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task #8509

[PESI][ERMS] Export ERMS data to PESI

Added by Andreas Müller about 1 year ago. Updated 10 months ago.

Status:
In Progress
Priority:
Highest
Category:
cdmadapter
Target version:
Start date:
09/01/2019
Due date:
% Done:

0%

Severity:
normal
Tags:

Related issues

Related to Edit - bug #8508: [PESI][ERMS] ERMS import pipeline validation In Progress 09/01/2019
Related to Edit - feature request #8643: [PESI][FE] Adpat new PESI export to FE requirements In Progress 11/01/2019

Associated revisions

Revision 2c7f7f9b (diff)
Added by Andreas Müller about 1 year ago

ref #8509 changes to ERMS export activator

Revision 06039e15 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 update PesiExportActivatorERMS

Revision 0f099b94 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 handle ClassCastException for Kingdom taxa

Revision 308df7ca (diff)
Added by Andreas Müller about 1 year ago

ref #8509 fix synonym handling in PesiTransformer

Revision 6861320c (diff)
Added by Andreas Müller about 1 year ago

ref #8509 update PesiExportActivatorERMS

Revision 988f3c81 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 fix TaxonName id finding

Revision 7034419f (diff)
Added by Andreas Müller about 1 year ago

ref #8509 latest changes to PesiExportActivatorERMS

Revision ca169a1e (diff)
Added by Andreas Müller about 1 year ago

ref #8509 improve findKingdomIdFromTreeIndex

Revision a99910b1 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 link and notes for ERMS source export

Revision 6e9df385 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 better handling of trim in mappers

Revision 30643752 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 add DOI mapper

Revision 7efb614a (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 add last action mapping

Revision 66061a00 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 fix problems in TimePeriod mapping and toXXX method

Revision 2eaad1b1 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 LastAction(Date) handling for ERMS

Revision dc55d92e (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 Updates for ERMS reference handling

Revision b8911db5 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 fix lastAction handling for ERMS

Revision 0f44e94a (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 improve ZoologicalNameCacheStrategy for infraspecific ranks not being subspecies

Revision a7c1650e (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 improve ZoologicalNameCacheStrategy for infraspecific ranks not being subspecies

Revision b2956a5e (diff)
Added by Andreas Müller about 1 year ago

ref #8509 add Subterclass, Parvorder and Infrakingdom, adapt number for (sub)section, make (sub)division and (sub)phylum equal and some other improvements for rank handling

Revision 1030c26a (diff)
Added by Andreas Müller about 1 year ago

ref #8509 cleanup and handle nomCode not as class variable

Revision e91902c3 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 fix empty list bug for pesi RelTaxon export

Revision bee39571 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 add last action mapping to PesiDescriptionExport

Revision d8053698 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 reduce logging for multiple sources problem

Revision 3c993316 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 handle doEmpty tables for PesiDescriptionExport

Revision f953097d (diff)
Added by Andreas Müller about 1 year ago

ref #8509 adapt log4j.properties for PESI export

Revision d7f95f72 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 improve rank handling in ERMS pipeline

Revision 6535f3fe (diff)
Added by Andreas Müller about 1 year ago

ref #8509 latest changes to PesiExportActivatorERMS

Revision f8226169 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 improve rank handling in ERMS pipeline (II)

Revision 1437e192 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 improve isPesi taxon handling for export

Revision fa27ce80 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 improve ERMS distribution pipeline

Revision 7487f98f (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 improve ERMS vernacular name transformations

Revision 047b2976 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 some improvements on ERMS notes and source uses pipeline

Revision 405dc768 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 some improvements on ERMS taxon source pipeline

Revision 91408e53 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 increase number of taxa for description export partition

Revision c32dfb15 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 improve ERMS notes pipeline

Revision b42c7515 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 fix missing IsraeliExclusiveEconomicZone issue

Revision d3530340 (diff)
Added by Andreas Müller about 1 year ago

ref #8508, ref #8509, ref #1444 add additional taxon source handling for ERMS/PESI

Revision 03241a1f (diff)
Added by Andreas Müller about 1 year ago

ref #8509 fix missing rank for Biota

Revision 5a251c5c (diff)
Added by Andreas Müller about 1 year ago

ref #8509 fix RelTaxon export for ERMS / PESI

Revision f08f9f6d (diff)
Added by Andreas Müller about 1 year ago

ref #8508, ref #8509, ref #1444 fix source use for ERMS

Revision 2cb6ad67 (diff)
Added by Andreas Müller about 1 year ago

ref #8508, ref #8509, ref #1444 latest changes to ERMS import and export activators

Revision f0a9c28e (diff)
Added by Andreas Müller about 1 year ago

ref #8509 Adapt DbAnnotationMapper to work for PESI RelTaxon export

Revision 4ad2dc40 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 replace deprecated INameService.allRelationships for PESI RelTaxon export

Revision 365949cd (diff)
Added by Andreas Müller about 1 year ago

ref #8508, ref #8509, ref #1444 implement ERMS ref types

Revision 788f4a81 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 rename old PESI factual data exports

Revision aa30ebde (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 fix some import and export mappers

Revision 88f75039 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 add some import and export mappers

Revision f02afae4 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 new factory method for MethodMapper

Revision 5dc4b31d (diff)
Added by Andreas Müller about 1 year ago

ref #8509 some helper methods for ERMS export

Revision 7e6fc953 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 handle SpeciesExpertName in ERMS

Revision 2ae4e7ca (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 handle taxon.cacheCitation in ERMS

Revision 6ae21a57 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 fix link handling and add ecology export to ERMS pipeline

Revision c32ee6d2 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 adapt description source handling for ERMS export

Revision 17655285 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 fix ERMS image export to support multiple media

Revision 81dfc7e2 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 add CommonNameSource to doDelete for ERMS export

Revision 80911706 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 dependend IdIncMapper

Revision de3c38ba (diff)
Added by Andreas Müller about 1 year ago

ref #8509 fix link (and ecology) export ERMS

Revision 492451b1 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 handle truncated titlecaches in DbObjectMapper correctly

Revision effd09f0 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 handle non-default language textdata correctly in DbTextDataMapper

Revision a1340c69 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 handle rank, kingdom and code correctly for Biota and Monera

Revision 9bb5ffae (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 handle truncated reference cache correctly

Revision 383b85b1 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 fix missing non-default language notes

Revision 33337032 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509, ref #8508 handle NomenclaturalStatusType in ERMS pipeline

Revision 95c828bc (diff)
Added by Andreas Müller about 1 year ago

ref #8509 fix NPE in getAnnotations(by type-uuid)

Revision 8588c491 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 move ERMS synonym taxon relationship uuids to TaxonRelationship class

Revision 7dcac868 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 add missing misapplied name and pro parte synonym relations to PESI export

Revision b607fa1a (diff)
Added by Andreas Müller about 1 year ago

ref #8509 handle doubtful NomenclaturalStatusType.COMB_NOV() to PESI export

Revision 397a8033 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8508, ref #8509 move synonymTaxonRelationshiptype uuid to TaxonRelationship class

Revision 75f6d666 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 add included taxon relationship export to PESI

Revision b8fc4ee4 (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 adapt IncludedInMapper and TaxonRelationshipType uuid access to ERMS needs

Revision 787b3ec2 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 cleanup rank handling in PesiTranformer

Revision 22e0d6ae (diff)
Added by Andreas Müller about 1 year ago

ref #8509 use EnumSet instead of BitSet for source definition

Revision 58cd368c (diff)
Added by Andreas Müller about 1 year ago

ref #8509 use kingdomId to define rank for PESI export

Revision 855ea64a (diff)
Added by Andreas Müller about 1 year ago

ref #1444, ref #8509 add defined vocabulary to ERMS areas

Revision 1f9eb0e0 (diff)
Added by Andreas Müller about 1 year ago

ref #8509 fix trailing whitespace for reference titleCaches

Revision d9f92b40 (diff)
Added by Andreas Müller about 1 year ago

ref #8509, ref #8508 some fixes to E+M PESI export and validation

Revision 891031f6 (diff)
Added by Andreas Müller about 1 year ago

ref #8509, ref #8508 some fixes to E+M PESI export and validation

Revision c44a40e4 (diff)
Added by Andreas Müller 10 months ago

ref #8509 fix taxonStatus export for ERMS

Revision bd4c4dee (diff)
Added by Andreas Müller 10 months ago

ref #1444, #8509 fix pipeline handling in ErmsImportActivator

Revision 0d26082d (diff)
Added by Andreas Müller 10 months ago

ref #8509 handle new ERMS quality status "Thematic Editor"

Revision 744bd412 (diff)
Added by Andreas Müller 10 months ago

ref #8509 improve tagged names handling in PESI export (ERMS and others)

Revision 0e601fdc (diff)
Added by Andreas Müller 10 months ago

ref #8509 fix sourceFk handling in PESI taxon export

Revision 3d6c7bfc (diff)
Added by Andreas Müller 10 months ago

ref #1444, ref #8508, ref #8509 fix ERMS taxon status handling

History

#1 Updated by Andreas Müller about 1 year ago

  • Priority changed from New to Highest

#2 Updated by Andreas Müller about 1 year ago

  • Subject changed from [PESI][ERMS] Import ERMS data to CDM to [PESI][ERMS] Export ERMS data to PESI

#4 Updated by Andreas Müller about 1 year ago

  • Related to bug #8508: [PESI][ERMS] ERMS import pipeline validation added

#5 Updated by Andreas Müller 12 months ago

#6 Updated by Andreas Müller 11 months ago

  • Status changed from New to In Progress

#7 Updated by Andreas Müller 10 months ago

  • Tags set to erms

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