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feature request #3990

[DISCUSS] How to implement citation suggestion to each taxon

Added by Andreas Kohlbecker almost 6 years ago. Updated 7 months ago.

Status:
Resolved
Priority:
Highest
Category:
cdmadapter
Target version:
Start date:
01/24/2014
Due date:
% Done:

90%

Estimated time:
0.50 h
Severity:
critical

Description

... and implement data part.

In the original EuroPlusMed portal on each taxon page a citation string labeled Source is offered as a suggestion of how to cite this taxon on top of the page:

http://ww2.bgbm.org/EuroPlusMed/PTaxonDetail.asp?NameCache=Calendula%20arvensis&PTRefFk=7000000

this is also needed for the CDM based Portal.

The reference on which this suggestion is based is defined for a family or genus and then accounts for all subordinate taxa.

  • Can we store these references in the taxon nodes references for this?

  • How to propagte this information to the lower taxa? Will be always walk from the taxon up the classification tree in order to find the first taxonNode.reference?

see also #3992 and #5882

dataportal: #7438


Related issues

Related to Edit - bug #3992: [CHECK] Use last scrutiny instead of sec reference Resolved 01/24/2014
Related to Edit - feature request #5882: option (as new default) to show full citation of accepted name below taxon page title New 01/30/2014
Related to Edit - task #7713: Atomize last scrutiny references In Progress 08/31/2018
Related to Edit - feature request #7438: implement citation suggestion in dataportal Closed 01/27/2014 01/27/2014

Associated revisions

Revision e1d0f581 (diff)
Added by Andreas Müller over 1 year ago

ref #3992, ref #7713, ref #3990 Atomize last scrutiny references

Revision d0c77267 (diff)
Added by Andreas Müller over 1 year ago

ref #3992, ref #7713, ref #3990 add test for differing synonym relation references

History

#1 Updated by Andreas Müller almost 6 years ago

Hi Eckhard,

can you please let us know where this information is exactly stored in the Berlin Model for the family / genus . Screenshot is enough.

#2 Updated by Andreas Müller almost 6 years ago

Maybe the source field can be filled by the sec reference information of each taxon.

#3 Updated by Andreas Müller almost 6 years ago

Hi Eckhard,

richtig, im Berlin Model / E+M Version wird das wie ich finde ein bischen seltsam und redundant gehandelt. Insbesondere habe ich ja immer Probleme mit dem Feld LastScrutiny, da mir der Bedeutungsunterschied zur sec Referenz nicht klar ist.

Ich verstehe, dass das im Berlin Model so gemacht wurde, da dort die sec Referenz ja letzlich mehr zum Rechtemanagement benutzt wurde als eine wirklich Autorenschaft des Taxons zu begründen. Aber ich denke das ist nicht wirklich die Bedeutung der sec Referenz. M.E. ist die sec Referenz gut dafür geeignet, die hier gewünschte Information wiederzuspiegeln.

Rechtemanagement erfolgt im CDM ja dann komplett separat und Personen und Rollenbezogen.

Viele Grüße,

Andreas M.


Von: Raab-Straube von , Eckhard

Gesendet: Freitag, 24. Januar 2014 10:53

An: trac, wp5; Kohlbecker, Andreas; Müller, Andreas

Cc: Guentsch, Anton; Roepert, Dominik

Betreff: AW: [EDIT] #3990: Add citation suggestion to each taxon

Dear All,

Hmmm... Sec reference and authorship can be different from each other in the Berlin Model Database, but I am not sure if this is really wanted or if it is just a kind of work-around.

The screenshot below shows the authorship of Domina & Raab-Straube, but the sec-reference is still "7500000 (jury)". We did not change the sec-reference every time we had new authors for a taxonomic subset of all taxa which belong to a sec reference. Maybe we should do that? Then we would have many more references than we have now, but it may be the cleaner solution.

I cannot enter this information (which we also called "last scrutiny") in the Berlin Model Editor, but it is stored in a table to be filled by people with direct access to the database (@Dominik, @Anton, can you tell Andreas please where exactly this information"last scrutiny" – which is published on the wbesite as "Source" – is stored?)

#4 Updated by Andreas Müller almost 6 years ago

NOTE:

Maybe the current imports do not yet reflect the above described situation correctly and do still fill the Taxon.sec field with current PTRefFK information. I opened a new ticket for this: #3992

#5 Updated by Andreas Müller almost 6 years ago

Anton:

Hallo,

Ich erinnere mich, dass es einen wichtigen Grund gab, warum wir sec. Referenz und last scrutiny getrennt behandeln. Leider fällt mir dieser aber nicht mehr ein. Es müsste aber E-Mail Korrespondenz (zum Beispiel zwischen Walter und Eckhard) dazu geben.

Viele Grüße

Anton

#6 Updated by Andreas Kohlbecker over 5 years ago

  • Keywords set to Euro+Med,Migration

#7 Updated by Andreas Müller over 3 years ago

  • Target version changed from Euro+Med Migration to Euro+Med Portal Release
  • Priority changed from New to Highest

#8 Updated by Andreas Kohlbecker over 3 years ago

  • Assignee changed from Andreas Kohlbecker to Andreas Müller

first of all the question of how to model the citation into the db must be solved

#9 Updated by Andreas Müller over 1 year ago

  • Description updated (diff)
  • Estimated time set to 8.00 h

#10 Updated by Andreas Müller over 1 year ago

  • Related to bug #3992: [CHECK] Use last scrutiny instead of sec reference added

#11 Updated by Andreas Müller over 1 year ago

  • Related to feature request #5882: option (as new default) to show full citation of accepted name below taxon page title added

#13 Updated by Andreas Müller over 1 year ago

  • Subject changed from Add citation suggestion to each taxon to [DISCUSS] How to implement citation suggestion to each taxon
  • Description updated (diff)
  • Category changed from cdm-dataportal to cdmadapter
  • Estimated time changed from 8.00 h to 4.00 h

#14 Updated by Andreas Müller over 1 year ago

#15 Updated by Andreas Müller over 1 year ago

  • Description updated (diff)

#16 Updated by Andreas Müller over 1 year ago

  • Related to task #7713: Atomize last scrutiny references added

#17 Updated by Andreas Müller over 1 year ago

  • Assignee changed from Andreas Müller to Andreas Kohlbecker
  • Target version changed from Euro+Med Portal Release to Release 5.3

The former citations suggestions (deriving from the last scrutiny references, PTaxon.lastScrutinyFk) are now imported as TaxonBase.sec References. Therefore we should take the title Cache of these References as source/citation suggestion.

=> we need the functionality to explicitly cite the accepted taxon secundum references in a separate line with label "Source". This needs to be configurable via data portal admin tools.

#18 Updated by Andreas Müller over 1 year ago

  • Private changed from Yes to No

#19 Updated by Andreas Kohlbecker over 1 year ago

  • Target version changed from Release 5.3 to Release 5.4

#20 Updated by Andreas Müller over 1 year ago

  • Severity changed from normal to critical

This is critical for version 5.4 as needed for E+M

#21 Updated by Andreas Kohlbecker about 1 year ago

  • Status changed from New to Feedback
  • Assignee changed from Andreas Kohlbecker to Andreas Müller

Do you want me to do something about this issue? I think my task was the according implementation in the data-portal.

#22 Updated by Andreas Müller about 1 year ago

Andreas Kohlbecker wrote:

Do you want me to do something about this issue? I think my task was the according implementation in the data-portal.

Correct, your part is described in #7438 .

#23 Updated by Andreas Müller about 1 year ago

  • Status changed from Feedback to Resolved
  • Target version changed from Release 5.4 to Euro+Med Migration
  • % Done changed from 0 to 80

#24 Updated by Andreas Müller about 1 year ago

  • Status changed from Resolved to In Progress

#25 Updated by Andreas Müller 7 months ago

  • Status changed from In Progress to Resolved
  • % Done changed from 80 to 90

The discussion is finished. We may check after migration if everything looks like expected and what still needs to be done.

#26 Updated by Andreas Müller 7 months ago

  • Estimated time changed from 4.00 h to 0.50 h

#27 Updated by Andreas Müller 6 months ago

#28 Updated by Andreas Müller 6 months ago

#29 Updated by Andreas Müller 6 months ago

#30 Updated by Andreas Müller 6 months ago

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