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feature request #8182

show blast search result

Added by Katja Luther about 1 year ago. Updated 8 months ago.

Status:
In Progress
Priority:
Highest
Assignee:
Category:
cdm-dataportal
Target version:
Start date:
03/18/2019
Due date:
% Done:

0%

Severity:
normal
Tags:

Description

the json result of the blast search should be displayed and the accession number needs to be a link to the corresponding specimen.

The search result should be displayed as a table with title of the result, genetic accession number, % coverage, length (t.b.c.)

  • the name should be shortened because sometimes it is too long (for example show the first 10 characters)

  • more details could be displayed in a details field.

Clicking on the genetic accession number should open a view with the hierarchy of the derived unit of the sequence (like the tree entry in specimen view)


Related issues

Related to Edit - feature request #7433: new service method to get specimen by genetic AccessionNumber Resolved 05/23/2018

Associated revisions

Revision 6eaec849 (diff)
Added by Katja Luther 11 months ago

implement blast search table for the result

Revision 2f30124c (diff)
Added by Andreas Kohlbecker 11 months ago

ref #8182 sloving problems with blast search menu items and renaming constants

Revision 868be375 (diff)
Added by Katja Luther 11 months ago

remove blast tab if blast is not enabled

Revision 6f6f79f6 (diff)
Added by Katja Luther 10 months ago

ref #8182: fix error ín cdm_dataportal_preprocess_menu_local_tasks()

Revision 442916a4 (diff)
Added by Katja Luther 10 months ago

ref #8182: adapt occurrence DTOs to use them in details page of blast result

Revision 72d57201 (diff)
Added by Katja Luther 10 months ago

ref #8182: specimen tree is collapsable, blast result table with clickable details

Revision 4c812e71 (diff)
Added by Katja Luther 9 months ago

ref #8182: remove local server for blast ws and add collabsible rows in specimen table and blast result table

Revision b3e21c63 (diff)
Added by Katja Luther 9 months ago

ref #8182: handle not existing dna for accession number

Revision ce347d23 (diff)
Added by Katja Luther 9 months ago

ref #8182: add link to ncbi for blast result

Revision 1ee58da8 (diff)
Added by Katja Luther 9 months ago

ref #8182: add header to failed response

Revision d2be662d (diff)
Added by Katja Luther 9 months ago

ref #8182: accession number is required in webservice

Revision 430b5a6c (diff)
Added by Katja Luther 9 months ago

ref #8182: minor

Revision f60b52c4 (diff)
Added by Katja Luther 9 months ago

ref #8182: Dna should be DNA

Revision ff454f55 (diff)
Added by Katja Luther 9 months ago

ref #8182: use bgbm-import instead of ip address

History

#1 Updated by Katja Luther about 1 year ago

#2 Updated by Katja Luther 11 months ago

  • Status changed from New to In Progress
  • Target version changed from Release 5.7 to Release 5.8

#3 Updated by Andreas Müller 9 months ago

is this ready or should we create ticket for open issues?

#4 Updated by Katja Luther 8 months ago

  • Description updated (diff)

#5 Updated by Katja Luther 8 months ago

  • Description updated (diff)

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