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From 08/08/2018 to 09/06/2018

09/06/2018

09:39 PM feature request #7706 (Closed): Warning for reused Media is missing
create several follow up tickets (#7732, #7733, #7734) Katja Luther
09:39 PM bug #7735 (New): reusing media in the DescriptionElementDetailsView
copied from #7706:
reusing media in the DescriptionElementDetailsView is not yet possible but should (the multiple...
Katja Luther
09:38 PM bug #7734 (New): show warning for multiple usage also if the reference is not persisted yet
copied from #7706:
when the new reference to a persisted and linked media object is not yet saved no warning is sh...
Katja Luther
09:35 PM bug #7733 (New): show warning for multiple usage of media for SpecimenMedia
copied from #7706:
the warning is not shown in the Specimen Tree Editor for Media specimen. This is probably becau...
Katja Luther
09:33 PM bug #7732 (New): layout issues for the media details view
copied from #7706:

* layout: the form type changer is not moved down and now appears beside the warning. This ...
Katja Luther
09:29 PM bug #7728 (Closed): NPE in wizard when changing type of reference
Katja Luther
09:29 PM bug #7728: NPE in wizard when changing type of reference
works fine. This was something like a copy&paste error because only the indention should be removed Katja Luther
03:54 PM bug #7728 (Resolved): NPE in wizard when changing type of reference
Applied in changeset commit:taxeditor|656cc90a6ba5dbe24426373b9043fe92413bdcb2. Patrick Plitzner
03:52 PM bug #7728: NPE in wizard when changing type of reference
The class DateElement has a DisposeListener that disposes of the cdmFormFactory. But this is not how it should be han... Patrick Plitzner
03:18 PM bug #7728: NPE in wizard when changing type of reference
Patrick Plitzner wrote:
> It actually does not have anything to do with which type you choose or if it is an in-refe...
Patrick Plitzner
03:02 PM bug #7728: NPE in wizard when changing type of reference
It actually does not have anything to do with which type you choose or if it is an in-reference. The error can be rep... Patrick Plitzner
02:58 PM bug #7728: NPE in wizard when changing type of reference
Patrick Plitzner wrote:
> I cannot reproduce this. What exactly did you do?
>
> I opened a taxon in the name edi...
Patrick Plitzner
02:58 PM bug #7728: NPE in wizard when changing type of reference
open a reference and create a new inReference, set the type to webPage, after finish go back to the first reference a... Katja Luther
02:56 PM bug #7728: NPE in wizard when changing type of reference
I cannot reproduce this. What exactly did you do?
I opened a taxon in the name editor -> Opened the reference wiz...
Patrick Plitzner
01:04 PM bug #7728: NPE in wizard when changing type of reference
This problem is caused by a cdmFormFactory which is set to disposed. at the moment we handle widget is disposed excep... Katja Luther
12:59 PM bug #7728 (Closed): NPE in wizard when changing type of reference
Hallo Katja,
Beim Öffnen einer In-Referenz einer Referenz, die selber bereits im Dialog geöffnet ist, kam reproduz...
Katja Luther
09:06 PM bug #3535 (Resolved): Automatically update descriptive view if content changed
Katja Luther
09:06 PM bug #3535: Automatically update descriptive view if content changed
this ticket is fixed, created a new ticket for not moving image galleries ( #7731) and for the same moving functional... Katja Luther
10:22 AM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> Note: when moving full description to another taxon the new label of the description is: "El...
Katja Luther
10:14 AM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> Now, the fact is not removed from the old taxon. Only closing and reopening the taxon remove...
Katja Luther
09:40 AM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> Note: the selection dialog for the target taxon does show the "start" taxon too. This is not...
Katja Luther
09:33 AM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> Katja Luther wrote:
> > this fix was only for the menu entry in taxonnavigator, but I will ...
Katja Luther
08:42 AM bug #3535: Automatically update descriptive view if content changed
But then we should separately allow to also move media/image galleries. Otherwise it is difficult to handle images wh... Andreas Müller
08:05 AM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> By the way, moving facts also moves image galleries. For the user this might be unexpected a...
Andreas Kohlbecker
09:06 PM bug #7731 (New): service method for moving descriptions should not move image galleries
this is a follow up ticket for #3535#note-16 Katja Luther
09:04 PM feature request #7730 (New): Add moving functionality to media view
this is a follow up ticket from #3535#note-18 Katja Luther
08:54 PM feature request #7433 (In Progress): new service method to get specimen by genetic AccessionNumber
Katja Luther
08:52 PM bug #5394 (Rejected): Test if synonyms are imported correctly with ABCD import
Katja Luther
08:44 PM feature request #7694 (Duplicate): cdmlight export output of types needs to be adapted
Katja Luther
10:15 AM feature request #7694 (In Progress): cdmlight export output of types needs to be adapted
This is already in progress I guess, together with #7700. How far are these duplicates and how far is this ticket res... Andreas Müller
08:43 PM Revision 42c0aaf3 (cdmlib): code cleaning
Katja Luther
07:23 PM Revision 782d98d9 (cdmlib): add TypeDesignationComparator
Katja Luther
06:53 PM Revision e7f22f90 (cdmlib): fix TypeDesignationSetManagerTest by sorting typeDesignations
Katja Luther
06:35 PM feature request #7599 (In Progress): treeView for specimen data in dataportal
Katja Luther
06:35 PM feature request #7599: treeView for specimen data in dataportal
the php issues should be solved and the tree view is shown now. Katja Luther
06:11 PM feature request #7599: treeView for specimen data in dataportal
further minor php problems at the example of http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/ta... Andreas Kohlbecker
02:38 PM feature request #7599: treeView for specimen data in dataportal
php notice in http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/1ad7630a-290b-464f-99e3-43... Andreas Kohlbecker
02:19 PM feature request #7599: treeView for specimen data in dataportal
Andreas Kohlbecker wrote:
> sollte eigentlich nicht in `_description_list_group_add()` hinein. Besser den link sch...
Andreas Kohlbecker
02:18 PM feature request #7599: treeView for specimen data in dataportal
2)
diese neue Funktionalität in `modules/cdm_dataportal/includes/pre-drupal8.inc`
~~~php
if (strpos($desc...
Andreas Kohlbecker
06:30 PM Revision 9a124e57 (cdm-dataportal): fix problems in pages.inc
Katja Luther
06:18 PM bug #7729 (New): potential ehcache CacheConfiguration problem
the below warnings are reported frequently. ~~Interestingly it happens often short before the server freezes due to o... Andreas Kohlbecker
06:09 PM Revision 59781fc6 (cdm-dataportal): fix problems in pages.inc
Katja Luther
03:54 PM Revision 7b690399 (taxeditor): ref #7728 Removed unused toolkit member
Patrick Plitzner
03:53 PM Revision 656cc90a (taxeditor): fix #7728 Fix initialisation of form toolkit in DateElement
Patrick Plitzner
03:50 PM Revision ca542a03 (cdmlib): ref #7644 fix getYear() in test
Andreas Müller
03:45 PM feature request #7658: use new taxon relationship DTO webservice in portal
& handling does not yet work correctly in teams. Probably a formatter issue #7666.
![](picture944-1.png)
Andreas Müller
03:38 PM feature request #7658: use new taxon relationship DTO webservice in portal
Deduplication must NOT take place if the rel. sec. differs (e.g. only one of the MANs has a rel. sec.). This is not y... Andreas Müller
03:30 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Strange, with this entry:
>
> the webservice even does not return a second entry though i...
Andreas Müller
03:27 PM feature request #7658: use new taxon relationship DTO webservice in portal
Strange, with this entry:
![](picture38-1.png)
the webservice even does not return a second entry though it exi...
Andreas Müller
02:46 PM feature request #7658: use new taxon relationship DTO webservice in portal
But it works when adding an explicit sensu reference. But explicit sensu is not a requirement. Andreas Müller
02:44 PM feature request #7658: use new taxon relationship DTO webservice in portal
Exception for second MAN of Achillea santolinoides Lag.
![](picture970-1.png)
for this data on test.cyprus
!...
Andreas Müller
02:31 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
Does not yet work for pro parte and partial MANs. Andreas Müller
03:44 PM bug #6276: Nomenclatural references show parsed date string instead of publication year
Sorry, wrong ticket Andreas Müller
03:36 PM Revision de769b0a (cdmlib): adapt OccurrenceController to changes in OccurrenceService
Katja Luther
03:24 PM Revision dabc3001 (cdmlib): cleanup
Andreas Müller
03:21 PM Revision 484a120f (cdmlib): minor
Katja Luther
03:14 PM Revision 86459d9e (cdmlib): fix TypeDesignationSetManager, use values of map of typeDesignations ...
Katja Luther
03:01 PM Revision f710aa8b (cdmlib): ref #7644 handle continued in getYear()
Andreas Müller
02:41 PM Revision 3f6d782a (cdmlib): ref #7599: further improvement for specimenDtos
Katja Luther
01:52 PM bug #7585 (Closed): RegistrationCuratorRoleProbe does not only check the ROLE_CURATION
Andreas Kohlbecker
01:51 PM bug #7585 (Resolved): RegistrationCuratorRoleProbe does not only check the ROLE_CURATION
Applied in changeset commit:cdm-vaadin|e080f6ded006655d94a94b876eb9c1fb2143d60f. Andreas Kohlbecker
01:51 PM Revision e080f6de (cdm-vaadin): fix #7585 replacing RegistrationCuratorRoleProbe by RoleProber
Andreas Kohlbecker
01:49 PM feature request #6351 (Closed): jenkins cdmserver-index-job.groovy supports http basic authentic...
Andreas Kohlbecker
11:56 AM feature request #6351 (Worksforme): jenkins cdmserver-index-job.groovy supports http basic authe...
this is already implemented Andreas Kohlbecker
01:37 PM bug #6850 (Resolved): NPE when clearing label of "kind of" term in TermEditor
Patrick Plitzner
08:49 AM bug #6850: NPE when clearing label of "kind of" term in TermEditor
Let's call it different: show the current titleCache, and for a completely empty term the Class+UUID will be generate... Andreas Müller
08:42 AM bug #6850: NPE when clearing label of "kind of" term in TermEditor
So you want the default titleCache (class + UUID) to be shown everywhere except the text field, correct? Patrick Plitzner
01:36 PM Revision 2aa1d458 (taxeditor): ref #6850 Fix label for null value
Patrick Plitzner
01:36 PM Revision 59d36b0c (cdmlib): fix bugs in abcd import
Katja Luther
01:19 PM feature request #7680: Refactor TaxonNodeDetailElement
the functionality is available now, but as described in the comment above we would need the functionality to create a... Katja Luther
12:53 PM feature request #7717: Implement "continued" in TimePeriod UI
Andreas Müller wrote:
> Best would be to not show the "end" line at all if continued == true
I think it is cleare...
Katja Luther
12:51 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
Applied in changeset commit:taxeditor|a1fbc94af7ad08a851eb87b92e7b8aa34b1f6a89. Katja Luther
12:51 PM Revision a1fbc94a (taxeditor): fix #7717: color of end fields in partial element are grey if disa...
Katja Luther
12:30 PM bug #7500: Can't open both related accepted taxa of reused MAN
now the chooseAcceptedTaxon dialog also used if a taxon is used as MAN and accepted taxon Katja Luther
11:47 AM bug #7500: Can't open both related accepted taxa of reused MAN
?? Andreas Müller
12:30 PM Revision f572c5c1 (taxeditor): fix #7500: adapt chooseAcceptedTaxon dialog also for taxa used as ...
Katja Luther
12:30 PM Revision 957dce80 (taxeditor): ref #7717: parse field should not be updated if it is the event so...
Katja Luther
12:15 PM feature request #7727 (New): Server availability indication in TaxEditor
Split from #5209:
We may also think about having a status line icon/label which permanently (every 2-3 seconds) ch...
Andreas Müller
12:06 PM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" ...
Applied in changeset commit:taxeditor|9f90442961085aa4cca97151bca3ba19ac77520f. Patrick Plitzner
12:05 PM feature request #7726 (Closed): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in...
Patrick Plitzner
12:06 PM Revision 9f904429 (taxeditor): fix #7726 Change label of abbrev cache
Patrick Plitzner
12:05 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRe...
is this a duplicate for #7658? If yes it can be closed as duplicate. Andreas Müller
11:58 AM Revision 308f7bf5 (taxeditor): Remove unused methods
Patrick Plitzner
11:56 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
This is critical for version 5.4 as needed for E+M Andreas Müller
11:53 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
Why has this been moved? It was for review. Andreas Müller
11:51 AM feature request #7725: Implement server availability check
Andreas Kohlbecker wrote:
> Using the same service endpoint, with a HTTP HEAD requests you will check for the availa...
Andreas Müller
10:48 AM feature request #7725: Implement server availability check
> We may also want to have 2 services, one for checking availability of the server (without DB check) and one checkin... Andreas Kohlbecker
10:31 AM feature request #7725 (New): Implement server availability check
Split from #5209:
Applications may need to check if the server is available.
These services could be used for t...
Patrick Plitzner
11:47 AM Revision 750e9e69 (cdmlib): fix TypeDesignationSetManager
Katja Luther
11:09 AM Revision bb76e361 (cdmlib): getTypeDesignations in TypeDesignationSetManager should return a coll...
Katja Luther
10:49 AM Revision 86bb4af4 (cdmlib): move createShortCitation to ReferenceCacheStrategy
Katja Luther
10:47 AM feature request #5209: Improve server availability check
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Shouldn't we split this ticket. This one stays a "how to handle...
Andreas Müller
10:31 AM feature request #5209: Improve server availability check
Andreas Müller wrote:
> Shouldn't we split this ticket. This one stays a "how to handle the exception" best ticket.
...
Patrick Plitzner
10:22 AM feature request #5209: Improve server availability check
Shouldn't we split this ticket. This one stays a "how to handle the exception" best ticket.
And then we need a sep...
Andreas Müller
08:05 AM feature request #5209: Improve server availability check
Copied from #6355:
In the above case the interruption took place during lazy initialization:
~~~
login : w.ber...
Patrick Plitzner
08:04 AM feature request #5209 (New): Improve server availability check
Copied from #6355:
Andreas M.:
"wie schon öfters erwähnt, sollten wir hier ja versuchen, eine nutzerfreundlichere...
Patrick Plitzner
08:01 AM feature request #5209 (Duplicate): Improve server availability check
Patrick Plitzner
10:22 AM Revision 96bf5e90 (taxeditor): ref #3535: change move message for facts
Katja Luther
10:13 AM Revision 03c03694 (taxeditor): ref #3535: update both name editors after moving description oder ...
Katja Luther
09:57 AM bug #5430 (New): P2 update of Taxonomic Editor bundled with JRE does not work
Patrick Plitzner
09:51 AM feature request #7669 (In Progress): Greece import Willing images
Andreas Müller
09:39 AM Revision 5bfd26ae (taxeditor): ref #3535: source taxon should not be selectable for move descript...
Katja Luther
09:39 AM Revision 62214ec0 (taxeditor): ref #3535: source taxon should not be selectable for target of mo...
Katja Luther
08:01 AM task #6736 (Duplicate): Handle server not available user friendly
Patrick Plitzner
08:01 AM bug #6355 (Duplicate): Improve message if server is down
Patrick Plitzner

09/05/2018

11:24 PM bug #7677 (Closed): Nomenclatural Status is always set to nom illeg in details view
It seems to work now as expected. Andreas Müller
04:27 PM feature request #7717 (Feedback): Implement "continued" in TimePeriod UI
Andreas Müller
03:57 PM feature request #7717: Implement "continued" in TimePeriod UI
Best would be to not show the "end" line at all if continued == true Andreas Müller
03:55 PM feature request #7717: Implement "continued" in TimePeriod UI
Also I would move the continued flag up, before "End" as it is something inbetween start and end. This may make the b... Andreas Müller
03:50 PM feature request #7717: Implement "continued" in TimePeriod UI
I don't know if this is related, but when entering data into the parse field now, the cursor always jumps to the begi... Andreas Müller
12:59 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
Katja Luther
12:59 PM feature request #7717 (New): Implement "continued" in TimePeriod UI
the continued flag is implemented in editor now. at the moment the end date is removed when the continued flag is set... Katja Luther
12:56 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
Applied in changeset commit:taxeditor|f36a68ee91d7e3c3c8365b13507c25af4da48b81. Katja Luther
03:56 PM feature request #7599: treeView for specimen data in dataportal
Review Result:
1)
* method `create_cdm_specimen_or_observation()` needs either be named `render_cdm_specimen_o...
Andreas Kohlbecker
03:42 PM feature request #7599 (Resolved): treeView for specimen data in dataportal
starting review
Andreas Kohlbecker
03:43 PM bug #3535: Automatically update descriptive view if content changed
By the way, moving facts also moves image galleries. For the user this might be unexpected as for the user it is not ... Andreas Müller
03:39 PM bug #3535: Automatically update descriptive view if content changed
Katja Luther wrote:
> this fix was only for the menu entry in taxonnavigator, but I will have a look at the problems...
Andreas Müller
03:31 PM bug #3535: Automatically update descriptive view if content changed
Upps, even more critical. Even selecting "Cancel" does not cancel the operation but still saves the target data and a... Andreas Müller
03:18 PM bug #3535: Automatically update descriptive view if content changed
this fix was only for the menu entry in taxonnavigator, but I will have a look at the problems in factual data view. Katja Luther
02:55 PM bug #3535: Automatically update descriptive view if content changed
If the target taxon is dirty and unsaved and gives a warning. It says ".... all other unsaved changes will be saved".... Andreas Müller
02:46 PM bug #3535: Automatically update descriptive view if content changed
Andreas Müller wrote:
> Now, the fact is not removed from the old taxon. Only closing and reopening the taxon remove...
Andreas Müller
02:43 PM bug #3535: Automatically update descriptive view if content changed
Note: ~~~when moving full description to another taxon the new label of the description is: "Elements moved from ..."... Andreas Müller
02:41 PM bug #3535: Automatically update descriptive view if content changed
Moving the full description seems to work correctly. Andreas Müller
02:36 PM bug #3535 (Feedback): Automatically update descriptive view if content changed
~~~Now, the fact is not removed from the old taxon. Only closing and reopening the taxon removes it.
I tested this f...
Andreas Müller
02:32 PM bug #3535: Automatically update descriptive view if content changed
Note: ~~the selection dialog for the target taxon does show the "start" taxon too. This is not needed and should be f... Andreas Müller
03:42 PM bug #7722 (Closed): NamePopupEditor: validation not working for rank genus
perfect ! Wolf-Henning Kusber
02:47 PM bug #7722: NamePopupEditor: validation not working for rank genus
solved, please review Andreas Kohlbecker
02:46 PM bug #7722 (Resolved): NamePopupEditor: validation not working for rank genus
Applied in changeset commit:cdm-vaadin|e8e0ad3ba36e287dc5fc1c398bc505f3f0a5a38e. Andreas Kohlbecker
02:04 PM bug #7722: NamePopupEditor: validation not working for rank genus
It could be that people validate higher rank names, too. Wolf-Henning Kusber
03:05 PM feature request #7700: use TypeDesignationSetManager for creating typedesignation string in cdmli...
the mail from WB:
Hallo,
habe mir das angesehen. Es gibt ja praktisch 3 Fälle.
1. Gesamte information ist im ...
Katja Luther
03:03 PM feature request #7700 (Resolved): use TypeDesignationSetManager for creating typedesignation stri...
Katja Luther
03:03 PM Revision 12266827 (cdmlib): ref #7700: fide and parenthesis are separated separators in taggedText
Katja Luther
03:01 PM Revision d847eb88 (cdmlib): ref #7700: use TypedesignationSetManager for creating TypeDesignatio...
Katja Luther
02:53 PM Revision 0405e234 (cdmlib): ref #7700: use TypedesignationSetManager for creating TypeDesignatio...
Katja Luther
02:46 PM Revision e8e0ad3b (cdm-vaadin): fix #7722 removing rank limitation for validations in name editor
Andreas Kohlbecker
02:27 PM bug #6742: IAE when using "Link with taxon selection" in Specimen-Editor
I did not get the IAE anymore but also could not create any result. I tried to
* Select or not select a taxon in ...
Andreas Müller
01:59 PM bug #4573 (Closed): Handle duplicate username, group or grantedAuthority correctly
Works fine Andreas Müller
01:49 PM feature request #7712 (Closed): PhycoBank UI Reference detail size
perfect! Wolf-Henning Kusber
01:48 PM feature request #7624 (Closed): Note field for Reference in Vaadin
Perfect! Wolf-Henning Kusber
11:11 AM feature request #7624: Note field for Reference in Vaadin
please review Andreas Kohlbecker
01:45 PM bug #7724 (New): PatternSyntaxException in GrantedAuthority search dialog
See stacktrace. I looked at the code and wondered why first ALL GAs are loaded and then compared via regex. Is this s... Andreas Müller
01:41 PM Revision 0c40f20e (taxeditor): cleanup
Andreas Müller
01:22 PM feature request #6475 (Closed): Make specimen tree editor collapsable and expandable
Seems to work (though it took me some time to find the buttons. But it is general RCP way of putting them so it shoul... Andreas Müller
12:56 PM Revision f36a68ee (taxeditor): fix #7717: add continued flag to timeperiod ui
Katja Luther
12:48 PM bug #6850: NPE when clearing label of "kind of" term in TermEditor
Generally this seems to work now. I also could not reproduce.
Only related issue: with empty label the label refre...
Andreas Müller
12:37 PM bug #7371 (Closed): Deleting Polytomous Key throws NPE
Works fine with nightly. Andreas Müller
12:22 PM bug #7371 (Resolved): Deleting Polytomous Key throws NPE
... upps sorry, looks like I tested with production on test server , will test again Andreas Müller
12:21 PM bug #7371 (Feedback): Deleting Polytomous Key throws NPE
I still get
~~~
login : admin
editor version : 5.2.1
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
...
Andreas Müller
12:35 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
Katja Luther wrote:
> if the continued flag is set and then setContinued(false) is called, this.end should be set to...
Andreas Müller
12:24 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
if the continued flag is set and then setContinued(false) is called, this.end should be set to null Katja Luther
09:22 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
Can you please review? (Katja can you maybe also shortly review?) Andreas Müller
12:03 PM bug #7622 (Closed): RegistrationWorkingsetEditor: navigating to other pages with fresh registrati...
no empty registrations since this has been fixed. Andreas Kohlbecker
12:02 PM bug #7622: RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leave...
this was originally a dataportal ticket which has erroneously be overwritten with other information. There is a new t... Andreas Kohlbecker
12:01 PM bug #7667: NoHttpResponseException for large queries in bulk editor
Difficult to test. Currently the test server does not respond very often. So it can't be decided if this is related.
...
Andreas Müller
11:54 AM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement
Applied in changeset commit:taxeditor|d2c62a2b15901df2b03ad04d2f384f523d781492. Katja Luther
09:20 AM feature request #7715: Description sources should be handled same as DescriptionElement
The section is called "Description Sources" we should either relabel them "References" as in DescriptionElementDetail... Andreas Müller
09:14 AM feature request #7715: Description sources should be handled same as DescriptionElement
Generally we need to discuss if moving the sources from Supplemental Data to Details View means removing them at firs... Andreas Müller
09:12 AM feature request #7715 (Feedback): Description sources should be handled same as DescriptionElement
Generally it works, but there comes a selection dialog for choosing the source type. This needs to be removed as for ... Andreas Müller
11:54 AM Revision d2c62a2b (taxeditor): fix #7715: set title to reference and remove selection dialog for ...
Katja Luther
11:52 AM bug #7699: NPE when searching for specimen in bulk editor
Added AK as this is maybe a general ticket about handling of disposed in CdmTransientEntityCacher so might be interes... Andreas Müller
11:50 AM bug #7699: NPE when searching for specimen in bulk editor
It still exists sometimes
~~~
login :
editor version : 5.3.0.201809042248
server : ()
schema version :
os...
Andreas Müller
11:35 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
I can't reproduce this exception, I tested with nightly and rem_conf_am Katja Luther
10:43 AM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor
Adding an external link throws NPE
~~~
login : admin
editor version : 5.3.0.201809042248
server : test.e-taxon...
Andreas Müller
09:14 AM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor
Katja Luther
11:25 AM bug #7294: keys block can not be disabled in tabless taxon page
review after release Andreas Kohlbecker
11:25 AM bug #7691: Empty "Bibliography" section
review after release Andreas Kohlbecker
11:21 AM bug #7582 (Duplicate): prevent from creating empty registrations
Andreas Kohlbecker
11:12 AM bug #7702 (Closed): corrupted hibernate session after previous error during save operation
hard to review - time will show - closing ticket Andreas Kohlbecker
10:58 AM feature request #7412 (Closed): Allow editing supplemental data for DescriptiveDataSets
Seems to work as expected Andreas Müller
10:58 AM Revision 7a187dd5 (cdm-dataportal): adapting Cichorieae_SearchTest to modified tagged text proces...
Andreas Kohlbecker
10:18 AM Revision 2cdf2e95 (cdm-server): adjusting loglevel of bean initializers
Andreas Kohlbecker
10:15 AM bug #7484 (Closed): Protected titleCache handling not correct in Reference detail view
This specific issue seems to work consistent now.
General review of titleCache behavior is still open for review ...
Andreas Müller
09:58 AM Revision 370ab182 (cdmlib): avoiding too extensive logging by commenting all hardcoded loglevels
Andreas Kohlbecker
09:39 AM Revision d3719f12 (cdm-dataportal): skipping table cell creation for null media in compose_cdm_me...
Andreas Kohlbecker
09:01 AM feature request #7706: Warning for reused Media is missing
Is there a Media editing dialog at all? I was searching to check if the warning also works there but didn't find any.... Andreas Müller
08:50 AM feature request #7706 (Feedback): Warning for reused Media is missing
Generally the ticket can be closed as it works if the above issues are either closed or moved to a new ticket. Andreas Müller
08:49 AM feature request #7706: Warning for reused Media is missing
Generally it works but there are some questions regarding various issues:
* layout: the form type changer is not ...
Andreas Müller
08:48 AM Revision 361d492e (cdm-dataportal): adapting tests to modified synonymy page dom
Andreas Kohlbecker
07:56 AM bug #7698: CCE when creating new datasource
works fine Andreas Müller
07:55 AM bug #7698 (Closed): CCE when creating new datasource
Andreas Müller

09/04/2018

06:03 PM bug #7723 (Closed): PhycoBank unpublished data must not be visible in Portal
Unpublished data visible in Portal, not in scientific name search, but as list under a reference including published ... Wolf-Henning Kusber
06:02 PM Revision 644a7b6e (cdm-dataportal): fixing typeDesignation sort order
Andreas Kohlbecker
04:34 PM bug #7722 (Feedback): NamePopupEditor: validation not working for rank genus
the validation has explicitly limited to ranks at SpeciesOrBelow. Is it sufficient to also include genus an below or ... Andreas Kohlbecker
02:03 PM bug #7722 (Closed): NamePopupEditor: validation not working for rank genus
Validation button of genus without function (basionym, replaced syn. okay)
![] (picture672-1.png)
Wolf-Henning Kusber
04:01 PM bug #7582 (Resolved): prevent from creating empty registrations
this has been solved mean while. Add according commits to the issue and close it. Andreas Kohlbecker
04:00 PM feature request #7712: PhycoBank UI Reference detail size
fixed, please review Andreas Kohlbecker
04:00 PM feature request #7712 (Resolved): PhycoBank UI Reference detail size
Applied in changeset commit:cdm-vaadin|8626f58493068136e66ff322a6834ce24cf53310. Andreas Kohlbecker
12:03 PM feature request #7712: PhycoBank UI Reference detail size
place citation detail below reference field and make both 100%wide Andreas Kohlbecker
04:00 PM Revision 8626f584 (cdm-vaadin): fix #7712 more space for the citation detail in name editor
Andreas Kohlbecker
03:17 PM feature request #7624 (Resolved): Note field for Reference in Vaadin
Applied in changeset commit:cdm-vaadin|85743e03023024ec6a9d0449fa91aa6bc08f5f6e. Andreas Kohlbecker
03:17 PM Revision 85743e03 (cdm-vaadin): fix #7624 notes field for the RegistrationPopupEditor implemented
Andreas Kohlbecker
03:16 PM feature request #7600: public setters for entity collections
with commmit:a55fe58a I implemented the suggested setter for annotations. This implementation is not generic and shou... Andreas Kohlbecker
03:14 PM Revision a55fe58a (cdmlib): ref #7600 implementing setAnnotations()
Andreas Kohlbecker
02:30 PM Revision 13bd883d (cdm-dataportal): ref #7658, ref #7720 restoring css rule for .relation_sign
Andreas Kohlbecker
01:59 PM bug #7721 (Rejected): Contraint Violation Exception on saving Reference Popup Editor

der Fehler trat auf, als in einem Workingset in Vaadin in einer Referenz eine Section angelegt worden war (Submitte...
Andreas Kohlbecker
01:58 PM feature request #7706 (Resolved): Warning for reused Media is missing
please review Katja Luther
01:57 PM Revision ad31468a (taxeditor): ref #7706: add warning if media is referenced by more than one object
Katja Luther
01:49 PM feature request #7644 (Resolved): Add "continued" flag to (Verbatim)Timeperiod
Applied in changeset commit:cdmlib|72b0e291fb98b3dcab357b7b5f0160bb8818a000. Andreas Müller
09:52 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
We may not need a model change for this.
Instead we use a defined constant end date 9999-12-30 witch stands for "c...
Andreas Müller
01:49 PM Revision 72b0e291 (cdmlib): fix #7644 fix failing test in parser and add "continued" parsing to a...
Andreas Müller
01:44 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
implementation complete, please review Andreas Kohlbecker
01:43 PM feature request #7720 (Resolved): use new taxonRelationshipsDTO webservice for all taxon relations
for details see #6682
since completion of #7658 the taxonRelationshipsDTO is used for misapplied names and invlali...
Andreas Kohlbecker
01:36 PM Revision 27c31249 (cdm-dataportal): ref #7658 test for invalid designation
Andreas Kohlbecker
01:24 PM bug #7719 (New): UX Problems with context menu access in Bulkeditors
in den Bulkeditoren kann man keine neuen Entities anlegen, ohne dass die Tabelle zu sehen ist.
Klickt man nicht auf...
Andreas Kohlbecker
12:58 PM Revision f659b3dd (cdm-dataportal): work in grogress - unfinished
Andreas Kohlbecker
12:58 PM Revision 2978b0c8 (cdm-dataportal): ref #7658 moving all tagged text functions to separate file
Andreas Kohlbecker
12:58 PM Revision a01ad6fe (cdm-dataportal): typos
Andreas Kohlbecker
12:58 PM Revision 116fb348 (cdm-dataportal): ref #7658 work in progress with errors
Andreas Kohlbecker
12:58 PM Revision 83dc60b9 (cdm-dataportal): ref #7658 adapting cdm_taxonRelationships() to new taxon rela...
- test case
- extending tagged text functions
- adapting misapplied name redering
Andreas Kohlbecker
12:58 PM Revision 67c8cca9 (cdm-dataportal): ref #7658 miapplied names and invalid designations modified t...
Andreas Kohlbecker
12:05 PM Revision c02da888 (cdm-dataportal): revert small bug coming with merge of feature/specimenportal
Katja Luther
11:17 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
Andreas Kohlbecker wrote:
> the NARROW_NO_BREAK is now a constant in the UTF8 class.
>
> But what about the
>
...
Andreas Müller
10:59 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
Andreas Müller wrote:
> should we change Assignee of this ticket?
No need to, the NARROW_NO_BREAK is now a consta...
Andreas Kohlbecker
09:45 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
should we change Assignee of this ticket? Andreas Müller
09:44 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
When implementing:
>add NARROW NO-BREAK (\u202F) after doubtful marker as requested in #5492
can you please add...
Andreas Müller
10:57 AM Revision 530b3394 (cdmlib): ref #7666 NARROW NO-BREAK in UTF8 class
Andreas Kohlbecker
10:46 AM Revision b3ac03bf (cdm-dataportal): merge develop into feature branch
Katja Luther
10:38 AM feature request #7718 (Closed): New Registration: Exclude irrelevant reference types from list of...
Problem 1
In einem WorkingSet (Buch) sind Dutzende Arten neu beschieben. Die Buchreferenz sollte ein mal vorhanden ...
Wolf-Henning Kusber
10:23 AM feature request #7717: Implement "continued" in TimePeriod UI
for the expected behavior see also TimePeriodTest.testContinued and .testToStringTimePeriod Andreas Müller
09:55 AM feature request #7717 (Closed): Implement "continued" in TimePeriod UI
The continued flag should be alternative to the end date. As described in #7644 either the flag is set or we have an ... Andreas Müller
10:22 AM Revision 0d330678 (cdmlib): ref #7644 some further fine tuning on setting CONTINUED/end date in ...
Andreas Müller
09:53 AM Revision 9e82319e (cdmlib): ref #7644 implement "continued" in TimePeriod, still missing for most...
Andreas Müller
09:51 AM Revision 52f57468 (cdm-dataportal): smaller changes in dna part of tree view
Katja Luther
09:40 AM feature request #5882: option (as new default) to show full citation of accepted name below taxon...
I can not really see why this **follows** the last scrutiny ticket.
**This** ticket is about nomenclatural referen...
Andreas Müller
09:34 AM Revision 5e7f22d8 (cdmlib): ref #7666 adding NARROW NO-BREAK after doubtful marker - adapting test
Andreas Kohlbecker
09:16 AM Revision b7f100e5 (cdmlib): ref #7666 adding NARROW NO-BREAK after doubtful marker
Andreas Kohlbecker

09/03/2018

10:41 PM Revision 8740b447 (cdmlib): next try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller
10:38 PM Revision f51e5bb0 (cdmlib): next try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller
09:51 PM Revision 2661d3b8 (cdmlib): try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller
09:51 PM Revision 9e0814ef (cdmlib): test trim in Excel import column recognition
Andreas Müller
09:14 PM Revision 539b7820 (cdmlib-apps): cleanup
Andreas Müller
09:09 PM Revision 9c82d689 (cdmlib): cleanup
Andreas Müller
07:56 PM Revision 2a6e6815 (cdmlib-apps): cleanup
Andreas Müller
07:54 PM Revision 0b9d6dad (cdmlib): cleanup
Andreas Müller
03:14 PM feature request #7412 (Resolved): Allow editing supplemental data for DescriptiveDataSets
Applied in changeset commit:taxeditor|0186b94d518629ffe1e2c7cb0c4ad0ee59605002. Patrick Plitzner
03:13 PM Revision 0186b94d (taxeditor): fix #7412 Allow editing supplemental data for DescriptiveDataSets
Patrick Plitzner
02:45 PM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement
Applied in changeset commit:taxeditor|472f773b8ac025f074ab28f5ef674533cda95717. Patrick Plitzner
11:53 AM feature request #7715 (Closed): Description sources should be handled same as DescriptionElement
Description sources are currently in supplemental data, DescriptionElement in Details view.
Both should be in Deta...
Andreas Müller
02:44 PM Revision 472f773b (taxeditor): fix #7715 Show sources for descriptions in DetailsView
Patrick Plitzner
02:28 PM bug #3992 (In Progress): [CHECK] Use last scrutiny instead of sec reference
Last scrutiny is now imported as sec references for those taxa having a last scrutiny information. Otherwise PTaxon.p... Andreas Müller
02:24 PM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
The former citations suggestions (deriving from the last scrutiny references, PTaxon.lastScrutinyFk) are now imported... Andreas Müller
01:33 PM Revision 29e233c6 (taxeditor): ref #7674 Add aggregated description directly to matrix after crea...
Patrick Plitzner
01:32 PM task #7553 (Closed): move TypeDesignationSetManagerIT to cdmlib
All tests on integration server where successful, so we can close this issue. Andreas Kohlbecker
12:12 PM task #7553 (Resolved): move TypeDesignationSetManagerIT to cdmlib
please review Katja Luther
12:11 PM Revision bcf6a056 (cdm-vaadin): ref #7553: delete TypeDesignationSetManagerIT from vaadin
Katja Luther
12:03 PM feature request #1847 (Rejected): Apply description sources (references) for a DescriptionBase to...
This is not primarily a taxeditor ticket therefore I close it but open a similar ticket for cdmlib services: #7716 Andreas Müller
12:01 PM bug #7716 (New): Apply description sources (references) for a DescriptionBase to all included des...
Currently webservices, exports, dataportal and aggregation algorithms do not include source of Description for Descri... Andreas Müller
11:46 AM Revision b527f05c (taxeditor): ref #7674 Show complete taxon hierarchy
Patrick Plitzner
11:45 AM Revision 18c8b6f9 (taxeditor): ref #7674 Change label and style for default description
Patrick Plitzner
11:43 AM Revision 9c0f743e (cdmlib): ref #7674 Change label of default description
Patrick Plitzner
11:00 AM feature request #674: Turn off all concept-related functionality in the Editor in Preferences
The idea is to simplify the UI for standard users Andreas Müller
10:48 AM Revision 1e444ccf (cdmlib): ref #7553: move TypeDesignationSetmanagerTest to cdmlib
Katja Luther
10:45 AM Revision 71571fbe (cdmlib-apps): ref #3992 adapt EuroMedActivator to last scrutiny changes
Andreas Müller
10:44 AM Revision 0d76bb7d (cdmlib-apps): add tests for occurrences sources with unwanted whitespaces
Andreas Müller
10:43 AM Revision d0c77267 (cdmlib-apps): ref #3992, ref #7713, ref #3990 add test for differing synonym r...
Andreas Müller
10:42 AM Revision d19ddd46 (cdmlib-apps): cleanup
Andreas Müller
10:42 AM Revision e1d0f581 (cdmlib-apps): ref #3992, ref #7713, ref #3990 Atomize last scrutiny references
Andreas Müller
10:24 AM Revision 57a2a42f (taxeditor): ref #7674 Adjust tree path according to default taxon description
Patrick Plitzner
10:23 AM Revision aac70fda (cdmlib): ref #7674 Add equals() and hashCode() to RowWrapperDTO
Patrick Plitzner
07:25 AM Revision fca09e81 (cdmlib): ref #7674 Fix initialization problems
Patrick Plitzner

09/01/2018

06:29 PM feature request #7714 (New): PhycoBank UI Restrictions for reference types
Do not allow registrations under Reference types "Journal", "Printseries"
1. there are nomenclatural acts in artic...
Wolf-Henning Kusber
09:17 AM task #7713: Atomize last scrutiny references
Find last scrutiny references not in use:
~~~
SELECT *
FROM Reference AS r
WHERE (RefId NOT IN
(SELECT L...
Andreas Müller
08:26 AM task #7713: Atomize last scrutiny references
~~~
SELECT RefId, Notes, RefYear, RefCategoryFk, RefCache, NomRefCache, PreliminaryFlag, InRefFk, Title, NomTitleAb...
Andreas Müller

08/31/2018

11:20 PM task #7713 (In Progress): Atomize last scrutiny references
Andreas Müller
11:17 PM task #7713 (In Progress): Atomize last scrutiny references
Last scrutiny references currently are all(?) flat and with protected cache. They should:
* ~~use inreferences (s...
Andreas Müller
06:46 PM Revision 5cfd066c (cdm-dataportal): ref #7658 test case for Nepenthes abalata
Andreas Kohlbecker
06:18 PM feature request #7712 (Closed): PhycoBank UI Reference detail size
Field "Reference detail" not long enough for standard entries,
e.g. 100, pl. 100, fig. 50-60 (see screen shot)
Prob...
Wolf-Henning Kusber
05:40 PM Revision 10e3087e (cdm-dataportal): ref #5753 adapting test to final decissions
Andreas Kohlbecker
05:16 PM Revision 41fb1151 (cdm-dataportal): more tests for misapplied names
Andreas Kohlbecker
04:34 PM Revision 0207cf2c (cdm-dataportal): updating selenium documentation by notes on compatible FF ver...
Andreas Kohlbecker
02:29 PM Revision 523a1fad (cdm-vaadin): removing debug code line
Andreas Kohlbecker
01:06 PM Revision 90f19d04 (cdmlib): code cleanig
Andreas Kohlbecker
01:06 PM Revision ec8f5e38 (cdmlib): code cleanig
Andreas Kohlbecker
12:03 PM Revision 1dc37073 (taxeditor): ref #7674 Create default taxon description when adding specimens
Patrick Plitzner
12:02 PM Revision 041e26e2 (cdmlib): ref #7674 Create default taxon description when adding specimens
Patrick Plitzner
11:08 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
Ok from this future perspective it makes sense to decouple the loading of the references and the display of the MANs.... Andreas Kohlbecker

08/30/2018

01:47 AM bug #7711 (New): Bugs in Media view
* when removing a Media from image gallery it is immediately saved but should be saved only after save command, inste... Andreas Müller
12:33 AM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of ...
I reverted using UUID as key in CdmEntityCacheKey because
* the eu.etaxonomy.cdm.cache.CdmTransientEntityCacher s...
Andreas Müller
03:13 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Kohlbecker wrote:
> I forgot one thing:
>
> I am a bit frightend about the change you made in the cacher ...
Andreas Müller
03:11 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
I discussed with Katja the handling of un-persisted objects. She also thinks that unpersisted objects should/are not ... Andreas Müller
02:20 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
I forgot one thing:
I am a bit frightend about the change you made in the cacher as this is touching an essential ...
Andreas Kohlbecker
02:17 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Müller wrote:
> Can you please check if this implementation solves your problems
My problem has been sol...
Andreas Kohlbecker
02:12 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Müller wrote:
> Is this on purpose assigned to me?
>
You are the default assignee for cdmlib, as this t...
Andreas Kohlbecker
02:10 PM bug #7709 (Feedback): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the...
Can you please check if this implementation solves your problems and if you generally agree with the implementation?
...
Andreas Müller
02:06 PM bug #7709 (Resolved): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the...
Applied in changeset commit:cdmlib|67ff6af5f4a24c899385e13c671c8071d301f3e7. Andreas Müller
01:39 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
With commit c5eb9820 I introduced more generics to the cacher (not yet 100% finished). Maybe we need to adapt externa... Andreas Müller
01:33 PM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of ...
Is this on purpose assigned to me?
If yes, please give more info what is meant by PersonField. PersonField is not ...
Andreas Müller
12:15 PM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of ...

the following code would fail:
~~~java
newP1 = Person.NewInstance();
newP2 = Person.NewInstance();
pf1 = ...
Andreas Kohlbecker
12:13 AM Revision 02d5f1f1 (taxeditor): cleanup and better use of generics
Andreas Müller
11:52 PM Revision b0538039 (cdmlib): javadoc, cleanup and rename permanentCacher
Andreas Müller
11:49 PM Revision 3c50e62a (cdmlib): javadoc, cleanup and rename permanentCacher
Andreas Müller
11:48 PM Revision 59259b05 (cdm-vaadin): rename permanentCacher setter
Andreas Müller
11:34 PM Revision 2c8b687b (taxeditor): cleanup
Andreas Müller
11:22 PM Revision df75b75c (cdmlib): ref #7709 remove NPE
Andreas Müller
11:12 PM Revision 7b74ba3d (taxeditor): ref #7709 use id instead of uuid for CdmEntityCacheKey in Conversa...
Andreas Müller
11:03 PM Revision 7ad7b0fa (cdmlib): ref #7709 cleanup CdmTransientEntityCacher
Andreas Müller
10:45 PM Revision 57e761cd (cdmlib): ref #7709 revert using uuid in CdmEntityCacheKey as key part
Andreas Müller
10:39 PM Revision 481d494a (cdmlib): cleanup
Andreas Müller
10:39 PM Revision 3c5c2395 (cdmlib): ref #7709 revert using uuid in CdmEntityCacheKey as
Andreas Müller
10:38 PM Revision 7b2e142b (taxeditor): ref #7709 use CdmBase constructor instead of class and id
Andreas Müller
10:38 PM Revision ed3f3e9a (taxeditor): cleanup
Andreas Müller
06:34 PM bug #7641 (Closed): Reference editor: Error when incerting several new authors into a new author ...
Test 1: #3, #6, 3.screenshot: fehlerhaftes Team komplett gelöscht und neu angelegt mit 2 Autoren aus der Liste und 2 ... Wolf-Henning Kusber
12:22 PM bug #7641: Reference editor: Error when incerting several new authors into a new author team
Problem solved, please test. Andreas Kohlbecker
12:20 PM bug #7641 (Resolved): Reference editor: Error when incerting several new authors into a new autho...
Applied in changeset commit:cdm-vaadin|fe3180d3be765b382f150b613f9936c711af9823. Andreas Kohlbecker
06:11 PM feature request #7666 (In Progress): Remaining issues for "Formatter and DTO for taxon relationsh...
Andreas Kohlbecker wrote:
> A disadvantage of the current implememtation of the taxon relationships webservice and D...
Andreas Müller
05:08 PM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
A disadvantage of the current implememtation of the taxon relationships webservice and DTO when being used in the dat... Andreas Kohlbecker
02:39 PM task #7553: move TypeDesignationSetManagerIT to cdmlib
Hallo Katja, könnntest du dieses ticket übernehmen?
Andreas
Andreas Kohlbecker
02:18 PM Revision b1b42293 (cdmlib): ref #7709 javadoc
Andreas Müller
01:47 PM Revision 67ff6af5 (cdmlib): fix #7709 use uuid instead of id for CdmEntityCacheKey
Andreas Müller
01:37 PM Revision 6dc22ea5 (cdmlib): minor
Andreas Müller
01:37 PM Revision c5eb9820 (cdmlib): ref #7709 use more generics for CdmCacher (not completed yet)
Andreas Müller
01:30 PM bug #7710 (New): Server info is missing in case of RemoteAccessException
The method `MessagingUtils.getContextInfo()` generates the info.
It seems like `CdmStore.getActiveCdmSource()` ret...
Patrick Plitzner
01:25 PM Revision e0812cf2 (taxeditor): ref #7674 Enhance sorting of matrix rows
- aggregated taxon description always on top
- specimen descriptions based on id
Patrick Plitzner
12:39 PM Revision 9f10abf7 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
12:36 PM Revision 25f9ee23 (cdmlib): Merge branch 'develop' into taxonDecription
Patrick Plitzner
12:21 PM Revision fa285af0 (cdm-vaadin): logging
Andreas Kohlbecker
12:20 PM Revision fe3180d3 (cdm-vaadin): fix #7641 ignoring unpersisted entities in ToOneRelatedEntityRelo...
Andreas Kohlbecker
11:45 AM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
All the UI issues have been solved.
The issue with the DerivedUnit with no FieldUnit is handled in #7704
Patrick Plitzner
11:24 AM feature request #5972: Prevent user from unwanted author and reference updates
> we might also handle this via rights&roles but probably this is not adequate. Generally we allow those users to upd... Andreas Kohlbecker
11:15 AM feature request #7708 (New): Unify handling of i18n title/representation in identifiable entities
Copied from #7707:
Also there are IdentifiableEntity someclasses which have similar but not equal data structures ...
Andreas Müller
11:13 AM Revision 269e42e0 (cdm-dataportal): ref #7686 Better way to check for empty string
Patrick Plitzner
11:13 AM feature request #7707 (New): Handle title / titleCache similar to Media in Classification and oth...
In #7705 the best way to handle i18n-title and titleCache in the UI for classes with "simple titleCache" (titleCache ... Andreas Müller
10:58 AM task #6864 (Duplicate): [DISCUSS] Title and titleCache in Media
This is mostly a duplicate for #7705 Andreas Müller
10:48 AM feature request #7706 (Closed): Warning for reused Media is missing
If Media is linked from multiple data the according warning is missing in the details view. This is critical.
===
...
Andreas Müller
10:45 AM feature request #7705: Improve handling of title/titleCache and multi-language support for Media
Katja, Patrick: do you think we can move this ticket to one of the current target versions (5.3 or 5.4)? Andreas Müller
10:30 AM feature request #7705 (New): Improve handling of title/titleCache and multi-language support for ...
We need i18n support for Media title and description if i18n support is switched on in preferences.
Also we to edi...
Andreas Müller
10:24 AM Revision b511fb13 (cdm-dataportal): ref #7686 Better way to check for empty string
Patrick Plitzner
09:46 AM feature request #7704: Dataportal specimen table should be able to show DerivedUnits without a Fi...
Patrick Plitzner wrote:
> This case can happen for type specimens that were created without a FieldUnit and just ass...
Andreas Müller
08:04 AM feature request #7704 (New): Dataportal specimen table should be able to show DerivedUnits withou...
The current implementation of the specimen table works only on FieldUnits. Each row represents a FieldUnit and if ext... Patrick Plitzner
07:57 AM bug #7703 (New): Multiple names cannot be shown in TypeDesignationDetailElement for specimens
If a SpecimenTypeDesignation has more than one name set as `typifiedName` the DetailsView shows the following:
![]...
Patrick Plitzner
07:49 AM Revision 6a660dc3 (cdm-dataportal): ref #7686 Remove citation label
Patrick Plitzner
07:20 AM Revision 0dd9be37 (cdm-dataportal): ref #7686 Fix check for empty string
Patrick Plitzner
06:53 AM Revision 76c5c9b7 (cdm-dataportal): ref #7686 Fix check for empty string
Patrick Plitzner

08/29/2018

06:50 PM bug #7702 (Resolved): corrupted hibernate session after previous error during save operation
Applied in changeset commit:cdm-vaadin|7450d44bf31c73a41b69d836d1b87f0305784ad7. Andreas Kohlbecker
06:11 PM bug #7702 (Closed): corrupted hibernate session after previous error during save operation
This is the same problem as in #7559
the bug has not 100% been fixed be the changes made last time.
After this ...
Andreas Kohlbecker
06:50 PM Revision 7450d44b (cdm-vaadin): fix #7702 always clearing session in finally clause
Andreas Kohlbecker
06:31 PM Revision 0f1cc6a3 (cdmlib): ref #7702 avoiding NPE in TargetEntityStates when pervious state is null
Andreas Kohlbecker
05:12 PM Revision 64688697 (cdmlib): ref #7686 Do not use null for keys in map (JSON error)
Patrick Plitzner
04:54 PM bug #7667 (Feedback): NoHttpResponseException for large queries in bulk editor
I could not reproduce this anymore.
I tested on production and test server.
Patrick Plitzner
04:47 PM Revision a5b11885 (cdm-dataportal): ref #7686 show info for unset type status
Patrick Plitzner
04:34 PM Revision cd175378 (cdmlib): ref #7686 Do not ignore types without type status
Patrick Plitzner
04:33 PM Revision 01371d61 (cdmlib): ref #7686 Use titleCache if no identifier can be found
Patrick Plitzner
04:28 PM bug #7528 (Closed): Allow changing the Registration status in the RegistrationWorkingsetEditor
For curators all status are available but the selection of the available status is limited to guarantee a directed an... Andreas Kohlbecker
04:09 PM Revision 4ad74423 (taxeditor): Use title cache as label when protected
Patrick Plitzner
04:08 PM Revision 2d6348e5 (cdm-dataportal): ref #7686 Add label to link to specimen page
Patrick Plitzner
03:24 PM Revision b317a252 (cdm-vaadin): fixing LIE related to RegistrationPopupEditor
Andreas Kohlbecker
03:20 PM feature request #7701 (New): Add link to typified name on specimen page of data portal
"Anmerkung: Auf der Specimen Seite fehlt noch ein Link auf den typifizierten Namen, entsprechend den associated taxa." Patrick Plitzner
03:19 PM bug #7686: Specimen title cache issues in data portal specimen table
Andreas M.:
* Gibt der verwendete Webservice grundsätzlich nur Fieldunits oder werden auch DerivedUnits zurückgege...
Patrick Plitzner
03:16 PM bug #7686: Specimen title cache issues in data portal specimen table
Walter:
"Hierzu dann gleich auch noch zwei Anmerkungen:

Den Titel mit der ID ist unschön, zumal ja diese I...
Patrick Plitzner
02:14 PM bug #7699: NPE when searching for specimen in bulk editor
Andreas Müller wrote:
> On rem_conf_am (see stacktrace) and search for "A*"
I cannot reproduce this here either
Patrick Plitzner
01:32 PM bug #7699: NPE when searching for specimen in bulk editor
On rem_conf_am (see stacktrace) and search for "A*" Andreas Müller
01:25 PM bug #7699 (Feedback): NPE when searching for specimen in bulk editor
I cannot reproduce this. On which DB did you test? Does it always happen for any search on any DB? Patrick Plitzner
11:59 AM bug #7699 (Feedback): NPE when searching for specimen in bulk editor
NPE when searching for specimen
~~~
login :
editor version : 5.3.0.201808280657
server : ()
schema version :...
Katja Luther
01:51 PM bug #7500: Can't open both related accepted taxa of reused MAN
Should I already review this ticket? Andreas Müller
01:24 PM bug #7698 (Resolved): CCE when creating new datasource
Applied in changeset commit:taxeditor|954982ef90bc8d6a36def59139fe9e96a2a7becc. Patrick Plitzner
11:06 AM bug #7698 (Closed): CCE when creating new datasource
~~~
login : admin
editor version : 5.3.0.201808280657
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
schem...
Andreas Müller
01:24 PM Revision 954982ef (taxeditor): fix #7698 Fix class cast exception
Patrick Plitzner
01:00 PM feature request #7700: use TypeDesignationSetManager for creating typedesignation string in cdmli...
see also #7695
the typedesignationSetManager already do the deduplication of specimen for one homotypical group an...
Katja Luther
01:00 PM feature request #7700 (Resolved): use TypeDesignationSetManager for creating typedesignation stri...
Katja Luther
12:23 PM bug #7371: Deleting Polytomous Key throws NPE
please review Katja Luther
12:23 PM bug #7371 (Resolved): Deleting Polytomous Key throws NPE
Applied in changeset commit:taxeditor|de55078200c8f2e52f4784ed9aa6b1c6611ddb86. Katja Luther
12:23 PM Revision de550782 (taxeditor): fix #7371: fix NPE when deleting polytomous key
Katja Luther
12:16 PM bug #4429 (Rejected): List of available software sites gets overwritten when updating product
Not relevant anymore as update sites are hardcoded now. Andreas Müller
09:21 AM feature request #7695 (In Progress): web service providing compact TypeDesignation representation...
I wonder if we should really require a single name uuid as obligatory input parameter. The semantics of the service s... Andreas Müller

08/28/2018

04:05 PM Revision 27bddb2a (cdm-dataportal): php doc
Andreas Kohlbecker
04:00 PM bug #7692 (Worksforme): Empty "Specimens" section
This is not a bug in the webservice. The Specimen in question actually has no FieldUnit.
So this is primarily a data...
Andreas Kohlbecker
03:48 PM bug #7692: Empty "Specimens" section
The actual problem is that the webservice `portal/taxon/fb987766-3ea5-45e0-a606-ca9b9d1253cf/associatedFieldUnits.jso... Andreas Kohlbecker
03:08 PM bug #7692 (In Progress): Empty "Specimens" section
The web service returns one specimen for this taxon:
http://api.cybertaxonomy.org/caryo_nepenthaceae/occurrence/by...
Andreas Kohlbecker
03:38 PM Revision 035aa43d (cdm-dataportal): Merge branch 'develop' into hotfix/5.2.1
Andreas Kohlbecker
03:33 PM Revision 02f3768c (cdm-dataportal): ref #7692 avoiding php warning related to specimen table
Andreas Kohlbecker
03:01 PM bug #7691 (Resolved): Empty "Bibliography" section
Applied in changeset commit:cdm-dataportal|850092a77002da04822cb23ce097e58b05ecbd5d. Andreas Kohlbecker
03:01 PM Revision 850092a7 (cdm-dataportal): fix #7691 supressing bibliography when content is empty
Andreas Kohlbecker
02:31 PM bug #7500 (Resolved): Can't open both related accepted taxa of reused MAN
Applied in changeset commit:taxeditor|c5cfeefde69828735b910d91075f0d7bdb42464f. Katja Luther
01:43 PM bug #7500 (In Progress): Can't open both related accepted taxa of reused MAN
Katja Luther
02:31 PM Revision c5cfeefd (taxeditor): fix #7500: for misapplied names related to different taxa use choo...
Katja Luther
01:52 PM bug #7693 (Duplicate): keys section can not be hidden in tabless taxon page
this is a duplicate of #7294 Andreas Kohlbecker
07:39 AM bug #7693 (Duplicate): keys section can not be hidden in tabless taxon page
When the tabless taxon page mode is enabled, the "Section/Tab visibility" setting for the "keys" section has no effect. Andreas Kohlbecker
01:48 PM bug #7294 (Resolved): keys block can not be disabled in tabless taxon page
Applied in changeset commit:cdm-dataportal|48a6d7e8e45c3140d00fc2b8ee5b66f472aa5a5a. Andreas Kohlbecker
01:47 PM Revision 8a1b451e (cdm-dataportal): php doc
Andreas Kohlbecker
01:47 PM Revision 48a6d7e8 (cdm-dataportal): fix #7294 fixing broken tab/page-section disabling
Andreas Kohlbecker
01:39 PM task #6778: remove big objects from taxeditor git repository
Andreas Kohlbecker wrote:
> Eine weitere Möglichkeit ist der Umzug auf Gitlab.com.
>
> "To celebrate today's good...
Patrick Plitzner
10:57 AM task #6778: remove big objects from taxeditor git repository
Eine weitere Möglichkeit ist der Umzug auf Gitlab.com.
"To celebrate today's good news we've permanently raised ou...
Andreas Kohlbecker
01:38 PM Revision 9da648a0 (taxeditor): ref #7680: fix NPE for excluded notes
Katja Luther
01:33 PM Revision e04a2b79 (taxeditor): ref #7680: unplaced, excluded and publish checkboxes should be ava...
Katja Luther
01:30 PM feature request #7680 (In Progress): Refactor TaxonNodeDetailElement
the problems of not visible unplaced, excluded and publish checkboxes are fixed now. But to implement the NewTaxonNod... Katja Luther
12:43 PM bug #6289 (Closed): “Back to images” link as “Back to taxon page” when in table-less mode
fixed and tested Andreas Kohlbecker
12:41 PM bug #6289 (Resolved): “Back to images” link as “Back to taxon page” when in table-less mode
Applied in changeset commit:cdm-dataportal|78bac306ef38b006fb5e622ce73f3ae699e6a10b. Andreas Kohlbecker
12:41 PM Revision 78bac306 (cdm-dataportal): fix #6289 'back to taxon page' link label for media page
Andreas Kohlbecker
12:41 PM Revision ff5d6ecb (cdm-dataportal): typo
Andreas Kohlbecker
12:28 PM bug #7563 (Closed): requests with %2F in URL are rejected by apache
Andreas Kohlbecker
12:28 PM bug #7563 (Resolved): requests with %2F in URL are rejected by apache
Andreas Kohlbecker
12:25 PM Revision 5044311f (taxeditor): Set the bgColor of summary row to gray
Patrick Plitzner
11:52 AM bug #7576 (Closed): Set Publish Flag for Subtree Dialog - Problems with Progressmonitor
Ok, the most severe problems seem to be fixed so far. Andreas Kohlbecker
11:47 AM task #7596 (Closed): PhycoBank Portal - Formatting
Andreas Kohlbecker
11:35 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
Problems with current implementation of the new webservice:
1. `relations.representation_L10n` and `relations.repr...
Andreas Kohlbecker
11:09 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
The TypeDesignationSetManager needs to be modified, so that it can be used for multiple usecases. By default it valid... Andreas Kohlbecker
10:28 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
changing the controller endpoint to `/name/{uuid}/homotypicGroupTypeDesignationsDTO`, issue description updated. Andreas Kohlbecker
09:10 AM feature request #7695 (In Progress): web service providing compact TypeDesignation representation...

The webservice path:
* ~~`typedesignations/byTaxon/{taxon_uuid}`, `typedesignations/byHomotypicalGroup/{group_...
Andreas Kohlbecker
10:51 AM bug #7679 (Closed): NPE when creating root child in classification
OK, seems to work now. Andreas Müller
08:52 AM bug #7679: NPE when creating root child in classification
Andreas Müller wrote:
> Looks like commit 46f913aa went only into the hotfix branch but needs to be committed to bot...
Patrick Plitzner
10:45 AM Revision 0f793f18 (cdmlib): ref #7695 initial implementation of the /name/{uuid}/homotypicGroupTy...
Andreas Kohlbecker
10:43 AM Revision e8daeef6 (taxeditor): minor
Andreas Müller
10:42 AM Revision df5966b8 (cdmlib): initial implementation of the /name/{uuid}/homotypicGroupTypeDesignat...
Andreas Kohlbecker
10:26 AM bug #7677 (Resolved): Nomenclatural Status is always set to nom illeg in details view
Katja Luther
10:25 AM Revision 5e188bc9 (cdmlib): ref #7694: adapt typedesignation output for cdmlight export
Katja Luther
09:20 AM feature request #7696 (New): use compact type representations in the synonymy as provided by the ...

* Source references should be shown as footnotes to the types
Note: see `compose_registation_dto($registration...
Andreas Kohlbecker
09:10 AM feature request #7694 (Duplicate): cdmlight export output of types needs to be adapted

Relativ einfach sollte das (zumindest bei Nepenthes) für die nicht-atomisierten Typenzitate sein; da steht das Ori...
Katja Luther
08:51 AM Revision ff687253 (taxeditor): ref #7679 Evaluate DB prefs for publish flag
Patrick Plitzner

08/27/2018

10:25 PM Revision 65b0eef9 (taxeditor): ref #7677: set default type for nomenclatural status while creatin...
Katja Luther
10:24 PM bug #7677: Nomenclatural Status is always set to nom illeg in details view
yes you are right, it is better to create a new status with default type nom. illeg. then we do not have to set the s... Katja Luther
08:30 PM bug #7677 (Feedback): Nomenclatural Status is always set to nom illeg in details view
The implementation is still not fully correct. If a NomenclaturalStatus WITHOUT type exists the type will be set to n... Andreas Müller
07:38 PM bug #7681 (Closed): Update date field when editing parse field in TimePeriodElement
Looks fine now.
Only, I would prefer to add some color to the parse field and/or the parse label. But this is not...
Andreas Müller
07:33 PM bug #7679 (Feedback): NPE when creating root child in classification
Looks like commit 46f913aa went only into the hotfix branch but needs to be committed to both branches.
Can't test...
Andreas Müller
03:25 PM bug #7679 (Resolved): NPE when creating root child in classification
Patrick Plitzner
03:00 PM bug #7679 (Feedback): NPE when creating root child in classification
The setting of the publish flag does not yet work in this case. It should either be "true" (but currently is "false")... Andreas Müller
01:49 PM bug #7679 (Resolved): NPE when creating root child in classification
Andreas Müller wrote:
> Can't we put this to resolved already?
As we already moved it to 5.2 because of the hotfi...
Patrick Plitzner
01:30 PM bug #7679: NPE when creating root child in classification
Can't we put this to resolved already? Andreas Müller
06:08 PM bug #7689: Mutliple representation exception when creating taxon nodes
We should try to fix this soon if it is reproducable Andreas Müller
03:46 PM bug #7689 (New): Mutliple representation exception when creating taxon nodes
Steps to reproduce:
1. Create a root taxon via right-click on classification
2. Directly create a second one on t...
Patrick Plitzner
05:25 PM bug #7555 (Closed): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsa...
Andreas Müller wrote:
> The issue described in the description (as link) seems to be solved.
>
> The 2 later link...
Andreas Kohlbecker
05:11 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
Andreas Müller wrote:
> Maybe it is related that for Nepenthes alata no specimen appear: http://caryophyllales.org/n...
Andreas Kohlbecker
05:08 PM bug #7692 (Worksforme): Empty "Specimens" section
In some cases the tabless taxon page shows an empty "Specimens" section.
Example: http://caryophyllales.org/nepent...
Andreas Kohlbecker
05:07 PM bug #7691 (Closed): Empty "Bibliography" section
In some cases the tabless taxon page shows an empty "Bibliography" section.
Example: http://caryophyllales.org/nep...
Andreas Kohlbecker
04:50 PM Revision e8d37b23 (taxeditor): ref #7674 Change bgColor of aggregated taxon description
Patrick Plitzner
04:11 PM bug #7690 (In Progress): adapt available typedesignation editors to name rank
The RegistrationWorkingsetEditor offers a selection dialog for NameTypeDesignationEditor and SpecimenTypeDesignationE... Andreas Kohlbecker
03:25 PM Revision 46f913aa (taxeditor): ref #7679 Evaluate DB prefs for publish flag
Patrick Plitzner
02:17 PM feature request #7688 (New): Agent (person/team/instituion) page
To make agents (persons, teams, institutions) linkable and give an overview on all data available on an agent we need... Andreas Müller
02:03 PM bug #7687 (Closed): NPE in TypeDesignationSetManager
Fix looks ok! Andreas Kohlbecker
01:57 PM bug #7687: NPE in TypeDesignationSetManager
Hallo,

habe ich vorläufig gefixt: commit:73e4daa. Wird heute Nacht eingespielt.

Andreas K., schaust du nochma...
Andreas Kohlbecker
01:55 PM bug #7687 (Closed): NPE in TypeDesignationSetManager


Arbeit mit Vaadin http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/8295ec6c...
Andreas Kohlbecker
01:49 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allo...
Andreas Kohlbecker wrote:
>...
> Maybe the http://docs.geotools.org/ provide a suitable parser? Also a possibility,...
Andreas Müller
01:36 PM report #7089: Rights and Roles Workshop 2017-11
I think it is better to close this ticket and open a new "Open issues for Rights and Roles" ticket. Andreas Müller
01:31 PM report #7089 (In Progress): Rights and Roles Workshop 2017-11
It is linked from [[WorkshopRightsAndRoles2017-11]], therefore I think we could close it without losing anything, BUT... Andreas Kohlbecker
12:33 PM report #7089: Rights and Roles Workshop 2017-11
Do we want to keep this ticket open? Andreas Müller
01:31 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
![](picture727-1.png)
Walter:
* Der Name nach Holotype of wird doppelt ausgegeben.
* Vor dem Link zum Herbarb...
Patrick Plitzner
01:28 PM feature request #7685 (New): Add Selenium tests for specimen table in data portal
* add test data to 160.45.63.201/cdm_integration_reference
* create new dump which needs to be stored in edit-integr...
Patrick Plitzner
01:22 PM bug #7528 (In Progress): Allow changing the Registration status in the RegistrationWorkingsetEditor
This issue should not be closed as duplicate as it contains the references to the code changes.
I will rather clo...
Andreas Kohlbecker
01:20 PM feature request #7618 (Duplicate): PhycoBank Curator rights
closing this issue as duplicate of #7528 the discussion on the status `rejected` has moved to #7684 Andreas Kohlbecker
01:01 PM bug #7676 (Feedback): Suchfunktionalität in Registration UI Dateneingabe
In der Ticketbeschreibung sind verschiedene Probleme beschrieben.
1. Suche nach der Registrierung (100267) für den...
Andreas Kohlbecker
12:37 PM bug #6247 (Rejected): Check if concept relationships are correctly implemented in Gefäßpflanzenim...
As the redlists are not using the platform anymore we do not need the import anymore. Andreas Müller
12:09 PM bug #7683 (In Progress): external links Audit table should allow uuid to be null
Andreas Müller
12:09 PM bug #7683: external links Audit table should allow uuid to be null
This is generally the case already when databases are created via hibernate CREATE (see e.g. edit-test.cdm_test_eurom... Andreas Müller
11:32 AM bug #7683 (Resolved): external links Audit table should allow uuid to be null
when deleting an external link an com.mysql.jdbc.exceptions.jdbc4.MySQLIntegrityConstraintViolationException: Column ... Katja Luther
11:56 AM Revision 036b1573 (taxeditor): move the parse field at the top of datedetails and add tooltip
Katja Luther
11:49 AM bug #7682 (In Progress): Point.precision must not be 0 by default
Already removed default value in class, still need update script to remove all 0 values from existing data Andreas Müller
09:48 AM bug #7682 (Resolved): Point.precision must not be 0 by default
It seems as if there is a problem with the embedded type Point. Whenever long and lat are set the radius is always se... Andreas Kohlbecker
11:46 AM Revision e6a65453 (cdmlib): ref# 7682 remove default value for Point.precision
Andreas Müller
11:32 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
the fields are available now, but the AUD table definition needs to be updated, the uuid should be allowed to be null... Katja Luther
10:46 AM Revision 9ad45667 (taxeditor): ref #7415: add external link section to original source part
Katja Luther
10:37 AM Revision 414b03e6 (taxeditor): ref #7415: add external link section to original source part
Katja Luther
09:36 AM Revision 8be7bd71 (taxeditor): ref #7674 Remove unused class
Patrick Plitzner
09:35 AM Revision 1cc08dc4 (taxeditor): ref #7674 Disable cell editor for aggregated taxon descriptions
Patrick Plitzner
09:12 AM Revision d4aefb3a (taxeditor): ref #7674 Do not aggregate taxon descriptions
Patrick Plitzner
09:09 AM Revision 61473b5a (taxeditor): ref #7674 Show taxon descriptions as rows in matrix
Patrick Plitzner

08/24/2018

12:39 PM Revision a7818829 (taxeditor): fix #7681 Update date field when editing parse field
Patrick Plitzner
12:39 PM bug #7681 (Resolved): Update date field when editing parse field in TimePeriodElement
Applied in changeset commit:taxeditor|9be67535c6cfd81916477c02af59ea94dcf4487b. Patrick Plitzner
12:38 PM bug #7681 (Closed): Update date field when editing parse field in TimePeriodElement
The date fields are only updated when a correct date could be parsed.
This could be misleading if i.e. you clear t...
Patrick Plitzner
12:38 PM Revision 9be67535 (taxeditor): fix #7681 Update date field when editing parse field
Patrick Plitzner
11:52 AM Revision 17acac26 (taxeditor): ref #7679 Change order of UI elements
Patrick Plitzner
11:35 AM Revision 22daad3e (taxeditor): ref #7679 Change order of UI elements
Patrick Plitzner
11:32 AM Revision 9e01ec16 (taxeditor): ref #7679 Temporary hotfix for NPE in taxon node wizard
Patrick Plitzner
11:26 AM Revision 9d74201a (taxeditor): ref #7679 Temporary hotfix for NPE in taxon node wizard
Patrick Plitzner
11:24 AM Revision 39b63571 (taxeditor): Updated version in pom / project files to taxeditor version : 5.2....
jenkins
11:13 AM Revision eabf0e1d (cdmlib): ref #7075 fix bugs in MediaExcelImport
Andreas Müller
10:28 AM bug #7679: NPE when creating root child in classification
I created a new ticket for the redesign -> #7680 Patrick Plitzner
10:26 AM bug #7679: NPE when creating root child in classification
While investigating this issue I realized that the *NewTaxonNodeWizard* does not work like all the other "new" wizard... Patrick Plitzner
08:36 AM bug #7679: NPE when creating root child in classification
When entering data in "Detail" an exception is thrown with every key stroke
~~~
login : admin
editor version : 5...
Patrick Plitzner
10:27 AM feature request #7680 (Closed): Refactor TaxonNodeDetailElement
Copied from #7679:
While investigating this issue I realized that the *NewTaxonNodeWizard* does not work like all ...
Patrick Plitzner

08/23/2018

05:28 PM bug #7679 (In Progress): NPE when creating root child in classification
Andreas Müller
05:28 PM bug #7679 (Closed): NPE when creating root child in classification
When calling "new" on classification, the dialog does not show the "publish" checkbox for some reason. Also the unpla... Andreas Müller
05:11 PM Revision 737221ab (cdmlib): ref #7674 Fix lazy init exception
Patrick Plitzner
04:09 PM bug #7677: Nomenclatural Status is always set to nom illeg in details view
~~~ sql
select distinct name.id nameId, name.fullTitleCache fullTitle, defNow.titleCache currentStatus, a.date, ns.r...
Andreas Müller
11:39 AM bug #7677: Nomenclatural Status is always set to nom illeg in details view
This is the statement to get all nomenclatural status changes for update and create and which are changed to nom. ill... Katja Luther
10:10 AM bug #7677 (Resolved): Nomenclatural Status is always set to nom illeg in details view
Katja Luther
10:09 AM bug #7677 (Closed): Nomenclatural Status is always set to nom illeg in details view
Hallo,
es scheint so, dass die default-Einstellung für Nomenclatural Status als "nom. illeg." einen gefährlichen N...
Katja Luther
11:26 AM feature request #7678 (New): Show exception message if editor update fails
For example IOException when the hard drive is full
~~~
java.io.IOException: Es steht nicht genug Speicherplatz a...
Patrick Plitzner
11:16 AM Revision 3da4a5e6 (taxeditor): ref #7674 Fix saving of aggregated description
Patrick Plitzner
11:15 AM Revision fcd9dc61 (taxeditor): ref #7674 Fix class cas exceptions
Patrick Plitzner
11:06 AM Revision 7c245320 (taxeditor): Fix possible widget disposed exception
Patrick Plitzner
10:59 AM Revision 6867fa49 (cdmlib): ref #7674 Make aggregate service readOnly=false
Patrick Plitzner
10:48 AM Revision e4f8b74d (taxeditor): fix bug in nomenclatural status details view
Katja Luther
09:48 AM Revision be0fbb67 (cdmlib): ref #7674 Change method name
Patrick Plitzner
09:37 AM Revision d1975e7b (taxeditor): Merge branch 'hotfix/5.2.1'
jenkins
09:12 AM Revision 451f02f6 (taxeditor): fix bug in nomenclatural status element
Katja Luther
08:52 AM Revision cf7bb147 (taxeditor): Updated version in pom / project files to taxeditor version : 5.2....
jenkins

08/22/2018

05:50 PM Revision e15dfd39 (taxeditor): ref #7674 Adapt to cdmlib change(Add aggregated description to dat...
Patrick Plitzner
05:49 PM Revision 32d09233 (cdmlib): ref #7674 Add aggregated description to data set
Patrick Plitzner
04:31 PM bug #7672: use taxonRelationship formatter for label in referencing objects view
Maybe we should first consider moving formatting to server side as it is faster and as we may also make formatting de... Andreas Müller
02:31 PM bug #7672 (New): use taxonRelationship formatter for label in referencing objects view
Die Formatierer der Konzeptrelationen im RefObjects View scheinen die Relationen noch falsch herum zu beschreiben. Au... Katja Luther
03:41 PM bug #7676: Suchfunktionalität in Registration UI Dateneingabe
Das Phänomen ist schlecht reproduzierbar.
Bevor ich das Ticket geschrieben habe, hatte ich mich als admin aus und wi...
Wolf-Henning Kusber
03:24 PM bug #7676 (Closed): Suchfunktionalität in Registration UI Dateneingabe
Referenz lt. Datenbankausgabe:
Moestrup, Ø. & Calado, A.J., Dinophyceae.Süßwasserflora von Mitteleuropa, 6: [I]-IX, ...
Wolf-Henning Kusber
03:22 PM Revision 4bd6b5fc (cdmlib): ref #7674 Refactor RowWrapper
- add sub classes fort specimen and taxon row wrapper
- add service methods
Patrick Plitzner
02:52 PM Revision 6a776dc5 (cdmlib): ref #7674 Refactor RowWrapper
- code cleanup Patrick Plitzner
02:50 PM feature request #7675 (New): Make columns with default values togglable
Columns that have default values defined in a taxon description should have a function to toggle their visibility Patrick Plitzner
02:47 PM feature request #7674 (Closed): Show taxon descriptions in character matrix editor
There are two types of taxon descriptions:
1. description from literature
1. description for default values
Th...
Patrick Plitzner
02:32 PM task #7673 (New): review ABCD import
please review the ABCD import for alga terra new Katja Luther
02:22 PM bug #3535: Automatically update descriptive view if content changed
please review
Katja Luther
02:22 PM bug #3535 (Resolved): Automatically update descriptive view if content changed
Applied in changeset commit:taxeditor|c799a32e590620a2719f8f4edfa30604d5a23306. Katja Luther
02:21 PM feature request #7669: Greece import Willing images
~~~ sql
SELECT *
FROM [Herbar].[dbo].[trRdf_complete]
WHERE Collector like '%Willing%' AND CatalogNumber = 'B 10 0...
Andreas Müller
02:20 PM Revision c799a32e (taxeditor): fix #3535: update name editor after moving descriptions from one t...
Katja Luther
02:16 PM Revision b1cce780 (taxeditor): Merge branch 'develop' into taxonDescription
Patrick Plitzner
02:15 PM Revision 3158af23 (taxeditor): Fix possible NPE
Patrick Plitzner
01:13 PM bug #7484 (Resolved): Protected titleCache handling not correct in Reference detail view
Applied in changeset commit:taxeditor|0656435dc061bddf14ebdbdad6b3868f6e0f2eb3. Katja Luther
01:11 PM Revision 0656435d (taxeditor): fix #7484: fix correct colouring of fields for protected titlecach...
Katja Luther
12:35 PM bug #7665: ConcurrentModificationException when closing Editor
Patrick Plitzner wrote:
> Applied in changeset commit:taxeditor|c7b20ed3c866508182a3d5d1b44b57fc1244b6f8.
Not sur...
Andreas Müller
12:25 PM bug #7665 (Resolved): ConcurrentModificationException when closing Editor
Applied in changeset commit:taxeditor|c7b20ed3c866508182a3d5d1b44b57fc1244b6f8. Patrick Plitzner
12:24 PM bug #7665: ConcurrentModificationException when closing Editor
I could never reproduce this problem, so for reviewing we could just wait test for a while and see if it happens again. Patrick Plitzner
11:30 AM bug #7665 (In Progress): ConcurrentModificationException when closing Editor
use iterator.remove() Andreas Müller
12:25 PM Revision c7b20ed3 (taxeditor): fix #7665 Use iterator to avoid ConcurrentModificationException
Patrick Plitzner
12:24 PM Revision 2bc033c4 (taxeditor): Remove unused method
Patrick Plitzner
12:21 PM bug #7352 (Closed): review propertyPaths in editor
Andreas Müller
12:07 PM feature request #6565 (Closed): [MASTER] Eclipse 4 Migration
Andreas Müller
12:05 PM feature request #6932 (Closed): Migrate bulk editor
Close this ticket as bulk editor has new developments like NAT tables and parallel loading anyways. Andreas Müller
12:01 PM bug #4465 (Worksforme): Handle Drag and Drop for Synonyms
this issue is fixed, follow up ticket with remaining problems is #7671 Katja Luther
11:59 AM bug #7064 (Closed): NameEditor remaining issues
Andreas Müller
11:56 AM bug #7064: NameEditor remaining issues
Created new tickets for open issues Andreas Müller
11:57 AM bug #7671 (New): Drag & Drop for synonyms has refresh problems
when drag & drop synonym from an existing homotypic group or into an existing homotypic group the refresh of the name... Katja Luther
11:49 AM feature request #7670 (New): [DISCUSS] Do we need right click "save" menu
... or is icon + Str/S enough.
Ask users.
It was like this in Name Editor before e4. Either we should have it e...
Andreas Müller
11:49 AM Revision f8019c2d (taxeditor): ref #7657 Consider taxon node filter when loading data
Patrick Plitzner
11:48 AM Revision aa5ef8d0 (cdmlib): ref #7657 code refactoring
Patrick Plitzner
11:34 AM feature request #7015 (New): Migrate recent menu item
The recent menu should preferably show only recent items from the currently connected database Andreas Müller
09:36 AM bug #7576 (Resolved): Set Publish Flag for Subtree Dialog - Problems with Progressmonitor
The problem of lost connection between server and progress monitor dialog is fixed, the percentage display is fixed t... Katja Luther
08:42 AM feature request #7657 (Rejected): Use HQL query for loading character matrix
issue should be handled in #7589 Patrick Plitzner
08:41 AM feature request #7589: Performance, UX and stability patches for CharacterMatrix
commit:cdmlib|d9c066f5584fd689621509488a82c6649abb84d4 Patrick Plitzner
08:40 AM Revision d9c066f5 (cdmlib): ref #7657 Increase loading speed for matrix
Patrick Plitzner

08/21/2018

05:59 PM Revision ee6addb8 (cdmlib): ref #7657 Load description for matrix via HQL (still broken)
Patrick Plitzner
04:06 PM Revision 73e4daae (cdmlib): fix NPE in TypeDesignationSetManager.stringify(TypeDesignationSetMana...
Andreas Müller
03:41 PM bug #6850 (Feedback): NPE when clearing label of "kind of" term in TermEditor
@Andreas: I could not reproduce this behavior. Maybe this was fixed a while ago. Can you please test and close this t... Patrick Plitzner
03:29 PM bug #6742 (Feedback): IAE when using "Link with taxon selection" in Specimen-Editor
@Andreas: I could not reproduce this behavior. Maybe this was fixed a while ago. Can you please test and close this t... Patrick Plitzner
03:24 PM feature request #7669 (In Progress): Greece import Willing images
Import images and specimen metadata for images from E.Willing
Original idea:
* import via ABCD
* webservices...
Andreas Müller
03:14 PM feature request #6475 (Resolved): Make specimen tree editor collapsable and expandable
Patrick Plitzner
03:13 PM Revision 5d8c225b (taxeditor): ref #6475 Make specimen tree editor collapsable and expandable
Patrick Plitzner
01:50 PM feature request #5021 (Rejected): TreeNodeDropAdapterAssistant should use RemotingMoveTaxonNodeHa...
I think this is obsolete because the functionality is now in the service method which is used by both classes. Katja Luther
12:46 PM bug #4573 (Resolved): Handle duplicate username, group or grantedAuthority correctly
please review Katja Luther
12:33 PM bug #4573: Handle duplicate username, group or grantedAuthority correctly
now for users and groups there is a check for identical names and a message that the user/group already exists, pops up. Katja Luther
12:44 PM Revision bb5d8aed (taxeditor): ref #4573: handle duplicate grantedAuthority in editor
Katja Luther
12:25 PM Revision 9122a3ce (taxeditor): ref #4573: handle duplicate user and group name in editor
Katja Luther
11:25 AM bug #7638: problem with media data missing meta data

The media file above does not exist, clicking on the link results in:
Sorry, no connection ...
Sorry, no conn...
Katja Luther
09:46 AM bug #7145: NPE when trying to move a synonym into another homotypic group
this exception appeared again for Sabine:
Hallo,
bei Sabulina afghanica kann ich das Synonym nicht von hetero- ...
Katja Luther
09:44 AM bug #7668 (Closed): NPE when changing author
mail of Sabine:
Hallo,
beim Versuch bei der Art Arenaria brachypetala den Autor zu ändern (Auswahl eines andere...
Katja Luther
08:31 AM Revision 4133992a (cdmlib-apps): adapt AlgaTerraTypeImport to new specimen facade signature for k...
Andreas Müller
08:30 AM Revision b557cf20 (cdmlib-apps): rename IAPT import test package (same name as import package its...
Andreas Müller
08:29 AM Revision 5bfe953d (cdmlib-apps): ref #7664 adapt app-import to typified return types
Andreas Müller
08:05 AM bug #7606: kompact display of CDM Point data
Maybe we can leave it as an expandable element which is by default not expanded.
This allows to also show the deci...
Andreas Müller

08/20/2018

06:06 PM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misa...
WGB: Der Buchlink verweist auf den Protolog von N. blancoi Blume – der hat ja aber gerade nichts mit dieser Namensanw... Andreas Müller
11:59 AM feature request #7666 (In Progress): Remaining issues for "Formatter and DTO for taxon relationsh...
copied from #6682
for requirements see #6682
* correct symbols for relationships in databases
* EN_DASH...
Andreas Müller
05:40 PM feature request #6682: Formatter and DTO for taxon relationships (e.g. misapplied names)
AM: … und noch etwas: bei der „sensu“ Referenz ist ja vermutlich die Jahreszahl bewusst weggelassen um es an die gäng... Andreas Müller
05:30 PM feature request #6682: Formatter and DTO for taxon relationships (e.g. misapplied names)
Sensu references and relation references should be formatted similarly:
WGB: Wenn die exakte Referenz über die Bib...
Andreas Müller
12:00 PM feature request #6682 (Closed): Formatter and DTO for taxon relationships (e.g. misapplied names)
close this ticket as released in 5.2, open issues moved to #7666 Andreas Müller
03:38 PM Revision 18983f12 (cdm-server): Add Releases link
Patrick Plitzner
02:20 PM bug #7528 (Duplicate): Allow changing the Registration status in the RegistrationWorkingsetEditor
Wolf-Henning Kusber
02:18 PM feature request #7572 (Closed): SpecimenTypeDesignationEditor: Collection combobox shows collecti...
Review: institutions as well as codes can be searched. Seem to work. Wolf-Henning Kusber
01:57 PM feature request #7611 (Closed): media types with media uris are clickable
Es funktioniert (ist allerdings nicht besonders auffällig).
Beispiel in der Ausgabe http://test.e-taxonomy.eu/datapo...
Wolf-Henning Kusber
01:43 PM feature request #7569 (Closed): SpecimenTypeDesignationEditor: Typedesignations should be ordered
Main usecases checked:
Holotype isotypes
Holotype paratypes
Type Epitype, Type lectotype
Order as requested, ti...
Wolf-Henning Kusber
01:39 PM bug #7667: NoHttpResponseException for large queries in bulk editor
we should handle this with high priority as it may influence server performance Andreas Müller
01:32 PM bug #7667 (Feedback): NoHttpResponseException for large queries in bulk editor
Copied from #6321:
AM: "when testing a couple of times I got an EagerLoadingException caused by an NoHttpResponseE...
Patrick Plitzner
01:35 PM bug #7557 (Closed): TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a su...
Wolf-Henning Kusber
01:33 PM bug #7629 (Closed): creating a typification only registration should not be possible if the names...
Tested and works. Wolf-Henning Kusber
01:32 PM feature request #6321 (Closed): Implement parallel loading + progress bar for loading objects int...
Andreas Müller wrote:
> Generally I wonder how to continue here. As mentioned I still get HTTPNoResponse issues on "...
Patrick Plitzner
01:28 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
Maybe it is related that for Nepenthes alata no specimen appear: http://caryophyllales.org/nepenthaceae/cdm_dataporta... Andreas Müller
12:38 PM bug #7555 (Feedback): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lap...
The issue described in the description (as link) seems to be solved.
The 2 later links do return "Required UUID pa...
Andreas Müller
01:27 PM feature request #7594: RegistrationWorkingsetEditor click on new serveral times
Issue not resolved. May be a problem of the slow test server. Wolf-Henning Kusber
01:19 PM feature request #7643: cdmlight export: for bibliographic short citation use the freetext of the ...
As mentioned in #note-2 this implementation is critical. I left a note in #7644 to maybe revert once #7644 is impleme... Andreas Müller
01:03 PM feature request #7643 (Closed): cdmlight export: for bibliographic short citation use the freetex...
Katja Luther
01:13 PM Revision c88ae0d7 (cdmlib): fix NPE in CdmLightExport
Katja Luther
01:11 PM bug #7566 (Closed): TeamOrPersonField: some Persons can not be selected
Wolf-Henning Kusber
12:48 PM Revision 5c5d1f1f (cdmlib): ref #7666 adapt test for new doubtful handling in formatter
Andreas Müller
12:34 PM bug #7647 (Closed): accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in d...
The example was Nepenthes hispida and it is displayed correctly as accepted name now. Katja Luther
12:29 PM bug #7647 (Feedback): accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in...
Katja, can you check with Walters example again in production. Unfortunately it is not mentioned in the ticket. If it... Andreas Müller
11:52 AM Revision 2469bc9b (cdmlib): cleanup
Andreas Müller
11:52 AM Revision 9c8dc025 (cdmlib): ref #6682 split doubtful in rel doubtful and taxon doubtful + use ful...
Andreas Müller
10:34 AM feature request #7071 (New): Reenable restore functionality
Patrick Plitzner
10:11 AM bug #7665 (Resolved): ConcurrentModificationException when closing Editor
When closing editor a ConcurrentModificationException occurs:
~~~ text
login : w.berendsohn
editor version : 5.2...
Katja Luther
10:10 AM Revision 04e5e29a (taxeditor): minor refactoring
Patrick Plitzner
09:18 AM Revision adacf42f (taxeditor): Fix NPE for editing newly added feature nodes
Patrick Plitzner

08/17/2018

10:01 PM bug #7578: preseve null values in all mesurements during serialization of webservice responses
Andreas Müller wrote:
> error radius still returns 0 in http://test.e-taxonomy.eu/cdmserver/cichorieae/occurrence/8e...
Andreas Kohlbecker
03:14 PM bug #7578: preseve null values in all mesurements during serialization of webservice responses
error radius still returns 0 in http://test.e-taxonomy.eu/cdmserver/cichorieae/occurrence/8eaf2ade-d478-4af6-b3df-bad... Andreas Müller
02:09 PM bug #7578 (Closed): preseve null values in all mesurements during serialization of webservice res...
works now! Andreas Kohlbecker
12:50 PM bug #7578 (In Progress): preseve null values in all mesurements during serialization of webservic...
this seems to be not working as expected:
http://test.e-taxonomy.eu/cdmserver/cichorieae/occurrence/8eaf2ade-d478-...
Andreas Kohlbecker
09:36 PM bug #7179: Phycobank: set protectedTitleCaches = 1 where Person contains no data
correct! Andreas Kohlbecker
04:24 PM bug #7179: Phycobank: set protectedTitleCaches = 1 where Person contains no data
I guess this is only data related and therefore target version can be removed. Correct? Andreas Müller
05:19 PM Revision 54ada1c3 (cdm-vaadin): ref #7664 adapt return type for many methods with defined typific...
Andreas Müller
04:57 PM Revision 62cc2893 (taxeditor): cleanup
Andreas Müller
04:41 PM feature request #7071: Reenable restore functionality
?? Andreas Müller
04:23 PM feature request #7281: Implement bromelian import
I guess this is only data related and therefore target version can be removed? Otherwise please add commit and revert... Andreas Müller
04:14 PM Revision 2c34bd93 (taxeditor): Merge branch 'release/5.2.0' into develop
jenkins
04:14 PM Revision 11b59612 (taxeditor): Merge branch 'release/5.2.0'
jenkins
04:09 PM feature request #6682 (Resolved): Formatter and DTO for taxon relationships (e.g. misapplied names)
Andreas Müller
04:08 PM Revision 83415cdc (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
04:08 PM Revision 69c43289 (cdm-server): Merge branch 'release/5.2.0' into develop
jenkins
04:07 PM Revision a230cdfe (cdm-server): updating poms for branch'release/5.2.0' with non-snapshot versions
jenkins
04:06 PM Revision c546187c (cdm-webapp): Merge branch 'release/5.2.0' into develop
jenkins
04:06 PM Revision 4201e860 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
04:06 PM task #6986 (Rejected): 4 animalia lists available for RL
Rejected as lists are not needed anymore. Andreas Müller
04:06 PM Revision 2c37dba5 (cdm-webapp): updating poms for branch'release/5.2.0' with non-snapshot versions
jenkins
04:06 PM Revision b3e90dcb (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.2.0
jenkins
04:06 PM Revision bd2c0c62 (cdm-dataportal): Merge branch 'release/5.2.0' into develop
jenkins
04:06 PM Revision c8deffb3 (cdm-dataportal): updating poms for branch'release/5.2.0' with non-snapshot ver...
jenkins
04:05 PM Revision b05cbcac (cdm-dataportal): release-preparation: production level css
jenkins
04:05 PM Revision 31c10aae (cdm-vaadin): Merge branch 'release/5.2.0' into develop
jenkins
04:05 PM Revision 61fd59ad (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
04:02 PM Revision 9b6635b8 (cdm-vaadin): updating poms for branch'release/5.2.0' with non-snapshot versions
jenkins
04:02 PM Revision c2e6c883 (cdm-vaadin): jenkins bumping cdmlib.version to 5.2.0
jenkins
03:51 PM task #7596 (Resolved): PhycoBank Portal - Formatting
Andreas Kohlbecker
03:33 PM task #7527 (Closed): CdmEntityDaoBase.*ByParam() public and also available in the service layer
Generally this looks ok. Only the return types should be specified explicitly. I created a new ticket as this is a ge... Andreas Müller
03:31 PM Revision 98ce4a92 (cdmlib): ref #7664 adapt return type for many methods with defined typification
Andreas Müller
03:23 PM Revision 1c5a8870 (cdmlib): Merge branch 'master' into develop
jenkins
03:23 PM Revision b826b86c (cdmlib): Updating develop poms back to pre merge state
jenkins
03:23 PM Revision 4d987e05 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:23 PM Revision 2a5e027c (cdmlib): Merge branch 'release/5.2.0'
jenkins
03:23 PM feature request #7664 (New): Use typified return types where possible
1. Many method of service layer and persistence use T as return type even if a more specific class is defined by para... Andreas Müller
03:07 PM Revision 3da6827b (cdmlib): updating poms for branch'release/5.2.0' with non-snapshot versions
jenkins
02:57 PM Revision 18b3dd0d (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.2.0-SN...
jenkins
02:57 PM Revision 4c3d9f75 (cdm-webapp): updating poms for 5.3.0-SNAPSHOT development
jenkins
02:57 PM Revision f4dcd669 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.3.0-SN...
jenkins
02:55 PM Revision f9062d6c (cdm-vaadin): jenkins bumping cdmlib.version to 5.2.0-SNAPSHOT
jenkins
02:55 PM Revision 1fd3f2b5 (cdm-vaadin): updating poms for 5.3.0-SNAPSHOT development
jenkins
02:55 PM Revision 771e5e60 (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0-SNAPSHOT
jenkins
02:54 PM Revision 2ff641d8 (cdm-vaadin): avoiding symlinks to circumvent bug in jgitflow
Andreas Kohlbecker
02:41 PM Revision 22e26d8a (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0-SNAPSHOT
jenkins
02:40 PM Revision 6a6f6267 (cdm-vaadin): ignoring env.properties
Andreas Kohlbecker
02:35 PM Revision 4d01989b (taxeditor): ref #7362 Show info when searching with <4 letters
Patrick Plitzner
02:20 PM Revision 4f2039f3 (taxeditor): Updated version in pom / project files to taxeditor version : 5.3....
jenkins
02:20 PM Revision 272802a9 (taxeditor): Updated version in pom / project files to taxeditor version : 5.2....
jenkins
02:20 PM Revision 8a69db44 (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0-SNAPSHOT
jenkins
02:20 PM Revision b1f1bc44 (cdm-server): updating poms for 5.3.0-SNAPSHOT development
jenkins
02:20 PM Revision 735ffe43 (cdm-dataportal): updating poms for 5.3.0-SNAPSHOT development
jenkins
02:17 PM Revision 07f30a67 (cdmlib): updating poms for 5.3.0-SNAPSHOT development
jenkins
01:26 PM Revision 200979f6 (cdmlib): ref #7578 adding missing json config entry for the generic api
Andreas Kohlbecker
01:03 PM bug #7663 (New): drupal installations report Undefined index: distribution_name in drupal_install...
This is a known drupal issue https://www.drupal.org/project/drupal/issues/1971068
See also:
https://api.drup...
Andreas Kohlbecker
12:30 PM bug #7361 (Closed): Consistent UI concept for create, new, add, remove, delete, edit buttons
remaining improvements copied to #7662 Andreas Kohlbecker
12:28 PM feature request #7662 (New): Better icons for create, new, add row, remove row

Alternative icons for create, new, add row, remove row:
* use add row and remove icons like: ![](picture79-1.png...
Andreas Kohlbecker
12:21 PM Revision e8423490 (taxeditor): ref #7362 Show synonyms for term details
Patrick Plitzner
12:20 PM bug #7583 (Closed): NPE on logout in registration list view
it's fixed Andreas Kohlbecker
12:17 PM feature request #7590 (Closed): findByTitleWithRestrictions allows combining Restrictions by OR
this feature obviously works as expected on the test-server since it is being used in cdm-vaadin and it is covered by... Andreas Kohlbecker
12:16 PM task #7550 (Closed): Move UserHelper from cdm-vaadin into cdmlib
no further problems Andreas Kohlbecker
12:15 PM bug #7525 (Closed): IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm...
all criteria methods restored commit:024d9b21 and no further problems did popup during the past two months, so we can... Andreas Kohlbecker
12:12 PM bug #7586 (Closed): com.vaadin.data.Property$ReadOnlyException on opening TypeSpecimenWorkingsetE...
did not occur again on the test-server since over 20days, so this is for sure solved Andreas Kohlbecker
12:11 PM feature request #7571 (Closed): Collection editor has field to select and edit the institution
Andreas Kohlbecker
12:10 PM task #7562 (Closed): Specimen table "Associated with" taxon is irritating and needs to be removed...
Checked and ok Andreas Kohlbecker
09:40 AM task #7562: Specimen table "Associated with" taxon is irritating and needs to be removed, replaced
For reviewing check http://test.e-taxonomy.eu/dataportal/preview/campanulaceae/cdm_dataportal/taxon/cdcacbda-11c0-4c... Andreas Kohlbecker
09:40 AM task #7562: Specimen table "Associated with" taxon is irritating and needs to be removed, replaced
Hallo Norbert,
die Specimenseiten sind von dieser Änderung nicht betroffen: http://test.e-taxonomy.eu/dataportal/p...
Andreas Kohlbecker
08:48 AM task #7562: Specimen table "Associated with" taxon is irritating and needs to be removed, replaced
Hallo Andreas,

ich komm erst heute dazu, zu antworten.

Ich kann mich ehrlich gesagt nicht mehr daran erinnern...
Andreas Kohlbecker
12:06 PM Revision a77d81cc (cdmlib): removing unused duplicate property PreservedSpecimenDTOs
Andreas Kohlbecker
11:53 AM Revision d68a30b0 (cdm-dataportal): using FielUnitDTO->derivates instead of ->preservedSpecimenDT...
Andreas Kohlbecker
11:51 AM Revision c902cfd4 (cdm-dataportal): merge develop into feature branch
Katja Luther
11:38 AM Revision fe56d402 (cdmlib): fieldUnitDTO code cleaning
Katja Luther
11:33 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Generally I wonder how to continue here. As mentioned I still get HTTPNoResponse issues on "test" when running large ... Andreas Müller
11:25 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Patrick Plitzner wrote:
> Comment #6321#note-43: This is fixed
OK, this looks quite good. I think we can only i...
Andreas Müller
11:18 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Patrick Plitzner wrote:
> Comment #6321#note-40: I just added a delay of 500ms to wait for the previous job to finis...
Andreas Müller
11:15 AM feature request #6321 (Feedback): Implement parallel loading + progress bar for loading objects i...
I still get exceptions related to NoHttpResponseException on test server. E.g. when running a first request for "*" o... Andreas Müller
11:14 AM Revision 416bc78f (cdm-dataportal): use mediaDTO
Katja Luther
11:08 AM feature request #7661 (New): Improve saving strategy for bulk editor
Currently all records are reloaded. This creates problems especially with large lists.
We need a save strategy whi...
Andreas Müller
11:00 AM feature request #7643: cdmlight export: for bibliographic short citation use the freetext of the ...
yes this is fixed. Katja Luther
10:53 AM feature request #7643: cdmlight export: for bibliographic short citation use the freetext of the ...
Andreas Müller wrote:
> This will throw an NPE if datePublished does not exist!!
Is this fixed??
Andreas Müller
10:53 AM Revision f5ac2db4 (cdmlib): removing merge conflict artifact from eclipse launcher
Andreas Kohlbecker
10:52 AM feature request #7518 (Closed): remaining issues for usage of NatTable for bulkeditor
All issues are either fixed or moved to new ticket so we can close this one. Andreas Müller
10:51 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
> **better symbols for target/candidates of deduplication**: this could either be solved b...
Andreas Müller
10:39 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
>
> **However, the percentage does not yet depend on real content length**: I tried auto a...
Andreas Müller
10:21 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
> **possibility to copy from a cell content**: On linux the context menu does not exist at a...
Andreas Müller
10:19 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
> **colors look like in the 90th**: I used a little less neon colors but this is very subj...
Andreas Müller
10:10 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
> **once we have >3 columns we will need horizontal scrolling anyway**: horizontal scrolli...
Andreas Müller
10:06 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
> **size of the rows should not be 50/50, but depending on the content length (percentage ...
Andreas Müller
10:50 AM Revision fdd2fa78 (cdmlib): cleaning merge problem info in comment
Andreas Kohlbecker
10:46 AM feature request #7660 (Closed): Indicate the row state in a NAT table via symbols
This is needed for e.g. indicating that a row is a candidate for deduplication. For further discussion see #7518.
...
Andreas Müller
10:44 AM Revision a7e45124 (cdmlib): code cleaning
Katja Luther
10:43 AM Revision 806bd3b0 (taxeditor): ref #7362 Use pre-selected vocabulary when dragging terms
Patrick Plitzner
10:37 AM feature request #7659 (New): Implement algorithm to optimize initial column size in NAT tables
If a NAT table has multiple columns the correct initial column size becomes important to avoid too much empty space a... Andreas Müller
10:34 AM Revision 6b91c396 (cdmlib): fix getPreservedSpecimen in fieldUnitDTO
Katja Luther
10:26 AM Revision aeb34234 (taxeditor): ref #7362 Add term vocabular combo
Patrick Plitzner
10:00 AM bug #7559 (Closed): possibly corrupted hiberante session after previous error on saving editor
Done with commit:cdm-vaadin|51886e05
Closing ticket.
Andreas Kohlbecker
09:51 AM bug #7559: possibly corrupted hiberante session after previous error on saving editor
These problems did not occur since 30 days despite intensive usage of the test system, therefore we can be pretty sur... Andreas Kohlbecker
09:58 AM Revision 51886e05 (cdm-vaadin): ref #7559 removing commented code which also includes old convers...
Andreas Kohlbecker
09:44 AM bug #6563 (Closed): Display altitude, distance to Ground and watersurface correct handling of fr...
Works for the examples given in this issue. Andreas Kohlbecker
09:27 AM bug #7531 (Closed): PermissionDeniedException on flushing registration with modified status even ...
Very beautiful code ;-), I think we can close this ticket. Andreas Müller
07:31 AM Revision e93e2265 (cdmlib): Fix LazyInitializationException
Patrick Plitzner
07:31 AM Revision 34d7fab8 (cdmlib): Add source of type aggregation to description
Patrick Plitzner

08/16/2018

07:09 PM Revision a9c1e5d6 (cdmlib): ref #6682 types for both directions
Andreas Müller
06:47 PM Revision ef5174f6 (cdmlib): ref #6682 try to fix failing query in TaxonDao
Andreas Müller
06:15 PM Revision 5576f79c (cdmlib): ref #6682 try to fix failing query in TaxonDao
Andreas Müller
06:09 PM Revision 1e1d5695 (cdmlib): ref #6682 revert relType DTO
Andreas Müller
06:03 PM Revision 1fc33b39 (cdmlib): ref #6682 add types and deduplicateMisapplications parameter to web s...
Andreas Müller
05:53 PM Revision a089c5d4 (cdmlib): ref #6682 add types and deduplicateMisapplications parameter to web s...
Andreas Müller
05:12 PM Revision 78614c1a (cdmlib): ref #6682 add typeUuid and try to fix missing type issue
Andreas Müller
04:33 PM bug #7638 (Feedback): problem with media data missing meta data
Size is empty now, but heigth and width is still 0. Is this wanted or did you forget to handle them similarly? Andreas Müller
04:29 PM bug #7647: accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in details view
A first check looks fine, but I would like to check again with Walters example after release before finally closing t... Andreas Müller
04:15 PM Revision 4e6e568a (cdmlib): ref #6682 fix misapplication deduplication issues
Andreas Müller
03:43 PM Revision 2fa5cd44 (taxeditor): Allow only exact values xOR aggregated values in cell editor
Patrick Plitzner
03:42 PM Revision 5e627e56 (taxeditor): Fix setting of feature type
Patrick Plitzner
03:21 PM Revision 1038e9fe (taxeditor): Fix NPE
Patrick Plitzner
03:16 PM Revision 576743e2 (cdmlib): ref #6682 include doubtful
Andreas Müller
02:35 PM feature request #7658 (Closed): use new taxon relationship DTO webservice in portal
for details see #6682
Example taxa:
* Chichorieae: Pilosella acutifolia coll.
* Cihochorieae: Hieracium dermop...
Andreas Kohlbecker
02:33 PM bug #7243 (Duplicate): sometimes the context menu in name editor does not work anymore
Patrick Plitzner
01:55 PM Revision 8b98d482 (cdmlib): ref #6682 use TaggedTextBuilder
Andreas Müller
12:59 PM Revision 8a17aa3e (cdmlib): ref #6682 further fixes for taxon relationship formatting - remove se...
Andreas Müller
12:53 PM Revision 3c998621 (taxeditor): Make specimen selection dialog horizontally scrollable
Patrick Plitzner
12:17 PM Revision d6c56cdc (cdmlib): ref #6682 further fixes for taxon relationship formatting - fix refer...
Andreas Müller
12:10 PM Revision fcbac3e6 (taxeditor): Show possible exception in dialog
Patrick Plitzner
12:07 PM feature request #7657 (Rejected): Use HQL query for loading character matrix
Patrick Plitzner
11:43 AM Revision a81acd75 (cdmlib): revert commit ff21181c
Katja Luther
11:39 AM Revision 6f78f667 (cdmlib): deproxy of entities in TaggedTextBuilder
Andreas Kohlbecker
10:14 AM bug #7641: Reference editor: Error when incerting several new authors into a new author team
![](picture645-1.png)

![](picture58-1.png)
![](picture395-1.png)
Wolf-Henning Kusber
08:52 AM Revision b3fb4578 (taxeditor): adapt editor to change getFieldUnitForGatheringEvent to findFieldU...
Katja Luther
08:48 AM Revision 90ec321a (cdmlib): ref #6682 further fixes for taxon relationship formatting - relsec an...
Andreas Müller
08:18 AM Revision 81502ddd (cdmlib): ref #6682 further fixes for taxon relationship service - better separ...
Andreas Müller

08/15/2018

12:49 AM Revision 82eb3374 (cdmlib): ref #6682 further fixes for taxon relationship service
Andreas Müller
12:05 AM Revision d7909683 (cdmlib): ref #6682 further fixes for taxon relationship service
Andreas Müller
10:14 PM Revision 977a388a (cdmlib): ref #6682 fix directions for taxonRelationship service
Andreas Müller
10:07 PM Revision 973082b3 (cdmlib): ref #6682 further fixes for taxonRelationship service
Andreas Müller
09:13 PM Revision 1fab5922 (cdmlib): ref #6682 some changes to test taxon relationship service
Andreas Müller
08:16 PM Revision c6a7335e (cdmlib): ref #6682 adapt inverse MAN symbol in test
Andreas Müller
08:12 PM bug #7656 (Duplicate): Adapt inverse symbol for MisappliedName relationship type
this is required for #6682
still need update script here
Andreas Müller
08:10 PM Revision d50a2175 (cdmlib): ref #6682 adapt taxon rel type symbols in test in for MAN inverse type
Andreas Müller
07:30 PM Revision 33852ad0 (cdmlib): ref #6682 first implementation of taxon relationship formatter and we...
Andreas Müller
05:49 PM Revision a186543e (taxeditor): ref #7518 Pre-load and select previously selected element
Patrick Plitzner
05:47 PM Revision ed983c96 (cdmlib): ref #7492 handled unpublished in NameCatalogueController.doGetTaxonIn...
Andreas Müller
05:06 PM Revision 6959d272 (taxeditor): Fix possible NPE
Patrick Plitzner
04:56 PM Revision 938551ac (cdmlib): cleanup
Andreas Müller
04:56 PM Revision 6d921b88 (cdmlib): fix non compiling code in CommonServiceImpl (works on other installat...
Andreas Müller
04:56 PM Revision 93cd99ee (cdmlib): fix row count issue for CsvImportBase
Andreas Müller
04:56 PM Revision 3994e588 (cdmlib): cleanup
Andreas Müller
03:38 PM feature request #7518 (Resolved): remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner
03:31 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor
~~**possibility to copy from a cell content**: On linux the context menu does not exist at all but CTRL+C works. I th... Patrick Plitzner
03:37 PM Revision 596ef595 (taxeditor): ref #7518 Fix colums sizes -> show horizontal scrollbars
Patrick Plitzner
03:20 PM Revision e229bf65 (taxeditor): adapt taxeditor to changes in DerivedUnitFacade
Katja Luther
03:20 PM Revision a160d195 (taxeditor): do not allow to add NameDescriptions in bulkeditor
Katja Luther
03:18 PM Revision ec35f482 (taxeditor): ref #7518 Soften colors for deduplication
Patrick Plitzner
03:02 PM Revision 16a514f4 (taxeditor): ref #7518 Reduce size of index column
Patrick Plitzner
02:40 PM Revision 737c3638 (cdmlib): adapt occurrence search to changes in derivedUnitFacade
Katja Luther
02:37 PM Revision 5a65460f (cdmlib): adapt cdm light test
Katja Luther
02:22 PM Revision c17ca5af (cdmlib): fix NPE in cdm light export
Katja Luther
02:04 PM Revision 745fac28 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
01:51 PM Revision 544dc46c (taxeditor): Fix exception label for URI text elements
Patrick Plitzner
01:44 PM Revision 55f7ad0e (cdmlib): minor
Katja Luther
01:38 PM Revision e2ba0554 (cdmlib): minor
Katja Luther
01:18 PM Revision 2201d866 (cdmlib): adapt abcd import to changes in derivedUnitFacade
Katja Luther
01:17 PM Revision 7d2bfaed (cdmlib): fix test for getKindOfUnit
Katja Luther
01:00 PM Revision 4047c748 (cdmlib): adapt test for cdm light to last changes
Katja Luther
12:52 PM Revision c6716d5c (cdmlib): Merge branch 'feature/specimenPortal' into develop
Katja Luther
12:52 PM Revision 10b00df8 (cdmlib): derivedUnitFacade should not give back the kindOfUnit for the fieldUn...
Katja Luther
12:51 PM Revision 6492ba96 (cdmlib): adapt sec ref title with datePublished freeText
Katja Luther
12:23 PM feature request #6321 (Resolved): Implement parallel loading + progress bar for loading objects i...
Patrick Plitzner
09:54 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Comment #6321#note-40: I just added a delay of 500ms to wait for the previous job to finish. Waiting explicitily is v... Patrick Plitzner
12:16 PM bug #7641: Reference editor: Error when incerting several new authors into a new author team
All new authors, except the last one are not saved = they can not be selected. Wolf-Henning Kusber
12:06 PM bug #7641: Reference editor: Error when incerting several new authors into a new author team
http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/1c70fa46-c7a5-43e7-922a-379b200... Wolf-Henning Kusber
11:44 AM bug #7641: Reference editor: Error when incerting several new authors into a new author team
2018-08-15
Documentation http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/8be1a...
Wolf-Henning Kusber
11:33 AM Revision 4315c73d (cdmlib): adapt authorship string ion cdmlight
Katja Luther
11:10 AM Revision cef17ca3 (cdmlib): Increase version number of site skin project
Patrick Plitzner
10:05 AM Revision c31ff29d (cdmlib): kindOfUnit for all derivates not only for field units
Katja Luther
10:03 AM Revision 23daf51d (taxeditor): Fix releases link
Patrick Plitzner
10:02 AM Revision e288ba50 (cdmlib): Fix releases link
Patrick Plitzner
09:13 AM feature request #7653: [DISCUSS] Delete NameFacts
WGB:
richtig wichtig erscheint mir vor allem die Sache mit den Typen. Aber für alle Fälle gilt, dass man das vorlä...
Andreas Müller

08/14/2018

09:22 PM Revision a433aeeb (taxeditor): Allow either categorical xor quantitative data for characters
Patrick Plitzner
09:22 PM Revision 88ef5f8b (taxeditor): ref #6321 Wait for previous search to finish
Patrick Plitzner
09:22 PM Revision 66e51de3 (taxeditor): ref #6321 Load asynchronously loaded entities into main session
Patrick Plitzner
09:22 PM Revision 970a5512 (taxeditor): Change label of feature tree widget for descriptive date set editor
Patrick Plitzner
06:54 PM feature request #7655 (Duplicate): References Editor: book section offers title field
References Editor: A book section does not provide a title field, yet.
External users might miss this.
Workaround...
Wolf-Henning Kusber
06:51 PM feature request #7654 (New): New registration page existing publications combobox does 'begins wi...
The search on bibliographic authors is a full text search.
Example "Lange-Bert" (see screen shot) is searching for t...
Wolf-Henning Kusber
04:41 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Also after import of new higher classifications we need to attache subgeneric taxa to their according taxa in bulk.
...
Andreas Müller
04:38 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Andreas Kohlbecker wrote:
> When creating a species a new Taxon needs to be created for this species and the new tax...
Andreas Müller
04:26 PM feature request #7653: [DISCUSS] Delete NameFacts
WGB:
ich sehe da eine Reihe von Anwendungen für Namens-bezogene Fakten:
* Etymologie – ist ganz allgemein wie e...
Andreas Müller
10:25 AM feature request #7653: [DISCUSS] Delete NameFacts
AM:
upps, das ist mir vollständig neu, dass für Namen über den Bulkeditor auch (Name-)facts editiert werden können...
Andreas Müller
10:23 AM feature request #7653 (In Progress): [DISCUSS] Delete NameFacts
NameFacts are currently very rarely used except for protologues. Protologues will be handled with nomenclatural sourc... Andreas Müller
04:00 PM Revision 012d4a65 (taxeditor): Revert "ref #6321 Wait for canceled search to finish before starti...
This reverts commit 36ee2736a960471161a354379845f770027286c4. Patrick Plitzner
03:07 PM Revision 203a0b07 (cdm-server): Update CI link
Patrick Plitzner
03:04 PM Revision 696940b9 (taxeditor): Fix broken releases link
Patrick Plitzner
03:02 PM Revision b1f5279e (taxeditor): Update developers information
Patrick Plitzner
02:56 PM Revision f8b62135 (cdmlib): Remove broken link
Patrick Plitzner
10:21 AM Revision 135547e5 (cdmlib): Merge branch 'develop' into feature/specimenPortal
Katja Luther
10:21 AM Revision 545f8115 (cdmlib): smaller changes on specimenDTOs
Katja Luther
10:17 AM Revision 276f39f6 (cdm-dataportal): add the treeview as third variant for the specimen page
Katja Luther
09:49 AM feature request #7281 (Closed): Implement bromelian import
Katja Luther
09:46 AM bug #7638 (Resolved): problem with media data missing meta data
Katja Luther
09:42 AM bug #7614 (Closed): IndexOutOfBoundsException after deleting in bulkeditor
works fine now and the code seems to be correct. Katja Luther
09:12 AM feature request #7652 (New): add possibility to delete only the taxon node and keep the taxon in ...
Katja Luther

08/13/2018

12:52 AM Revision 8648170e (cdmlib): ref #7651 #7622 using nameService instead of CdmRepository to avoid b...
Andreas Kohlbecker
11:38 PM Revision 0faf24b5 (cdmlib): ref #7651 #7622 relaxing requirement for an available registration mi...
Andreas Kohlbecker
11:02 PM task #7651 (New): RegistrationManager implemented
The commit:6ed17427 which was made for #7622 contains business logic which was placed in the RegistrationService for ... Andreas Kohlbecker
10:57 PM task #7650 (New): RegistrationFactory implemented
The commit:6ed17427 which was made for #7622 contains factory methods (at least one) which were placed in the Registr... Andreas Kohlbecker
10:53 PM Revision 148bdb5b (cdmlib): ref #7622 addTypeDesignation() to receive registration uuids instead ...
Andreas Kohlbecker
10:51 PM Revision 6f1b1416 (cdm-vaadin): ref #7622 simplyfying code be replacing targetRegistration for ty...
Andreas Kohlbecker
07:32 PM Revision dd3f7f9d (cdm-vaadin): ref #7622 persisting new registrations only when typeDesignations...
Andreas Kohlbecker
07:30 PM Revision 6ed17427 (cdmlib): ref #7622 preliminarily moving all registration management methods fo...
Andreas Kohlbecker
07:21 PM bug #7622: RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leave...
Updating the subject to better reflect the cause Andreas Kohlbecker
05:21 PM feature request #6682: Formatter and DTO for taxon relationships (e.g. misapplied names)
This should rather be a formatter for concept relations and a new DTO service in remote. Andreas Müller
04:34 PM bug #7649 (Closed): Term editor loads/saves extremely slow
Walter:
"Der Term Editor braucht extrem lange, um aufzugehen – macht nichts, aber könnte ja sein, dass da etwas n...
Patrick Plitzner
04:31 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > when testing a couple of times I got an EagerLoadingException c...
Andreas Müller
04:20 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Andreas Müller wrote:
> when testing a couple of times I got an EagerLoadingException caused by an NoHttpResponseExc...
Patrick Plitzner
03:26 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Andreas Müller wrote:
> When running a search and stopping it by running a new search the results of the first searc...
Patrick Plitzner
04:30 PM bug #7614 (Resolved): IndexOutOfBoundsException after deleting in bulkeditor
Patrick Plitzner
04:29 PM bug #7614: IndexOutOfBoundsException after deleting in bulkeditor
There are cases when -1 is returned as the current row index. This is now caught before getting the element at the in... Patrick Plitzner
04:05 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
Also an issue for Nepenthes ampullaria
http://caryophyllales.org/nepenthaceae/cdm_api/proxy/http%253A%252F%252Fap...
Andreas Müller
01:33 PM bug #7555 (Resolved): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lap...
please review Andreas Kohlbecker
01:32 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
fixed in commit:0d70754 Andreas Kohlbecker
01:29 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
also reported by walter
http://caryophyllales.org/nepenthaceae/cdm_api/proxy/http%253A%252F%252Fapi.cybertaxono...
Andreas Kohlbecker
03:26 PM Revision 36ee2736 (taxeditor): ref #6321 Wait for canceled search to finish before starting new s...
Patrick Plitzner
03:20 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names...
When creating a species a new Taxon needs to be created for this species and the new taxon needs to be related to the... Andreas Kohlbecker
03:00 PM Revision a8d014b2 (cdm-server): Fix link to installation site
Patrick Plitzner
02:28 PM feature request #7506 (Duplicate): Allow direct editing bulk editor
Patrick Plitzner
02:27 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Andreas Müller wrote:
> The following comment was missing when the ticket was copied from #7439: "Additionally offer...
Patrick Plitzner
01:17 PM feature request #4383: references in bibliography need de-duplication
Same or similar problem reported by Walter:
bei http://caryophyllales.org/nepenthaceae/cdm_dataportal/taxon/463255...
Andreas Kohlbecker
01:09 PM task #3249 (Duplicate): [DISCUSS] Free text search for specimen details
this seems like a duplicate of #3223
The requirement details given in this issue are very campanula secific and co...
Andreas Kohlbecker
01:04 PM bug #7645 (Closed): specimen admin preferences are not saved
works now Andreas Müller
09:53 AM bug #7645: specimen admin preferences are not saved
Applied in changeset commit:taxeditor|3935afdf45ef9ddc44850fab61cf53ba79125643. Katja Luther
09:45 AM bug #7645 (Resolved): specimen admin preferences are not saved
Andreas Müller
09:13 AM bug #7645 (Closed): specimen admin preferences are not saved
The specimen admin preferences are not in the database after clicking apply or OK. Katja Luther
01:03 PM bug #7647 (Resolved): accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in...
Katja Luther
01:02 PM bug #7647 (Closed): accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in d...
Katja Luther
12:47 PM bug #6289: “Back to images” link as “Back to taxon page” when in table-less mode
Fixing this should be easy and quickly. Andreas Kohlbecker
12:41 PM Revision 7c4fcd5c (taxeditor): fix missing label for feature in description element details view
Katja Luther
12:31 PM Revision a316f71d (taxeditor): accepted taxon which is also used as MAN should be displayed corre...
Katja Luther
11:58 AM feature request #6677: Add "hort." flag to Botanical names
AM:
ok, das heißt, hort. könnte eigentlich an allen 4 Stellen stehen (Kombinations- und Ex-Author, sowie auch als ...
Andreas Müller
11:51 AM feature request #6677: Add "hort." flag to Botanical names
WGB:
im Stearn (4ed, 355) wird die Abkürzung „hort.“ als „hortorum, of gardens; hortulanorum, of gardeners“ defini...
Andreas Müller
10:43 AM feature request #6677: Add "hort." flag to Botanical names
AM:
Hallo Walter,
ich glaube im Zuge des Nepenthes Imports bin ich irgendwann mal auf die Abkürzung „hort.“ ges...
Andreas Müller
10:38 AM feature request #7646 (New): Implement parser and formatter for "hort."
as soon as #6677 is implemented Andreas Müller
09:51 AM feature request #7419 (Closed): Provide example NormalImplicit import file for phycobank higher t...
I think we can close this ticket. Andreas Müller
09:30 AM feature request #7419: Provide example NormalImplicit import file for phycobank higher taxon grap...
Why did you pass this issue to me? From reading the comments I got the impression that this issue is completed. I thi... Andreas Kohlbecker
09:18 AM Revision 240ff660 (taxeditor): fix #7645: get the correct values from db for specimen admin prefe...
Katja Luther
09:17 AM Revision 3935afdf (taxeditor): fix #7645: get the correct values from db for specimen admin prefe...
Katja Luther

08/10/2018

09:41 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Also got an NPE when deleting (and saving the delete) of a Reference. Maybe this is also related to parallel loading?... Andreas Müller
09:21 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Reloading after save and setting selection after save if selection is one of the later records in a huge dataset is s... Andreas Müller
09:17 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
In name bulk editor changing e.g. specific epithet does NOT change the labels for "Name" and "Scientific name" and al... Andreas Müller
09:07 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
when testing a couple of times I got an EagerLoadingException caused by an NoHttpResponseException. May the test serv... Andreas Müller
08:33 PM feature request #6321 (Feedback): Implement parallel loading + progress bar for loading objects i...
When running a search and stopping it by running a new search the results of the first search are still (partly) avai... Andreas Müller
08:18 PM feature request #7429 (Closed): Improve parsing and formatting for VerbatimTimePeriod
Andreas Müller
08:11 PM feature request #7506 (Feedback): Allow direct editing bulk editor
To me this seems to be a duplicate for #7503. Can you please double check and if you agree close ticket as duplicate ... Andreas Müller
08:01 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor
The following comment was missing when the ticket was copied from #7439: "Additionally offering tooltips saying that ... Andreas Müller
07:56 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor
By the way, once we have >3 columns we will need horizontal scrolling anyway. So maybe this can already be implemente... Andreas Müller
07:49 PM feature request #7518 (Feedback): remaining issues for usage of NatTable for bulkeditor
* possibility to copy from a cell content
* this works now except for the fact that in editing mode the right cli...
Andreas Müller
07:27 PM bug #7544 (Closed): Dragging a misapplication onto itself throws an exception in name editor
Disabling d&d seems to work. Advanced features copied to #7609 so we can close this ticket. Andreas Müller
07:15 PM bug #7603 (Closed): Changing a user group does not work as expected
As far as I understand the ticket this is fully fixed. Andreas Müller
02:27 PM task #7420: Import for higher taxon graph for phycobank
Andreas Müller wrote:
> What should be done with existing IAPT data. Should they be adapted to the new data model?
...
Andreas Müller
02:23 PM task #7420: Import for higher taxon graph for phycobank
What should be done with existing IAPT data. Should they be adapted to the new data model? Andreas Müller
02:07 PM task #7420 (In Progress): Import for higher taxon graph for phycobank
First version of import is ready and tested with Frey and WoRMS data running into empty local database.
Next step:...
Andreas Müller
02:05 PM Revision 40f4f84c (cdmlib-apps): minor
Andreas Müller
02:05 PM Revision cc9428e1 (cdmlib-apps): ref #7420 first version of phycobank higher classification import
Andreas Müller
02:03 PM feature request #7419 (Resolved): Provide example NormalImplicit import file for phycobank higher...
Wolf-Henning Kusber wrote:
> prefered: use a single excel sheet per classification
great, makes it easier
Andreas Müller
12:31 PM Revision d3f77ada (cdm-dataportal): minor
Katja Luther
10:12 AM Revision 7965ef92 (cdm-dataportal): add item list to table resolves the problem of rendering the ...
Katja Luther

08/09/2018

01:09 PM feature request #7419: Provide example NormalImplicit import file for phycobank higher taxon grap...
prefered: use a single excel sheet per classification Wolf-Henning Kusber
01:02 PM feature request #7419 (Feedback): Provide example NormalImplicit import file for phycobank higher...
There seems to be an open issue: As we decided to create a classification for each reference and create a new taxon p... Andreas Müller
11:10 AM feature request #7419 (Resolved): Provide example NormalImplicit import file for phycobank higher...
As we have decided on the format and an example file exists as attachement to #7420 I think we can close this ticket. Andreas Müller
11:07 AM feature request #7643 (Feedback): cdmlight export: for bibliographic short citation use the freet...
Andreas Müller
11:07 AM feature request #7643: cdmlight export: for bibliographic short citation use the freetext of the ...
This will throw an NPE if datePublished does not exist!!
Also it is a bit dangerous as freetext in some cases may ...
Andreas Müller
10:20 AM feature request #7643 (Resolved): cdmlight export: for bibliographic short citation use the freet...
Katja Luther
10:19 AM feature request #7643 (Closed): cdmlight export: for bibliographic short citation use the freetex...
mail of WB:
noch ein Problemchen mit dem Output:
Nepenthes Datenbank – Da habe ich die folgende Referenz:
sieh...
Katja Luther
11:03 AM feature request #7644 (Closed): Add "continued" flag to (Verbatim)Timeperiod
... to indicate that a reference (usually a database) is continously edited and has no end date (yet).
E.g. Berend...
Andreas Müller
10:44 AM task #7420: Import for higher taxon graph for phycobank
Please save future versions of the excel file in the current .xslx format, .xls is outdated. Andreas Müller
10:19 AM Revision ad53bf18 (cdmlib): ref #7643: use freetext for bibliographic short citation
Katja Luther

08/08/2018

01:22 AM feature request #7640: Update ISO country names where necessary
This is not related to vaadin but a general cdm issue.
There are a couple of issues related to ISO 3166, many of t...
Andreas Müller
02:59 PM feature request #7640 (New): Update ISO country names where necessary
Some of the currently used long labels are outdated. E.g. "Poland, Peoples Republic of" is now "Poland, Republic of".... Wolf-Henning Kusber
05:24 PM feature request #7642 (Rejected): PhycoBank Anzeige und Zugreifbarkeit von Basionymen in Vaadin (...
100233
Für die Eingabe einer Umkomination musste ich die Literatur für das Basionym anlegen, um das Basionym einzuge...
Wolf-Henning Kusber
03:47 PM feature request #7549 (Closed): Show tooltip for data aggregation in character matrix
Patrick Plitzner
03:39 PM feature request #7637 (In Progress): Handle intext references in CDM light
Andreas Müller
02:57 PM feature request #7637: Handle intext references in CDM light
the filter is implemented and is the default, with the configurator it is possible to configure, that needs to be imp... Katja Luther
02:28 PM feature request #7637 (In Progress): Handle intext references in CDM light
During cdm light export we may want to handle intext references correctly.
As a first step we simply should remove...
Andreas Müller
03:32 PM bug #7639: SpecimenTypeDesignationEditor: Altitude not saved and displayed properly
Only the verbatim field functions, see 100123 Wolf-Henning Kusber
02:52 PM bug #7639 (Closed): SpecimenTypeDesignationEditor: Altitude not saved and displayed properly
Registration: 100118 ff.
Altitude: Input 1618
Save-> Display in Vaadin =1
Altitude: Input 1618, than klick int...
Wolf-Henning Kusber
03:30 PM bug #7641 (Closed): Reference editor: Error when incerting several new authors into a new author ...
Collection team:
A collection team was built with new members as
Owsianny, P.M., Marciniak G. & Trawiński, K...
Wolf-Henning Kusber
02:54 PM bug #7638: problem with media data missing meta data
now the size is not set to 0 if an exception appears because of missing metadata. Katja Luther
02:41 PM bug #7638: problem with media data missing meta data
the original exception is:
~~~
java.io.IOException: Could not read block (block start: 504, block length: 4245350...
Katja Luther
02:39 PM bug #7638 (Resolved): problem with media data missing meta data
media imported via biocase sometimes do not show size and metadata and or exception "file not found"
AM:
Bei de...
Katja Luther
02:51 PM Revision 633a72e4 (cdmlib): do not throw an exception if metadata could not be loaded
Katja Luther
02:51 PM Revision 2d006ce7 (cdmlib): filter intext references in cdmlight export
Katja Luther
02:49 PM Revision c80855f5 (taxeditor): do not set size etc to 0 if loading meta data fails
Katja Luther
01:43 PM Revision 2d49766c (taxeditor): ref #7597 Use LongRunningTaskService for taxon aggregation
Patrick Plitzner
01:42 PM Revision 0f14b608 (cdmlib): ref #7597 Use LongRunningTaskService for taxon aggregation
Patrick Plitzner
12:58 PM feature request #6486: Implement handling of IntextReferences in dataportal
I just see that we do have types for cdm:reference and cdm:source. Probably the later one is usually better as it rep... Andreas Müller
09:41 AM Revision b5fcefe6 (taxeditor): catch possible widget is exposed exception
Patrick Plitzner
09:41 AM Revision 3a45849e (taxeditor): ref #7549 Add fallback tooltip
Patrick Plitzner
09:03 AM task #7636 (Closed): remove obsolete code which dissociates removed TypeDesignations from Registr...
`SpecimenTypeDesignationWorkingsetEditorPresenter.saveBean()` contains code which is no longer needed since #7077 is ... Andreas Kohlbecker
 

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