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bug #8075

multiple cascase all-delete-orphan exceptions related to DefinedTermBase.representations

Added by Andreas Kohlbecker 10 days ago. Updated 10 days ago.

Status:
New
Priority:
New
Assignee:
Andreas Kohlbecker
Category:
cdm-vaadin
Target version:
Release 5.6
Start date:
02/07/2019
Due date:
% Done:

0%

Severity:
normal
Found in Version:
Tags:
phycobank

Description

In the Registration UI there are a couple of
org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" ... errors all related to eu.etaxonomy.cdm.model.common.DefinedTermBase.representations:

The according tickets are

#7945 "TaxonNamePopupEditor: missing genus causes exception when updating name parts visibility": 

org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: eu.etaxonomy.cdm.model.common.DefinedTermBase.representations
               at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:99)
               at org.hibernate.engine.internal.Collections.processUnreachableCollection(Collections.java:50)
               at org.hibernate.event.internal.AbstractFlushingEventListener.flushCollections(AbstractFlushingEventListener.java:243)
               at org.hibernate.event.internal.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:86)
               at org.hibernate.event.internal.DefaultAutoFlushEventListener.onAutoFlush(DefaultAutoFlushEventListener.java:44)
               at org.hibernate.internal.SessionImpl.autoFlushIfRequired(SessionImpl.java:1251)
               at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1319)
               at org.hibernate.internal.QueryImpl.list(QueryImpl.java:87)
               at org.hibernate.internal.AbstractQueryImpl.uniqueResult(AbstractQueryImpl.java:960)
               at eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl.countTaxonNameParts(TaxonNameDaoHibernateImpl.java:997)
               at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:354)
               at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:375)
...
               at com.sun.proxy.$Proxy611.findTaxonNameParts(Unknown Source)
               at eu.etaxonomy.cdm.service.TaxonNameStringFilterablePagingProvider.size(TaxonNameStringFilterablePagingProvider.java:196)
               at org.vaadin.viritin.fields.LazyComboBox$7.size(LazyComboBox.java:261)
               at org.vaadin.viritin.LazyList.size(LazyList.java:229)
               at org.vaadin.viritin.LazyList$1.<init>(LazyList.java:302)
               at org.vaadin.viritin.LazyList.iterator(LazyList.java:299)
               at java.util.AbstractCollection.contains(AbstractCollection.java:99)
               at org.vaadin.viritin.LazyList.contains(LazyList.java:284)
               at eu.etaxonomy.vaadin.component.WeaklyRelatedEntityCombobox.setValue(WeaklyRelatedEntityCombobox.java:199)
               at eu.etaxonomy.cdm.vaadin.view.name.TaxonNameEditorPresenter.onFieldReplaceEvent(TaxonNameEditorPresenter.java:379)
...
               at eu.etaxonomy.vaadin.mvp.AbstractPopupEditor.replaceComponent(AbstractPopupEditor.java:928)
               at eu.etaxonomy.cdm.vaadin.view.name.TaxonNamePopupEditor.updateFieldVisibility(TaxonNamePopupEditor.java:730)
               at eu.etaxonomy.cdm.vaadin.view.name.TaxonNamePopupEditor.updateAuthorshipFields(TaxonNamePopupEditor.java:628)
               at eu.etaxonomy.cdm.vaadin.view.name.TaxonNamePopupEditor.afterItemDataSourceSet(TaxonNamePopupEditor.java:556)
               at eu.etaxonomy.vaadin.mvp.AbstractPopupEditor.loadInEditor(AbstractPopupEditor.java:812)

#8065 "HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table":

Caused by: org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: eu.etaxonomy.cdm.model.common.DefinedTermBase.representations
    at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:99)
    at org.hibernate.engine.internal.Collections.processUnreachableCollection(Collections.java:50)
    at org.hibernate.event.internal.AbstractFlushingEventListener.flushCollections(AbstractFlushingEventListener.java:243)
    at org.hibernate.event.internal.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:86)
    at org.hibernate.event.internal.DefaultAutoFlushEventListener.onAutoFlush(DefaultAutoFlushEventListener.java:44)
    at org.hibernate.internal.SessionImpl.autoFlushIfRequired(SessionImpl.java:1251)
    at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1767)
    at org.hibernate.internal.CriteriaImpl.list(CriteriaImpl.java:363)
    at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.findByUuid(CdmEntityDaoBase.java:423)
...
    at eu.etaxonomy.cdm.api.service.ServiceBase.load(ServiceBase.java:214)
...
    at com.sun.proxy.$Proxy556.load(Unknown Source)
    at eu.etaxonomy.cdm.vaadin.component.CdmBeanItemContainerFactory.buildTermItemContainer(CdmBeanItemContainerFactory.java:89)
    at eu.etaxonomy.cdm.vaadin.view.name.SpecimenTypeDesignationWorkingsetEditorPresenter$1.create(SpecimenTypeDesignationWorkingsetEditorPresenter.java:206)
    at eu.etaxonomy.cdm.vaadin.view.name.SpecimenTypeDesignationWorkingsetEditorPresenter$1.create(SpecimenTypeDesignationWorkingsetEditorPresenter.java:199)

#7881 "reference selection combobox broken after error in ...":

... cascade="all-delete-orphan" was no longer referenced by the owning entity instance: eu.etaxonomy.cdm.model.common.DefinedTermBase.representations

Other situations from the edit-test cdm-server log file:

Caused by: org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: eu.etaxonomy.cdm.model.common.DefinedTermBase.representations
        at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:99)
        at org.hibernate.engine.internal.Collections.processUnreachableCollection(Collections.java:50)
        at org.hibernate.event.internal.AbstractFlushingEventListener.flushCollections(AbstractFlushingEventListener.java:243)
        at org.hibernate.event.internal.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:86)
        at org.hibernate.event.internal.DefaultAutoFlushEventListener.onAutoFlush(DefaultAutoFlushEventListener.java:44)
        at org.hibernate.internal.SessionImpl.autoFlushIfRequired(SessionImpl.java:1251)
        at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1319)
        at org.hibernate.internal.QueryImpl.list(QueryImpl.java:87)
        at org.hibernate.internal.AbstractQueryImpl.uniqueResult(AbstractQueryImpl.java:960)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl.countTaxonNameParts(TaxonNameDaoHibernateImpl.java:997)
        at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:354)
        at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:375)
...
        at com.sun.proxy.$Proxy611.findTaxonNameParts(Unknown Source)
        at eu.etaxonomy.cdm.service.TaxonNameStringFilterablePagingProvider.size(TaxonNameStringFilterablePagingProvider.java:196)
        at org.vaadin.viritin.fields.LazyComboBox$7.size(LazyComboBox.java:261)

3 times

[phycobank] 2018-12-07 13:50:02,664 ...
Caused by: org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: eu.etaxonomy.cdm.model.common.DefinedTermBase.representations
        at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:99)
        at org.hibernate.engine.internal.Collections.processUnreachableCollection(Collections.java:50)
        at org.hibernate.event.internal.AbstractFlushingEventListener.flushCollections(AbstractFlushingEventListener.java:243)
        at org.hibernate.event.internal.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:86)
        at org.hibernate.event.internal.DefaultAutoFlushEventListener.onAutoFlush(DefaultAutoFlushEventListener.java:44)
        at org.hibernate.internal.SessionImpl.autoFlushIfRequired(SessionImpl.java:1251)
        at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1319)
        at org.hibernate.internal.QueryImpl.list(QueryImpl.java:87)
        at org.hibernate.internal.AbstractQueryImpl.uniqueResult(AbstractQueryImpl.java:960)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl.countTaxonNameParts(TaxonNameDaoHibernateImpl.java:997)
        at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:354)
        at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:375)
...
        at com.sun.proxy.$Proxy611.findTaxonNameParts(Unknown Source)
        at eu.etaxonomy.cdm.service.TaxonNameStringFilterablePagingProvider.size(TaxonNameStringFilterablePagingProvider.java:196)
        at org.vaadin.viritin.fields.LazyComboBox$7.size(LazyComboBox.java:261)
        at org.vaadin.viritin.LazyList.size(LazyList.java:229)
        at org.vaadin.viritin.LazyList$1.<init>(LazyList.java:302)
        at org.vaadin.viritin.LazyList.iterator(LazyList.java:299)
        at java.util.AbstractCollection.contains(AbstractCollection.java:99)
        at org.vaadin.viritin.LazyList.contains(LazyList.java:284)
        at eu.etaxonomy.vaadin.component.WeaklyRelatedEntityCombobox.setValue(WeaklyRelatedEntityCombobox.java:199)
        at eu.etaxonomy.cdm.vaadin.view.name.TaxonNameEditorPresenter.onFieldReplaceEvent(TaxonNameEditorPresenter.java:379)

Caused by: org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: eu.etaxonomy.cdm.model.common.DefinedTermBase.representations
        at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:99)
        at org.hibernate.engine.internal.Collections.processUnreachableCollection(Collections.java:50)
        at org.hibernate.event.internal.AbstractFlushingEventListener.flushCollections(AbstractFlushingEventListener.java:243)
        at org.hibernate.event.internal.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:86)
        at org.hibernate.event.internal.DefaultAutoFlushEventListener.onAutoFlush(DefaultAutoFlushEventListener.java:44)
        at org.hibernate.internal.SessionImpl.autoFlushIfRequired(SessionImpl.java:1251)
        at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1319)
        at org.hibernate.internal.QueryImpl.list(QueryImpl.java:87)
        at org.hibernate.internal.AbstractQueryImpl.uniqueResult(AbstractQueryImpl.java:960)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl.countTaxonNameParts(TaxonNameDaoHibernateImpl.java:997)
        at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:354)
        at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:375)
...
        at com.sun.proxy.$Proxy611.findTaxonNameParts(Unknown Source)
        at eu.etaxonomy.cdm.service.TaxonNameStringFilterablePagingProvider.size(TaxonNameStringFilterablePagingProvider.java:196)
        at org.vaadin.viritin.fields.LazyComboBox$7.size(LazyComboBox.java:261)
        at org.vaadin.viritin.LazyList.size(LazyList.java:229)
        at org.vaadin.viritin.LazyList$1.<init>(LazyList.java:302)
        at org.vaadin.viritin.LazyList.iterator(LazyList.java:299)
        at java.util.AbstractCollection.contains(AbstractCollection.java:99)
        at org.vaadin.viritin.LazyList.contains(LazyList.java:284)
        at eu.etaxonomy.vaadin.component.WeaklyRelatedEntityCombobox.setValue(WeaklyRelatedEntityCombobox.java:199)

4 times

Caused by: org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: eu.etaxonomy.cdm.model.common.DefinedTermBase.representations
        at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:99)
        at org.hibernate.engine.internal.Collections.processUnreachableCollection(Collections.java:50)
        at org.hibernate.event.internal.AbstractFlushingEventListener.flushCollections(AbstractFlushingEventListener.java:243)
        at org.hibernate.event.internal.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:86)
        at org.hibernate.event.internal.DefaultAutoFlushEventListener.onAutoFlush(DefaultAutoFlushEventListener.java:44)
        at org.hibernate.internal.SessionImpl.autoFlushIfRequired(SessionImpl.java:1251)
        at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1767)
        at org.hibernate.internal.CriteriaImpl.list(CriteriaImpl.java:363)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.findByUuid(CdmEntityDaoBase.java:423)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.load(CdmEntityDaoBase.java:771)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase.load(VersionableDaoBase.java:113)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase.load(VersionableDaoBase.java:106)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase.load(VersionableDaoBase.java:36)
        at eu.etaxonomy.cdm.api.service.ServiceBase.load(ServiceBase.java:214)
...
        at com.sun.proxy.$Proxy558.load(Unknown Source)
        at eu.etaxonomy.cdm.vaadin.component.CdmBeanItemContainerFactory.buildTermItemContainer(CdmBeanItemContainerFactory.java:89)

Caused by: org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: eu.etaxonomy.cdm.model.common.DefinedTermBase.representations
        at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:99)
        at org.hibernate.engine.internal.Collections.processUnreachableCollection(Collections.java:50)
        at org.hibernate.event.internal.AbstractFlushingEventListener.flushCollections(AbstractFlushingEventListener.java:243)
        at org.hibernate.event.internal.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:86)
        at org.hibernate.event.internal.DefaultAutoFlushEventListener.onAutoFlush(DefaultAutoFlushEventListener.java:44)
        at org.hibernate.internal.SessionImpl.autoFlushIfRequired(SessionImpl.java:1251)
        at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1767)
        at org.hibernate.internal.CriteriaImpl.list(CriteriaImpl.java:363)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.findByUuid(CdmEntityDaoBase.java:423)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.findByUuid(CdmEntityDaoBase.java:410)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase.findByUuid(VersionableDaoBase.java:67)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase.findByUuid(VersionableDaoBase.java:36)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.load(CdmEntityDaoBase.java:745)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase.load(VersionableDaoBase.java:93)
        at eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase.load(VersionableDaoBase.java:36)
        at eu.etaxonomy.cdm.api.service.ServiceBase.load(ServiceBase.java:184)
        at eu.etaxonomy.cdm.api.service.ServiceBase.load(ServiceBase.java:42)
...
        at com.sun.proxy.$Proxy694.load(Unknown Source)
        at eu.etaxonomy.cdm.vaadin.view.registration.RegistrationWorkingsetPresenter.saveRegistrationStatusChange(RegistrationWorkingsetPresenter.java:364)

Related issues

Related to Edit - bug #7945: TaxonNamePopupEditor: missing genus causes exception when updating name parts visibility New 12/10/2018
Related to Edit - bug #8065: HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table New 02/05/2019
Related to Edit - bug #7881: reference selection combobox broken after error in ... New 10/30/2018

History

#1 Updated by Andreas Kohlbecker 10 days ago

  • Description updated (diff)

#2 Updated by Andreas Kohlbecker 10 days ago

  • Description updated (diff)

#3 Updated by Andreas Kohlbecker 10 days ago

  • Target version changed from Release 5.5 to Release 5.6

#4 Updated by Andreas Kohlbecker 10 days ago

  • Related to bug #7945: TaxonNamePopupEditor: missing genus causes exception when updating name parts visibility added

#5 Updated by Andreas Kohlbecker 10 days ago

  • Related to bug #8065: HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table added

#6 Updated by Andreas Kohlbecker 10 days ago

  • Related to bug #7881: reference selection combobox broken after error in ... added

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