bug #8731
closedBioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
100%
Description
I am not sure about the timing of the situation in which this exception occurred.
I was searching the http://ww3.bgbm.org/biocase/pywrapper.cgi?dsa=Herbar
for TaxonName=Bupleurum falcatum*
after clicking finish one the Search result view has appeared I clicked the Configuration button. At about this time the below exception has been thrown.
This problem is reprocucible without the need to click the Configuration button
!ENTRY org.eclipse.core.jobs 4 2 2019-11-28 15:34:48.626 !MESSAGE An internal error occurred during: "Query specimen provider". !STACK 0 org.eclipse.swt.SWTException: Invalid thread access at org.eclipse.swt.SWT.error(SWT.java:4533) at org.eclipse.swt.SWT.error(SWT.java:4448) at org.eclipse.swt.SWT.error(SWT.java:4419) at org.eclipse.swt.widgets.Widget.error(Widget.java:483) at org.eclipse.swt.widgets.Widget.checkWidget(Widget.java:421) at org.eclipse.swt.widgets.Text.setText(Text.java:2595) at eu.etaxonomy.taxeditor.view.dataimport.e4.SpecimenImportViewE4.query(SpecimenImportViewE4.java:127) at eu.etaxonomy.taxeditor.view.dataimport.e4.SpecimenSearchWizardE4$QueryJob.run(SpecimenSearchWizardE4.java:192) at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55) 2019-11-28 15:35:15,745 ERROR [eu.etaxonomy.taxeditor.model.MessagingUtils$1] - This is an unexpected error. Please contact EDIT Support (EditSupport@bgbm.org) with the error trace below (click on the 'Details' button). java.lang.Exception: login : editor version : 5.12.0.qualifier server : () schema version : os : Linux 5.0.0-36-generic amd64 java : 1.8.0_131 org.eclipse.swt.SWTException: Invalid thread access at org.eclipse.swt.SWT.error(SWT.java:4533) at org.eclipse.swt.SWT.error(SWT.java:4448) at org.eclipse.swt.SWT.error(SWT.java:4419) at org.eclipse.swt.widgets.Widget.error(Widget.java:483) at org.eclipse.swt.widgets.Widget.checkWidget(Widget.java:421) at org.eclipse.swt.widgets.Text.setText(Text.java:2595) at eu.etaxonomy.taxeditor.view.dataimport.e4.SpecimenImportViewE4.query(SpecimenImportViewE4.java:127) at eu.etaxonomy.taxeditor.view.dataimport.e4.SpecimenSearchWizardE4$QueryJob.run(SpecimenSearchWizardE4.java:192) at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55) at eu.etaxonomy.taxeditor.model.MessagingUtils$1.run(MessagingUtils.java:286) at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35) at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182) at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4536) at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4154) at org.eclipse.jface.window.Window.runEventLoop(Window.java:818) at org.eclipse.jface.window.Window.open(Window.java:794) at eu.etaxonomy.taxeditor.view.dataimport.e4.DataImportViewE4$1.widgetSelected(DataImportViewE4.java:183) at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:249) at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84) at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5227) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1340) at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4561) at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4151) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022) at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150) at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336) at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610) at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148) at eu.etaxonomy.taxeditor.Application.start(Application.java:24) at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673) at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610) at org.eclipse.equinox.launcher.Main.run(Main.java:1519) at org.eclipse.equinox.launcher.Main.main(Main.java:1492) !ENTRY org.eclipse.core.jobs 4 0 2019-11-28 15:35:15.747 !MESSAGE This is an unexpected error. Please contact EDIT Support (EditSupport@bgbm.org) with the error trace below (click on the 'Details' button). !STACK 0 java.lang.Exception: login : editor version : 5.12.0.qualifier server : () schema version : os : Linux 5.0.0-36-generic amd64 java : 1.8.0_131 org.eclipse.swt.SWTException: Invalid thread access at org.eclipse.swt.SWT.error(SWT.java:4533) at org.eclipse.swt.SWT.error(SWT.java:4448) at org.eclipse.swt.SWT.error(SWT.java:4419) at org.eclipse.swt.widgets.Widget.error(Widget.java:483) at org.eclipse.swt.widgets.Widget.checkWidget(Widget.java:421) at org.eclipse.swt.widgets.Text.setText(Text.java:2595) at eu.etaxonomy.taxeditor.view.dataimport.e4.SpecimenImportViewE4.query(SpecimenImportViewE4.java:127) at eu.etaxonomy.taxeditor.view.dataimport.e4.SpecimenSearchWizardE4$QueryJob.run(SpecimenSearchWizardE4.java:192) at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55) at eu.etaxonomy.taxeditor.model.MessagingUtils$1.run(MessagingUtils.java:286) at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35) at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182) at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4536) at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4154) at org.eclipse.jface.window.Window.runEventLoop(Window.java:818) at org.eclipse.jface.window.Window.open(Window.java:794) at eu.etaxonomy.taxeditor.view.dataimport.e4.DataImportViewE4$1.widgetSelected(DataImportViewE4.java:183) at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:249) at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84) at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5227) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1340) at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4561) at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4151) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022) at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150) at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336) at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610) at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148) at eu.etaxonomy.taxeditor.Application.start(Application.java:24) at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673) at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610) at org.eclipse.equinox.launcher.Main.run(Main.java:1519) at org.eclipse.equinox.launcher.Main.main(Main.java:1492)
Updated by Andreas Kohlbecker over 4 years ago
- Description updated (diff)
- Priority changed from New to Highest
- Severity changed from normal to blocker
An import of specimens is not possible wit the current code base in the development branch.
Updated by Andreas Kohlbecker over 4 years ago
- Target version changed from Unassigned CDM tickets to Release 5.12
Updated by Katja Luther over 4 years ago
- Status changed from New to In Progress
This is strange, I can not reproduce this with an editor started from the workspace, also when using the actual git develop version and connected to rem_conf_am. So it is difficult to debug.
Updated by Katja Luther over 4 years ago
- Status changed from In Progress to Resolved
- Assignee changed from Katja Luther to Andreas Kohlbecker
now it works again with the nightly build.
Updated by Andreas Kohlbecker over 4 years ago
- Status changed from Resolved to Closed
- % Done changed from 50 to 100
obviously works since this import has been used very often in the preparation phase for the workshop and in the workshop itself.