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feature request #8182

show blast search result

Added by Katja Luther almost 2 years ago. Updated 5 days ago.

Status:
In Progress
Priority:
Highest
Assignee:
Category:
cdm-dataportal
Target version:
Start date:
03/18/2019
Due date:
% Done:

0%

Severity:
normal
Tags:

Description

the json result of the blast search should be displayed and the accession number needs to be a link to the corresponding specimen.

The search result should be displayed as a table with title of the result, genetic accession number, % coverage, length (t.b.c.)

  • the name should be shortened because sometimes it is too long (for example show the first 10 characters)

  • more details could be displayed in a details field.

Clicking on the genetic accession number should open a view with the hierarchy of the derived unit of the sequence (like the tree entry in specimen view)


Related issues

Related to Edit - feature request #7433: new service method to get specimen by genetic AccessionNumber Resolved 05/23/2018

Associated revisions

Revision 6eaec849 (diff)
Added by Katja Luther over 1 year ago

implement blast search table for the result

Revision 2f30124c (diff)
Added by Andreas Kohlbecker over 1 year ago

ref #8182 sloving problems with blast search menu items and renaming constants

Revision 868be375 (diff)
Added by Katja Luther over 1 year ago

remove blast tab if blast is not enabled

Revision 6f6f79f6 (diff)
Added by Katja Luther over 1 year ago

ref #8182: fix error ín cdm_dataportal_preprocess_menu_local_tasks()

Revision 442916a4 (diff)
Added by Katja Luther over 1 year ago

ref #8182: adapt occurrence DTOs to use them in details page of blast result

Revision 72d57201 (diff)
Added by Katja Luther over 1 year ago

ref #8182: specimen tree is collapsable, blast result table with clickable details

Revision 4c812e71 (diff)
Added by Katja Luther over 1 year ago

ref #8182: remove local server for blast ws and add collabsible rows in specimen table and blast result table

Revision b3e21c63 (diff)
Added by Katja Luther over 1 year ago

ref #8182: handle not existing dna for accession number

Revision ce347d23 (diff)
Added by Katja Luther over 1 year ago

ref #8182: add link to ncbi for blast result

Revision 1ee58da8 (diff)
Added by Katja Luther over 1 year ago

ref #8182: add header to failed response

Revision d2be662d (diff)
Added by Katja Luther over 1 year ago

ref #8182: accession number is required in webservice

Revision f60b52c4 (diff)
Added by Katja Luther over 1 year ago

ref #8182: Dna should be DNA

Revision ff454f55 (diff)
Added by Katja Luther over 1 year ago

ref #8182: use bgbm-import instead of ip address

History

#1 Updated by Katja Luther almost 2 years ago

#2 Updated by Katja Luther over 1 year ago

  • Status changed from New to In Progress
  • Target version changed from Release 5.7 to Release 5.8

#3 Updated by Andreas Müller over 1 year ago

is this ready or should we create ticket for open issues?

#4 Updated by Katja Luther over 1 year ago

  • Description updated (diff)

#5 Updated by Katja Luther over 1 year ago

  • Description updated (diff)

#6 Updated by Andreas Müller 5 days ago

is this still an open issue? Should it be reviewed? Should open issues be moved to new ticket?

Is there an example link for the result?

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