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From 03/05/2019 to 04/03/2019

04/03/2019

07:12 PM bug #8219 (Feedback): Permission denied when creating a new reference with existing inreference f...
Does this come from the `DefaultMatchStrategy`?
What is this `DefaultMatchStrategy` for? This class completely lac...
Andreas Kohlbecker
07:00 PM bug #8219: Permission denied when creating a new reference with existing inreference for which su...
in this case the following properties are changed behind the scenes:
~~~
modified property found: protectedTit...
Andreas Kohlbecker
06:58 PM feature request #8153 (Resolved): Adapt cdmlib to FeatureNode/FeatureTree model changes
from my side we can close it, but I didn't check full code.
Patrick, could you still add "open issues" if you know w...
Andreas Müller
06:53 PM feature request #3836: Implement modifiers and modifying text for Description Elements in TaxEditor
please do first review on nightly Andreas Müller
06:53 PM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
please do first review on nightly Andreas Müller
06:52 PM bug #8190: Default FeatureTree throws exception
please do first review on nightly Andreas Müller
06:51 PM bug #7541: Insufficient rights lead to missing focus in name editor
please do first review on nightly Andreas Müller
01:21 PM bug #7541 (Resolved): Insufficient rights lead to missing focus in name editor
The problem of this ticket is solved. With rem_conf_am and the nightly editor I could not reproduce the missing focus. Katja Luther
06:50 PM feature request #8124: Activate Name Facts in Taxeditor
please do first review on nightly Andreas Müller
06:49 PM feature request #8150: Allow editing the representation label of characters in details view
please do first review on nightly Andreas Müller
06:48 PM feature request #8175: add name facts to cdm light export
please do first review on nightly Andreas Müller
06:47 PM bug #8111 (Feedback): User selection dialog for groups does not filter out existing users
WIth test/rem_conf_am I could not open the dialog at all, but got
~~~
java.lang.NullPointerException
at eu.etax...
Andreas Müller
06:43 PM bug #8148 (Feedback): Login Dialog cuts off information
on the right side there is still missing 1 letter. Not serious but not looking so nice. Andreas Müller
06:42 PM bug #8148: Login Dialog cuts off information
![](picture258-1.png) Andreas Müller
06:37 PM bug #8143 (Closed): It is possible to open multiple instances of the login dialog
Seems to work. Andreas Müller
06:35 PM feature request #8147 (Feedback): Add "plural" to representation detail element
It works in Details View. In Translation Editor the value is not stored if only plural is added. Together with label ... Andreas Müller
06:23 PM bug #8151 (Closed): after creating a new synonym and pasting a name string the default string is ...
Seems to work Andreas Müller
01:30 PM bug #8151: after creating a new synonym and pasting a name string the default string is not removed
Tested on nightly. This works. Patrick Plitzner
06:21 PM task #8162: Move term related classes from model.common to model.term
I think this is well tested in the meanwhile, but maybe everybody can shortly have a look if (s)he thinks that everyt... Andreas Müller
06:21 PM Revision 33bc4ab8 (cdm-vaadin): fixing initial focus for LoginDialog
Andreas Kohlbecker
06:19 PM bug #8220 (In Progress): incomplete creation of blocking registration in case of registering exis...
We, Henning and Andreas decided on the following solution:
* the click on the *existing name* button will open the...
Andreas Kohlbecker
06:18 PM bug #8211 (Feedback): Trigger new search when clicking on identifier search
For me it does not work. I tested on test/euromed.
* Open reference selection dialog,
* entered "6069704" => se...
Andreas Müller
01:34 PM bug #8211: Trigger new search when clicking on identifier search
Tested by switching between identifier and standard search in latest nightly. This works. Patrick Plitzner
05:59 PM feature request #8146 (Resolved): Adapt taxeditor UI to structure and property term type
I adjusted the update script. To test if the script works correctly now we should take a production database and move... Andreas Müller
03:57 PM feature request #8146 (Feedback): Adapt taxeditor UI to structure and property term type
Patrick Plitzner wrote:
> Katja Luther wrote:
> > deleting a feature from termTree throws an exception but removing...
Andreas Müller
03:51 PM feature request #8146: Adapt taxeditor UI to structure and property term type
Katja Luther wrote:
> deleting a feature from termTree throws an exception but removing is successful
>
This ...
Patrick Plitzner
03:15 PM feature request #8146: Adapt taxeditor UI to structure and property term type
* restricting tree selection seems to work
* drag&drop of terms into a term tree works as expected
Katja Luther
03:09 PM feature request #8146: Adapt taxeditor UI to structure and property term type
deleting a feature from termTree throws an exception but removing is successful
~~~ text
login : admin
editor ...
Katja Luther
01:22 PM feature request #8146: Adapt taxeditor UI to structure and property term type
For review check the points in the description and play around with vocabularies and trees of different term types.
...
Patrick Plitzner
05:47 PM Revision 6ae3aa93 (cdmlib): ref #8153 adapt ColumnAdder and ColumnTypeChanger to handle NOT NULL ...
Andreas Müller
05:09 PM Revision a3cfc8c0 (cdm-vaadin): ref #8218 better extraction of the actual cause to be delegatged ...
Andreas Kohlbecker
04:39 PM feature request #8136: Implement sources for type designations in TaxEditor
tested on nightly.
Changing to any *lectotype will show the reference related elements. The reference and the deta...
Patrick Plitzner
04:30 PM feature request #8044: Add "Move to..." menu to term editor
The menu item is only shown when experimental features are enabled. Therefore this can be tested later. Also this opt... Patrick Plitzner
03:52 PM feature request #8044 (Resolved): Add "Move to..." menu to term editor
As the term editor is not experimental this feature is also not experimental. Therefore it should be tested for corre... Andreas Müller
03:05 PM feature request #8044 (Closed): Add "Move to..." menu to term editor
Patrick Plitzner
03:05 PM feature request #8044 (Resolved): Add "Move to..." menu to term editor
Closing this ticket because it is implemented but still experimental. Patrick Plitzner
04:06 PM bug #8088 (Feedback): Open taxon node wizard issues
Tested on nightly.
* taxon selection is possible in edit and new wizard
* #8088#note-7 works
* #8088#note-9 stil...
Patrick Plitzner
03:57 PM Revision 03a2b1f4 (taxeditor): ref #8136 Show micro citation in details view
Patrick Plitzner
03:47 PM feature request #7428 (Feedback): Open issues for updating open data while subtree is updated
Tested on nightly.
![](picture547-1.png)
* Ask for saving before operation starts. -> this is fixed
* Only na...
Patrick Plitzner
03:15 PM feature request #8178: Auto-create absence/presence character for every structure
still experimental feature which will be fully implemented in next release Patrick Plitzner
03:12 PM feature request #6849: [DISCUSS] How to handle "kind of" term creation in TermEditor
Moving to next milestone for further discussion Patrick Plitzner
03:02 PM Revision cf7529d5 (taxeditor): ref #8044 Make "Move to..." experimental
Patrick Plitzner
02:51 PM Revision 6bf65877 (taxeditor): ref #8136: save citation of typeDesignation
Katja Luther
02:00 PM feature request #8096 (Resolved): Implement CacheUpdater as long running task with correct progre...
Patrick Plitzner wrote:
> I tested updating caches with all options on on the lates nightly. The progress bar shows ...
Katja Luther
01:41 PM feature request #8096 (Feedback): Implement CacheUpdater as long running task with correct progre...
I tested updating caches with all options on on the lates nightly. The progress bar shows the current work done and t... Patrick Plitzner
01:59 PM Revision e627dccd (taxeditor): ref #8096: subtask name is the same as task name
Katja Luther
01:55 PM Revision 5354f8db (taxeditor): ref #8115: drag&drop is not allowed for not persisted elements in ...
Katja Luther
01:38 PM bug #8200: Changing title(cache) for factual data set not possible
It's more a general question how this should be handled. So it is a question to all of us. Katja Luther
01:36 PM bug #8200: Changing title(cache) for factual data set not possible
should this be moved back to PP? Andreas Müller
12:54 PM bug #8200 (Feedback): Changing title(cache) for factual data set not possible
> High priority as unexpected behavior and even wanted titles like "Moved from ..." can get lost this way.
The def...
Katja Luther
01:35 PM feature request #8122: Implement selection of modifier vocabulary for structures and properties
Moving to next release as we have to discuss if this is really needed Patrick Plitzner
01:28 PM feature request #8011 (Closed): Implement term search view
Closing this ticket because it is implemented but still experimental. Patrick Plitzner
01:26 PM bug #8115: NPE when moving factual data
I tested on the latest nightly: The new description does not get deleted this time. But the new abstract that has bee... Patrick Plitzner
01:20 PM feature request #8121 (Closed): Allow selecting structural/property modifiers when creating a cha...
Closing this ticket because it is implemented but still experimental. Patrick Plitzner
01:19 PM feature request #7923 (Closed): Add context menu and drag'n'drop to CharacterEditor
Closing this ticket because it is implemented but still experimental Patrick Plitzner
12:21 PM Revision b0b1cfbe (taxeditor): Remove character term editor menu item
Patrick Plitzner
12:21 PM Revision 28c02ec4 (taxeditor): Remove "New kindOf" menu item
Patrick Plitzner
10:32 AM Revision ee512dbf (taxeditor): ref #8189 using getCdmHomeDirFallback() when the appcontext is not...
Andreas Kohlbecker
10:17 AM Revision bdc08221 (taxeditor): ref #8189 using getCdmHomeDirFallback() when the appcontext is not...
Andreas Kohlbecker
10:15 AM Revision 945508b5 (cdmlib): ref #8189 fallback method for getCdmHomeSubDir() and fixing bug in ge...
Andreas Kohlbecker
09:13 AM feature request #7920 (In Progress): Possibility to define area specific status selection
Katja Luther

04/02/2019

07:25 PM bug #8220: incomplete creation of blocking registration in case of registering existing name whic...
Did I miss something?
Two points are important:
1) To avoid name duplicates
2) To prompt users to register the use...
Wolf-Henning Kusber
06:54 PM bug #8220 (Feedback): incomplete creation of blocking registration in case of registering existin...
this needs to be discussed Andreas Kohlbecker
06:52 PM bug #8220 (Closed): incomplete creation of blocking registration in case of registering existing ...
![](picture530-1.png)
![](picture530-2.png)
Andreas Kohlbecker
06:32 PM bug #8219: Permission denied when creating a new reference with existing inreference for which su...
this is most probably once again a problem related to a field of the reference modified during the data management do... Andreas Kohlbecker
06:30 PM bug #8219 (Rejected): Permission denied when creating a new reference with existing inreference f...
This happened in the following case.
* User andreas (submitter)
* regStart view
* create new reference with "*A...
Andreas Kohlbecker
06:05 PM bug #8217 (Resolved): ToManyRelatedEntitiesComboboxSelect edit button not enabled
Please review with user **submitter** and **curator** Andreas Kohlbecker
01:51 PM bug #8217 (Closed): ToManyRelatedEntitiesComboboxSelect edit button not enabled
In the TaxonNamePopupEditor the edit button of the Basionyms should always be enabled even if the editor which would ... Andreas Kohlbecker
06:04 PM Revision e38b81a7 (cdm-vaadin): ref #8217 enabling ToManyRelatedEntitiesComboboxSelect and fixing...
Andreas Kohlbecker
06:03 PM bug #8218 (Closed): Show appropriate error message when accessing RegistrationWorkingsetEditor wi...
Andreas Kohlbecker
03:56 PM bug #8218 (Resolved): Show appropriate error message when accessing RegistrationWorkingsetEditor ...
Applied in changeset commit:cdm-vaadin|bbe0f8d54845856f7642b54a6ecc96dc3bf7eaa2. Andreas Kohlbecker
03:53 PM bug #8218 (Closed): Show appropriate error message when accessing RegistrationWorkingsetEditor wi...
The RegistrationWorkingsetEditor currently shows the default error dialog when being accessed without the required p... Andreas Kohlbecker
05:50 PM Revision 6d74a77f (cdm-vaadin): ref #8217 proper setting of the readonly state for ToManyRelatedE...
Andreas Kohlbecker
04:06 PM bug #7406 (Resolved): [CHECK] Check if all original source names of occurrences are correctly imp...
Should be resolved. Check again before closing. Andreas Müller
04:03 PM bug #7406 (In Progress): [CHECK] Check if all original source names of occurrences are correctly ...
Check results for bellis perennis in Sicily if no duplicate sources exist anymore. The duplicates can not be seen in ... Andreas Müller
04:02 PM bug #7406: [CHECK] Check if all original source names of occurrences are correctly imported
It looks like this is correct now. However, there were >3500 duplicates in emOccurrenceSource with same OccFk, Source... Andreas Müller
03:56 PM Revision bbe0f8d5 (cdm-vaadin): fix #8218 implementing PermissionDeniedErrorHandler to handle all...
Andreas Kohlbecker
03:49 PM Revision 61dee665 (taxeditor): ref #8146 Adjust term type check
Patrick Plitzner
02:16 PM Revision e05131c1 (cdm-vaadin): avoiding RegistrationWorkingsetPresenters to handle events from f...
- pushing common EditorActionContext methods up
- checking for own view in context root
Andreas Kohlbecker
01:41 PM task #7798 (Resolved): [AM, ERS]: Import (freetext) nameInSource correctly
Andreas Müller wrote:
> Eckhard noch fragen, was mit den Namen geschehen soll, bei denen LinkedName und FreeTextName...
Andreas Müller
01:24 PM Revision 4adf618f (cdmlib): ref #8189 fixing invalid NULL check
Andreas Kohlbecker
12:06 PM feature request #5873: Implement rights&roles for TaxEditor distribution editor
We should at least very soon know, how far rights&role work for distribution editor. And define what still needs to b... Andreas Müller
11:32 AM Revision c1460d6c (cdmlib): ref #8189 removing useless trailing slashes
Andreas Kohlbecker
11:09 AM Revision da8a5db3 (cdmlib): toString() method for RegistrationWorkingSet
Andreas Kohlbecker
10:21 AM bug #8216 (New): Layout issue UI in IE
Test with IE 11.0.115
Small layout issue: blue bar is not visilbe, see screen shot.
Functionality okay, including...
Wolf-Henning Kusber
08:30 AM Revision 2580ff7a (cdmlib): ref #8115: adapt test
Katja Luther

04/01/2019

06:15 PM feature request #7548 (In Progress): RegistrationWorkingSetEditor loads slowly with big working sets
Andreas Kohlbecker
06:14 PM Revision fadb1f53 (cdm-vaadin): ref #7548 relaoding of the workingset only when a 'root' popupedi...
Andreas Kohlbecker
05:57 PM bug #8214 (In Progress): WeaklyRelatedEntityCombobox is not validated
the field should only be set on error if the user tries to save the editor or when the focus leaved the field. Otherw... Andreas Kohlbecker
05:53 PM bug #8214: WeaklyRelatedEntityCombobox is not validated
please review Andreas Kohlbecker
04:09 PM Revision 4d06c9a3 (cdmlib): ref #7433: add controller method to get dnaSample for given geneticAc...
Katja Luther
04:07 PM Revision d54f179a (cdmlib): ref #8115: do not delete description when moving the last element
Katja Luther
04:07 PM Revision 72631511 (cdmlib): ref #8096: minor
Katja Luther
03:54 PM bug #7703: Multiple names cannot be shown in TypeDesignationDetailElement for specimens
Moving to 5.7 because it doesn't have highest priority Patrick Plitzner
03:48 PM Revision 341fa6e3 (cdmlib): ref #8190 Fix termType in FeatureNode creation
Patrick Plitzner
03:40 PM Revision d1ff60c6 (cdmlib): ref #7700:smaller changes in TypeDesignationManager (add fide citation)
Katja Luther
03:26 PM Revision 865b0f31 (cdmlib): revert controller method in OccurenceListController
Katja Luther
03:11 PM bug #8190: Default FeatureTree throws exception
commit:cdmlib|6850fcf9bff05af4a123d77be88f98049d256423. Patrick Plitzner
02:55 PM Revision 0e6db332 (cdmlib): adapt ConfigFileUtils to handle file access without appllication context
Katja Luther
01:50 PM bug #8050 (Resolved): Create blocking registrations for un-registered names which are to be used ...
I consider this issue as being completed, please review Andreas Kohlbecker
01:49 PM Revision 8feb2342 (cdmlib): ref #7433: add controller method to get dnaSample for given geneticAc...
Katja Luther
01:14 PM bug #8211: Trigger new search when clicking on identifier search
please review.
You need some references with additional identifiers.
Katja Luther
01:14 PM bug #8211 (Resolved): Trigger new search when clicking on identifier search
Applied in changeset commit:taxeditor|fbd5dac1173dd4e19ba9e470b3d4726e0275ed08. Katja Luther
01:14 PM Revision fbd5dac1 (taxeditor): fix #8211: trigger new search if identifier search is selected
Katja Luther
12:30 PM bug #8213 (Closed): MySQLSyntaxErrorException with 'Submitter' user acessing view registration#!r...
problem solved. Andreas Kohlbecker
12:28 PM bug #8213 (Resolved): MySQLSyntaxErrorException with 'Submitter' user acessing view registration#...
Applied in changeset commit:cdm-vaadin|e001877db8b2aadba14c286801d7f23e91dee120. Andreas Kohlbecker
12:28 PM Revision e001877d (cdm-vaadin): fix #8213 fixing db query for users witch have not created any re...
Andreas Kohlbecker
11:32 AM task #7515 (In Progress): TypeDesignationStatusComparator to sort by vocabulary first and then by...
Katja Luther
11:32 AM task #7515: TypeDesignationStatusComparator to sort by vocabulary first and then by term order
now TypeDesignationStatusComparator inherit from OrderedTermBaseComparator Katja Luther
11:27 AM Revision ba6cefb5 (cdmlib): ref #7515: TypedesignationStatusComparator inherit from OrderedTermCo...
Katja Luther
11:24 AM feature request #8058 (In Progress): Further issues for (local) preferences
I don't know why the dialog height is not set correctly.
The language issues are implemented.
Katja Luther
11:21 AM feature request #3836 (Resolved): Implement modifiers and modifying text for Description Elements...
This is implemented now, please review Katja Luther
11:07 AM feature request #8215 (Closed): User demand: sorting order in reference editor
Reference editor:
Author and in-Ref are sorting "contains".
User demand: sorting should be "begins with"
Example...
Wolf-Henning Kusber

03/29/2019

06:44 PM Revision 7d6b1e3a (cdm-vaadin): ref #8107 ref #8099 reverting changes which have been picked from...
Andreas Kohlbecker
06:21 PM Revision ee53ccf7 (cdm-vaadin): fix #8214 fixing required validation for WeaklyRelatedEntityCombo...
Andreas Kohlbecker
06:21 PM bug #8214 (Resolved): WeaklyRelatedEntityCombobox is not validated
Applied in changeset commit:cdm-vaadin|ddb31e64c51be1fd555999535863cebe68a6bd8d. Andreas Kohlbecker
04:06 PM bug #8214 (Closed): WeaklyRelatedEntityCombobox is not validated
WeaklyRelatedEntityComboboxes set to required are not validated on form submission.
If affects the TaxonNamePopupEditor
Andreas Kohlbecker
06:20 PM Revision ddb31e64 (cdm-vaadin): fix #8214 fixing required validation for WeaklyRelatedEntityCombo...
Andreas Kohlbecker
04:02 PM Revision 580d5157 (cdm-vaadin): ref #8050 validing related name nomenclatural reference to requir...
Andreas Kohlbecker
04:02 PM Revision 595150ac (cdm-vaadin): ref #8099 better logging of error conditions and more robust erro...
Andreas Kohlbecker
03:59 PM bug #8213 (Closed): MySQLSyntaxErrorException with 'Submitter' user acessing view registration#!r...

~~~
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; ...
Andreas Kohlbecker
03:23 PM Revision 9b7d57ff (cdmlib): ref #8189 providing fallback method to retrieve the ~/.cdmLibrary fol...
Andreas Kohlbecker
02:50 PM Revision 77056dda (cdm-vaadin): ref #8099 better logging of error conditions and more robust erro...
Andreas Kohlbecker
02:39 PM bug #8099: Error saving name type designation editor due to problem in poupeditor context
this exception augments another exception which happened during the save() operation. Any information on the original... Andreas Kohlbecker
02:31 PM Revision 6062e4a0 (cdm-vaadin): ref #8050 validing related name nomenclatural reference to requir...
Andreas Kohlbecker
02:03 PM Revision f020b39e (cdmlib): ref #7920: add new predicate for per area status preferences
Katja Luther
02:00 PM Revision 683a21a5 (cdmlib): Fix potential NPE
Patrick Plitzner
12:50 PM Revision 12b0669d (taxeditor): ref #7932: add getBestMatching method using preferenceResolver in ...
Katja Luther
12:50 PM Revision fa1dc0a8 (taxeditor): ref #7932: add getBestMatching method using preferenceResolver in ...
Katja Luther
12:08 PM bug #8212: when closing media view, the factual data view becomes empty
the problem is that it is not possible to set the focus on the name editor again after removing the media view. when ... Katja Luther
11:07 AM bug #8212 (New): when closing media view, the factual data view becomes empty
Katja Luther

03/28/2019

07:55 PM feature request #7860: [Master] Remaining E+M editor issues
Urgent for E+M and therefore should be handled latest in 5.7. But especially important is the task covered by #7920 Andreas Müller
07:52 PM feature request #7920: Possibility to define area specific status selection
This is urgent for E+M and should be handled very soon. Latest in 5.7 but if possible in 5.6 Andreas Müller
07:34 PM task #7455 (Resolved): [Check] Check all markers for correctnes
After import we should still check if need those markers with small count. Therefore do not close completely. Andreas Müller
02:09 PM feature request #7865 (Resolved): Remaining factual data view label issues
this should be fixed by fixing #8200 Patrick Plitzner
02:08 PM bug #8200 (Resolved): Changing title(cache) for factual data set not possible
I replaced the label with a toggleable cache field.
How it works now: When setting the cache to unprotected (closi...
Patrick Plitzner
02:04 PM Revision fd9044a1 (taxeditor): ref #8200 Replace description label with cache element in details ...
- Fix potential cache update problems Patrick Plitzner
01:07 PM Revision e6d23538 (taxeditor): ref #8200 Remove unnecessary refresh
Patrick Plitzner
10:59 AM bug #8211 (Closed): Trigger new search when clicking on identifier search
in reference search dialog a new search should be triggered if identifier search is clicked Katja Luther
10:09 AM bug #8210 (New): During search in bulk editor it is not possible to select items
As running a search is done in another thread and the list is updated asynchronously it is not possible to select an ... Patrick Plitzner
08:47 AM task #8209 (Resolved): use ellypsed references for all reference comboboxes
use the `ReferenceEllypsisFormatter` which has been implemented for #7951 in all reference comboboxes Andreas Kohlbecker
08:40 AM bug #8050: Create blocking registrations for un-registered names which are to be used in nomencla...
Wolf-Henning Kusber wrote:
> Solution 1 should also preclude name duplicates.
this should be handled in a separat...
Andreas Kohlbecker
08:39 AM feature request #8121 (Resolved): Allow selecting structural/property modifiers when creating a c...
Patrick Plitzner
08:39 AM feature request #8208 (New): Allow selecting property modifiers when creating a character
copied from #8121 Patrick Plitzner
08:38 AM feature request #8207 (New): RegistrationUI: helps avoid name duplicates
When ever a user is about to create a new name, the system should check for potential duplicates of the name to be cr... Andreas Kohlbecker
08:34 AM feature request #7923 (Resolved): Add context menu and drag'n'drop to CharacterEditor
Patrick Plitzner
08:33 AM feature request #8146 (Resolved): Adapt taxeditor UI to structure and property term type
Patrick Plitzner
08:27 AM feature request #8011 (Resolved): Implement term search view
Patrick Plitzner

03/27/2019

05:59 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
Eckhard noch fragen, was mit den Namen geschehen soll, bei denen LinkedName und FreeTextName nicht übereinstimmen.
D...
Andreas Müller
05:58 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
ERS decided to use synonymie names whereever possible. Equalness of existence of authors is not so important.
With t...
Andreas Müller
05:57 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomencla...
Solution 1 should also preclude name duplicates. Wolf-Henning Kusber
05:36 PM bug #8050 (In Progress): Create blocking registrations for un-registered names which are to be us...
We agreed on solution 1. from above: "*Require the user to add a reference to the name before the popup editor in whi... Andreas Kohlbecker
01:12 PM bug #8050 (Feedback): Create blocking registrations for un-registered names which are to be used ...
There will be situations in which the existing name will not yet have a nomenclatural reference. Creating a Registrat... Andreas Kohlbecker
05:36 PM feature request #7894 (Resolved): [CHECK] Import sourceNumber as Identifier for references
Andreas Müller
04:32 PM bug #7963: TaxonNamePopEditor: name part field visibility not correct for all ranks
done!
For the rank "unknown rank" only the uninomial field is shown
For the remaining tasks formulated in the d...
Andreas Kohlbecker
04:16 PM bug #7963 (Resolved): TaxonNamePopEditor: name part field visibility not correct for all ranks
Applied in changeset commit:cdm-vaadin|a0643e2c0aa12a7c83f208bf2709dc06a163befb. Andreas Kohlbecker
04:27 PM Revision 712e49c6 (cdm-vaadin): ignoring workbench.xmi
Andreas Kohlbecker
04:24 PM Revision dcf5e676 (cdm-vaadin): fix #7963 trating UNKNOWN Rank class as super-specific
Andreas Kohlbecker
04:18 PM Revision b2261934 (cdm-vaadin): ignoring workbench.xmi
Andreas Kohlbecker
04:16 PM Revision a0643e2c (cdm-vaadin): fix #7963 trating UNKNOWN Rank class as super-specific
Andreas Kohlbecker
03:54 PM bug #8197 (Closed): Deleting Media from Image Gallery View does not make view dirty
works fine Patrick Plitzner
02:45 PM bug #8197 (Resolved): Deleting Media from Image Gallery View does not make view dirty
this should be fixed now. The operation is executed while saving now. Katja Luther
03:47 PM task #7935 (Feedback): Discuss new solution to establish the communication between submitter and ...
Hi Henning,
is there anything left to discuss regarding this issue?
Andreas
Andreas Kohlbecker
03:46 PM Revision 032b62c4 (taxeditor): ref #7428: update all name editors involved when executing subtree...
Katja Luther
03:45 PM Revision 9e1446d2 (taxeditor): ref #7428: update all name editors involved when executing subtree...
Katja Luther
03:44 PM feature request #7968 (Closed): ReferenceEditor: optional validation for completenes of Partial v...
fully implemented but untestable since the system apparently does not allow to use incomplete Partials in the vaadin UI. Andreas Kohlbecker
03:42 PM feature request #7968 (Resolved): ReferenceEditor: optional validation for completenes of Partial...
Applied in changeset commit:cdm-vaadin|f8fda7a9f00c1e87430c03d06bbcfcff44aa7ff4. Andreas Kohlbecker
02:56 PM feature request #7968 (In Progress): ReferenceEditor: optional validation for completenes of Part...
Andreas Kohlbecker
03:43 PM Revision 10d072e7 (cdm-vaadin): fix #7968 validators for completeness of Partial and TimePeriod
Andreas Kohlbecker
03:42 PM Revision f8fda7a9 (cdm-vaadin): fix #7968 validators for completeness of Partial and TimePeriod
Andreas Kohlbecker
03:40 PM Revision 981b5cfb (taxeditor): minor
Katja Luther
03:00 PM bug #7833 (Rejected): submitters can access see any registration in any RegistrationWorkingSet
Andreas Kohlbecker
02:40 PM Revision 5e966d50 (taxeditor): ref #8197: fix delete of media in media view
Katja Luther
02:27 PM bug #8206 (New): Editing references with missing update rights should not be possible
Actually it is possible to edit references without the UPDATE right for references. While saving the user gets an exc... Katja Luther
02:17 PM Revision a6edfc5a (cdm-vaadin): ref #8050 fixing bug in reloadRegistrtions() and removing remain ...
Andreas Kohlbecker
01:47 PM Revision ee57c0d9 (cdm-vaadin): ref #8050 fixing bug in reloadRegistrtions() and removing remain ...
Andreas Kohlbecker
11:43 AM Revision f1e0b490 (cdmlib): comments and doc for IRegistrationService
Andreas Kohlbecker
11:39 AM Revision 7ebcfd4b (cdm-vaadin): ref #8184 reverting typedesignation status filter back to ListSelect
Andreas Kohlbecker
11:36 AM Revision 8af7fcc2 (cdm-vaadin): ref #8050 creating blocking registrations for exising names which...
Andreas Kohlbecker
11:35 AM Revision eee96dac (cdm-vaadin): ref #8050 moving transactional code from RegistrationWorkingsetPr...
Andreas Kohlbecker
11:30 AM Revision 4e29c10f (cdm-vaadin): ref #8050 creating blocking registrations for exising names which...
Andreas Kohlbecker

03/26/2019

05:14 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomencla...
Wenn man versehentlich einen falschen namen z.B. als Basionym auswählt, würde dann für diesen Namen eine Blocking-Reg... Andreas Kohlbecker
05:05 PM Revision 68afc0ec (cdm-vaadin): ref #8050 moving transactional code from RegistrationWorkingsetPr...
Andreas Kohlbecker
03:57 PM bug #8149 (Closed): ReferenceEditor: filter inReferences ONLY by applicable reference type suppes...
Henning, says this is tested and works as expected. Andreas Kohlbecker
03:55 PM bug #8194 (Closed): LazyInitializationException (LIE) on deleting the nomenclatural referenz (Se...
Andreas Kohlbecker
03:54 PM bug #8194: LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of...
We agreed on :
> 1. hide the delete button in this situation and implement #8204
Warning is sufficient, we don'...
Andreas Kohlbecker
03:53 PM feature request #8204: RegistrationWorkingsetEditor shows list of unused sections and allows for ...
nice to have Andreas Kohlbecker
03:48 PM bug #4545 (Closed): Implement TeamOrPersonBaseSelectionDialog
The selection dialog works like the other selection dialogs. Institution, as the only sub class of AgentBase that sho... Patrick Plitzner
03:44 PM bug #8191 (Closed): ReferencePopupEditor: When coming from NameEdior editing of the inreference s...
Andreas Kohlbecker
03:38 PM bug #8197 (Feedback): Deleting Media from Image Gallery View does not make view dirty
Now the name editor is set to dirty but if it is closed without saving the media is removed anyways. So either the me... Patrick Plitzner
08:47 AM bug #8197: Deleting Media from Image Gallery View does not make view dirty
this should be fixed, please review. Katja Luther
03:30 PM bug #8192 (Closed): The curator must be able to unlock a published registration for edition
Andreas Kohlbecker
09:19 AM bug #8115: NPE when moving factual data
this is because the description only contains a not persisted description element and this is not available when the ... Katja Luther

03/25/2019

06:58 PM bug #8192: The curator must be able to unlock a published registration for edition
Checked in Test-System with two names of Nupela, registered 2018-11-02.
TypeSpecimen: unlock and add a type: works...
Wolf-Henning Kusber
02:50 PM bug #8192 (Resolved): The curator must be able to unlock a published registration for edition
done, please review Andreas Kohlbecker
05:46 PM bug #8191: ReferencePopupEditor: When coming from NameEdior editing of the inreference should not...
I was able to include new journal names in Basionym references. I included sections in the name editor and was able t... Wolf-Henning Kusber
02:51 PM bug #8191 (Resolved): ReferencePopupEditor: When coming from NameEdior editing of the inreference...
please review Andreas Kohlbecker
05:28 PM bug #8050 (In Progress): Create blocking registrations for un-registered names which are to be us...
Andreas Kohlbecker
04:45 PM bug #7962: PopupEditors: *DTO in context 'breadcrumbs' to be transformed into more humane labels
Please review Andreas Kohlbecker
04:42 PM bug #7962 (Resolved): PopupEditors: *DTO in context 'breadcrumbs' to be transformed into more hu...
Applied in changeset commit:cdm-vaadin|8745f04714df865f1780025b43b24b9eaa5a198a. Andreas Kohlbecker
04:43 PM Revision 89659534 (cdm-vaadin): fix #7962 "New" or "Edit" information and humane lables for DTO e...
Andreas Kohlbecker
04:42 PM Revision 8745f047 (cdm-vaadin): fix #7962 "New" or "Edit" information and humane lables for DTO e...
Andreas Kohlbecker
02:56 PM Revision 34d43087 (cdm-vaadin): ref #8191 intoducing the long awaited EditorFormConfigurator for ...
Andreas Kohlbecker
02:56 PM Revision cd93f49b (cdm-vaadin): ref #8192 unlock button to allow curator and admin to edit publis...
Andreas Kohlbecker
02:48 PM Revision f151a6f9 (cdmlib): ref #8188 adding empty hibernate.properties for main to satisfy Prope...
Andreas Kohlbecker
02:17 PM feature request #8033 (Duplicate): Add/Enable absent/present state for every character
duplicates #8178 Patrick Plitzner
02:13 PM Revision 61c21b1e (cdm-vaadin): ref #8188 adding empty hibernate.properties for main to satisfy P...
Andreas Kohlbecker
01:15 PM Revision a4b97169 (cdm-server): ref #8189 cdm-server stores parameters as initParameter instead a...
Andreas Kohlbecker
01:13 PM Revision 6dd0caa2 (cdmlib): ref #8189 better reporting of error conditions in AbstractWebApplicat...
Andreas Kohlbecker
10:12 AM feature request #8153: Adapt cdmlib to FeatureNode/FeatureTree model changes
By introducing the generics this is probably done. There is still some code which does not use/specify generics but t... Patrick Plitzner

03/23/2019

09:37 AM Revision ae855a23 (cdmlib-apps): Import E+M details notes as name notes
Andreas Müller

03/22/2019

12:11 AM Revision febf715a (cdmlib-apps): adapt app-import to new AccountStore package
Andreas Müller
11:53 PM Revision 2f2c4477 (cdmlib): minor
Andreas Müller
11:53 PM Revision 3bde5f80 (cdmlib): fix bug in term type check
Andreas Müller
11:28 PM Revision 78159090 (cdm-vaadin): ref #8191 intoducing the long awaited EditorFormConfigurator for ...
Andreas Kohlbecker
11:06 PM Revision 6850fcf9 (cdmlib): fix term type check in FeatureNode
Andreas Müller
10:29 PM Revision fad2732b (cdmlib): Revert "Remove useless check"
This reverts commit 1a4fdfe5c12c655451e25c567f656a8df0f1b9a5. Andreas Müller
09:32 PM Revision 16580b3c (cdm-vaadin): ref #8192 unlock button to allow curator and admin to edit publis...
Andreas Kohlbecker
09:31 PM Revision 97c6b732 (cdm-vaadin): ref #8184 reverting typedesignation status filter back to ListSelect
Andreas Kohlbecker
07:58 PM bug #8075 (Resolved): multiple cascase all-delete-orphan exceptions related to DefinedTermBase.re...
Andreas Kohlbecker
07:49 PM bug #8075: multiple cascase all-delete-orphan exceptions related to DefinedTermBase.representations
potentially fixed through the changes made for #8160, #7106 Andreas Kohlbecker
07:57 PM bug #8158 (Resolved): cascade="all-delete-orphan" problem when ....
potentially fixed through the changes made for #8160, #7106 Andreas Kohlbecker
07:56 PM bug #7881 (Resolved): reference selection combobox broken after error in ...
potentially fixed through the changes made for #8160, #7106 Andreas Kohlbecker
07:51 PM bug #8065 (Feedback): HibernateException: corrupt session problem breaks SpecimenTypeDesignationw...
potentially fixed through the changes made for #8160, #7106 Andreas Kohlbecker
07:36 PM Revision fd6328a5 (cdmlib): minor changes in TermLoader
Andreas Müller
07:21 PM Revision 16ee34cb (cdm-vaadin): fix #8184 using NativeSelect instead of ListSelect to avoid circu...
Andreas Kohlbecker
07:21 PM Revision 68d2ffb7 (cdm-vaadin): fix #8149 inclusion of NULL and Genric ref types optional and fix...
Andreas Kohlbecker
07:20 PM bug #8149: ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic...
please review Andreas Kohlbecker
07:18 PM bug #8149 (Resolved): ReferenceEditor: filter inReferences ONLY by applicable reference type supp...
Applied in changeset commit:cdm-vaadin|27820075a6585b46648a6f1dcd4241a6b45596d8. Andreas Kohlbecker
07:19 PM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser
please review with Heba if this still occurs Andreas Kohlbecker
07:18 PM bug #8184 (Resolved): SpecimenTypedesignationEditor: add new specimen broken Chrome browser
Applied in changeset commit:cdm-vaadin|86f09e7b2e34f272b2f4769f5f7fb3729fea7ef7. Andreas Kohlbecker
07:18 PM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser
this seems to be a bug in the ListSelect which affects the Chrome browser Andreas Kohlbecker
07:16 PM Revision 86f09e7b (cdm-vaadin): fix #8184 using NativeSelect instead of ListSelect to avoid circu...
Andreas Kohlbecker
06:42 PM Revision 27820075 (cdm-vaadin): fix #8149 inclusion of NULL and Genric ref types optional and fix...
Andreas Kohlbecker
06:28 PM feature request #8180 (In Progress): Add property term "Presence/Absence" to CDM default terms
Andreas Müller
06:28 PM feature request #8153 (Feedback): Adapt cdmlib to FeatureNode/FeatureTree model changes
is this still an open issue? If yes, can you give more inside? Andreas Müller
06:13 PM bug #8183 (In Progress): Make Feature IndividualAssociation a generalization of Specimen and Obse...
Andreas Müller
06:07 PM Revision 1064bb88 (cdmlib-apps): ref #7669 latest changes to Greece Willing images import, incl....
Andreas Müller
04:35 PM bug #8205 (New): SpecimenTypeDesignationsEditor: Fist selection of mediaReference gets lost
Permanent bug:
Image Reference is selected for the first time -> selected but not gets lost when clicking in another...
Wolf-Henning Kusber
03:51 PM bug #8194 (Feedback): LazyInitializationException (LIE) on deleting the nomenclatural referenz (...
Even if the LazyInitializationException is avoided deletion of the section is impossible since it is still in use as ... Andreas Kohlbecker
03:38 PM Revision 9817d054 (cdm-vaadin): updating poms for 5.5.4 branch with snapshot versions
jenkins
03:32 PM Revision d8ec06ee (cdm-vaadin): removing useless session flush in CdmStore.delete function
Andreas Kohlbecker
03:32 PM bug #8115: NPE when moving factual data
I just tested it with cdmlib and taxeditor completely up-to-date. I tested on a copy of flora of greece this time to ... Patrick Plitzner
02:06 PM bug #8115: NPE when moving factual data
Did you test with the actual cdmlib version?
cdmlib was not build until this morning.
Katja Luther
01:46 PM bug #8115 (Feedback): NPE when moving factual data
Now saving in step 4 works but the description with the description from which the element was moved away from disapp... Patrick Plitzner
03:31 PM feature request #8204 (New): RegistrationWorkingsetEditor shows list of unused sections and allow...
the RegistrationUI does not allow deleting unused sections. The RegistrationWorkingsetEditor could show the list of u... Andreas Kohlbecker
03:24 PM bug #8203 (New): Adapt specimen page title to record basis
The current specimen page hast "Specimen" written in the title despite the actual record basis
Example: http://por...
Patrick Plitzner
03:15 PM Revision eacea571 (cdmlib): ref #8189 DataSourceConfigurer @Autowiring ConfigFileUtil to init thi...
Andreas Kohlbecker
02:50 PM bug #8202 (New): Multiple representations exception when reusing image in image gallery
In Flora of Greece I tried to move an image from taxon Anchusa aegyptiaca to Anchusella variegata.
I did this by fir...
Andreas Müller
02:39 PM task #8201 (New): test all delete functionality in the RegistrationUI
Andreas Kohlbecker
02:35 PM bug #8200 (Closed): Changing title(cache) for factual data set not possible
When trying to change the title of a factual data set in details view the old title is recreated during save.
Corr...
Andreas Müller
02:32 PM bug #8197 (Resolved): Deleting Media from Image Gallery View does not make view dirty
Applied in changeset commit:taxeditor|02bb31eada6b7edfb3c3d155bb13ad967428aa56. Katja Luther
02:22 PM bug #8197 (Closed): Deleting Media from Image Gallery View does not make view dirty
... therefore one may think that the media is deleted but it is not after reload. This is dangerous therefore high pr... Andreas Müller
02:32 PM Revision 02bb31ea (taxeditor): fix #8197: fix make name editor dirty if media is deleted
Katja Luther
02:26 PM feature request #8199 (New): ReferencePage: show the relation of orthographic corrections to the ...
in case of an orthographic correction both names which are related this way belong to the same publication.
In the...
Andreas Kohlbecker
02:24 PM bug #8198 (New): Deleting an image gallery from image gallery view shows wrong configuration dialog
It shows the same dialog like when deleting media, but the image gallery is something else. Image galleries should no... Andreas Müller
02:16 PM feature request #8196 (In Progress): display ortographic corrections in name relations as 'correc...
ortographic corrections are to be displayed as last entries in the name relations:
* corrected name: <nameCache> [...
Andreas Kohlbecker
01:54 PM Revision 3480974e (cdm-vaadin): ref #7356 ignoring selenide tests for now since they conflict wit...
Andreas Kohlbecker
01:53 PM Revision a630e869 (cdm-vaadin): ref #7356 documentation on setting up the project for selenide tests
Andreas Kohlbecker
01:33 PM feature request #8195 (New): TaxonNamePopupEditor: offer Reference and RuleConsidered fields for ...
in contrast to earlier considerations for *Replaced Synonyms* it is also important to enter data into the Reference a... Andreas Kohlbecker
12:58 PM Revision 460fe6fd (cdmlib): ref #8189 DataSourceConfigurer using ConfigFileUtil correctly
Andreas Kohlbecker
11:35 AM Revision ab611430 (taxeditor): ref #8189 organizing imports for ConfigFileUtil
Andreas Kohlbecker
11:26 AM Revision 55c390a0 (taxeditor): ref #8189 adapting taxeditor to changes in CdmUtils and ConfigFile...
Andreas Kohlbecker
09:08 AM bug #8190 (Resolved): Default FeatureTree throws exception
I extended the type check to also allow subtypes in the term tree Patrick Plitzner
08:53 AM Revision b7d3a480 (cdmlib): ref #8190 Fix potential NPE
Patrick Plitzner

03/21/2019

07:03 PM bug #8192: The curator must be able to unlock a published registration for edition
use the lock and unlock icons from fontawesome:
https://fontawesome.com/icons/lock-open?style=solid
https://fon...
Andreas Kohlbecker
06:32 PM bug #8192 (Closed): The curator must be able to unlock a published registration for edition
The curator sometimes needs to modify the data for a registration after it has been published.
Currently it is req...
Andreas Kohlbecker
07:01 PM bug #8194: LazyInitializationException (LIE) on deleting the nomenclatural referenz (Section) of...
Initializing the authorteam of the inReferences of the references loaded by the combobox should solve the problem. Andreas Kohlbecker
06:59 PM bug #8194 (Closed): LazyInitializationException (LIE) on deleting the nomenclatural referenz (Se...

Habe die Section des eines Namens die als nomenklatorische Referenz gesetzt war löschen wollen:
http://phycoba...
Andreas Kohlbecker
06:53 PM Revision cf9ba327 (cdmlib): ref #8189 cdmlib-remote.properties as not required property source fi...
Andreas Kohlbecker
06:46 PM feature request #8193 (Closed): TaxonNamePopupEditor: add select form element for Nomenclatural s...
Enable to add a nomenclatural status from a subset of status (see TaxEditor).
Exception invalid name in valitation =...
Wolf-Henning Kusber
06:26 PM bug #8191 (Closed): ReferencePopupEditor: When coming from NameEdior editing of the inreference s...
By now when opening the ReferenceEditor for inReference of a TaxonName the user can not modify or set a new inreferen... Andreas Kohlbecker
06:04 PM Revision 7f0f28bb (cdmlib): upgrading jetty-maven-plugin to 9.4.15.v20190215
Andreas Kohlbecker
04:44 PM Revision 72cbb7ab (cdm-vaadin): ref #7356 foundation for selenide tests implemented
Andreas Kohlbecker
04:32 PM Revision 3870ac74 (cdm-vaadin): ref #7356 adding selenide and spring-boot dependencies
Andreas Kohlbecker
04:30 PM Revision 17f913df (cdmlib): ref #8189 removing unnecessary dependency from cdmlib-commons
Andreas Kohlbecker
04:26 PM Revision 2d4efdc3 (cdm-vaadin): ref #7356 moving VaadinServletConfiguration from web.xml into Cdm...
Andreas Kohlbecker
04:25 PM bug #8189 (Resolved): Allow configuration of 'user.home' via the spring environment
close issue if the changes are not causing any problems. Andreas Kohlbecker
12:15 PM bug #8189 (Closed): Allow configuration of 'user.home' via the spring environment
By now it is only possible to configure the `${user.home}` via the system properties. That means the only option to s... Andreas Kohlbecker
03:47 PM Revision 8b5bca23 (taxeditor): ref #8115 Use cached feature tree in factual data view context menu
Patrick Plitzner
03:47 PM Revision 1a4fdfe5 (cdmlib): Remove useless check
Patrick Plitzner
03:47 PM Revision 1ebbb842 (cdmlib): ref #8190 Allow sub term types for FeatureNode relations and trees
Patrick Plitzner
03:03 PM bug #8190 (In Progress): Default FeatureTree throws exception
Patrick Plitzner
01:30 PM bug #8190 (Closed): Default FeatureTree throws exception
When there are Characters and Features in the data base and the default feature tree is created it will fetch all of ... Patrick Plitzner
03:02 PM Revision 1b16a0e4 (taxeditor): ref #8058: add common name language preference - continue
Katja Luther
02:56 PM feature request #8058: Further issues for (local) preferences
the common name language preference is added. Katja Luther
02:46 PM Revision a23c2a31 (cdmlib): ref #8189 moving ConfigFileUtil and AccountStore to cdmlib-persistenc...
Andreas Kohlbecker
02:46 PM Revision 44b37b30 (cdmlib): ref #8189 moving folder funstins from CdmUtils to ConfigFileUtil
Andreas Kohlbecker
02:46 PM Revision 0df7271b (cdmlib): ref #8189 ConfigFileUtil as spring bean in deafult context and tests ...
Andreas Kohlbecker
02:46 PM Revision 110c97a6 (cdmlib): ref #8189 moving method getFolderSeperator() back to CdmUtils
Andreas Kohlbecker
02:46 PM Revision 9b55e525 (cdmlib): ref #8189 CdmUtils uses the spring environment to find user.home
Andreas Kohlbecker
02:46 PM Revision 74547d6a (cdmlib): ref #7356 throwing RuntimeException in case of severe web application...
Andreas Kohlbecker
02:46 PM Revision 28eb7ddd (cdmlib): ref #7356 avoiding spring bean dependency cycle by adding @Lazy
Andreas Kohlbecker
02:46 PM Revision d12f4695 (cdmlib): ref #8188 configurable.xml loads hibernate properties from src/test/r...
Andreas Kohlbecker
02:46 PM Revision cb88358a (cdmlib): ref #7356 upgrading goggle guava to 23.0 to conform to seleninde depe...
Andreas Kohlbecker
02:46 PM Revision 4c54f20c (cdmlib): removing test method
Andreas Kohlbecker
02:43 PM Revision 2de8ed33 (taxeditor): ref #8058: add common name language preference
Katja Luther
02:42 PM Revision d942cf2e (cdmlib): ref #8058: add commonNameLanguage to PreferencePredicate
Katja Luther
01:13 PM Revision 35ff7f48 (cdmlib-apps): db-name change in IAPTActivator
Andreas Kohlbecker
11:43 AM bug #8184: SpecimenTypedesignationEditor: add new specimen broken Chrome browser
Specimen Editor: auch der erste Typus lässt sich nicht speichern (kritisch)
Andreas Kohlbecker
11:34 AM Revision 1b2d19db (cdmlib): ref #6627: add import of taxon interactions to cdmlight - continue
Katja Luther
10:35 AM Revision 1e610f38 (cdmlib): ref #6627: add import of taxon interactions to cdmlight
Katja Luther

03/20/2019

04:58 PM Revision 3c64d726 (taxeditor): Refresh feature and character details view when setting feature su...
Patrick Plitzner
04:45 PM Revision daeb8ba2 (taxeditor): ref #8146 Adapt "add term wizard" to termType restriction
Patrick Plitzner
04:41 PM feature request #7975: Implement a block to display name relations
Validation:
![](picture156-1.png)
Replacement name:
Wie Validation behandeln,
Zudem wird
1. beim Widg...
Andreas Kohlbecker
03:10 PM Revision cab6ecd7 (cdm-vaadin): ref #8188 configurable.xml loads hibernate properties from src/te...
Andreas Kohlbecker
02:54 PM bug #8188 (In Progress): Allow configuring hibernate properties via properties file
Andreas Kohlbecker
02:54 PM bug #8188 (Closed): Allow configuring hibernate properties via properties file
To allow for more flexible configuration of test environments it would be great if the hibernate properties which are... Andreas Kohlbecker
11:14 AM Revision a1095eff (cdmlib): fix regression in fieldUnitDTO with wrong collector+collectionNr
Katja Luther
11:10 AM feature request #8187 (New): Use Spring Environment instead of custom code in AbstractWebApplicat...
the method `AbstractWebApplicationConfigurer.findProperty(String property, boolean required)` implements a similar st... Andreas Kohlbecker
09:56 AM Revision 86f28971 (taxeditor): fix #7428: use eventbus for propagating update information
Katja Luther
08:06 AM Revision 903b5970 (taxeditor): Adapt to model change (set termType in constructor)
Patrick Plitzner
08:01 AM Revision 9b4264ec (cdmlib): Set term type in constructor for term and voc DTO
Patrick Plitzner

03/19/2019

07:31 PM feature request #7975: Implement a block to display name relations
Examples correctly in PhycoBank as use case for output improvement:
Example Validation
https://www.phycobank.org...
Wolf-Henning Kusber
02:30 PM feature request #7428: Open issues for updating open data while subtree is updated
please review.
Bulkeditor and nameeditor are updated.
Katja Luther
02:11 PM Revision 630c2c5d (taxeditor): ref #7428: fix selection for updated titlecache
Katja Luther
01:47 PM Revision a3d5eccd (cdmlib-apps): update to GreeceImageActivator
Andreas Müller
01:47 PM Revision d29ad503 (cdmlib-apps): update mysql driver in commented unitils datasource
Andreas Müller
01:47 PM Revision 5ec402ba (cdmlib-apps): adapt GermanSLImporBase inheritance
Andreas Müller
01:36 PM bug #8115 (Resolved): NPE when moving factual data
this problem is fixed. Katja Luther
01:29 PM bug #4545 (Resolved): Implement TeamOrPersonBaseSelectionDialog
please review.
TeamOrPerson is used for example for TaxonNodeAgentRelations or for authors in references
Katja Luther
01:29 PM Revision b7a38212 (taxeditor): ref #4545: reference author is of type teamOrPerson
Katja Luther
01:27 PM Revision 23d182dd (taxeditor): ref #8115: fix move facts when not persisted facts exist
Katja Luther
01:15 PM Revision 4a8227d3 (cdmlib): ref #4545: add getUuidAndAbbrevTitleCache with class parameter
Katja Luther
12:57 PM Revision dfc1e4fa (cdmlib): ref #4545: add getUuidAndAbbrevTitleCache with class parameter
Katja Luther
12:49 PM feature request #8185 (Feedback): Type layout
Hi Andreas, the same kind of formatting has formerly also been requested by Walter.
I consider this a very good so...
Andreas Kohlbecker
12:29 PM Revision 7bea8087 (taxeditor): ref #4545: add TeamOrPersonSelectionDialog
Katja Luther
09:52 AM feature request #8186 (Duplicate): List view order
ordering by registration numbers is hardly possible, see #7978.
Furthermore is this ticket a duplicate of #8157
Andreas Kohlbecker

03/18/2019

06:02 PM feature request #8186 (Duplicate): List view order
List view in Vaadin should be arranged from new (high registration numbers) to old.
Wolf-Henning Kusber
05:51 PM feature request #8185 (Feedback): Type layout
Type (as is):
Holotype: (BM BM123)
should be:
Holotype: BM (BM123)
see for example: https://www.phycobank...
Wolf-Henning Kusber
05:45 PM bug #8184 (Closed): SpecimenTypedesignationEditor: add new specimen broken Chrome browser
In Vaadin, type specimen editor a new line is created when a typ is selected.
This functions in FireFox. This does n...
Wolf-Henning Kusber
05:16 PM bug #8183 (In Progress): Make Feature IndividualAssociation a generalization of Specimen and Obse...
until now this has been handled in the static method Feature.INDIVIDUALS_ASSOCIATION() which is not the correct place... Andreas Müller
03:55 PM bug #8115 (Feedback): NPE when moving factual data
This setup now works because we have to save before dragging the abstract to the other description
There is howeve...
Patrick Plitzner
02:30 PM Revision 0ac58cd8 (cdmlib): minor
Andreas Müller
02:30 PM Revision 268e5f20 (cdmlib): cleanup
Andreas Müller
02:07 PM task #7515: TypeDesignationStatusComparator to sort by vocabulary first and then by term order
Andreas Kohlbecker wrote:
> The Taxeditor should be more resilient against unusual data.
>
> 1. Suggestion as d...
Katja Luther
01:33 PM feature request #7433: new service method to get specimen by genetic AccessionNumber
this service method is implemented, but controller method is still missing Katja Luther
01:30 PM feature request #8182 (In Progress): show blast search result
the json result of the blast search should be displayed and the accession number needs to be a link to the correspond... Katja Luther
01:20 PM bug #8148 (Resolved): Login Dialog cuts off information
I put it to resolved to remind me reviewing.
Or are there still open issues?
Andreas Müller
01:04 PM bug #8148: Login Dialog cuts off information
I adapted the exception section and I could not reproduce the cutted advanced section (with the actual nightly). Coul... Katja Luther
12:57 PM Revision 8b0c5128 (taxeditor): delete hibernate.cfg.xml
Katja Luther
12:13 PM Revision 53bd0d7f (taxeditor): ref #8178 Adapt to service layer change
Patrick Plitzner
12:10 PM Revision 472739e6 (taxeditor): ref #8178 Auto-create presence-absence character
Patrick Plitzner
12:02 PM Revision 7b1abbc3 (taxeditor): Fix term type check for feature drop adapter
Patrick Plitzner
12:02 PM Revision 65b3a18d (taxeditor): ref #8178 Adapt to service layer change
Patrick Plitzner
11:55 AM feature request #5890 (New): Implement auto-suggest for data portal
Patrick Plitzner
11:07 AM Revision fe4a6e83 (taxeditor): ref #3836: add the modifier vocabulary to the combobox
Katja Luther
09:39 AM Revision 0a9b7662 (cdmlib): ref #8178 Add vocabulary parameter to create child node service method
Patrick Plitzner

03/15/2019

03:30 PM Revision a296b200 (cdmlib): ref #8169 adding missing @Transactional to VersionableServiceBase.isD...
Andreas Kohlbecker
03:29 PM bug #8169: avoid factory.openSession() in DaoBase
VersionableServiceBase.isDeletable misses the @Transactional(readOnly = true) annotation! Andreas Kohlbecker
03:25 PM bug #8169: avoid factory.openSession() in DaoBase
Here is a case found in the server log (occurred 6x in a couple of hours):
~~~
[phycobank] 2019-03-15 10:27:44,...
Andreas Kohlbecker
01:57 PM Revision 4186a152 (cdm-dataportal): ref #7755: filter import sources for occurrences
Katja Luther
01:13 PM Revision a1ce57ce (cdm-dataportal): ref #7755: rename baseURL for occurrences to occurrence/uuid
Katja Luther
12:02 PM Revision abe0b021 (cdm-dataportal): ref #7755: some order issues in specimen detail page
Katja Luther
11:44 AM feature request #8181 (New): Further features for bulk editors
this is a ticket to collect all wanted features for bulkeditors:
Henning:
* further filter options (ref type)
Katja Luther
10:44 AM feature request #7755: Implement advanced detail page for occurrences
mail from AM:
Hallo Katja,
ich bin im Zuge von FoG über die Specimenseite gestolpert. Sehr schön, dass da jetzt...
Katja Luther
09:21 AM feature request #8180 (Closed): Add property term "Presence/Absence" to CDM default terms
When describing a specimen via Characters (almost) all structures may or may not exist. To be able to describe if a s... Patrick Plitzner
08:35 AM Revision ce7faf74 (cdmlib): ref #8162 update to model cache
Patrick Plitzner
08:18 AM Revision 31e57990 (cdmlib-apps): Adapt imports to tem model changes
Patrick Plitzner

03/14/2019

06:26 PM bug #8179 (New): PopupEditorException
Type name editor, PopupEditorException
when saving a name type of a genus
in Workingset
http://api.phycobank.org...
Wolf-Henning Kusber
04:05 PM Revision 63311bd9 (cdm-vaadin): multiple test datasources for tesing multiple test suites
Andreas Kohlbecker
02:48 PM Revision 7dc9bbbb (taxeditor): ref #3836: add modifier to description elements
Katja Luther
02:12 PM feature request #8178 (Rejected): Auto-create absence/presence character for every structure
Presence/Absence Property (PA)
* Jede Strukture muss in Kombination mit PA-Property einen Character bilden.
* Bei...
Patrick Plitzner
02:04 PM feature request #8121 (In Progress): Allow selecting structural/property modifiers when creating ...
Patrick Plitzner
01:56 PM feature request #6849 (In Progress): [DISCUSS] How to handle "kind of" term creation in TermEditor
Patrick Plitzner
01:37 PM Revision d9f54449 (taxeditor): ref #7428: updateEditors method in AbstractUtility class
Katja Luther
01:07 PM Revision 46567e3a (cdmlib): ref #6413 Throw exception for more than 1 or 0 FieldUnits
Patrick Plitzner
01:05 PM Revision 28716614 (cdmlib): Adapt test to change in clone() method
Patrick Plitzner
12:16 PM Revision f9fbd38a (taxeditor): ref #6413 i18n
Patrick Plitzner
12:11 PM feature request #6413 (Resolved): [DISCUSS] How to create type duplicates (e.g. isotypes) for a t...
The first implementation allows selection one of the already existing specimen type designation for creating the dupl... Patrick Plitzner
12:07 PM Revision d436d97b (taxeditor): code cleanup
Patrick Plitzner
12:00 PM Revision 80a540f2 (taxeditor): ref #6413 Implement type duplication in type detail section
Patrick Plitzner
12:00 PM Revision 899a348b (taxeditor): Fix copy&paste error
Patrick Plitzner
12:00 PM Revision 0661b3e6 (taxeditor): ref #6413 Add "Clone Type Duplicate" option to name details view
Patrick Plitzner
12:00 PM Revision 18a3973f (taxeditor): ref #6413 Disable non-editable text fields
Patrick Plitzner
12:00 PM Revision 56b642e9 (cdmlib): Fix clone() method of SpecimenOrObservationBase
Patrick Plitzner
12:00 PM Revision 99366401 (cdmlib): ref #6413 Add service method for duplicating type specimen
Patrick Plitzner

03/13/2019

04:00 PM Revision 123796a3 (taxeditor): ref #7428: move updateViews into AbstractUtility
Katja Luther
12:52 PM feature request #8175: add name facts to cdm light export
the name facts are moved to their own table. Katja Luther
12:51 PM Revision 24b61cf8 (cdmlib): ref #8175: name facts in a separate table
Katja Luther
12:30 PM Revision a3c9dcce (cdm-server): cdmlib-developer.log to be ignored by git
Andreas Kohlbecker
12:29 PM Revision 14a235fc (cdm-server): ref #8173 setting spring.profiles.active in the cdm-sever bootloa...
Andreas Kohlbecker
12:17 PM Revision 42b67a16 (cdmlib): Revert "ref #8173 removing 'remoting' profile activation from ide lau...
This reverts commit 027eaf7c3181f62d725e7b5a677284f07cd5b43b. Andreas Kohlbecker
12:16 PM Revision dd0d18ea (cdmlib): Revert "ref #8173 activation of profile remoting in the web.xml"
This reverts commit f2d3f4d37174244ca577203d1228256c6f787a29. Andreas Kohlbecker
10:46 AM Revision 2c44794f (taxeditor): minor
Katja Luther
09:57 AM feature request #7428 (Resolved): Open issues for updating open data while subtree is updated
Applied in changeset commit:taxeditor|4fff2d21dfed4ae1ba6c5106e7d59cdf2e82548c. Katja Luther
09:56 AM Revision 4fff2d21 (taxeditor): fix #7428: ask for saving and update open views for subtree operat...
Katja Luther
09:36 AM bug #8176 (Resolved): WeaklyRelatedEntityCombobox is slow
test TaxonNamePopupEditor Genus field, replaced Synonym and Basionym also some ToManyRelatedEntitiesComboboxes and T... Andreas Kohlbecker
09:31 AM Revision aec76ebb (cdm-vaadin): ref #8176 removing workaround with bad performance which was need...
Andreas Kohlbecker
09:02 AM Revision eb8d2f54 (cdm-vaadin): ref #8176 bugfix in TaxonNameStringFilterablePagingProvider.idFor()
Andreas Kohlbecker

03/12/2019

05:57 PM bug #8176 (In Progress): WeaklyRelatedEntityCombobox is slow
Andreas Kohlbecker
02:15 PM bug #8176 (Closed): WeaklyRelatedEntityCombobox is slow
## on setting values
The WeaklyRelatedEntityCombobox needs to check if the value to set is at all contained in the...
Andreas Kohlbecker
05:57 PM Revision af0633ea (cdm-vaadin): ref #8176 WeaklyRelatedEntityCombobox solving minor performance o...
Andreas Kohlbecker
03:48 PM Revision f2d3f4d3 (cdmlib): ref #8173 activation of profile remoting in the web.xml
Andreas Kohlbecker
02:22 PM feature request #8177 (New): Discuss: Mother of a type specimen
How to store? Wolf-Henning Kusber
01:07 PM bug #6627: Remaining cdm light issues
the name facts are implemented now, see #8175 Katja Luther
01:06 PM feature request #8175: add name facts to cdm light export
please review Katja Luther
01:06 PM feature request #8175 (Resolved): add name facts to cdm light export
Applied in changeset commit:cdmlib|852a1a9e5171370a8e3e6962b21837e38115cf9a. Katja Luther
01:04 PM feature request #8175 (Closed): add name facts to cdm light export
We decided to keep the name facts in cdm, so the name facts should be exported as well Katja Luther
01:06 PM Revision 852a1a9e (cdmlib): fix #8175: name facts should be exported by cdm light export
Katja Luther
12:53 PM bug #8099: Error saving name type designation editor due to problem in poupeditor context
can not reproduce Andreas Kohlbecker
12:52 PM Revision 98db0610 (cdm-vaadin): ref #8132 fixin bug related to transaction rollback in CdmStore
Andreas Kohlbecker
12:03 PM bug #8111: User selection dialog for groups does not filter out existing users
please review Katja Luther
12:02 PM bug #8111 (Resolved): User selection dialog for groups does not filter out existing users
Applied in changeset commit:taxeditor|cbc83794de4303c54b45309ff151c70627e82e1a. Katja Luther
12:02 PM Revision cbc83794 (taxeditor): fix #8111: filter existing users/groups for member/group selection
Katja Luther
11:34 AM bug #8115: NPE when moving factual data
please review Katja Luther
11:33 AM bug #8115: NPE when moving factual data
the problem was the not persisted description, therefore the description needs to be passed to the service method. To... Katja Luther
11:26 AM bug #8115 (Resolved): NPE when moving factual data
Applied in changeset commit:taxeditor|803af83ee2911d193d6a95a3f73dee727ae77d45. Katja Luther
11:23 AM Revision b5a42086 (cdmlib): ref #8115: fix move elements for not persisted target description
Katja Luther
11:23 AM Revision 803af83e (taxeditor): fix #8115: fix move elements to not persisted target description
Katja Luther
10:14 AM Revision 408fe3ed (cdm-vaadin): avoiding LazyInitialitationException
Andreas Kohlbecker
09:31 AM feature request #8136: Implement sources for type designations in TaxEditor
please review Katja Luther
09:30 AM feature request #8136 (Resolved): Implement sources for type designations in TaxEditor
Applied in changeset commit:taxeditor|9f40979f5e0d2fc55100acc5a7fabac00d48ce12. Katja Luther
09:30 AM Revision 9f40979f (taxeditor): fix #8136: update type section when changing type to or from lecto...
Katja Luther
09:09 AM Revision 8f2aad1d (cdm-server): ref #8173 removing 'remoting' profile activation from ide launchers
Andreas Kohlbecker
09:09 AM Revision 027eaf7c (cdmlib): ref #8173 removing 'remoting' profile activation from ide launchers
Andreas Kohlbecker
08:53 AM Revision df841466 (cdm-server): notes on commented settings regarding debugging of leaky db conne...
Andreas Kohlbecker
08:36 AM bug #8105: better hotfix branch stragey in git flow to avoid commits in master which are missing ...
I did a brief research on the topic of hotfix branches:
1. git flow has the concept of *support branches* by which...
Andreas Kohlbecker
08:11 AM task #8130: Check if related feature data is cleared when supported facts type is changed
For nomenclatural code there is a method checkForDeletableParts() where the deletable parts set to null.
But for ...
Katja Luther

03/11/2019

06:10 PM Revision 5261131c (cdm-vaadin): ref #8132 proper transaction rollback in CdmStore - copied from h...
Andreas Kohlbecker
05:18 PM Revision 41cb64c2 (cdm-server): Merge branch 'hotfix/5.5.3'
jenkins
05:18 PM Revision 3a3734fc (cdm-server): jenkins: setting project version to 5.5.3
jenkins
05:14 PM Revision 4b98496f (cdm-webapp): Merge branch 'hotfix/5.5.3'
jenkins
05:14 PM Revision ecfdfc7e (cdm-webapp): jenkins: setting project version to 5.5.3
jenkins
05:07 PM Revision 43faffd3 (cdm-vaadin): Merge branch 'hotfix/5.5.3'
jenkins
05:07 PM Revision 4ee41e42 (cdm-vaadin): jenkins: setting project version to 5.5.3
jenkins
05:05 PM Revision 761ee155 (cdm-server): jenkins bumping cdm-webapp.version to 5.5.3
jenkins
05:04 PM Revision 5d752aea (cdm-server): updating poms for 5.5.3 branch with snapshot versions
jenkins
02:47 PM Revision 23459bd5 (cdmlib): Merge branch 'hotfix/5.5.2'
jenkins
02:47 PM Revision e4b983ac (cdmlib): jenkins: setting project version to 5.5.2
jenkins
02:33 PM bug #8174: First test fails if term data is in loaded DataSet
This is the order how events are handled in unitils:
* [Unitils] beforeTestClass - TestClass1
* [Test] testBefore...
Andreas Müller
02:30 PM bug #8174 (New): First test fails if term data is in loaded DataSet
This is because the unitils/dbunit JpaModul starts the application context only during
~~~ java
beforeTestMethod...
Andreas Müller
02:32 PM Revision c766108e (cdm-webapp): jenkins bumping cdmlib.version to 5.5.2 cdm.vaadin.version to 5.5.3
jenkins
02:32 PM Revision 98dbaebe (cdm-webapp): updating poms for 5.5.3 branch with snapshot versions
jenkins
02:23 PM Revision d201d8e5 (cdm-vaadin): Merge branch 'hotfix/5.5.3' into develop
Andreas Kohlbecker
02:18 PM Revision e98e8737 (cdm-vaadin): Revert "ref #8132 proper transaction rollback in CdmStore" which ...
This reverts commit 278e8f9600956b6e8205337045815a153f0a05ac. Andreas Kohlbecker
02:16 PM Revision 278e8f96 (cdm-vaadin): ref #8132 proper transaction rollback in CdmStore
merging Conflicts in src/main/java/eu/etaxonomy/cdm/service/CdmStore.java Andreas Kohlbecker
02:01 PM Revision 9f8b217c (cdm-vaadin): adding c3p0.properties to gitignore
Andreas Kohlbecker
02:01 PM Revision 23025c30 (cdm-vaadin): ref #8132 proper transaction rollback in RegistrationWorkingsetPr...
Andreas Kohlbecker
01:53 PM bug #8170: javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource does not c...
I Opened the issue #8171 only for fixing the most severe problem quickly by storing the new connection in the cache f... Andreas Kohlbecker
01:41 PM bug #8170 (Feedback): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource...
Is this still an open issue after #8171 is solved now.
I also do not fully understand the solution. In #8171 you s...
Andreas Müller
01:41 PM bug #8149: ReferenceEditor: filter inReferences ONLY by applicable reference type suppess Generic...
Related problem:
if e.g. "Phytotaxa" is tiped into the dopdown menue field, "Phytotaxa" is not selected, I have to s...
Wolf-Henning Kusber
01:10 PM feature request #6413 (In Progress): [DISCUSS] How to create type duplicates (e.g. isotypes) for ...
Patrick Plitzner
12:59 PM feature request #8173 (In Progress): spring profile remoting enabled by default
Andreas Kohlbecker
12:55 PM feature request #8173 (Resolved): spring profile remoting enabled by default
Applied in changeset commit:cdmlib|5ab0f6455f6cb83bfba0bb5ad6aee6e210d8dd14. Andreas Kohlbecker
12:48 PM feature request #8173 (In Progress): spring profile remoting enabled by default
Andreas Kohlbecker
12:40 PM feature request #8173 (Closed): spring profile remoting enabled by default
the spring profile still needs to be enabled by passing `-Dspring.profiles.active=remoting` to cdm-remote instances.... Andreas Kohlbecker
12:57 PM feature request #8096 (Resolved): Implement CacheUpdater as long running task with correct progre...
please review Katja Luther
12:55 PM Revision 4478751c (taxeditor): ref #8096: set correct task name in progress monitor manager
Katja Luther
12:55 PM Revision 5ab0f645 (cdmlib): fix #8173 spring profile 'remoting' activated by default
Andreas Kohlbecker
12:55 PM Revision 7d340a47 (cdmlib): fix #8171 internally caching new connection in WrappedCdmDataSource t...
Andreas Kohlbecker
12:55 PM Revision 80595b0d (cdmlib): ref #7106 proper transaction management in turn of solving the proble...
Andreas Kohlbecker
12:55 PM Revision 8db30ca4 (cdmlib): log level for cdm caches to WARN to avoid constant noise from the Tra...
Andreas Kohlbecker
12:54 PM bug #8171 (Resolved): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSourc...
Applied in changeset commit:cdmlib|ddaf22cfc36cad56b677c8fecd8eb3e83db5cefb. Andreas Kohlbecker
12:53 PM Revision 99583d95 (cdm-vaadin): ref #8132 proper transaction rollback in CdmStore
Andreas Kohlbecker
12:13 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on ...
fixed a small bug in updateCaches of Team.java which results in the result was always true. commit:cdmlib|694f0ef28f3... Katja Luther
12:12 PM Revision 694f0ef2 (cdmlib): fix #7874: updateCaches always returns true
Katja Luther
11:50 AM Revision 6f71379a (cdm-vaadin): ref #8132 proper transaction rollback in RegistrationWorkingsetPr...
Andreas Kohlbecker
08:18 AM Revision 04819529 (cdm-vaadin): adding c3p0.properties to gitignore
Andreas Kohlbecker
08:18 AM Revision 8c1dd527 (cdm-vaadin): setting cdmlib version to 5.5.2-SNAPSHOT
Andreas Kohlbecker

03/08/2019

07:17 PM feature request #8172 (New): Discuss: Cite an image of the holotype
Probem: in Micoalgae, a type specimen can be designated, but nobody knows how the taxon looks like. E.g. Two differen... Wolf-Henning Kusber
05:28 PM Revision e22b441a (cdmlib): log level for cdm caches to WARN to avoid constant noise from the Tra...
Andreas Kohlbecker
05:27 PM Revision ddaf22cf (cdmlib): fix #8171 internally caching new connection in WrappedCdmDataSource t...
Andreas Kohlbecker
05:25 PM Revision eb370441 (cdmlib): updating poms for 5.5.2 branch with snapshot versions
jenkins
05:17 PM bug #8132: phycobank cdm-server instance problems with db connections
Another situation in which a connection is being opened but not properly closed is occurring in the `DataSourceConfig... Andreas Kohlbecker
02:02 PM bug #8132: phycobank cdm-server instance problems with db connections
debugging the cdm-server to find connections that have been opened but which are not being closed properly (DebugC3P0... Andreas Kohlbecker
05:06 PM bug #8171 (Closed): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource ...
When the existing cached connection in the WrappedCdmDataSource is null a new connection will be created but is not s... Andreas Kohlbecker
04:59 PM bug #8170 (Feedback): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource...
the documentation of `javax.sql.DataSource.getConnection()` reads like *"**Attempts to establish** a connection with ... Andreas Kohlbecker
02:26 PM Revision 5479cc9a (cdm-vaadin): ref #8132 fixing problem of uncommited transaction in Registratio...
Andreas Kohlbecker
02:24 PM Revision 06cc1a39 (cdm-vaadin): updating poms for 5.5.3 branch with snapshot versions
jenkins
02:21 PM Revision d2accd99 (cdm-vaadin): ref #8132 fixing problem of uncommited transaction in Registratio...
Andreas Kohlbecker

03/07/2019

04:58 PM Revision 998a72e0 (cdm-vaadin): ref #7106 refactoring CdmStore in turn of changed CdmRepository.g...
- CdmStore as Spring bean
- CdmStore managed transactions and sessions properly
Andreas Kohlbecker
03:26 PM bug #8169 (New): avoid factory.openSession() in DaoBase

In DaoBase using `factory.openSession()` is plain wrong, the HibernateTransactionManger should be used instead.
Andreas Kohlbecker
03:24 PM bug #7106 (In Progress): avoid factory.openSession() in CdmRepository
Andreas Kohlbecker
02:17 PM bug #7106: avoid factory.openSession() in CdmRepository
since February 25th there are only occurrences related to this issue in the log which affected the phycobank code.
W...
Andreas Kohlbecker
07:25 AM bug #7106: avoid factory.openSession() in CdmRepository
with the logging of the stacktrace it now becomes clear where the unmanaged sessions are being created:
~~~~
java...
Andreas Kohlbecker
02:57 PM Revision b7647a99 (cdm-vaadin): ref #7106 using new CdmRepository.clearSession() method
Andreas Kohlbecker
02:54 PM Revision 6d6ae033 (cdmlib): ref #7106 logging unintentially creation of unmanaged new session in ...
Andreas Kohlbecker
02:54 PM Revision ff628107 (cdmlib): ref #7106 throwing Exception instead of unintentially creating unmana...
Andreas Kohlbecker
12:37 PM bug #8132: phycobank cdm-server instance problems with db connections
The problem just occurred again. This time no one was using the Taxeditor since the instance has been started.
The...
Andreas Kohlbecker
12:03 PM Revision 93fb962c (cdm-dataportal): fix specimen details page -continue
Katja Luther
11:21 AM task #8168 (New): Check if withdrawing of per entity permission is working correctly for inRefere...
Andreas Kohlbecker
11:17 AM bug #8167 (New): Permission denied for Submitter when adding section to newly created journal

~~~
[phycobank] 2019-03-07 09:56:41,648 ERROR [qtp1510067370-69] [org.hibernate.internal.SessionImpl] - HHH000346:...
Andreas Kohlbecker
11:15 AM Revision 9214096f (cdm-dataportal): revert last changes
Katja Luther
10:12 AM Revision d2deb7ca (cdmlib): ref #8096: use subprogressmonitor for cache updater
Katja Luther
09:39 AM task #8118: Update MySQL drivers
Andreas Müller wrote:
> Some solution is setting on command line e.g. for Central European time (CET):
>
> mysql>...
Katja Luther
09:25 AM Revision ade2b1f0 (cdm-dataportal): fix css for specimens
Katja Luther
08:33 AM Revision 000aa820 (taxeditor): removed cdm.map.ser from taxeditor.cdmlib resources (cont.)
Andreas Müller

03/06/2019

09:30 PM Revision 8f43de05 (taxeditor): removed cdm.map.ser from taxeditor.cdmlib resources
Andreas Müller
08:57 PM task #8118: Update MySQL drivers
Some solution is setting on command line e.g. for Central European time (CET):
mysql> SET GLOBAL time_zone = '+1:0...
Andreas Müller
08:19 PM task #8118: Update MySQL drivers
Katja, I think you also had the problem localy. What did you do to fix it? Andreas Müller
08:11 PM task #8118: Update MySQL drivers
This is what I currently get when connecting to MySQL on PESIHPC:
~~~
Caused by: com.mysql.cj.exceptions.InvalidC...
Andreas Müller
08:06 PM task #8118: Update MySQL drivers
https://stackoverflow.com/questions/26515700/mysql-jdbc-driver-5-1-33-time-zone-issue Andreas Müller
06:20 PM Revision 3cee4d12 (cdm-server): ref #7729 suppress nasty ehcache OutOfMemory warnings to reduce c...
Andreas Kohlbecker
06:07 PM Revision d75c4b91 (cdm-server): ref #8132 c3p0 settings for debugging lost jdbc connections
Andreas Kohlbecker
05:43 PM Revision 568fb7dc (cdmlib): ref #7106 logging stacktrace with 'Opening new session in turn of a H...
Andreas Kohlbecker
05:24 PM Revision 8d98b642 (cdmlib-apps): E+M specific book recognition?
Andreas Müller
05:20 PM Revision 9945900a (cdmlib-apps): minor
Andreas Müller
05:00 PM bug #7106: avoid factory.openSession() in CdmRepository
In a locally running cdmserver started vi the eclipse launcher *cdm-server - start from war* multiple occurrences can... Andreas Kohlbecker
03:36 PM Revision 74b0ae76 (cdmlib): minor
Andreas Müller
03:34 PM Revision a4649a49 (cdmlib): cleanup
Andreas Müller
03:04 PM Revision 5e339d32 (taxeditor): ref #8044 Add "Move to..." menu to term editor
Patrick Plitzner
02:54 PM Revision b8f1dbe7 (cdmlib): Fix default term move position
Patrick Plitzner
02:53 PM Revision 489f7610 (cdm-dataportal): add class specimen to page to avoid bullets for item list
Katja Luther
02:25 PM Revision 7c9e8720 (taxeditor): ref #8162 move ISourceable to reference package in TaxEditor
Andreas Müller
02:23 PM Revision c5a114a8 (cdm-dataportal): ref #8166 adapting to change in FeatureNode property 'feature...
Andreas Kohlbecker
02:12 PM Revision 19ff6869 (taxeditor): ref #8162 move FeatureTree and FeatureNode to new term package in ...
Andreas Müller
02:05 PM Revision 7994816f (cdmlib): set FeatureTest preliminary to ignore
Andreas Müller
01:57 PM Revision b011743c (cdm-dataportal): ref #8166 adapting to change in FeatureNode property 'feature...
Andreas Kohlbecker
01:56 PM task #8166 (Closed): Adapt dataportal to term structure changes
the dataportal needs to be adapted to the changes applied in the context of #6794 Andreas Kohlbecker
01:24 PM Revision 9ab4e3ab (cdmlib-apps): ref #8162 move FeatureTree and FeatureNode to term package in cd...
Andreas Müller
01:22 PM Revision de81ab2a (cdmlib-apps): ref #8162 move OriginalSourceXXX to reference package in cdmlib-app
Andreas Müller
01:16 PM Revision b6b3cb35 (cdmlib): ref #8162 move FeatureTree and FeatureNode to term package
Andreas Müller
01:05 PM task #8162: Move term related classes from model.common to model.term
Andreas Müller wrote:
> Other classes to move: Sources und IntextReferences, Rights, IReferencedEntity, ReferencedE...
Andreas Müller
01:03 PM task #8162: Move term related classes from model.common to model.term
Also move FeatureNode and FeatureTree to new term package as they become TermTreeNode and TermTree Andreas Müller
01:02 PM Revision 6ed7a1a7 (taxeditor): ref #8162 move OriginalSourceXXX to reference package
Andreas Müller
12:57 PM Revision 334731bb (cdmlib): ref #8162 missing adaption for moving of OriginalSourceBase
Andreas Müller
12:30 PM Revision 17ff12b9 (cdm-dataportal): Merge tag '5.5.1' into develop
tagging hotfix release 5.5.1 Andreas Kohlbecker
12:30 PM Revision 43bc8f03 (cdm-dataportal): Merge branch 'hotfix/5.5.1'
Andreas Kohlbecker
10:49 AM task #8130: Check if related feature data is cleared when supported facts type is changed
Katja, could you please check how we do these "model validations" in terms of e.g. nomenclatural code changes in Taxo... Andreas Müller
10:14 AM task #8130 (Feedback): Check if related feature data is cleared when supported facts type is changed
Andreas Müller wrote:
> We may want to implement hard or soft validation for this. Maybe also an update script to re...
Patrick Plitzner
10:07 AM task #8130 (In Progress): Check if related feature data is cleared when supported facts type is c...
Patrick Plitzner
10:44 AM feature request #8165 (New): enable log4j jmx for cdm-server
having the log4j jmx beans enabled would be a great help during debugging of the production server and other systems
...
Andreas Kohlbecker
10:23 AM bug #5632: ClassNotFoundException for org.eclipse.jetty.servlet.listener.ELContextCleaner during ...
Moving the ticket back to decide what we want to do with it Patrick Plitzner
10:19 AM bug #5632: ClassNotFoundException for org.eclipse.jetty.servlet.listener.ELContextCleaner during ...
This exception is still thrown when the test is run.
This is the log of the last jenkins run: http://int.e-taxonom...
Patrick Plitzner
10:21 AM Revision 9fc5c5ca (taxeditor): ref #5632 Disable CdmServer test
Patrick Plitzner
09:59 AM Revision b668f047 (taxeditor): ref #5632 Re-enable CdmServer test
Patrick Plitzner
08:51 AM bug #8164 (New): ClassNotFoundException during deserialization for Reference
Andreas K.: "Ich habe in dem Produktions-Server-Log seit Oktober 10x
`org.springframework.web.util.NestedServletEx...
Patrick Plitzner

03/05/2019

12:35 AM Revision 113347bb (cdmlib): ref #8162 move OriginalSourceXXX to reference package
Andreas Müller
12:30 AM Revision bd491943 (cdmlib): ref #8162 move OriginalSourceXXX to reference package
Andreas Müller
05:42 PM Revision 78a42a9b (cdm-dataportal): fix specimen details from compressed table
Katja Luther
05:39 PM task #8162: Move term related classes from model.common to model.term
Andreas Müller wrote:
> we should also adapt persistence layer
done
Andreas Müller
12:43 PM task #8162 (Resolved): Move term related classes from model.common to model.term
Applied in changeset commit:taxeditor|974d02d015234ec80816dfb47eaabde6688c2fa9. Andreas Müller
12:24 PM task #8162 (In Progress): Move term related classes from model.common to model.term
Andreas Müller
12:23 PM task #8162: Move term related classes from model.common to model.term
we should also adapt persistence layer Andreas Müller
12:12 PM task #8162 (Resolved): Move term related classes from model.common to model.term
Applied in changeset commit:taxeditor|b9dc6bb1d38897b06888836dd74d48684f73c5d5. Andreas Müller
10:52 AM task #8162: Move term related classes from model.common to model.term
Other classes to move: Sources und IntextReferences, Rights, IReferencedEntity, ReferencedEntityBase, Language? Andreas Müller
05:37 PM Revision 0698c0be (taxeditor): ref #8162 export persistence.dao.(hibernate.)term
Andreas Müller
05:34 PM Revision 76cfd0f6 (cdmlib): ref #8162 move term related classes from persistence(.dao.)common to ...
Andreas Müller
05:22 PM bug #8132: phycobank cdm-server instance problems with db connections
Results from the server log:
The problem occurred again. The jdbc connection which was being used by the tread `qt...
Andreas Kohlbecker
05:13 PM Revision d91361a3 (taxeditor): minor
Katja Luther
04:58 PM Revision 89c64d84 (cdm-server): Merge branch 'hotfix/5.5.2'
jenkins
04:55 PM Revision 30fc7ac4 (cdmlib): ref #6794 adapt FeatureTreeController property path to new FeatureNod...
Andreas Müller
04:51 PM Revision e69e90b6 (taxeditor): Remove hard coded port for localhost in login dialog
Patrick Plitzner
04:51 PM Revision 99f7ead3 (cdm-server): fixing project versions
jenkins
04:39 PM Revision 6767f1b1 (cdm-server): jenkins bumping cdm-webapp.version to 5.5.2
jenkins
04:39 PM Revision f6563017 (cdm-server): updating poms for 5.5.2 branch with snapshot versions
jenkins
04:25 PM Revision 94f804c7 (cdmlib-apps): fix merge issue in PlantGlossaryCsvImportState
Andreas Müller
04:19 PM Revision eedc312f (taxeditor): fix #8162 add eu.etaxonomy.cdm.model.term.init to exported packages
Andreas Müller
04:15 PM Revision 79f8e358 (cdm-webapp): jenkins: setting project version to 5.5.2
jenkins
04:15 PM Revision 6d6e8fae (cdm-webapp): Merge branch 'hotfix/5.5.2'
jenkins
04:13 PM Revision a74e0d05 (cdm-vaadin): jenkins: setting project version to 5.5.2
jenkins
04:13 PM Revision 9cd3787a (cdm-vaadin): Merge branch 'hotfix/5.5.2'
jenkins
04:09 PM Revision e29a4a6e (cdm-server): loggin: eu.etaxonomy.cdm.cache.CdmTransientEntityCacher on level ...
Andreas Kohlbecker
04:07 PM Revision c140ae29 (cdm-webapp): jenkins bumping cdm.vaadin.version to 5.5.2
jenkins
04:07 PM Revision 850c2918 (cdm-webapp): updating poms for 5.5.2 branch with snapshot versions
jenkins
04:05 PM Revision 5976b46d (cdm-vaadin): Merge branch 'hotfix/5.5.2' into develop
Andreas Kohlbecker
03:49 PM Revision 09c85ccb (cdm-vaadin): ref #8160 CdmBeanItemContainerFactory @Transactional only where n...
Andreas Kohlbecker
02:58 PM bug #8107 (Closed): NPE when throwing PopupEditorException in AbstractPopupEditor
issue is not reproducible - closing. Andreas Kohlbecker
02:41 PM Revision 66172879 (cdmlib): ref #8096: termservice adapted
Katja Luther
02:26 PM Revision 0da5fc18 (cdmlib): ref #8096: delete old cache updater and adapt cache updater to moved ...
Katja Luther
01:59 PM Revision 95371079 (cdmlib): ref #8096: move cache updater and service methods return updateResult...
Katja Luther
01:58 PM Revision 112ab4f7 (cdmlib): ref #8096: move cache updater and service methods return updateResult
Katja Luther
01:39 PM Revision a2452e25 (taxeditor): minor
Katja Luther
01:38 PM Revision c01a0dfe (taxeditor): ref #8096: restructure repair menu and use longrunningTaskService ...
Katja Luther
12:43 PM Revision 974d02d0 (taxeditor): fix #8162 add eu.etaxonomy.cdm.model.term to exported packages
Andreas Müller
12:17 PM Revision ad29970c (cdmlib-apps): fix #8162 adapt PlantGlossaryCategoryAsPropertiesImport to new t...
Andreas Müller
12:12 PM Revision b9dc6bb1 (taxeditor): fix #8162 adapt terms to new package structure in TaxEditor
Andreas Müller
11:49 AM feature request #8163 (New): RegistrationService.setStatus() method implemented
This method need to be used by the RegistrationWorkingsetPresenter.saveRegistrationStatusChange() method in cdm-vaadi... Andreas Kohlbecker
11:49 AM Revision c715029f (cdmlib-apps): Merge branch 'master' into feature8162
Conflicts:
app-import/src/main/java/eu/etaxonomy/cdm/io/plantglossary/PlantGlossaryCsvImportState.java
Andreas Müller
11:33 AM Revision abfdb8f6 (cdmlib): ref #8162 update to model cache
Andreas Müller
11:33 AM Revision 58e2f57e (cdmlib): ref #8162 updates to test data in further metadata
Andreas Müller
11:33 AM Revision a4ae2ca1 (cdmlib): ref #8162 updates to hibernate.cfg.xml
Andreas Müller
11:33 AM Revision 482ed9fb (cdmlib): minor changes in CdmModelCacher
Andreas Müller
11:33 AM Revision 1c39686b (cdmlib): ref #8162 adapt cdmlip to new term package structure
Andreas Müller
11:21 AM bug #8161 (Rejected): *FilterablePagingProvider classes as transactional readonly spring beans
the *FilterablePagingProviders only are using service methods which are anyway annotated with `@Transactional(readOnl... Andreas Kohlbecker
11:21 AM bug #7945 (Rejected): TaxonNamePopupEditor: missing genus causes exception when updating name par...
the *FilterablePagingProviders only are using service methods which are anyway annotated with `@Transactional(readOnl... Andreas Kohlbecker
11:14 AM bug #8075 (In Progress): multiple cascase all-delete-orphan exceptions related to DefinedTermBase...
Andreas Kohlbecker
10:55 AM bug #8158: cascade="all-delete-orphan" problem when ....
potentially duplicate of #8160 Andreas Kohlbecker
10:51 AM Revision c8236d99 (taxeditor): minor
Andreas Müller

03/04/2019

12:19 AM Revision 7ae0512d (cdmlib-apps): ref #8162 adapt cdmlip-app to new term package structure
Andreas Müller
 

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