportal|02faa0870abc69cd6fe2fd7ddc8ddd6f684c3d97. Andreas Kohlbecker
02:52 PM bug #6975 (New): improve preferred media calculation algorithm in cdmlib
as stated in #6969#node_7 the algorithm to calculate the preferred media representation should prefer bigger image ov... Andreas Kohlbecker
02:48 PM feature request #6974 (Resolved): improve the io wizards
die Export-Assistenten (CDM light, DwC-A, …) haben derzeit folgenden Workflow:
1) Auswahl Export-Typ
2) Konfigura...
Katja Luther
02:40 PM Revision 2a44d1ef (cdmlib): ref #6730 further simplify/unify MediaServiceImpl.delete code
Andreas Müller
02:34 PM Revision fe505329 (taxeditor): change oder of export wizardpages
Katja Luther
01:48 PM Revision 379f6670 (cdmlib): ref #6730 move updatedObject decleration into loop
Andreas Müller
01:44 PM feature request #6922 (Closed): Migrate term editor
Patrick Plitzner
12:33 PM feature request #6922 (Feedback): Migrate term editor
Now, after reconnect the details view and supplemental data is emptied but when clicking on the empty details view th... Andreas Müller
10:53 AM feature request #6922 (Resolved): Migrate term editor
Patrick Plitzner
01:44 PM bug #6973 (New): Refreshing details and supplemental view
Copied from #6922:
If one adds a new term and then the label of this term is changed, the new label is not reflect...
Patrick Plitzner
01:40 PM bug #6799 (Closed): Implement progress monitor for DwC A export
Andreas Müller
11:36 AM bug #6799 (Resolved): Implement progress monitor for DwC A export
Andreas Müller
10:15 AM bug #6799: Implement progress monitor for DwC A export
the % works now, too. Katja Luther
01:38 PM Revision ffa44cef (taxeditor): ref #6925 Pull up selection handler and service
Patrick Plitzner
01:38 PM Revision 8e734ea0 (taxeditor): ref #6911 Fix potential NPE
Patrick Plitzner
01:34 PM bug #6972 (New): Editing the same FieldUnit in specimen bulk and tree editor behaves unusual
Andreas M.:
"ich habe das Ticket #6597 ja gerade geschlossen. Dennoch ist mir dabei ein seltsames Phänomen aufge...
Patrick Plitzner
01:31 PM Revision 32504fef (taxeditor): dialog to avoid lost data while change nc
Katja Luther
01:20 PM Revision fe2c05ec (taxeditor): Shorten labels for DB preferences
Andreas Müller
12:50 PM Revision 318fe1bb (taxeditor): Tools start with capital letter in ABCD configuration
Andreas Müller
12:35 PM feature request #6912 (Closed): Migrate datasources view
Andreas Müller
08:47 AM feature request #6912 (Resolved): Migrate datasources view
Patrick Plitzner
12:06 PM Revision 27522e15 (taxeditor): ref #6693: fix update of details view for changed nameType
Katja Luther
11:53 AM Revision 673929dd (cdm-dataportal): ref #6969 fixing bug in preferred media calculation
Andreas Kohlbecker
11:15 AM feature request #6957 (Closed): Implement cache strategy for viral names
as a first version it looks fine. Katja Luther
10:58 AM bug #6971 (New): Collect all remaining appearances of multiple representation exceptions since 4.10
Katja Luther
10:56 AM bug #6657 (Worksforme): Reproducable "multiple representations" exception for polytomous keys
this "reproducable" multiple representation exception is not reproducable anymore. Close this ticket and create a new... Katja Luther
10:53 AM Revision dbc398cf (taxeditor): ref #6922, #6925 Close editors when reconnecting
Patrick Plitzner
10:53 AM Revision da0bf48a (taxeditor): ref #6911, #6925 Clear views when selection providing editor is cl...
Patrick Plitzner
10:39 AM Revision 02faa087 (cdm-dataportal): fix #6969 using the size defined in settings to use the prefe...
- also using a workaround to circumvent the problem decribed in ref #6970 Andreas Kohlbecker
10:35 AM bug #6970 (New): portal/taxon/{uuid}/media returns only one media object even if no filter is set
portal/taxon/{uuid}/media service only delivers a filtered media object
which only contains the thumbnail representa...
Andreas Kohlbecker
10:17 AM bug #6958 (Closed): The description of the referencing objects view is missing in e4
works fine Katja Luther
10:06 AM Revision 3daff195 (cdmlib): ref #/6730: add all updated objcts to the deleteResult
Katja Luther
09:58 AM Revision 23588da1 (taxeditor): updateContent of NonviralNamedetail part if nc is changed
Katja Luther
09:52 AM Revision 2b01f647 (taxeditor): move name approbiation behind lsid in name details view
Katja Luther
08:47 AM Revision e3353b9c (taxeditor): ref #6912 Fix order of "Show View" menu
Patrick Plitzner

09/21/2017

11:25 PM bug #6684 (Closed): Use media representation which best fits the available viewport size for the ...
This seems to be fixed and looks much better now.
There is a similar issue for the taxon profile picture remaining.
Andreas Müller
11:24 PM bug #6969 (Closed): Use media representation which best fits the available size for taxon profile...
As an example you find a taxon with 3 different images here: http://test.e-taxonomy.eu/dataportal/preview/salvador/cd... Andreas Müller
10:51 PM Revision a509a0ab (cdmlib): ref #6730 try to remove compilation problem in MediaServiceImpl.delete
Andreas Müller
10:31 PM bug #6877 (Closed): links to synonyms not working when portal in tabbed mode without separate syn...
Seems to work Andreas Müller
10:20 PM feature request #6691 (Duplicate): Implement all name types in NameDetailElement
I think this is a duplicate Katja Luther
10:20 PM Revision 1cefec6b (taxeditor): fix #6961 fix further NPEs in TreeNodeDropAdapter and TreeNodeDrop...
Andreas Müller
10:18 PM Revision dc25caf0 (taxeditor): if classification is selected it is preselected in drop down
Katja Luther
10:12 PM bug #6730 (Feedback): Deleting media leads to inconsistent data
I did some further code cleaning (d8f50ab8), please check if you think this is correct.
While doing so I realized ...
Andreas Müller
09:25 PM bug #6730: Deleting media leads to inconsistent data
hopefully yes, I moved the handling of the textdata in a separate method, check for text in textdata and added all up... Katja Luther
09:23 PM bug #6730: Deleting media leads to inconsistent data
Is this for review for me? All issues fixed? Andreas Müller
08:56 PM bug #6730 (Resolved): Deleting media leads to inconsistent data
Applied in changeset commit:cdmlib|b8489aa95407f47ce7d81c2a308fd357bc6032a6. Katja Luther
06:16 PM bug #6730 (Feedback): Deleting media leads to inconsistent data
The general issue that inconsistent data is created and media are deleted if they shouldn't is fixed now.
However,...
Andreas Müller
05:53 PM bug #6730: Deleting media leads to inconsistent data
The "Delete" dialog now offers "Delete" or "Überspringen" (sorry don't know what is shown in English version). Why no... Andreas Müller
10:06 PM Revision d8f50ab8 (cdmlib): ref #6730 remove some further redundant code in MediaServiceImpl.delete
Andreas Müller
09:54 PM Revision 93216326 (taxeditor): move appended phrase above nom. code specific parts in details
Katja Luther
09:32 PM Revision 94a85ef9 (taxeditor): order of cache updater class in wizard and configurator
Katja Luther
09:09 PM bug #6813 (Worksforme): Illegal Argument Exception when switching AcceptedTaxonToSynonym
I also can't reproduce. Let's reopen if the error appears again. Andreas Müller
08:55 PM Revision b8489aa9 (cdmlib): fix #6730: handle description elements of taxa, names and specimen al...
Katja Luther
06:51 PM bug #6748 (Closed): Linking between derivate view and facts/media view
Looks like this is fully fixed now. Andreas Müller
06:42 PM feature request #6658 (Closed): Make mediaCreated editable in Media view
Andreas Müller
11:39 AM feature request #6658: Make mediaCreated editable in Media view
removed the indention. So we can close the ticket? Katja Luther
11:38 AM feature request #6658 (Resolved): Make mediaCreated editable in Media view
Applied in changeset commit:taxeditor|e38ddfeee4a59c876fedd950b64cb99147e4f865. Katja Luther
06:34 PM bug #6783 (Closed): Menu item for editing right is missing
This works now. The drag&drop issue is handled in a separate ticket #6894 and #6961 Andreas Müller
06:30 PM Revision fa8083dd (taxeditor): fix #6961 fix further potential NPEs in TreeNodeDropAdapter and Tr...
Andreas Müller
06:00 PM Revision 7ecc92ea (cdmlib): add try/catch for handling of description elements
Katja Luther
05:50 PM Revision b8cf1412 (cdmlib): ref #6730 cleanup
Andreas Müller
05:01 PM bug #6801 (Closed): DwCA Export is not stored at expected place
Seems to be fixed now Andreas Müller
10:03 AM bug #6801: DwCA Export is not stored at expected place
this should be fixed with the last commit. Katja Luther
10:02 AM bug #6801 (Resolved): DwCA Export is not stored at expected place
Applied in changeset commit:taxeditor|30878586ebb8f52ed48a22d66b62ecb6adb37356. Katja Luther
04:56 PM bug #6785 (Closed): Editors should be able to have multiple instances
Seems to be fully fixed now. Andreas Müller
04:51 PM feature request #6933 (Feedback): Add possibility to export only families or other part of the tr...
Also if I start export by right click on a taxon node I would expect "Export selected subtree" to be preselected. Cur... Andreas Müller
04:49 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM l...
If starting the export by right click on a classification I would expect this classification to be preselected in the... Andreas Müller
04:41 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM l...
Another minor issue:
The label text for the title and subtitle:
Output Model Export -> CDM light Export
co...
Andreas Müller
04:38 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM l...
The radio button works well but the label is now kind of duplicated. Can you please keep "Export complete classificat... Andreas Müller
10:30 AM feature request #6933 (Resolved): Add possibility to export only families or other part of the tr...
radio buttons are added and the filter is set to subtree filter, this was implemented already but not pushed. Katja Luther
04:44 PM feature request #6959 (Resolved): Block to display Registration metadata
Applied in changeset commit:cdm-dataportal|7535252d0d3beb47750d6ee67b45ecd903ab328b. Andreas Kohlbecker
12:00 PM feature request #6959 (In Progress): Block to display Registration metadata
Andreas Kohlbecker
04:44 PM Revision 7535252d (cdm-dataportal): fix #6959 displaying Registration entities in phycobank block
Andreas Kohlbecker
04:29 PM bug #6968 (Closed): Unexpected error in CDM light when exporting Individuals Association with no ...
I tried to export "New name" which is child of "Multi repre Test" in Classification "Testklass" on test/rem_conf_am.
...
Andreas Müller
04:19 PM bug #6860 (Closed): Use consistent calendar system for date picker
Seems to work correctly now. Andreas Müller
10:08 AM bug #6860 (Resolved): Use consistent calendar system for date picker
Andreas Müller
08:57 AM bug #6860: Use consistent calendar system for date picker
sorry, moved to conversion to UTC timezone to the dateElement. Now it works for all DateElements. Katja Luther
04:18 PM feature request #6964 (Resolved): Registration webservices implemented
Andreas Kohlbecker
12:01 PM feature request #6964 (In Progress): Registration webservices implemented
Andreas Kohlbecker
11:59 AM feature request #6964 (Closed): Registration webservices implemented

The webservices exposing Registrations must not expose Registrations to unauthenticated users which are not yet PUB...
Andreas Kohlbecker
04:17 PM feature request #6967 (New): RegistrationController identifier endpoints implemented

**RegistrationController**
Endpoints:
~~~
/registration/{localID}
/regsitration/{identifier}
~~~
Andreas Kohlbecker
04:15 PM Revision 00da181d (cdmlib): ref #6964 base implementation of the RegistrationController
Andreas Kohlbecker
04:15 PM Revision 62ae3f4e (cdmlib): ref #6964 Registration webservice endpoint for names
Andreas Kohlbecker
03:51 PM bug #6803 (Worksforme): Drag&Drop in Taxon Navigator does not refresh tree correctly
I also can't reproduce this anymore so I close as worksforme. Andreas Müller
03:42 PM feature request #6920: [DISCUSS] use ZonedDateTime (java8) instead of joda time
Is this still an open issue? I think we decided not to move to java.time.* for now, but this was more because there a... Andreas Müller
03:32 PM bug #6915: Delete does not work in media view for taxon
Andreas Müller wrote:
> Katja Luther wrote:
> > now all delete options are working, also the problem that while del...
Patrick Plitzner
03:29 PM bug #6915: Delete does not work in media view for taxon
Katja Luther wrote:
> now all delete options are working, also the problem that while delete one media from a galler...
Andreas Müller
03:31 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor
Andreas Müller wrote:
> @AK: what do you thing from the security implementation perspective?
??
Andreas Müller
02:53 PM bug #6919 (Closed): Unprotected titleCache field is still grayed
works fine Patrick Plitzner
02:43 PM bug #6949 (Closed): The Media details view does not show the full image
remaining issue #6966 Patrick Plitzner
02:43 PM bug #6966 (New): "no file found" warning missing in simple media details view
Copied from #6949:
"There is an issue now which I don't know if it is related. If entering an URL which does not l...
Patrick Plitzner
02:41 PM bug #6958 (Resolved): The description of the referencing objects view is missing in e4
Applied in changeset commit:taxeditor|a4857bdaf90208200fd34105d9ba0b6be6fdc20b. Patrick Plitzner
02:40 PM Revision a4857bda (taxeditor): fix #6958 Add content description to referencing objects view
Patrick Plitzner
02:01 PM feature request #6965: Tropicos Import
Es handelt sich um einen reinen Namensimport. Allerdings sollte es möglich sein, die Namen unter einen definierten Ta... Andreas Müller
01:58 PM feature request #6965 (New): Tropicos Import
Auszug Caryophyllales Mail WGB 18.9.2017:
Für den Import brauchen wir dann wohl Deine Hilfe. Wie dargestellt, gehe...
Andreas Müller
12:31 PM feature request #6693 (Feedback): Implement missing nomenclatural codes for name detail element
One more issue, which is a bit critical: we currently do have a hard validation if a name contains only data which is... Andreas Müller
11:38 AM Revision e38ddfee (taxeditor): fix #6658: remove the indentation from text field of dateElement
Katja Luther
11:00 AM Revision db5f97f7 (cdmlib): add new enum ExportType
Katja Luther
10:50 AM Revision 2f310189 (cdmlib): the export result needs to know from which kind of export it is
Katja Luther
10:26 AM Revision da38b436 (taxeditor): add radio buttons for selection of export classification or subtree
Katja Luther
10:02 AM Revision 30878586 (taxeditor): fix #6801:fix writing of dwca file
Katja Luther
08:56 AM Revision 82a099cf (taxeditor): initial time of date element needs to be UTC timezone
Katja Luther
08:40 AM Revision a05f423c (taxeditor): adapt export wizards to the use of filters
Katja Luther

09/20/2017

12:16 AM feature request #6933: Add possibility to export only families or other part of the tree in CDM l...
I tried to export "Nepenthaceae Dumort." from caryo_nepenthes on test-server. The result returned only 1 record in th... Andreas Müller
12:08 AM feature request #6933 (Feedback): Add possibility to export only families or other part of the tr...
>The UI component for switching between taxon node and complete classification should more clearly show that these ar... Andreas Müller
12:04 AM bug #6799 (Feedback): Implement progress monitor for DwC A export
>now there is a progress monitor showing the progress for the partitioning. The % of all work is still not working.
...
Andreas Müller
12:02 AM bug #6799 (Closed): Implement progress monitor for DwC A export
This seems to work now. Andreas Müller
11:57 PM bug #6801 (Feedback): DwCA Export is not stored at expected place
The result still does not show up in the expected folder.
However, the progress monitoring works now and also the ...
Andreas Müller
11:51 PM bug #6860 (Feedback): Use consistent calendar system for date picker
The given solution seems to work only for Media.createDate. However there are other places where the DateTime and the... Andreas Müller
11:40 PM feature request #6922: Migrate term editor
All other features seem to work. Andreas Müller
11:40 PM feature request #6922: Migrate term editor
A reconnect does not close the term editor. In e3 it still does.
Please also check for other editors. I only checked...
Andreas Müller
11:37 PM feature request #6922 (Feedback): Migrate term editor
If one adds a new term and then the label of this term is changed, the new label is not reflected in the label of the... Andreas Müller
11:25 PM bug #6952: Deleting terms does not get reflected in the UI and in the DB
>After reconnecting and re-opening the term editor, the term is gone but it is still is the DB.
What happens in th...
Andreas Müller
10:57 PM bug #6897 (Closed): i18n Messages.java files are missing in the build version
Andreas Müller
10:57 PM bug #6897: i18n Messages.java files are missing in the build version
The only message I get beside log4j issues is: Could not find element with Id 'bulkeditor.menus.openmenu' .
As thi...
Andreas Müller
10:36 PM feature request #6597 (Closed): Migrate Details View
Looks like this is all fixed. Andreas Müller
07:44 PM feature request #6905 (Closed): Migrate supplemental data view
Seems to work fine now Andreas Müller
07:41 PM feature request #6911 (Feedback): Migrate concept view
All mentioned issues seem to be fixed (loss of focus, save button, closing taxon exception).
A new open issue is: ...
Andreas Müller
07:36 PM feature request #6912 (Feedback): Migrate datasources view
>Final issue: Main menu entry in "Open View" has been moved. It should be in the bottom group together with "Session"... Andreas Müller
07:32 PM bug #6949 (Feedback): The Media details view does not show the full image
Andreas Müller
07:31 PM bug #6949: The Media details view does not show the full image
Seems to work and can be closed.
There is an issue now which I don't know if it is related. If entering an URL whi...
Andreas Müller
07:03 PM feature request #6529: Extend WorkingSet to allow a more fine grained definiton of taxon set
please review Andreas Müller
07:02 PM feature request #6618 (Resolved): Add link to Structure, Property, Method(?) and Type(?)
I suggest to close this ticket as "structure" and "property" is implemented now. We may reopen or create new ticket i... Andreas Müller
06:42 PM feature request #6692 (Closed): Make name types changeable
In future we may want to have not only code abbreviations but more human readable labels. Also we may want to order a... Andreas Müller
06:38 PM feature request #6691: Implement all name types in NameDetailElement
To me this seems to be a duplicate for 6693 (or vice versa). Please see my comments on #6693. Andreas Müller
06:36 PM bug #6963 (New): Implement cache strategy for cultivars, bacterial names
We do now allow editing all nomenclatural codes and subtypes (e.g. fungi).
Therefore we need to implement appropri...
Andreas Müller
06:33 PM feature request #6693: Implement missing nomenclatural codes for name detail element
Andreas Müller wrote:
> Is it possible to move the "Name approbation" for bacterial names either up below "LSID" or ...
Andreas Müller
06:26 PM feature request #6693: Implement missing nomenclatural codes for name detail element
Is it possible to move the "Name approbation" for bacterial names either up below "LSID" or if this is not possible d... Andreas Müller
06:18 PM feature request #6950: Alllow the usage of Viral Names
The NPE related to #6957 is now fixed. We can try to add a details view for Viral names.
The specific issue for vi...
Andreas Müller
06:02 PM Revision e225119e (taxeditor): cleanup
Andreas Müller
06:00 PM feature request #6957 (Resolved): Implement cache strategy for viral names
A first version is ready. We may think about handling viral names with rank higher then species differently in future... Andreas Müller
05:35 PM bug #6789 (Closed): Remaining issues for misapplied name details view
Close this ticket and move remaining issues to new ticket #6962 Andreas Müller
05:28 PM bug #6789: Remaining issues for misapplied name details view
Is it possible to also add "Sensu" and "Detail" to the blue part if taxon is clicked to show e.g. supplemental data f... Andreas Müller
05:34 PM bug #6962 (New): Finally remaining issues for misapplied name details view
* TitleCache: unclear what should be shown here, maybe we should hide the titleCache field by default (but make it co... Andreas Müller
04:58 PM bug #6961: Drag&Drop for taxon nodes throws NPE when hovering Classification
Can you please review?
What I do not understand is the difference between TreeNodeDropAdapterAssistant and TreeNod...
Andreas Müller
03:11 PM bug #6961 (Resolved): Drag&Drop for taxon nodes throws NPE when hovering Classification
Applied in changeset commit:taxeditor|e2a02bc30e4c5fb72bb85b1b0e0b8edbb53923f4. Andreas Müller
03:09 PM bug #6961 (Closed): Drag&Drop for taxon nodes throws NPE when hovering Classification
~~~
login :
editor version : 4.10.0.201709192246
server : ()
schema version :
os : Windows Server 2012 R2 6.3...
Andreas Müller
04:11 PM Revision 9aa59538 (taxeditor): fix #6961 fix NPE for TaxonNode d&d when hovering classification i...
Andreas Müller
03:14 PM Revision 0ade2b1f (cdmlib): cleanup
Andreas Müller
03:11 PM Revision e2a02bc3 (taxeditor): fix #6961 fix NPE for TaxonNode d&d when hovering classification
Andreas Müller
02:23 PM Revision 9b7bec58 (cdmlib): fix creation of new namedAreas in specimen import and search for isocode
Katja Luther
02:11 PM Revision 19d67961 (cdmlib): ref #6960
Andreas Müller
02:07 PM bug #6960 (New): Improve reference cachestrategy
There are a number of issues with the existing reference cache strategy (DefaultReferenceCacheStrategy).
This tick...
Andreas Müller
12:50 PM Revision 2fa45f7e (cdmlib): fix gatheringAgent import in ABCD Import
Katja Luther
12:02 PM Revision 3668c4ea (cdm-vaadin): fixing swapped long lat in geolocation field
Andreas Kohlbecker
11:55 AM Revision 5d4b812e (cdm-vaadin): fixing phycobank host name and supporting new registrations
Andreas Kohlbecker
10:43 AM feature request #6959 (Closed): Block to display Registration metadata
This Block should display the:
* PhycobankId
* registrationDate
* institution
Andreas Kohlbecker
10:09 AM Revision 86244fd8 (cdmlib): ref #6627: use taxonnodeFilter and partitioner for cdmLightExport
Katja Luther
09:53 AM bug #6958 (Feedback): The description of the referencing objects view is missing in e4
I put this on Feedback to guarantee that we don't miss to handle this regression before the release Andreas Müller
09:19 AM bug #6958 (Closed): The description of the referencing objects view is missing in e4
in the e4 referencing objects view the label/description is missing Katja Luther
09:16 AM feature request #6910: Migrate referencing objects view
The description/label of the view is missing, keep this ticket closed and create a new one.(#6958) Katja Luther

09/19/2017

03:29 PM Revision 7665d3d5 (cdmlib): pass the vocService to the setCountry method
Katja Luther
02:38 PM bug #6493 (Worksforme): Another reproducable "multiple representations" exception for name relati...
Could not reproduce it anymore, played around a lot, but could not create the exception. Tried to open several taxa w... Katja Luther
12:50 PM Revision d63a08c7 (cdmlib): ref #6957 first version of viral name cache strategy
Andreas Müller
12:50 PM feature request #6957 (Closed): Implement cache strategy for viral names
Viral names are not yet correctly handled in the name cache strategy and throw an NPE when calling getTitleCache Andreas Müller
12:30 PM feature request #6956 (New): [Rule] Implement validation rules for virus names
... according to the ICVCN (https://talk.ictvonline.org/information/w/ictv-information/383/ictv-code)
Additional ...
Andreas Müller
10:10 AM bug #6418 (Worksforme): Status line does not update after completing the update of the referencin...
this seems to be fixed. Katja Luther
09:44 AM bug #6860: Use consistent calendar system for date picker
should be solved now. the UTC timezone is now used for reading. Katja Luther
09:43 AM bug #6860 (Resolved): Use consistent calendar system for date picker
Applied in changeset commit:taxeditor|8b5ab7b25626ebdd368ca8f496f76a3fd7aed1b8. Katja Luther
09:42 AM Revision 8b5ab7b2 (taxeditor): fix #6860: add UTC timezone also to reading from entity in DateEle...
Katja Luther
09:15 AM feature request #6907 (Closed): Migrate factual data view
seems to work now. Katja Luther
08:40 AM bug #6955 (New): NamedAreaSelection Dialog needs to be adapted to filtered getUuidAndTitleCache l...
now the first opening of the selection dialog is faster, but searching for the first pattern still needs some time. F... Katja Luther
08:37 AM feature request #6926 (Closed): First call of NamedAreaSelectionDialog needs too much time
Katja Luther
08:37 AM feature request #6926 (Resolved): First call of NamedAreaSelectionDialog needs too much time
Katja Luther
08:37 AM feature request #6926: First call of NamedAreaSelectionDialog needs too much time
keep this in 4.10 because starting is faster, but create a new ticket for fixing completely Katja Luther
 

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