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From 11/05/2020 to 12/04/2020

12/04/2020

05:59 PM Revision 2190c91b (taxeditor): fix wrong dependency to 5.18.0 snapshot version in printpublisher ...
Andreas Müller
04:47 PM bug #9347: LIE during ABCD file import
This should be fixed soon. Andreas Müller
03:32 PM bug #9347 (New): LIE during ABCD file import
File imported: attachment:Kurs-19_20_Herbar.xml
~~~~
++++++++Import Report+++++++++
Specimens created: 0
Skippe...
Andreas Kohlbecker
04:35 PM feature request #4866 (Closed): Implement clone method for complete classifications
This is implemented so far (tested for Centaurea/FoG on command line) with some open issues. Andreas Müller
04:33 PM bug #9349 (New): Open issues for classification cloning
* "Import Result" including count cloned taxa, synonyms, names, ... (do we need to merge UpdateResult and ImportResul... Andreas Müller
04:21 PM feature request #9320 (In Progress): Move additional publication information to nomenclatural source
Andreas Müller
04:11 PM task #9315 (In Progress): Remove old single source citation and microCitation columns
Andreas Müller
04:11 PM feature request #9327 (In Progress): Make taxon secundum reference an original source
Andreas Müller
04:10 PM bug #8141: explicitSource as additional attribute for TypeDesignationStatus
not so high priority as long as TypeDesignationStatus vocabularies can not be edited Andreas Müller
03:50 PM bug #9348 (New): Specimen online import dialog issues
1. The dialog has extrem width (at least in the KDE desktop environment) this seems to come from the widht of the com... Andreas Kohlbecker
03:00 PM bug #9264: Flag for toggle button for linking taxon with navigator looses/switch value without cl...
I hope this is fast to fix, therefore I move it to 5.19 Andreas Müller
02:55 PM feature request #9192: Layout issues for source in taxonnode details
If close, please move it back to 5.18 Andreas Müller
02:55 PM feature request #9192: Layout issues for source in taxonnode details
This to me looks fine now. Maybe we could have a bit more space above "Related persons or teams if the "more" section... Andreas Müller
02:48 PM bug #9073: Configuring the matrix view throws HTTP invoker exception
When testing this I got another exception (NPE) during save:
~~~
last remote method : http://test.e-taxonomy.eu:8...
Andreas Müller
02:45 PM bug #9245 (Feedback): Creating derived units from existing derived unit is not possible in specim...
This to me seems to be fixed. Katja can you check, and if true add commit and correct target version? Andreas Müller
02:23 PM bug #9346: Adding specimen to character matrix fails sometimes
The Problem occurred with unit ID 433 in rem_conf_am (Dianthella test Node; Germany, Berlin (MC 67)). Andreas Müller
01:32 PM bug #9346 (Resolved): Adding specimen to character matrix fails sometimes
There are two issues:
1. the SourceDTO is not serializable
2. LIE
~~~ text
ENTRY org.eclipse.e4.ui.workbench...
Katja Luther
02:10 PM bug #8660 (Duplicate): Generic menu creation for Term trees
I think this is a duplicate for #9338 though the focus how to implement it has changed. Andreas Müller
02:09 PM Revision b4323390 (taxeditor): Revert "Updated version in pom / project files to taxeditor versio...
This reverts commit bc421a42016f0e20f65ad9f2cc818899b53508e0. Katja Luther
02:09 PM feature request #9338: Restructure term menus
This ticket seems to be somehow contradictory to #8660. However, currently I think a menu not automatically created i... Andreas Müller
01:54 PM Revision b1eecb5d (taxeditor): add import
Katja Luther
01:50 PM Revision 279a5b72 (taxeditor): missed to commit adapted manifest
Katja Luther
01:34 PM Revision 5a1563c0 (taxeditor): avoid NPE when using new node as parent for d&d
Katja Luther
12:58 PM bug #9345 (New): Prevent or warn about unparsable values when entering quantitative data
Currently when entering e.g. "2,3" and pressing OK, the data is not stored but also no warning is given that it is p... Andreas Müller
11:51 AM Revision 2c2faa69 (taxeditor): avoid NPE when using new node as parent for d&d
Katja Luther
11:51 AM Revision aaea7d8a (taxeditor): Revert "avoid NPE when using new node as parent for d&d"
This reverts commit 64dd32e955f33805399bc2b70b2f6bc14c12d4a0. Katja Luther
11:49 AM Revision 09e63d7a (taxeditor): fix problem with last selected references
Katja Luther
11:48 AM bug #9344 (Closed): Datasets in Descriptive Dataset Navigator should be ordered
... alphabetically
Currently they seem to be unordered.
Andreas Müller
11:47 AM Revision bc421a42 (taxeditor): Updated version in pom / project files to taxeditor version : 5.13...
jenkins
11:09 AM feature request #8554 (Feedback): Allow drag&drop from character into FeatureTrees
this is probably a duplicate for #8774/#9337 (issues 4 and 5)? Andreas Müller
10:58 AM Revision 64dd32e9 (taxeditor): avoid NPE when using new node as parent for d&d
Katja Luther
10:03 AM bug #7990 (Closed): Moving a feature via d&d does not make the Feature Tree Editor dirty
ups no, this issue is solved with the new implementation. Katja Luther
10:01 AM bug #7990 (Feedback): Moving a feature via d&d does not make the Feature Tree Editor dirty
Is this still an open issue with the new term tree implementation? If not we should close it as works for me or as du... Andreas Müller
09:34 AM Revision 028014b6 (taxeditor): Updated version in pom / project files to taxeditor version : 5.18...
jenkins

12/03/2020

09:34 PM Revision 113e67ef (taxeditor): Merge branch 'release/5.18.0' into develop
jenkins
09:34 PM Revision 5155769b (taxeditor): Merge branch 'release/5.18.0'
jenkins
08:54 PM Revision c654b140 (cdm-server): Merge branch 'release/5.18.0' into develop
jenkins
08:54 PM Revision 51596a1b (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
08:53 PM Revision f0a436fd (cdm-server): updating poms for branch'release/5.18.0' with non-snapshot versions
jenkins
08:52 PM Revision 345bcff8 (cdm-webapp): Merge branch 'release/5.18.0' into develop
jenkins
08:52 PM Revision d9a3e77e (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
08:51 PM Revision a08a9f9c (cdm-webapp): updating poms for branch'release/5.18.0' with non-snapshot versions
jenkins
08:51 PM Revision 8eb6f658 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.18.0
jenkins
08:47 PM Revision c7e0b908 (cdm-dataportal): Merge branch 'release/5.18.0' into develop
jenkins
08:47 PM Revision 6b7f29c7 (cdm-dataportal): updating poms for branch'release/5.18.0' with non-snapshot ve...
jenkins
08:47 PM Revision d2962586 (cdm-dataportal): release-preparation: production level css
jenkins
08:47 PM Revision 9ed2ff7f (cdm-vaadin): Merge branch 'release/5.18.0' into develop
jenkins
08:47 PM Revision 9251885f (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
08:43 PM Revision 90094ee9 (cdm-vaadin): updating poms for branch'release/5.18.0' with non-snapshot versions
jenkins
08:43 PM Revision 99fbbfaf (cdm-vaadin): jenkins bumping cdmlib.version to 5.18.0
jenkins
08:28 PM bug #8774 (Closed): Reimplement term tree editors to implement the general save strategy
I think we can close this ticket. All remaining issues will go into the follow up ticket #9337 Andreas Müller
02:00 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
I move the expand of the tree after saving to the follow up ticket. Katja Luther
12:35 PM bug #8774: Reimplement term tree editors to implement the general save strategy
The saving of the termtree editor before adding a new term is not necessary anymore, only moving a new term is not po... Katja Luther
11:26 AM bug #8774: Reimplement term tree editors to implement the general save strategy
D&D on itself makes a node disappear and saving it creates a stackOverflow Andreas Müller
11:23 AM bug #8774: Reimplement term tree editors to implement the general save strategy
The tree should stay expanded when saving Andreas Müller
08:26 PM feature request #8756 (Feedback): Refresh button for structure tree and property tree in Characte...
I tested again. It seems to work if the editing of the structure tree is done in the same TaxEditor instance or if th... Andreas Müller
08:00 PM bug #9343 (Duplicate): Open issues for DTO based term tree & character editor
upps, this is a duplicate of course for #9337. I moved all issues there Andreas Müller
07:28 PM bug #9343 (Duplicate): Open issues for DTO based term tree & character editor
copied from #8774
* tree collapses sometimes after save
* d&d from vocabulary editor to character editor not yet ...
Andreas Müller
07:33 PM Revision af199beb (cdmlib): Updating develop poms back to pre merge state
jenkins
07:33 PM Revision 638beb74 (cdmlib): Merge branch 'master' into develop
jenkins
07:33 PM Revision 8c4580af (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
07:33 PM Revision 27b8c645 (cdmlib): Merge branch 'release/5.18.0'
jenkins
07:11 PM Revision 5bdde967 (cdmlib): updating poms for branch'release/5.18.0' with non-snapshot versions
jenkins
06:48 PM Revision f3722b4a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.18.0-S...
jenkins
06:47 PM Revision 66dbc081 (cdm-webapp): updating poms for 5.18.0 branch with snapshot versions
jenkins
06:47 PM Revision 6d43461a (cdm-webapp): updating poms for 5.19.0-SNAPSHOT development
jenkins
06:47 PM Revision 0e2580eb (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.19.0-S...
jenkins
06:30 PM bug #9267 (Closed): No sec reference for move change Synonym to accepted Taxon
First version was implemented now.
I think we can close this ticket. All the rest will be done in the follow up ti...
Andreas Müller
03:32 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
Now there is only a statement saying "The new taxon and the parent does not have the same secundum reference". But yo... Andreas Müller
01:55 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
A "hot fix" version is implemented now. The new accepted taxon keeps the secundum reference of the former synonym and... Katja Luther
06:24 PM Revision 0b1617f5 (taxeditor): Updated version in pom / project files to taxeditor version : 5.19...
jenkins
06:24 PM Revision f28ad9fa (taxeditor): Updated version in pom / project files to taxeditor version : 5.18...
jenkins
06:23 PM Revision 6b274bd6 (cdm-server): updating poms for 5.19.0-SNAPSHOT development
jenkins
06:23 PM Revision 599dde48 (cdm-vaadin): jenkins bumping cdmlib.version to 5.18.0-SNAPSHOT
jenkins
06:23 PM Revision 7e0d9ffd (cdm-dataportal): updating poms for 5.19.0-SNAPSHOT development
jenkins
06:23 PM Revision 1ae1237f (cdm-vaadin): updating poms for 5.19.0-SNAPSHOT development
jenkins
06:23 PM Revision 2e76afe1 (cdm-vaadin): updating poms for 5.18.0 branch with snapshot versions
jenkins
06:23 PM Revision c0d8b571 (cdm-vaadin): jenkins bumping cdmlib.version to 5.19.0-SNAPSHOT
jenkins
06:20 PM Revision 3a956fb6 (cdmlib): updating poms for 5.19.0-SNAPSHOT development
jenkins
06:20 PM Revision 2f1c9deb (cdmlib): updating poms for 5.18.0 branch with snapshot versions
jenkins
06:14 PM feature request #8529: [DISCUSS]Display of aggregated descriptions
Norbert, can you have a look on this ticket if you remember what was meant? Andreas Müller
06:09 PM bug #8874: move taxon is reverted when taxon is edited afterwards
Katja, do you remember why this ticket was assigned to me? Simply a mistake?
Can we reproduce this behavior?
Andreas Müller
05:52 PM bug #8547 (Closed): Default type of a newly created inReference should depend on the type of the ...
This is fixed as far as now by default the most likely reference type is now prefilled for inreferences.
There is ...
Andreas Müller
02:28 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
ReferenceType.inReferenceContraints() is a list now, so the first element in the list is the default preferred type. ... Andreas Müller
05:48 PM feature request #9342 (New): Only show specific reference types for inreferences
copied from #8547
RefereceType.inReferenceContraints() returns the possible values available for an inreference. T...
Andreas Müller
05:45 PM Revision 76ee473f (cdmlib): ref #8547 add inreference type for Proceedings
Andreas Müller
05:45 PM Revision 9f5a2d3a (cdmlib): throw exception when datasource could not be saved (instead of loggin...
Andreas Müller
05:44 PM Revision c58fbd18 (cdmlib): cleanup
Andreas Müller
05:39 PM bug #9199 (Closed): Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Works as expected. We can close this ticket. Andreas Müller
03:31 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced ob...
Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > ~~Another minor issue: could we move...
Katja Luther
03:13 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced ob...
Andreas Müller
03:09 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Andreas Müller wrote:
> Andreas Müller wrote:
> > ~~Another minor issue: could we move "Original Information" above...
Andreas Müller
01:56 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced ob...
this should be solved with last commit. Katja Luther
05:25 PM Revision 8bdc7bb8 (taxeditor): ref #9267: warning message instead of confirm message box
Katja Luther
05:21 PM task #9189 (Closed): Move datasource view to taxeditor.local
This works now but there are still open issues to solve before all cdmlib-db stuff can fully migrate to taxeditor.loc... Andreas Müller
05:20 PM feature request #9341 (New): Move local datasource access fully to taxeditor.local
The datasource view has been migrated to taxeditor.local in #9189.
However, there is still a dependency to cdmlib-...
Andreas Müller
05:19 PM Revision 49f27511 (taxeditor): ref #8774: only one message when trying to move new node
Katja Luther
04:59 PM Revision 9f3ac470 (taxeditor): some doc
Andreas Müller
04:55 PM Revision 25082155 (taxeditor): ref 9189 add mchange-commons-java to MANIFEST
Andreas Müller
04:42 PM Revision d9f875da (taxeditor): minor
Katja Luther
04:36 PM Revision 2fdfb0a3 (taxeditor): cleanup
Andreas Müller
04:36 PM Revision 88090686 (taxeditor): some gitignores
Andreas Müller
04:34 PM Revision 4228a4ef (taxeditor): ref 9189 add mchange-commons-java to dependency copy
Andreas Müller
03:36 PM feature request #9340 (Closed): Workflow support for secundum handling when making synonym a new ...
copied from #9267
(1) check above ticket for remaining issues. Most important is to have a preference to handle th...
Andreas Müller
03:26 PM Revision 5eabd2c1 (taxeditor): ref #9199: move original information behind name used in source
Katja Luther
02:25 PM Revision 46418777 (cdm-vaadin): ref #8547 make ReferenceType.inReferenceContraints() a list (adap...
Andreas Müller
02:23 PM Revision 2c0bb8e3 (cdmlib): ref #8547 make ReferenceType.inReferenceContraints() a list
Andreas Müller
01:55 PM task #6714: Create 001-cdm.h2.sql automatically
This is more or less done in 5.18 except for the copying issue Andreas Müller
01:35 PM Revision 91febabd (taxeditor): ref #8774: code cleaning
Katja Luther
01:35 PM Revision e33f888a (taxeditor): ref #8774: label issues in character editor
Katja Luther
01:09 PM Revision 427ed9f2 (taxeditor): ref #8774: label issues in character editor
Katja Luther
12:26 PM Revision 81222649 (taxeditor): ref #8774: save is not necessary for creating new terms
Katja Luther
12:01 PM Revision 4a70bee8 (cdm-dataportal): ref #8851 adapting test assertions to modified test data
Andreas Kohlbecker
10:53 AM Revision b15678f9 (taxeditor): ref #8774: change text for duplicates
Katja Luther
10:40 AM Revision 4756075a (taxeditor): ref #8774: avoid d&d to child of the dropped node
Katja Luther

12/02/2020

10:37 PM Revision 68aa76e0 (cdm-dataportal): ref #9322 changing test case for invalid designation to misap...
Andreas Kohlbecker
07:53 PM bug #8774: Reimplement term tree editors to implement the general save strategy
The above also happens when D&D a NamedAreae from NamedArea Term Editor to NamedArea Term Tree Editor, so it is proba... Andreas Müller
07:51 PM bug #8774: Reimplement term tree editors to implement the general save strategy
D&D a NamedArea term from a NamedArea Tree Term Editor to an Rank Tree Term Editor leeds to the below NPE:
D&D wit...
Andreas Müller
07:47 PM bug #8774: Reimplement term tree editors to implement the general save strategy
D&d a term onto its own child makes both disappear in the UI. Saving this is one way to create the above StackOverflo... Andreas Müller
07:38 PM bug #8774: Reimplement term tree editors to implement the general save strategy
after moving some ranks around in the term editor I got the following when trying to save:
~~~
last remote method...
Andreas Müller
01:11 PM bug #8774: Reimplement term tree editors to implement the general save strategy
The text for duplicate recognition should be improved from
This term tree does not allow duplicates and there exi...
Andreas Müller
01:00 PM bug #8774: Reimplement term tree editors to implement the general save strategy
When changing a tree by e.g. changing a flag (order relevant) and then adding a term a message comes that the tree ne... Andreas Müller
12:20 PM bug #8774: Reimplement term tree editors to implement the general save strategy
... this happens whereever I try to move the 3rd rank from position of being child of 2nd rank (but in the same sessi... Andreas Müller
12:17 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
AOOB with a rank tree with 3 top level children, first I moved 3rd rank to be child of 2nd rank, than I tried to move... Andreas Müller
11:47 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
I think all remaining issues are solved or moved to new tickets. Katja Luther
07:00 PM bug #9322 (Closed): Remove invalid designation taxon relationship
Andreas Müller
06:50 PM feature request #9282 (Closed): Add nomenclatural standing
Andreas Müller
06:28 PM Revision 387aef2a (taxeditor): ref #9199: layout issues and code cleaning
Katja Luther
06:22 PM Revision 0eb2578c (cdmlib): ref #6591 handle also AUD table in SingleTermRemover for removing ori...
Andreas Müller
06:21 PM Revision dcf6678d (cdmlib): cleanup
Andreas Müller
06:20 PM Revision e2d8dde3 (cdmlib): ref #9322 handle also AUD table in SingleTermRemover and connect the...
Andreas Müller
05:19 PM Revision 1fa1f3de (cdmlib): cleanup
Andreas Müller
05:13 PM bug #9257: revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by...
Katja Luther wrote:
> Andreas Kohlbecker wrote:
> > Hi Katja & AM, the current implementation partially filters for...
Andreas Müller
04:45 PM Revision 1c2b2e59 (cdmlib): move country methods to term service and some cleanup
Andreas Müller
04:31 PM feature request #9190 (In Progress): Make taxeditor.local a loadable plugin not installed by default
Andreas Müller
04:30 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
... looks like the error appears at different places depending on the type field that you enter data in Andreas Müller
04:28 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Also the NPE still exists, but with a different row number:
~~~
last remote method : http://test.e-taxonomy.eu:80...
Andreas Müller
04:25 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Andreas Müller wrote:
> ~~Another minor issue: could we move "Original Information" above ID Namespace and ID in Sou...
Andreas Müller
04:23 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced ob...
Andreas Müller wrote:
> Sometimes the nomenclatural source still shows "No external link" yet instead of no protolog...
Andreas Müller
11:45 AM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced ob...
please review. Katja Luther
11:42 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Andreas Müller wrote:
> NPE when editing a lectotype source
>
> ~~~
> last remote method : http://test.e-taxonom...
Katja Luther
04:15 PM Revision 7b2afc79 (cdmlib-apps): uncomment schema location in app-import pom (not sure why it was...
Andreas Müller
04:14 PM Revision a1c98b63 (cdmlib-apps): ref #9228 add CentaureaCloneActivator
Andreas Müller
04:12 PM Revision 11e38aae (cdmlib): ref #9228 , ref #4866 some fixes for subtree cloning
Andreas Müller
04:12 PM Revision 5d03f828 (cdmlib): cleanup
Andreas Müller
03:03 PM Revision 3385926d (cdmlib): ref #9267: set sec of new taxon to sec of synonym
Katja Luther
03:01 PM Revision bb2b5493 (taxeditor): ref #9267: add message if sec of new taxon differs from sec of new...
Katja Luther
02:46 PM Revision e796e4aa (taxeditor): ref #9189: move new menu item to the top
Katja Luther
02:42 PM task #9189: Move datasource view to taxeditor.local
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > The "New"...
Andreas Müller
02:27 PM Revision 3b11ede7 (taxeditor): avoid widget is disposed exception
Katja Luther
02:06 PM Revision 21015b47 (taxeditor): ref #8774: fix AOOB Exception in termtree editor
Katja Luther
02:05 PM bug #6356 (Closed): taxontree sort order as in editor
Norbert wrote: "alles klar, gelöst!" Andreas Kohlbecker
01:54 PM feature request #8308 (Worksforme): Extend specimen type designation editor
Andreas Kohlbecker
01:45 PM feature request #8308: Extend specimen type designation editor
This ticket can be set to "worksforme".
The image issue raised is not what the screenshot here shows. I will comment...
Wolf-Henning Kusber
01:27 PM bug #9313 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor
Andreas Kohlbecker
01:04 PM bug #9313: LazyInitializationException (LIE) in TaxonNamePopupEditor
no problems with existing names (orthogr. variant, corrected name, species name, genus name) anymore. Ticket can be c... Wolf-Henning Kusber
12:54 PM Revision 0b429510 (cdm-dataportal): ref #9322 removing taxon relationship invalid designation fro...
Andreas Kohlbecker
12:30 PM bug #8776 (In Progress): Open issues for TermCollection.allowDuplicates handling in TaxEditor
Andreas Müller
12:28 PM Revision ca0e1f12 (taxeditor): ref #4866, ref #9228 fix postgresql version number and add to giti...
Andreas Müller
12:07 PM Revision 9306fdac (taxeditor): ref #4866, ref #9228 preliminary revert moving h2, postgresql and ...
Andreas Müller
11:42 AM Revision d34bc6be (taxeditor): fix NPE in nameEditor
Katja Luther
11:35 AM Revision bd5b538f (taxeditor): ref #9199: fix NPE for newly created designation source
Katja Luther
11:35 AM Revision 0a20a617 (taxeditor): ref #9332: further clean up in editor
Katja Luther
09:07 AM feature request #9339: Improve warning message if save is necessary
We should do this soon Andreas Müller
08:22 AM feature request #9339 (New): Improve warning message if save is necessary
The actual warning message "The editor needs to be saved..." is misleading because normally only the active window is... Katja Luther

12/01/2020

08:45 PM Revision 77f6a14a (taxeditor): ref #4866, ref #9228 fix CloneClassificationOperation preliminary ...
Andreas Müller
08:41 PM Revision 0b79f873 (taxeditor): ref #4866, ref #9228 fix CloneClassificationOperation preliminary ...
Andreas Müller
08:36 PM Revision 77ad5e8c (taxeditor): ref #4866, ref #9228 fix CloneClassificationOperation preliminary ...
Andreas Müller
08:06 PM Revision 9d1786e4 (cdmlib): ref #4866, ref #9228 try to fix further test in suite
Andreas Müller
08:01 PM Revision 8d24eb30 (cdmlib): cleanup
Andreas Müller
08:01 PM Revision 2b75e024 (cdmlib): ref #4866, ref #9228 try to fix NameServiceImplTest in suite
Andreas Müller
07:45 PM Revision 32aa5af0 (cdmlib): ref #4866, ref #9228 add references for test
Andreas Müller
07:28 PM Revision 8f658368 (cdmlib): ref #4866, ref #9228 fix test and use referenceDao instead of refServ...
Andreas Müller
07:19 PM Revision 67518a48 (cdmlib): ref #4866, ref #9228 implement subtree clone (cont., fix taxon cloning)
Andreas Müller
07:02 PM feature request #4866: Implement clone method for complete classifications
this is a blocker for #9228 Andreas Müller
06:57 PM Revision 00f63413 (cdmlib): cleanup
Andreas Müller
06:33 PM Revision e04ce4b2 (cdmlib): ref #4866, ref #9228 implement subtree clone
Andreas Müller
04:43 PM task #9189: Move datasource view to taxeditor.local
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> and the classLoader is EquinoxClassLoader
...
Andreas Müller
02:42 PM task #9189: Move datasource view to taxeditor.local
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The finish button does not seem to wor...
Katja Luther
02:31 PM task #9189: Move datasource view to taxeditor.local
Katja Luther wrote:
> Andreas Müller wrote:
> > The finish button does not seem to work anymore (when using clone)....
Andreas Müller
12:55 PM task #9189: Move datasource view to taxeditor.local
Katja Luther wrote:
> Andreas Müller wrote:
> > The finish button does not seem to work anymore (when using clone)....
Andreas Müller
12:00 PM task #9189: Move datasource view to taxeditor.local
Andreas Müller wrote:
> The finish button does not seem to work anymore (when using clone).
This is caused by jav...
Katja Luther
11:50 AM task #9189: Move datasource view to taxeditor.local
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The "New" button is missing.
> >
> ...
Katja Luther
11:49 AM task #9189: Move datasource view to taxeditor.local
Andreas Müller wrote:
> Entering a name (or other information) now is very fast. It was slow before because I think ...
Katja Luther
11:37 AM task #9189: Move datasource view to taxeditor.local
Katja Luther wrote:
> Andreas Müller wrote:
> > The "New" button is missing.
>
> Shouldn't the new button should...
Andreas Müller
11:26 AM task #9189: Move datasource view to taxeditor.local
Entering a name (or other information) now is very fast. It was slow before because I think there was always done som... Andreas Müller
11:20 AM task #9189: Move datasource view to taxeditor.local
Andreas Müller wrote:
> The "New" button is missing.
Shouldn't the new button should be removed in #9119?
Katja Luther
11:17 AM task #9189: Move datasource view to taxeditor.local
The finish button does not seem to work anymore (when using clone). Andreas Müller
11:14 AM task #9189 (Feedback): Move datasource view to taxeditor.local
The "New" button is missing. Andreas Müller
11:12 AM task #9189: Move datasource view to taxeditor.local
Title translations are missing:
![](picture929-1.png)
Andreas Müller
04:39 PM bug #8851: display of name facts not appropriate in all cases
Walter, can you have a look after the next release, if this is now all correct? Andreas Müller
02:16 PM bug #8851 (Closed): display of name facts not appropriate in all cases
Andreas Kohlbecker
04:12 PM task #9206 (Closed): Solve cglib vs. cglib-nodep
the dependency to `hibernate-cglib-repack` was introduced by ben on Wed Feb 25 2009.
I don't see any further need f...
Andreas Kohlbecker
04:11 PM Revision 60942e5d (taxeditor): ref #9204, ref #9154 remove jtds and mssql from git in taxeditor.l...
Andreas Müller
04:10 PM Revision 70ed1e1f (taxeditor): ref #9204, ref #9154 add cdmlib-remote-webapp.war to gitignore (no...
Andreas Müller
03:55 PM task #9219: Revert: requests with %2F in URL are rejected by apache
to be done right after the release 5.18 is deployed to our servers Andreas Kohlbecker
03:50 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
updating description with latest TODOs Andreas Kohlbecker
03:47 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
.. and another one:
TODO: The methods `OccurrenceServiceImpl._findFieldUnitDTO` and `OccurrenceServiceImpl.findFie...
Andreas Kohlbecker
03:07 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
more TODO:
revise commented code and clean up
Andreas Kohlbecker
03:46 PM Revision 99996219 (taxeditor): ref #9204 remove H2, postgresql and mysql fully from taxeditor.cdmlib
Andreas Müller
03:41 PM task #8458 (Closed): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
Andreas Kohlbecker
03:41 PM task #8458 (Resolved): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
Applied in changeset commit:cdmlib|a20e6aec783ee2e911e75f315e0c9e0137c2e7e7. Andreas Kohlbecker
03:41 PM Revision a20e6aec (cdmlib): fix #8458 documenting FieldUnitDTOOccurrenceServiceImpl.findFieldUnit...
Andreas Kohlbecker
03:21 PM Revision 4e6b7379 (taxeditor): ref #9204 remove postgresql and mysql connector from taxeditor.cdm...
Andreas Müller
03:18 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Katja Luther wrote:
> Andreas Müller wrote:
> > Can we remove "Inapplicable IF" and "Only applicable if" for all te...
Andreas Müller
01:49 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Can we remove "Inapplicable IF" and "Only applicable if" for all term trees except for those...
Katja Luther
12:34 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
Can we remove "Inapplicable IF" and "Only applicable if" for all term trees except for those having term type "Featur... Andreas Müller
11:59 AM bug #8774: Reimplement term tree editors to implement the general save strategy

But this should be done immediately:
Rename menu entry "Term Tree Editor" to "Term Trees" as it is inconsistent ...
Andreas Müller
11:56 AM bug #8774: Reimplement term tree editors to implement the general save strategy
I moved the open menu items to #9338 Andreas Müller
08:44 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
I think all issues are fixed. Only the wrong position for a short time (#9337) and handling of flat trees still open ... Katja Luther
03:16 PM Revision 47d8963b (taxeditor): ref #9204 remove postgresql and mysql connector from taxeditor.cdm...
Andreas Müller
03:14 PM task #8635 (Closed): install collectd + facette for server monitoring
this is now fairly complete. the ticket is linked from the [[ServerAdministration]] wiki page, so it can be closed Andreas Kohlbecker
02:54 PM task #8419 (In Progress): harmonization of the different specimen representations
work still in progress, moving ticket to next milestone Andreas Kohlbecker
02:53 PM report #8379: Review strange specimen implementations
TODO: final check Andreas Kohlbecker
02:28 PM Revision 8a79d625 (taxeditor): ref #9204 add jtds and mssql-jdbc-8.4.1.jre8 to gitignore
Andreas Müller
02:26 PM Revision 73192ab3 (taxeditor): ref #9204 remove some cdmlib-dbs from git and upgrade postgresql v...
Andreas Müller
02:18 PM task #9265 (Closed): Adapt dataportal to new protologue handling
now that #8851 is solved the functionality which has been removed while working on this ticket is restored, so we c... Andreas Kohlbecker
02:13 PM Revision d9fa5913 (cdmlib): ref #8851 extednding init strategy for name descriptions by sources a...
Andreas Kohlbecker
02:11 PM Revision c11fa375 (cdm-dataportal): ref #8851 sources and annotations to name descriptions with test
Andreas Kohlbecker
01:45 PM Revision 233ae205 (cdmlib): ref #9204 upgrade postgresql driver to latest version
Andreas Müller
01:39 PM Revision 860adb95 (taxeditor): rename termtree editors to term trees in menu
Katja Luther
01:38 PM Revision a3a44561 (cdmlib): move mchange-commons-java version to parent pom
Andreas Müller
01:30 PM Revision 5c44e322 (taxeditor): ref #9189: harmonize l10n files
Katja Luther
01:28 PM Revision 59174ab0 (cdmlib): ref #4866, ref #9228 implement subtree clone in branch
Andreas Müller
12:18 PM bug #8522: Make type status mandatory in Name type designation editor
Note: A name type might be a status only that is not in the dropdown list, such as:
conserved type
rejected type
t...
Wolf-Henning Kusber
11:55 AM feature request #9338: Restructure term menus
I put milestone to 5.19 as it belongs to #8774 content wise. Andreas Müller
11:55 AM feature request #9338 (Closed): Restructure term menus
We now have the vocabulary menu and the term tree menu. Both look very different but should look similar.
To me it...
Andreas Müller
11:30 AM feature request #9326: Show all authors in bibliographic references
this is rather a question of how the cache strategy. Therefore I am changing category and assignee accordingly Andreas Kohlbecker
10:57 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
~~Another minor issue: could we move "Original Information" above ID Namespace and ID in Source. It is probably more ... Andreas Müller
10:56 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
NPE when editing a lectotype source
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/r...
Andreas Müller
10:52 AM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced ob...
The space between URI and type (in external links could be a bit smaller and therefore a bit more space between type ... Andreas Müller
10:51 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Sometimes the nomenclatural source still shows "No external link" yet instead of no protologue yet.
![](picture920...
Andreas Müller
10:09 AM task #9228: Adaptations to allow editing Centaurea in Flora of Greece
AM: ...
Ich würde den Subtree jetzt clonen, d.h. für jedes Taxon eine Kopie anlegen, in der alle Daten (Synonyme, ...
Andreas Müller

11/30/2020

05:50 PM Revision 04f81145 (cdm-dataportal): ref #8851 adapting side-effected NameRelationshipsTest
Andreas Kohlbecker
05:33 PM Revision f06c22c7 (cdm-dataportal): ref #8851 adding missing space
Andreas Kohlbecker
05:23 PM Revision 79bd5456 (cdm-dataportal): ref #8851 adapting test for name desciptions
Andreas Kohlbecker
05:14 PM Revision e024a603 (cdm-dataportal): ref #8851, ref #9265 improved re-implementation of name desci...
Andreas Kohlbecker
04:54 PM bug #8851: display of name facts not appropriate in all cases
to query for relevant data:
~~~sql
SELECT db.DTYPE, db.id, feature.titleCache, deb.DTYPE, osb.id, osb.citation_id...
Andreas Kohlbecker
03:51 PM feature request #9337 (In Progress): Open issues for reimplementation of termtree editors
copied from #8774
1. Show supplemental data (IMPORTANT)
2. For a very short time it still seems to open it on ...
Katja Luther
03:42 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> When adding/removing terms the tree should stay expanded. Currently it collapses and you hav...
Katja Luther
02:42 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> There is still camle case in the label
>
> ![](picture539-1.png)
this is fixed
Katja Luther
10:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > The duplicate check should be done w...
Katja Luther
03:40 PM Revision 0e21282a (cdmlib): ref #8774: save term tree titleCache
Katja Luther
03:25 PM task #9265 (In Progress): Adapt dataportal to new protologue handling
now I found the missing bit.
In commit:cdm-dataportal|f9b5740e33ff94ab9e1703774379f5d67d103649 the apparently imc...
Andreas Kohlbecker
01:08 PM task #9265 (Closed): Adapt dataportal to new protologue handling
cant see that there is still something missing and thus closing this ticket Andreas Kohlbecker
02:55 PM bug #9103 (Closed): missing exception handling in TaxoNodeDto
the last commit fixes the potential NPE that was in the code after the previous commit. The code looks ok now and the... Andreas Kohlbecker
01:06 PM bug #9103: missing exception handling in TaxoNodeDto
Andreas Kohlbecker wrote:
> Katja Luther wrote:
> > the null check for the classification is missing, the rest seem...
Katja Luther
12:13 PM bug #9103: missing exception handling in TaxoNodeDto
Katja Luther wrote:
> the null check for the classification is missing, the rest seems to be correct.
Good point,...
Andreas Kohlbecker
11:56 AM bug #9103 (Feedback): missing exception handling in TaxoNodeDto
the null check for the classification is missing, the rest seems to be correct. Katja Luther
02:47 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
Katja Luther wrote:
> The type of the in-reference depends on ReferenceType.inReferenceContraints, we should add the...
Katja Luther
02:33 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
Andreas Müller wrote:
> I got the following NPE when playing around with the dialog:
>
> ~~~
>
This should b...
Katja Luther
02:16 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
The type of the in-reference depends on ReferenceType.inReferenceContraints, we should add the constraints mentioned ... Katja Luther
02:30 PM bug #6623 (Closed): formatter for bibliografic citations with citationDetail
I am pretty sure that this was a requirement for the TypeDesignationManager which was composing References + referen... Andreas Kohlbecker
02:29 PM Revision b5fdbda7 (taxeditor): avoid NPE
Katja Luther
02:04 PM feature request #9229 (Closed): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading...
the issue has been fixed in #9318, so we can close this ticket again. Andreas Kohlbecker
01:45 PM feature request #9336 (New): Serverside preference for last used references
ERS:
eine weitere Auffälligkeit:
bei der Auswahl von Referenzen für Faktendaten (in meinem Fall für Verbreitung...
Katja Luther
01:39 PM Revision da9e29c4 (cdmlib): ref #9103: add handling of classifications in TaxonnodeDto - continue
Katja Luther
01:24 PM task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..)
there are two open FIXMEs in the method:
~~~
// FIXME defining propertyPaths inside of transactional service meth...
Andreas Kohlbecker
01:17 PM Revision 6706afc3 (cdmlib): ref #9103: add handling of classifications in TaxonnodeDto
Katja Luther
01:12 PM bug #9220 (Closed): adapt dataportal to /registrationDTO now using identifier as query parameter...
Andreas Kohlbecker
01:11 PM bug #9218 (Closed): Change /registrationDTO/identifier/... signatures to use query parameters ins...
can be closed now that remaining tasks are copied to #9275 Andreas Kohlbecker
01:09 PM bug #9318 (Closed): TaxonNameEditor: nomenclatural reference no longer selectable
Andreas Kohlbecker
01:06 PM task #9222 (Closed): Adapt dataportal to switch to originalSource for remaining single sourced cl...
Andreas Kohlbecker
12:49 PM Revision 87caa5aa (taxeditor): ref #8774: adapt to termNodeDto changes
Katja Luther
12:37 PM feature request #4754: Implement webservice to get the date of the last change or to check if the...
BTW: this is the relevant method in the AbstractOaiPmhController: `eu.etaxonomy.cdm.remote.controller.oaipmh.Abstract... Andreas Kohlbecker
12:09 PM Revision 94959be3 (cdmlib): ref #9103 adding missing null check
Andreas Kohlbecker
12:06 PM feature request #9262 (Closed): Several open issues for cdmlight export related to Cactaceae and ...
Andreas Müller wrote:
> so can we close the ticket?
yes.
Katja Luther
12:06 PM bug #9256 (Closed): CdmLightExport: NameTypeDesignation string misses parenthesis for authors
Katja Luther
12:02 PM task #9189: Move datasource view to taxeditor.local
yes, please check whether everything still works. Katja Luther
12:00 PM Revision e1397e51 (cdmlib): cleanup
Andreas Müller
11:59 AM bug #8174: First test fails if term data is in loaded DataSet
Andreas Kohlbecker wrote:
> I think we should go for option 3) that is to remove TestingTermInitializer and to rely ...
Andreas Kohlbecker
11:48 AM Revision 79221c91 (cdm-dataportal): ref #9279 adapting test to modified output of the TypeDesigna...
Andreas Kohlbecker
11:33 AM Revision 758cf8ed (cdmlib): Adapt javadoc for TypeDesignationBase
Andreas Müller
11:00 AM Revision 7c5f89b4 (cdmlib): ref #8774: avoid NPE in termNodeDto
Katja Luther
10:58 AM task #9228 (In Progress): Adaptations to allow editing Centaurea in Flora of Greece
Andreas Müller
09:41 AM feature request #9192: Layout issues for source in taxonnode details
I think the only thing still open, is the gap on top of the expandable element. I move this to 5.19 because it is not... Katja Luther
09:37 AM Revision 69bed327 (taxeditor): fix #9199: layout issues in nomenclatural source details and exter...
Katja Luther
09:37 AM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced ob...
Applied in changeset commit:taxeditor|69bed327b7a5028e5f904ffe9ac8cca1d01a20e9. Katja Luther
09:26 AM bug #9257: revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by...
Andreas Kohlbecker wrote:
> Hi Katja & AM, the current implementation partially filters for DerivedUnits of the type...
Katja Luther
09:18 AM feature request #9299 (Closed): Add LSID to author and reference details
the issues mentioned above are solved, so I close this ticket Katja Luther

11/27/2020

07:22 PM task #9280 (Closed): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel()
This has been fixed. As all code compiles now I think review is not necessary. Please review if you think it is needed. Andreas Müller
07:20 PM Revision e522c53f (taxeditor): remove unwanted commit
Andreas Müller
07:20 PM Revision cc7051ed (taxeditor): ref #9280 adapt TaxEditor to new Term.getLabel() (cont. 2)
Andreas Müller
07:16 PM Revision 2a7ad236 (taxeditor): ref #9280 adapt TaxEditor to new Term.getLabel() (cont.)
Andreas Müller
07:08 PM Revision 137d0ad0 (taxeditor): ref #9280 adapt TaxEditor to new Term.getLabel()
Andreas Müller
07:08 PM Revision 4e6a6782 (taxeditor): cleanup
Andreas Müller
06:33 PM bug #9322 (Resolved): Remove invalid designation taxon relationship
This is generally fixed. Only in integration_reference there is still 1 record left (mail sent to AK).
After relea...
Andreas Müller
06:28 PM Revision 340adc01 (cdmlib-apps): ref #9280 adapt appimport to new Term.getLabel()
Andreas Müller
06:27 PM Revision 82fc7e6e (cdmlib-apps): ref #9322 adapt BerlinModelOccurrenceSourceImport to removed Inv...
Andreas Müller
06:24 PM Revision 18620ac6 (cdmlib): ref #9280 rename IKeyTerm.getMessage() => .getLabel()
Andreas Müller
05:47 PM Revision 0d1aca12 (cdmlib): cleanup
Andreas Müller
05:33 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
Andreas Müller wrote:
> For "Section" the type is "InProceedings" now which is generally false. We should use "Gener...
Andreas Müller
05:26 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
I got the following NPE when playing around with the dialog:
~~~
last remote method : http://test.e-taxonomy.eu...
Andreas Müller
05:25 PM bug #8547 (Feedback): Default type of a newly created inReference should depend on the type of th...
For "Section" the type is "InProceedings" now which is generally false. We should use "General" as before or even bet... Andreas Müller
04:24 PM feature request #5795 (Closed): [DISCUSS] Do we need comb. ined. as a nomenclatural status?
It has been added now. So I close the ticket. Andreas Müller
04:23 PM feature request #6589 (Closed): Handle protologue as original source with URI link
I think we can close this ticket. Andreas Müller
04:21 PM bug #8326 (Closed): update labels for is blocking name and is isonym
Andreas Müller
04:18 PM bug #9335 (Closed): termTree webservice response misses titleCache
Andreas Kohlbecker
03:40 PM bug #9335 (In Progress): termTree webservice response misses titleCache
Andreas Kohlbecker
02:31 PM bug #9335 (Feedback): termTree webservice response misses titleCache
There were no changes/commits for long time on the above tickets. So I don't think it is related.
Maybe related to...
Andreas Müller
02:20 PM bug #9335 (Closed): termTree webservice response misses titleCache

1. termTree webservice response misses the titleCache field
1. ~~there is evidence for that the order of the terms...
Andreas Kohlbecker
04:14 PM bug #9124 (Closed): Altitude feature should have [m] as measurement unit by default
Andreas Müller
04:14 PM bug #9124: Altitude feature should have [m] as measurement unit by default
I expect this to work so I close the ticket. Andreas Müller
03:53 PM bug #9124: Altitude feature should have [m] as measurement unit by default
I tested on test and integration. The result looks fine. But we should also run on production once after the release ... Andreas Müller
04:13 PM task #9062 (Closed): Remove StatisticalMeasurementValue.value_old
Is fixed. Andreas Müller
04:11 PM task #9082 (Closed): Update script for old empty Partials handling
Andreas Müller
04:07 PM Revision 2347bf25 (cdmlib): ref #9335 creating fallback representation for Terms in TermBaseBeanP...
Andreas Kohlbecker
04:06 PM task #9094 (Closed): Update script to update TaxonNode.source from IdentifiableSource to Descript...
This is fixed Andreas Müller
04:00 PM task #9120: Update script for flowering period supports temporal data
~~~sql
SELECT *
FROM DefinedTermBase dtb
WHERE dtb.supportedDataTypes LIKE '%#TED#%'
~~~
Andreas Müller
03:59 PM task #9120 (Closed): Update script for flowering period supports temporal data
This is fixed on test and integration databases. Andreas Müller
03:55 PM feature request #9121 (Closed): Add abbreviations to Feature
I think we can close this ticket. Looks like it works. We could test on production, but as it not really critical, th... Andreas Müller
03:50 PM bug #9267: No sec reference for move change Synonym to accepted Taxon
By the way, as the above action is a taxon split, in future there will be the need of more user interaction during th... Andreas Müller
03:42 PM bug #9267 (Feedback): No sec reference for move change Synonym to accepted Taxon
The above requirement works as expected but I do not fully agree to the requirement. I think we discussed this some t... Andreas Müller
03:49 PM Revision d8001ede (cdm-dataportal): ref #9335 using term representation instead of titleCache
Andreas Kohlbecker
03:48 PM Revision f86bb6df (cdm-dataportal): removing before protologue icon to conform to test assertions§
Andreas Kohlbecker
03:45 PM Revision f9a4a64f (cdmlib): ref #9335 creating fallback representation for Terms in TermBaseBeanP...
Andreas Kohlbecker
03:43 PM Revision 82885917 (cdmlib): ref #9335 creating fallback representation for Terms in TermBaseBeanP...
Andreas Kohlbecker
02:01 PM feature request #9282: Add nomenclatural standing
This generally works and can be closed. A final update script still needs to run to change handling of nom. confus. a... Andreas Müller
01:57 PM feature request #4644 (New): json lib incorrectly serializes values containig the characters [, ]...
the above mentioned commit had to be reverted, so this issue is open again Andreas Kohlbecker
01:29 PM Revision a75434dd (cdm-vaadin): aqdapting to RegistrationDTO typifiedName as non-property
Andreas Kohlbecker
12:52 PM Revision f2198885 (cdmlib): ref #9265 removing NomenclaturalSourceBeanProcessor since it causes m...
Andreas Kohlbecker
12:51 PM task #6591 (Closed): Use name used in source for original spelling
I think this works and can be closed. Andreas Müller
12:49 PM Revision 0188f3d8 (cdmlib): typo
Andreas Kohlbecker
12:45 PM Revision 9c96ba36 (cdm-dataportal): ref #9265 reverting to old nomRef retrival strategy and fixin...
Andreas Kohlbecker
12:45 PM bug #8776 (New): Open issues for TermCollection.allowDuplicates handling in TaxEditor
Now the duplicates are checked on editor side and the message dialog shows which terms can not be added because they ... Katja Luther
11:38 AM bug #8776 (In Progress): Open issues for TermCollection.allowDuplicates handling in TaxEditor
Looks like this is partly fixed already (at least first part of first issue). As it is related to #8774 we should try... Andreas Müller
12:44 PM Revision a3e8d11d (taxeditor): ref #8774: show which terms are duplicates in dialog
Katja Luther
12:36 PM task #5856 (Rejected): [DISCUSS] Consider implemeting additional name relationships
So I mixed it up. This is on implementation in **dataportal**.
However, I think if name relationships are all show...
Andreas Müller
12:21 PM task #3967 (Duplicate): Rethink original spelling strategy
This is a duplicate for #6591 Andreas Müller
12:06 PM feature request #9194 (Closed): Make RelationshipBase and NomenclaturalStatus reference OriginalS...
This is fixed. I checked the update script result against some test databases. Looks ok (for hybrid relations I did n... Andreas Müller
11:58 AM Revision 8bc96896 (cdm-dataportal): Revert "ref #9265 getting citationDetail from NomenclaturalSo...
This reverts commit d5de0b1f6ed6901d71ccdb8a5a9b44805f907bf0. Andreas Kohlbecker
11:49 AM Revision c9d0cb80 (taxeditor): ref #8774: update of termtree editor after creating/removing tree
Katja Luther
11:35 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Andreas Müller wrote:
> > The duplicate check should be done when adding the term not only ...
Andreas Müller
11:22 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Andreas Müller wrote:
> > It is now possible to open 2 term tree Editors of the same type. ...
Katja Luther
11:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Andreas Müller wrote:
> > Can we still Change the menu that way that we have Vocabularies i...
Katja Luther
11:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Similar to the duplicates issue a term tree can be "flat". In this case adding a child to a ...
Katja Luther
09:23 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Similar to the duplicates issue a term tree can be "flat". In this case adding a child to a term node should not be a... Andreas Müller
09:20 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> The duplicate check should be done when adding the term not only when saving it.
>
> this...
Andreas Müller
09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
There is still camle case in the label
![](picture539-1.png)
Andreas Müller
08:52 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named...
Andreas Müller
08:51 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
Andreas Müller
08:47 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> It is now possible to open 2 term tree Editors of the same type. This is not wanted as a ter...
Andreas Müller
08:38 AM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
When moving a term up in feature tree via d&d
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem...
Andreas Müller
11:20 AM Revision 695b1de9 (taxeditor): remove camel case
Katja Luther
11:12 AM feature request #9307 (Closed): Preferences for display of termtrees and entries
Andreas Müller
09:11 AM feature request #9307: Preferences for display of termtrees and entries
I guess this is for final review again. Andreas Müller
08:45 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries
Applied in changeset commit:taxeditor|9d517193984ee588d4ee88484ddc791710ce613c. Katja Luther
08:41 AM feature request #9307: Preferences for display of termtrees and entries
The functionality itself works. So, when the label is fixed, the ticket can be closed. Andreas Müller
08:32 AM feature request #9307 (Feedback): Preferences for display of termtrees and entries
The label still does not work
![](picture921-1.png)
Andreas Müller
11:07 AM Revision 14417ce8 (taxeditor): ref #8774: move all term editor menu items to vocabularies
Katja Luther
10:55 AM Revision 0307d72a (taxeditor): ref #8774: open termTree editors only once
Katja Luther
10:52 AM Revision 6b891987 (cdmlib): code cleaning and improving documentation
Andreas Kohlbecker
10:51 AM Revision 2315a55d (cdmlib): RegistrationDTO: typifiedName as non-property
Andreas Kohlbecker
10:21 AM Revision 06fba5d3 (cdm-dataportal): typo
Andreas Kohlbecker
09:09 AM bug #9287: Show term details in details view of term tree editor
Maybe we do not need to load the data with the initial DTO but asynchronously when ever it is needed. Just in case lo... Andreas Müller
08:55 AM bug #9287: Show term details in details view of term tree editor
As this is related to #8774 I move it to current milestone as we should implement it soon (might also be an interesti... Andreas Müller
08:45 AM Revision 9d517193 (taxeditor): fix #9307: add missing translation#
Katja Luther
08:20 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Another layout issue somehow related: In external link, can we move the URI to the top and the type below URI? URI is... Andreas Müller
08:17 AM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced ob...
But it should be adapted for all single sources like for TaxonNode.source. So indentation is needed everywhere, excep... Andreas Müller
08:14 AM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
Yes, this looks much better. Only for nom. sources "more" is still bold. Can you adapt it there, too? Andreas Müller

11/26/2020

04:02 PM Revision 9c6a5661 (taxeditor): smaller layout issue in specimenSelectionDialog for character matrix
Katja Luther
03:46 PM Revision 52d904ba (taxeditor): remove protologue detail files
Katja Luther
03:45 PM Revision e5df12cf (taxeditor): remove merge comment
Katja Luther
02:58 PM Revision 96a59002 (taxeditor): merge issues
Katja Luther
02:54 PM Revision b1a6925c (taxeditor): ref #9299: layout issues
Katja Luther
02:54 PM Revision aab656a8 (taxeditor): layout issues for single source elements
Katja Luther
02:27 PM bug #9334 (New): Show error message when feature tree can not be shown because of dirty data
see #8774#note-32 Katja Luther
02:22 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
For the missing feedback I create a new ticket, can we close this ticket? Katja Luther
02:21 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced ob...
I think this is fixed now. Please review. Katja Luther
01:05 PM Revision aae9aefe (cdm-dataportal): spanish translation Type->Tipo
Andreas Kohlbecker
12:54 PM task #9266 (Closed): Remove protologue section from TaxEditor
Andreas Müller
09:32 AM task #9266 (Resolved): Remove protologue section from TaxEditor
Katja Luther
09:31 AM task #9266: Remove protologue section from TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > >
> > > Maybe we could even use the above preference to show or n...
Katja Luther
11:17 AM Revision beb7ecbe (cdm-dataportal): ref #9265 adapting test to improved nomRef citation string ge...
Andreas Kohlbecker
11:12 AM Revision f00c6f98 (cdm-dataportal): ref #9279 adapting class attribute handling to TypeDesignatio...
Andreas Kohlbecker
10:21 AM feature request #9225 (Closed): Make TaxonName.nomenclaturalSource a new DescriptionElementSource...
yes I also think that this ticket can be closed.
There might be still some cases in which LIEs might pop up but thes...
Andreas Kohlbecker
09:31 AM feature request #9333 (New): Preference for display of protologue section in nomenclatural source...
from #9266:
The protologue section should also be removed from local and DB preferences I guess as it probably has...
Katja Luther

11/25/2020

10:48 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Car...
so can we close the ticket? Andreas Müller
10:46 PM feature request #9192 (Feedback): Layout issues for source in taxonnode details
Are these still open issues. To me it looks like most of it is solved somehow. But maybe I do not understand some of ... Andreas Müller
10:40 PM bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects
... for TaxonNodes.source we should keep indentation of "more" as it is followed by "Related persons" Andreas Müller
10:36 PM bug #9199 (Feedback): Adapt TaxEditor to switch to originalSource for remaining single sourced ob...
Can we adapt single source layout according to nomenclatural source layout?
So we
* move External Link up and...
Andreas Müller
09:54 PM feature request #9332 (Closed): Rename TypeDesignationBase.source to .designationSource
as simple "source" creates confusion as there are also the general sources attached to TypeDesignationBase. Andreas Müller
09:37 PM feature request #6581 (Closed): Make all microreferenced references OriginalSources
I think we can close this ticket now. Please reopen if you think there is still something open that is not yet handle... Andreas Müller
09:32 PM feature request #9331 (Closed): Distinguish DescriptionElementSource and NamedSource
... NamedSource is now used in more cases and DescriptionElementSource should have a backlink to DescriptionElement
...
Andreas Müller
09:24 PM task #9330 (Closed): Remove "NomenclaturalSource" from OriginalSourceType
As nomenclatural sources now have there own subclass PrimaryTaxonomicSource is enough for nomenclatural sources.
H...
Andreas Müller
09:14 PM Revision dba500e8 (cdmlib): ref #6623 include microReference in DefaultReferenceCacheStrategy.get...
Andreas Müller
08:59 PM bug #6623 (Resolved): formatter for bibliografic citations with citationDetail
This should be something like DefaultReferenceCacheStrategy.getNomenclaturalCitation(Reference, String) but for bibli... Andreas Müller
08:58 PM Revision da04d3c7 (cdmlib): ref #6623 include microReference in DefaultReferenceCacheStrategy.get...
Andreas Müller
08:55 PM Revision 3107f6d9 (cdmlib): cleanup
Andreas Müller
08:16 PM feature request #9194 (Resolved): Make RelationshipBase and NomenclaturalStatus reference Origina...
I guess this is fixed as we use it already in TaxEditor Andreas Müller
08:10 PM feature request #9329 (Closed): Implement sec reference as original source in dataportal
This is a remaining issue from #9222 as model change is required first.
Also have in mind to adapt jsonConfigura...
Andreas Müller
08:08 PM feature request #9328 (Closed): Adapt Editor to switch to originalSource for taxon secundum
This is the remaining issue from #9199.
Requires model implementation #9327
Andreas Müller
08:07 PM feature request #9327 (Closed): Make taxon secundum reference an original source
copied from #6581 Andreas Müller
08:04 PM feature request #9326: Show all authors in bibliographic references
The third screen shot shows a (new?) truncation of a long title. Looks not bad but is not correct. In this case Fragi... Wolf-Henning Kusber
08:02 PM feature request #9326 (Resolved): Show all authors in bibliographic references
In PhycoBank it is necessary to show a complete reference including all bibliographical authors. This is also relevan... Wolf-Henning Kusber
08:01 PM Revision 22ac5dcd (cdmlib): change name for TaggedEntityReference
Andreas Müller
07:29 PM feature request #9325 (Duplicate): Enable section in specimen type designation
The idea is to select or create a section for the typification (of the name we are coming from). Might be necessary f... Wolf-Henning Kusber
07:15 PM feature request #9324 (Closed): Enable designation reference editing in name type designation

Main issues:
6: enable to select an available section (new names) or create a new section (for e.g. lecto- or n...
Wolf-Henning Kusber
06:35 PM bug #9322: Remove invalid designation taxon relationship
Find possible cases:
~~~sql
SELECT tr.id, tb1.titleCache fromx , tb2.titleCache tox, tr.*
FROM TaxonRelationship...
Andreas Müller
02:38 PM bug #9322 (Closed): Remove invalid designation taxon relationship
Invalid designations are simply names which are not valid and therefore are called "designations" only not "names".
...
Andreas Müller
06:21 PM Revision 7f5fe60c (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relations...
Andreas Müller
06:15 PM Revision a647b46a (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relations...
Andreas Müller
06:10 PM Revision 86b95854 (cdm-dataportal): ref #9279 using taggedText in TypeDesignationDTO in portal
Andreas Kohlbecker
06:08 PM Revision d8417735 (cdmlib): ref #9279 TypeDesignationDTO basing on new class RepresentableEntit...
Andreas Kohlbecker
06:07 PM Revision 562f293f (cdmlib): ref #9265 making use of nomenclaturalSource->nomenclaturalCitation - ...
Andreas Kohlbecker
05:53 PM Revision adbd3997 (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relations...
Andreas Müller
05:49 PM Revision d9853ce6 (cdm-vaadin): cleanup
Andreas Müller
05:49 PM Revision 8cf3ca0a (cdm-vaadin): ref #9322 adapt vaadin to removed invalid designation relationship
Andreas Müller
05:46 PM Revision e2771053 (cdm-dataportal): ref #9279 adding TypeDesignationDTO to cdm_ws_base_uri()
Andreas Kohlbecker
05:46 PM Revision 11358be4 (taxeditor): ref #9322 adapt TaxEditor to removed invalid designation relationship
Andreas Müller
05:25 PM Revision e4c8c2c8 (cdmlib): cleanup
Andreas Müller
05:25 PM Revision 1ffd1c27 (cdmlib): ref #9322 remove invalid designation relationship from cdmlib
Andreas Müller
05:09 PM Revision 4fa58f06 (cdm-dataportal): ref #9265 making use of nomenclaturalSource->nomenclaturalCit...
Andreas Kohlbecker
05:08 PM feature request #4644 (Rejected): json lib incorrectly serializes values containig the characters...
this is no longer relevant since we no longer need to get the microreference separately commit:aa06c1f1a2
The hack...
Andreas Kohlbecker
05:06 PM Revision aa06c1f1 (cdmlib): ref #9265 introducing NomenclaturalSourceBeanProcessor to add nomencl...
Andreas Kohlbecker
03:16 PM task #9222 (Resolved): Adapt dataportal to switch to originalSource for remaining single sourced ...
this should be mainly fixed, only needs final review Andreas Kohlbecker
03:06 PM task #8275 (Worksforme): [DISCUSS] Relationship between invalid designations and invalid names / ...
AM:
Es gibt noch das Ticket #8275 , welches ich erstellt habe, als ich noch nicht so genau wußte, was es mit der A...
Andreas Müller
03:04 PM task #8275: [DISCUSS] Relationship between invalid designations and invalid names / nom. inval.
Andreas Müller wrote:
> All invalid names (term ids may need to be adapted)
I think this is handled sufficiently ...
Andreas Müller
03:03 PM task #9265 (Resolved): Adapt dataportal to new protologue handling
Andreas Kohlbecker
03:03 PM task #9265: Adapt dataportal to new protologue handling
new ticket for discussion on display of ExternalLink.description: #9323
Andreas Kohlbecker
12:25 PM task #9265: Adapt dataportal to new protologue handling
Andreas Kohlbecker wrote:
> this is basically implemented, tests are pending.
>
> One question in advance: Extern...
Andreas Müller
03:01 PM task #9323 (New): discuss display of ExternalLink.description
ExternalLink has the property description, how should this be handled in case of the protologues? I suggest using foo... Andreas Kohlbecker
02:57 PM Revision 61e84a73 (cdmlib): ref #9265 implementing protologueLinks web service
Andreas Kohlbecker
02:53 PM Revision a8393f17 (cdm-dataportal): ref #9265 implementing test for nom-ref and protologues, also...
Andreas Kohlbecker
02:46 PM Revision c11d7e10 (cdm-dataportal): ref #9265 implementing test for nom-ref and protologues, also...
Andreas Kohlbecker
02:42 PM task #8055 (Rejected): Correct formatting for invalid designations
As Invalid Designation relationships are not supported anymore (as they are incorrect, #9322) this ticket can be clos... Andreas Müller
02:18 PM Revision 180653b7 (taxeditor): remove create/change to invalid designation handler
Katja Luther
02:14 PM Revision 99a52e55 (cdmlib): ref #9282 fix NPE in nomenclaturalStanding computation
Andreas Müller
01:51 PM Revision d5de0b1f (cdm-dataportal): ref #9265 getting citationDetail from NomenclaturalSource
Andreas Kohlbecker
01:22 PM feature request #9321 (New): Make availability of pro-parte synonyms configurable
Mostly pro parte synonyms should not be created in TaxEditor, therefore it should be configurable whether the menu it... Katja Luther
12:25 PM Revision ceeaac02 (taxeditor): fix microreference saving
Katja Luther
12:20 PM bug #9241: replace/adapt descriptionPart in render templated
I guess this should be done shortly after the current release so I put it to the current milestone for now so we do n... Andreas Müller
12:18 PM feature request #9225: Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
Andreas Müller wrote:
> I think the vaadin test are now fixed (?). So can we close this ticket?
??
Andreas Müller
12:17 PM task #9266: Remove protologue section from TaxEditor
Katja Luther wrote:
> >
> > Maybe we could even use the above preference to show or not show the external link sec...
Andreas Müller
12:12 PM feature request #9320 (In Progress): Move additional publication information to nomenclatural source
copied from #6589 (see discussion starting at #6589#note-24)
Currently it is stored as name description but the da...
Andreas Müller
12:04 PM feature request #6589: Handle protologue as original source with URI link
Andreas Kohlbecker wrote:
> Interesting, that the UUID is different from that in the data portal code ('cb2eab09-6d9...
Andreas Müller
10:58 AM feature request #6589: Handle protologue as original source with URI link
also in
* cdm_production_cichorieae
* cdm_production_euromed
* cdm_production_euromed_caucasus
* cdm_productio...
Andreas Kohlbecker
10:44 AM feature request #6589: Handle protologue as original source with URI link
Interesting, that the UUID is different from that in the data portal code ('cb2eab09-6d9d-4e43-8ad2-873f23400930').
...
Andreas Kohlbecker
10:37 AM Revision 8d86ce45 (taxeditor): smaller layout issues and avoid NPE
Katja Luther
09:42 AM Revision 1ac5fff7 (cdmlib): avoid NPE and CCE
Katja Luther

11/24/2020

11:04 PM Revision 1918f07a (cdmlib): ref #9279 fix TypedEntity for source
Andreas Müller
10:36 PM feature request #6589: Handle protologue as original source with URI link
Additional Publications do definetely exist, e.g. in E+M or caryo_spp
~~~sql
SELECT db.DTYPE, db.id, feature.titl...
Andreas Müller
09:54 PM feature request #6589: Handle protologue as original source with URI link
I found a special case in the data portal code for the feature:
~~~
UUID_ADDITIONAL_PUBLICATION = 'cb2eab09-6d9d-...
Andreas Kohlbecker
10:34 PM task #9265 (Feedback): Adapt dataportal to new protologue handling
this is basically implemented, tests are pending.
One question in advance: ExternalLink has the property `descript...
Andreas Kohlbecker
10:26 PM Revision df2b235a (cdm-dataportal): ref #9265 switching to NomenclaturalSource.links for protolog...
Andreas Kohlbecker
10:16 PM Revision f9b5740e (cdm-dataportal): ref #9265 switching to NomenclaturalSource.links for protologues
Andreas Kohlbecker
10:12 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable
Reference selectable for basionym, replaced synonym, and validation. The ticket can be closed. Wolf-Henning Kusber
05:18 PM bug #9318 (Resolved): TaxonNameEditor: nomenclatural reference no longer selectable
this should be fixed now, can you please review? Andreas Kohlbecker
05:17 PM bug #9318 (In Progress): TaxonNameEditor: nomenclatural reference no longer selectable
Andreas Kohlbecker
05:13 PM bug #9318 (Duplicate): TaxonNameEditor: nomenclatural reference no longer selectable
Andreas Kohlbecker
05:10 PM bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable
this is actually a bug introduced with #9229 - implementation was incomplete.
Andreas Kohlbecker
04:49 PM bug #9318 (Closed): TaxonNameEditor: nomenclatural reference no longer selectable
after the changes that turn the nomenclatural reference into a `DescriptionElementSource` (#9225, #6581) the nomencla... Andreas Kohlbecker
09:58 PM Revision 27a6e8d7 (cdmlib): ref #9279 add TypedEntities to TypeDesignationDTO
Andreas Müller
09:57 PM Revision 2fb2834c (cdmlib): cleanup
Andreas Müller
09:45 PM Revision a0ab64df (cdm-dataportal): ref #9279 adapt orderdTypeDesig type in cdmdataportal
Andreas Müller
08:55 PM Revision d38359c9 (cdm-vaadin): ref #9279 fix type and improve generics for TypedEntityReference...
Andreas Müller
08:51 PM Revision 47f6500b (cdmlib): ref #9279 use RegistrationDTO instead of TypedEntityReference for Typ...
Andreas Müller
08:36 PM Revision 7f1705a9 (cdmlib): cleanup
Andreas Müller
07:30 PM Revision 6d344620 (cdmlib): ref #9279 fix make WorkingSet a Map again and cleanup
Andreas Müller
07:04 PM task #9319 (New): adapt name render templates to new nomenclatural source which also contain prot...
1. The render templates still refer to the old model in which protologues have been handled via name descriptions.
2...
Andreas Kohlbecker
06:56 PM Revision 32955f5b (cdmlib): ref #9279 make WorkingSet a Map again and fix typo in RegistrationDTO...
Andreas Müller
06:23 PM Revision cbe1466f (cdm-vaadin): ref #9279 improve generics for TypedEntityReference (vaadin)
Andreas Müller
06:23 PM Revision de5e3f7c (cdm-vaadin): ref #9279 extract TypeDesignationWorkingSet as top level class an...
Andreas Müller
06:16 PM Revision c386f139 (cdmlib): ref #9279 improve generics for TypedEntityReference
Andreas Müller
05:31 PM Revision 7471539c (cdmlib): ref #9279 separate formatting from TypeDesignationSetManager and extr...
Andreas Müller
05:17 PM Revision c1c4b55f (cdm-vaadin): ref #9318 fixing problem with NomenclaturalSource selection in Ta...
Andreas Kohlbecker
05:12 PM feature request #9229 (In Progress): TaxonNameEditor: use NomenclaturalStatusDTO to avoid data lo...
reopening since this implementation is incomplete, see #9318 Andreas Kohlbecker
03:14 PM Revision a5a8be33 (taxeditor): ref #8769: move source ref to configuration wizard
Katja Luther
03:00 PM Revision 842cd0b7 (cdmlib): cleanup
Andreas Müller
02:58 PM Revision 5c5865f6 (taxeditor): ref #8769: structure the configuration elements - add source
Katja Luther
02:39 PM feature request #8769: Biocase import configuration should be shown when clicking on import button
the wizard is structured in the way described above. Katja Luther
12:55 PM feature request #8769 (In Progress): Biocase import configuration should be shown when clicking o...
Katja Luther
12:55 PM feature request #8769: Biocase import configuration should be shown when clicking on import button
now the configuration dialog is opened with every click on import and the classifiction is added to the config wizard. Katja Luther
02:36 PM Revision a63e71bd (taxeditor): ref #8769: structure the configuration elements
Katja Luther
02:35 PM Revision 5ca40190 (cdmlib): ref #9279 remove redundant typifiedNameRef (TypedEntityReference) an...
Andreas Müller
12:57 PM Revision 19793be6 (cdmlib): cleanup
Andreas Müller
12:56 PM Revision f1145594 (cdmlib): ref #9282 adapt dataset.dtd to NomenclaturalStanding
Andreas Müller
12:23 PM Revision 7b5149a3 (cdmlib): preliminary fix compile error in SchemaUpdater_5185_5186
Andreas Müller
12:18 PM Revision 9d43b70b (cdmlib): cleanup
Andreas Müller
12:16 PM Revision c14761c5 (cdmlib): ref #9272 remove invalid state from nom. ambig. and nom. confus.
Andreas Müller
12:13 PM Revision 0edc55f4 (cdmlib): ref #9272, ref #5794 adapt taxon ordering to nomenclatural standing
Andreas Müller
12:13 PM Revision 1d9b1314 (cdmlib): cleanup
Andreas Müller
11:50 AM Revision e84897d0 (taxeditor): adapt biocase import views
Katja Luther
11:44 AM Revision 3370888f (cdmlib): add termNodeDto to list of terms of termTreeDto
Katja Luther
11:36 AM Revision 8ae425dd (cdmlib): add classification to config string
Katja Luther
11:00 AM Revision d0b9755a (taxeditor): ref #9266: layout issues
Katja Luther
10:37 AM feature request #5795: [DISCUSS] Do we need comb. ined. as a nomenclatural status?
The status has been implemented a couple of years ago so Andreas Müller
08:54 AM Revision 196b09e5 (taxeditor): ref #9266: remove more section in nomenclatural source and keep pr...
Katja Luther
08:38 AM Revision ccdf755b (taxeditor): remove max number of elements in combo boxes
Katja Luther

11/23/2020

10:12 PM Revision 9e82c512 (cdmlib): ref #9279 remove redundant string and TaggedText computing and fix po...
Andreas Müller
10:10 PM Revision 88317626 (cdmlib): cleanup
Andreas Müller
09:14 PM Revision 317bee5c (cdmlib): cleanup
Andreas Müller
08:24 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor
As this is a milestone interal ticket only I remove the target version Andreas Müller
01:04 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
confirmed! the commit:374e76ca85 for #6581 fixes this issue Andreas Kohlbecker
04:06 PM task #9265 (In Progress): Adapt dataportal to new protologue handling
There is no specific web service for protologues so only the dataportal needs to be adapted. Andreas Kohlbecker
02:10 PM bug #8833 (Duplicate): distribution editor: Exception when filtering by taxon
tested at the example of http://test.e-taxonomy.eu/cdmserver/cichorieae/app/distribution#!distGrid
could not repro...
Andreas Kohlbecker
01:17 PM bug #9317 (New): Handle NameTypeDesignations on name basis not on homotypic group basis in outputs
WGB:
Bei Gattungen und infragenerischen Rangstufen, die auf anderen Namen basieren wird [...] eine Kombination (Ar...
Andreas Müller
09:56 AM feature request #9316: Add preference to define number of initialy shown elements in drop down menus
As such dropdowns exist at many places we should have a predicate like "number of rows in dropdown" and define which ... Andreas Müller
08:54 AM feature request #9316 (New): Add preference to define number of initialy shown elements in drop d...
mail ERS:
Bei der Auswahl des Distribution Status im Details View habe ich ein scroll-down-Menü, welches mir aber ...
Katja Luther
09:44 AM bug #6757 (Worksforme): AbcdImportWizard has all configurator flags set to false
no, this is fixed in the meantime Katja Luther

11/20/2020

11:09 PM bug #9223 (Resolved): make changes of nomenclatural references detectable again in TaxonGraphBefo...
Andreas Müller
11:08 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
Works as expected Andreas Müller
11:07 PM feature request #9299 (Feedback): Add LSID to author and reference details
In general this is fixed.
Only issues:
* can we move URI above DOI and LSID in Reference Details View.
* can ...
Andreas Müller
11:03 PM bug #6947 (Closed): Incorrect error for LSID field
This works as expected Andreas Müller
10:58 PM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
This is fully fixed Andreas Müller
10:47 PM feature request #9282 (Resolved): Add nomenclatural standing
still need to update in cdmlight Andreas Müller
07:07 PM feature request #9282 (In Progress): Add nomenclatural standing
Andreas Müller
10:44 PM bug #9312 (Resolved): NullPointerException (NPE) in TaxonNamePopupEditor
This should be fixed with the current update script. You need to reinstall a version prior to 5.18.0 and run the upda... Andreas Müller
03:34 PM bug #9312: NullPointerException (NPE) in TaxonNamePopupEditor
this seems to be due to a problem in the model upgrade script which misses to handle NomeclaturalSources correctly an... Andreas Kohlbecker
01:51 PM bug #9312 (Closed): NullPointerException (NPE) in TaxonNamePopupEditor
beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s... Andreas Kohlbecker
10:07 PM feature request #5795 (Resolved): [DISCUSS] Do we need comb. ined. as a nomenclatural status?
Andreas Müller
10:00 PM Revision e394d81a (cdmlib): ref #6591 fix SingleTermRemover
Andreas Müller
09:18 PM Revision 53ffcb3d (cdmlib-apps): ref #9282 adapt app-import to nomenclaturalStanding
Andreas Müller
09:17 PM Revision 88a917f1 (cdmlib-apps): ref #6591 adapt original spelling in app-import
Andreas Müller
07:05 PM Revision af1ee281 (taxeditor): ref #9282 adapt TaxEditor to nomenclatural standing
Andreas Müller
06:32 PM Revision 8d7efe50 (taxeditor): update taxeditor to v5.18.5
Andreas Müller
06:26 PM Revision 358b5ee6 (cdm-vaadin): update vaadin to v5.18.5
Andreas Müller
06:23 PM Revision 14a6a2a9 (cdmlib): fix endSchemaVersion in SchemaUpdater_5184_5185
Andreas Müller
06:20 PM task #9315 (Closed): Remove old single source citation and microCitation columns
Include all single sources from #6581
For nomenclatural source it may look like
~~~sql
//#9315 remove ...
Andreas Müller
06:17 PM task #9314 (New): Swap 'is conserved against'
We may think about swapping the direction of "is conserved against" .
This might be an advantage when evaluating t...
Andreas Müller
06:09 PM Revision 1f256a93 (cdmlib): update cached model to 5.18.5
Andreas Müller
06:08 PM bug #8859 (Closed): RegistrationItemNameAndTypeButtons invalid regex pattern
Andreas Kohlbecker
06:08 PM bug #8859 (Resolved): RegistrationItemNameAndTypeButtons invalid regex pattern
Applied in changeset commit:cdm-vaadin|2deb1814c68bd161651f888988f74b04e659a928. Andreas Kohlbecker
06:08 PM Revision 2deb1814 (cdm-vaadin): fix #8859 quoting literal string before use in regex function
Andreas Kohlbecker
06:07 PM Revision 374e76ca (cdmlib): ref #6581 fix update script for nomenclatural sources / nomenclatural...
Andreas Müller
06:07 PM Revision 1712450e (cdmlib): finalize update script vor version 5.18.4
Andreas Müller
06:07 PM Revision 11a38b45 (cdmlib): ref #9311 adapt name parser to updated nom status labels
Andreas Müller
06:07 PM Revision cc259f91 (cdmlib): minor
Andreas Müller
06:07 PM Revision 0f9c4a8b (cdmlib): ref #9311 adapt TermRepresentationUpdater for idInVoc updating
Andreas Müller
06:07 PM Revision 8b5c5b10 (cdmlib): ref #9272 add 5 new nomenclatural status types
Andreas Müller
06:06 PM Revision 9f381a15 (cdmlib): ref #6591 Use TaxonName.nomSource.NameUsedInSource for original spelling
Andreas Müller
06:06 PM Revision f9404583 (cdmlib): ref #9282 adapt NomenclaturalStatusType.csv to nomenclaturalStanding
Andreas Müller
06:06 PM Revision bc07028c (cdmlib): ref #9282 some final fixes and javadoc updates for NomenclaturalStatu...
Andreas Müller
06:06 PM Revision d99f9c25 (cdmlib): ref #9282 adapt some nomenclatural standings in test dataset and fix/...
Andreas Müller
06:06 PM Revision 13e8b7f4 (cdmlib): ref #9311 update labels in test terms
Andreas Müller
06:06 PM Revision a3a00b7a (cdmlib): ref #9282 add NomenclaturalStanding and INomenclaturalStanding and re...
Andreas Müller
06:06 PM Revision 54aff43a (cdmlib): ref #9311 update script for nom status and name rel term label updates
Andreas Müller
06:06 PM Revision 62ea9850 (cdmlib): cleanup
Andreas Müller
05:08 PM feature request #9224 (Closed): openlayers map handles server error per layer and presents a user...
fully solved Andreas Kohlbecker
05:01 PM task #6591 (Resolved): Use name used in source for original spelling
Andreas Müller
04:48 PM bug #9313 (Resolved): LazyInitializationException (LIE) in TaxonNamePopupEditor
please review once #9312 is also solved - needs prior communication with the dev team to check that the data base is ... Andreas Kohlbecker
01:58 PM bug #9313 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor
beim Testen kam ich auf ein Problem, das vielleicht am System, vielleicht an meinen Dateneingaben liegt. Vielleicht s... Andreas Kohlbecker
04:46 PM Revision 004972d5 (cdm-vaadin): ref #9313 further init strategy extension to adapt to new Origina...
Andreas Kohlbecker
04:45 PM feature request #9272 (Resolved): Add missing nomenclatural status
Finally we added
protected
in sched.
pro syn.
orth. var. (as status)
comb. ined.
Andreas Müller
03:01 PM bug #9311 (In Progress): Update some (abbrev) labels for nomenclatural status types
Andreas Müller
12:40 PM bug #9311 (Closed): Update some (abbrev) labels for nomenclatural status types
opus. utique oppr. => op. utique oppr.
nom. orth. cons. => orth. cons.
nom. orth. cons. prop. => orth. cons. prop.
...
Andreas Müller
01:05 PM bug #9230 (Closed): Type in preparation of a published name displayed in PhycoBank Portal Name Page
Andreas Kohlbecker
09:34 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
Gomphonemopsis ligowskii is published and has a holotype.
I inserted a unpublished test reference Kusber in Zeitschr...
Wolf-Henning Kusber
09:17 AM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
Checked this example. The issue is perfectly solved. Before we close the ticket, I want to find an example with mixed... Wolf-Henning Kusber
11:51 AM Revision dea3754f (taxeditor): ref #9307: add preference page for termtrees and adapt label provider
Katja Luther
11:51 AM feature request #9307 (Resolved): Preferences for display of termtrees and entries
please review Katja Luther
11:06 AM Revision aa2fb1b5 (cdmlib): correct handling of doubtful synonyms
Katja Luther
11:02 AM Revision 68bfcb66 (cdmlib): avoid NPE in Typedesignation Manager for sources without reference
Katja Luther
10:54 AM Revision 43e9fd92 (taxeditor): move condensedDistribution preference to distribution preferences
Katja Luther
08:40 AM bug #9310 (New): Deleting a taxon with all synonyms fails for the basionym
The synonym set as basionym is not deleted because the check for basionym prevents the delete. There should be anothe... Katja Luther
08:32 AM feature request #7797: Second nomenclatural reference
AM:
... Eine Idee wäre, den Text dieser zweiten Referenzen statt in die NameFacts in die neue Nomenclatural Sourc...
Andreas Müller

11/19/2020

07:29 PM Revision c23a56d8 (cdm-dataportal): harmonizing loading indicator color with other openlayers con...
Andreas Kohlbecker
07:05 PM Revision fc4f8c8d (cdm-dataportal): ref #9224 reporting WMS tile loading errors per layer in the ...
Andreas Kohlbecker
05:14 PM bug #9184 (Closed): WSOD in advanced search cdm_dataportal/search
After re-indexing the problem does no longer occur.
discrepancies of the search index with the database could be m...
Andreas Kohlbecker
01:38 PM bug #9184: WSOD in advanced search cdm_dataportal/search
This problems seems to be caused by search indices which are not in sync with the cdm db.
The data portal now igno...
Andreas Kohlbecker
05:06 PM Revision 78fb1106 (cdm-dataportal): fix for unavailable custom_placeholder_image
Andreas Kohlbecker
03:38 PM feature request #9309: Improve handling of specimen without titlecache in cdmLight
The problem here is not primarily a cdmlight issue but an issue of missing title cache strategy (formatter) for Deriv... Andreas Müller
01:55 PM feature request #9309 (New): Improve handling of specimen without titlecache in cdmLight
copied from #9262:
Ausgabe -title cache generation not implemented-. Das kommt, soweit ich sehe, nur bei specimens...
Katja Luther
03:09 PM Revision 72408704 (cdmlib): fix presence questionable handling in test terms
Andreas Müller
02:12 PM Revision dee298b3 (cdmlib): Update javadoc for CdmPreference related classes.
Andreas Müller
02:01 PM bug #9199 (Resolved): Adapt TaxEditor to switch to originalSource for remaining single sourced ob...
This is fixed for all sources listed above, for sec reference I create a new ticket or we create a new one when the s... Katja Luther
01:58 PM feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Car...
all issues are implemented except the specimen without titleCache, therefore a new ticket exist (#9309) Katja Luther
01:56 PM feature request #9262 (Resolved): Several open issues for cdmlight export related to Cactaceae an...
Katja Luther
01:36 PM Revision 04b1e433 (cdm-dataportal): ref #9184 ignoring null entities in lucene search result and ...
Andreas Kohlbecker
01:32 PM Revision cb6764ac (taxeditor): ref #9262: adapt cdmlight preference handling to renamed predicate
Katja Luther
12:15 PM task #9266: Remove protologue section from TaxEditor
Andreas Müller wrote:
> The protologue section should also be removed from local and DB preferences I guess as it pr...
Katja Luther
12:11 PM feature request #9297 (Resolved): Improve name of zip file for cdmLightExport
please review Katja Luther
12:10 PM feature request #9299 (Resolved): Add LSID to author and reference details
please review Katja Luther
11:50 AM Revision a33cb038 (cdmlib): PreferencePredicate condensedDistributionRecipe not only for cdmLight
Katja Luther
11:47 AM Revision 3bf91ce5 (cdmlib): CondensedDistributionRecipe enum is IKeyLabel
Katja Luther
10:51 AM Revision 36ac0d5d (taxeditor): add lsid field to person details
Katja Luther
10:39 AM Revision c875d034 (taxeditor): add lsid field to reference details
Katja Luther
10:34 AM Revision 99197d76 (taxeditor): ref #9297: improve zip file name - continue
Katja Luther
10:33 AM Revision 8fd0ede6 (taxeditor): ref #8774: remember expansion state when removing feature from fea...
Katja Luther
10:26 AM Revision fb43bf21 (taxeditor): ref #9297: improve zip file name
Katja Luther
10:12 AM Revision 8d36f034 (cdmlib): revert disabling condensed distr. string and add missing presence abs...
Katja Luther
09:04 AM Revision 9a899f86 (cdmlib): disable condensed distribution string in cdmlight export test
Katja Luther

11/18/2020

04:50 PM Revision 5d62d265 (cdmlib): ref #9262: minor
Katja Luther
03:59 PM Revision 36fa3d85 (taxeditor): ref #9297: add preferences and some code cleaning
Katja Luther
03:58 PM Revision c842935a (cdmlib): ref #9262: add possibility to export condensed distribution string - ...
Katja Luther
03:56 PM Revision ddbbb621 (cdm-vaadin): ref #9308 slight improvement for type status in bold letters
Andreas Kohlbecker
03:54 PM task #9308: Supress "designated by" reference in portal in registration ListView and Registration...

Even if the plural "s" problem is fixed, there are also other problems with showing the type status in bold letters...
Andreas Kohlbecker
03:51 PM Revision 44bef338 (cdmlib): ref #9262: add possibility to export condensed distribution string
Katja Luther
02:03 PM Revision 40eb3245 (cdmlib-apps): remove methods not in use in CubaExcelImport
Andreas Müller
02:02 PM Revision 46ade909 (cdmlib-apps): replace links to trac tickets by links to redmine tickets in jav...
Andreas Müller
02:02 PM Revision 8275a22c (cdmlib-apps): cleanup
Andreas Müller
11:49 AM Revision da219650 (cdm-vaadin): ref #9290 comment on typdesignation citation problem
Andreas Kohlbecker
10:25 AM Revision 101d7930 (cdm-vaadin): cleanup
Andreas Müller
10:01 AM Revision 43dd85e9 (cdmlib): cleanup
Andreas Müller
10:01 AM Revision 138715e0 (cdmlib): replace links to trac tickets by links to redmine tickets in javadoc
Andreas Müller

11/17/2020

06:00 PM bug #9230 (Resolved): Type in preparation of a published name displayed in PhycoBank Portal Name ...
please review Andreas Kohlbecker
01:17 PM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
it is the portal/name/{uuid}/typeDesignations which misses to filter the entities Andreas Kohlbecker
05:59 PM Revision 71152358 (cdm-dataportal): ref #9230 fixing bug in test assertion
Andreas Kohlbecker
05:47 PM Revision 41dde72f (cdmlib): ref #9230 RegistrableEntityFilter function for type designations and ...
Andreas Kohlbecker
05:47 PM Revision cc665988 (cdmlib): ref #9230 RegistrableEntityFilter to centralize filter functions
Andreas Kohlbecker
03:51 PM task #9308 (New): Supress "designated by" reference in portal in registration ListView and Regist...
Andreas Kohlbecker
03:51 PM task #9308 (New): Supress "designated by" reference in portal in registration ListView and Regist...
this task has been copied from #9302
see also #9306
Also fix the dangling plural `s` of "isotypes" which is not...
Andreas Kohlbecker
10:14 AM Revision b0e51e45 (taxeditor): ref #9266: some layout issues and label renaming
Katja Luther
09:09 AM Revision fc20040c (cdmlib): ref #9204 upgrade xstream version in cdmlib
Andreas Müller
09:07 AM task #9189: Move datasource view to taxeditor.local
Is this for review? Andreas Müller
09:01 AM feature request #9307: Preferences for display of termtrees and entries
As this is related to #8774 I move it to the current milestone Andreas Müller
08:27 AM feature request #9307 (Closed): Preferences for display of termtrees and entries
Like for terms we need a preference and a preference page for how to display term trees/entries. Katja Luther

11/16/2020

05:31 PM Revision b728050e (cdm-dataportal): ref #9230 implementing test for exposure of unpublished type ...
Andreas Kohlbecker
02:44 PM task #9306: Registration result list: supress "designated by" reference in portal
example url http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/registration-search/filter?ident... Andreas Kohlbecker
02:43 PM task #9306 (Closed): Registration result list: supress "designated by" reference in portal
Andreas Kohlbecker
02:42 PM task #9306 (Resolved): Registration result list: supress "designated by" reference in portal
Applied in changeset commit:cdm-dataportal|947ee97b814df065ae6381649c29ba3a5c5bd272. Andreas Kohlbecker
02:01 PM task #9306 (Closed): Registration result list: supress "designated by" reference in portal
this task has been copied from #9302
The portal used the `summaryTaggedText` to render the entries in `compose_reg...
Andreas Kohlbecker
02:42 PM Revision 947ee97b (cdm-dataportal): fix #9306 filtering designated by reference out for registrat...
Andreas Kohlbecker
10:47 AM Revision 1d916b0b (taxeditor): ref #9266: minor
Katja Luther
10:24 AM Revision be28cd99 (taxeditor): code cleaning
Katja Luther
09:58 AM feature request #9305: Include additional TypeDesignationStatus sort order (term tree) in CDM terms
This requires that term tree can be loaded also during term loading. This in future should come from the term server ... Andreas Müller
09:54 AM feature request #9305 (New): Include additional TypeDesignationStatus sort order (term tree) in C...
For type designation status we need different orders. In dropdown menus like in TaxEditor the current order which has... Andreas Müller
09:25 AM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomencl...
As this is related to the implementation of #6581 I move it to the current milestone. Andreas Müller
09:20 AM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomencl...
AM (Original Mail): ja das war mir auch schon aufgefallen. Habe keine richtige Lösung dafür. Klar ist, wenn unter „mo... Andreas Müller
09:24 AM feature request #6581 (Resolved): Make all microreferenced references OriginalSources
This is more or less solved. Open issues hshould be moved to new tickets if not yet done. Andreas Müller
09:16 AM feature request #9304 (New): While creating new reference choosing the type first
To avoid generic references the user should have to choose the reference type first when entering a new reference.
Katja Luther
09:16 AM bug #9281: Set basionym not available for heterotypic synonyms after drag & drop
This is core functionality so we should implement it soon. Andreas Müller
09:11 AM feature request #9297: Improve name of zip file for cdmLightExport
WGB: da fände ich die erste Option (Taxon/Klassifikation zuerst) auch schöner. Andreas Müller
09:10 AM bug #9286: Re-connect and change user should be disabled if no datasource is connected yet
please review Katja Luther

11/14/2020

08:34 PM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomencl...
Please be aware that we do have a predicate for these attributes already. Better would be to implement the specific n... Andreas Müller
08:29 PM bug #8984: Registration search result list: Format display of two type specimens
At least the kommata handling might be fixed by implementations from #9279, but not sure Andreas Müller
08:15 PM task #9300: Name Page: harmonize media specimen lectotype representations
Andreas Kohlbecker wrote:
> Since the Citation part will end with a dot character, is seems incorrect to write "desi...
Andreas Müller
08:05 PM bug #9302: Phycobank related issues for TypeDesignation formatting
AM:
ich habe, wie besprochen versucht den Punkt
"The search result in phycobank currently includes citation inf...
Andreas Müller
07:14 PM bug #9302: Phycobank related issues for TypeDesignation formatting
AM: Bei der Diskussion ums Typusmodul vor ca. 2 Jahren hatten wir diskutiert und später auch implementiert, dass es 2... Andreas Müller
07:12 PM bug #9302: Phycobank related issues for TypeDesignation formatting
AM:
Bisher war gewünscht, Quellen als Kurzzitat mit „Autor (Jahr)“ anzugeben, was sowohl für die designated by Que...
Andreas Müller
07:10 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting
Andreas Müller
05:05 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting
In the Phycobank context a couple of issues for type formatting have been found, after TypeDesginationSetManager has ... Andreas Müller
07:17 PM bug #9303 (New): [DISCUSS+IMPLEMENT] Make type designation micro references for non-lectotypes ed...
AM:
Bei der Diskussion ums Typusmodul wurde damals beschlossen, dass wir lediglich bei Lecto-, Epi- und Neotypen u...
Andreas Müller
06:41 PM Revision c3fed23d (cdmlib): ref #6591 fix SchemaUpdater_5184_5185 preliminary and add update scri...
Andreas Müller
06:30 PM Revision 4272bcd2 (cdmlib): ref #6591 fix OriginalSpellingMover
Andreas Müller
06:29 PM Revision b08ed055 (cdmlib): ref #6591 fix SingleTermRemover
Andreas Müller
06:28 PM Revision 37e61bd2 (cdmlib): ref #9302 remove bracket around year in short citations for type desi...
Andreas Müller
06:26 PM Revision d98c0473 (cdmlib): cleanup
Andreas Müller
06:15 PM Revision 0ec42e61 (cdmlib): ref #6591 add first version of Original Spelling Mover
Andreas Müller
06:15 PM Revision 90b8a418 (cdmlib): add SchemaUpdater_5184_5185
Andreas Müller

11/13/2020

12:36 AM feature request #9299: Add LSID to author and reference details
As far as I understand WGB this is a functionality that is needed soon. As to me it sounds like easy to implement I s... Andreas Müller
11:09 AM feature request #9299 (Closed): Add LSID to author and reference details
Katja Luther
12:34 AM bug #6947: Incorrect error for LSID field
I guess this is for review ... Andreas Müller
01:39 PM bug #6947 (Resolved): Incorrect error for LSID field
Applied in changeset commit:taxeditor|0faab9c0c0eae654583982c6f067e89851f758ee. Katja Luther
06:10 PM feature request #9301 (Closed): SpecimenTypeDesignationEditor: Add fields for citation and citati...
for all TypeDesignations where `typeStatus.hasDesignationSource() == true` field for citation and citationDetail need... Andreas Kohlbecker
05:41 PM feature request #8308 (Feedback): Extend specimen type designation editor
I can't see that there is anything missing:
type status:
![](picture825-1.png)
image references representi...
Andreas Kohlbecker
04:36 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
the Excel file belongs to the other ticket - cleaning up here .... Andreas Kohlbecker
04:35 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editor...
Update to the Excel file.
Now the reference type is also shown.
"Irregular" Reference Types are highlighted.
Andreas Kohlbecker
03:13 PM task #9300 (Feedback): Name Page: harmonize media specimen lectotype representations
Since the Citation part will end with a dot character, is seems incorrect to write "designated by", it better should ... Andreas Kohlbecker
03:10 PM task #9300 (Feedback): Name Page: harmonize media specimen lectotype representations
The name *Heterocapsa triquetra* f. *apiculata* Er.Lindem. has a media specimen as lectotype.
* The "designated ...
Andreas Kohlbecker
01:41 PM Revision d8d71f2a (taxeditor): ref #9266: minor
Katja Luther
01:39 PM Revision 0faab9c0 (taxeditor): fix #6947: fix error for empty lsid field
Katja Luther
11:04 AM feature request #9298 (New): Preference for IDinSource, IdNamespace and original information in n...
IDInSource and IDNamespace are not needed for nomenclatural source therefore the display should be handled by a prefe... Katja Luther
10:42 AM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
The zip file created by the cdmLight export should contain more informations about the data.
For example:
{TaxonN...
Katja Luther
10:39 AM Revision 316f9d85 (taxeditor): fix wrong background after changing rank in nameDetailElement
Katja Luther
10:11 AM feature request #9296 (New): Preference to show/not show infrageneric epithet for species
ERS:
Eingabe eines name in source: im Formular „New Scientific Name“ gibt es einen bug: das scroll-down-Menü für „Ra...
Katja Luther
10:09 AM feature request #9295 (New): Preference to set default reference type for new references
ERS:
Bei der Eingabe einer neuen Referenz steht der „Reference Type“ standardmäßig auf „Generic“. Der häufigste Fall...
Katja Luther
10:07 AM feature request #9294 (New): New person dialog with protected titleCache
ERS:
Wenn ich im Laufe der Eingabe einer neuen Referenz einen neuen Autor eingeben muss, öffnet sich im Dialogfeld „...
Katja Luther
09:06 AM feature request #9262 (In Progress): Several open issues for cdmlight export related to Cactaceae...
Katja Luther
08:58 AM feature request #7700 (Closed): use TypeDesignationSetManager for creating typedesignation string...
I think we can close this ticket as there is kind of a follow up ticket with #9279 Andreas Müller
08:22 AM Revision bdd421bd (taxeditor): fix empty datasource view
Katja Luther

11/12/2020

05:52 PM Revision 398413cc (cdmlib): ref #9253 removing initstrategy from DTO service method - cleaning up
Andreas Kohlbecker
04:44 PM Revision ba48bce0 (cdmlib): ref #9253 removing initstrategy from DTO service method
Andreas Kohlbecker
04:02 PM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
no more problems Andreas Kohlbecker
03:23 PM bug #9289: LazyInitializationException (LIE) in NameTypeDesignationEditor
fixed by commit:cdm-vaadin|84760d27
Andreas Kohlbecker
03:54 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
Andreas Kohlbecker
03:52 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
this ticket is either completed or open tasks are copied to new tickets, so it can be closed Andreas Kohlbecker
03:50 PM task #9293 (New): Use use DTO for Set<IdentifiableSource> sources in SpecimenOrObservationBaseDTO
copied from #9252 Andreas Kohlbecker
03:21 PM Revision 84760d27 (cdm-vaadin): ref #6581 adapting init strategy to new original source handling
Andreas Kohlbecker
11:39 AM Revision 68e7703e (taxeditor): ref #9266: restructure nomenclatural source detail element
Katja Luther
11:04 AM Revision 468ead78 (taxeditor): ref #9266: restructure nomenclatural source detail element
Katja Luther

11/11/2020

03:36 PM Revision 9270c708 (cdmlib): ref #9262: add homotypic group sortindex
Katja Luther
11:41 AM Revision 8f36abc7 (taxeditor): ref #9199: fix problems with nomenclatural reference details
Katja Luther
11:34 AM bug #8592: consider renaming menu entry General->Switch User
Currently it is not wanted that users connect to another db as this does not work correctly due to static term proble... Andreas Müller
08:59 AM task #7917: Revise ReferenceSystemTerms
Do you really think that a measurement method is the same as the mathematical model that is needed to make sense of t... Andreas Kohlbecker
08:29 AM Revision adf08111 (cdmlib): ref #8774: save term tree informations
Katja Luther
08:24 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Katja Luther wrote:
> > ...
> > This is caused by dirty data, I cleaned up the database, n...
Katja Luther

11/10/2020

05:53 PM task #7917: Revise ReferenceSystemTerms
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> > > So you are planning to use the r...
Andreas Kohlbecker
05:51 PM task #7917: Revise ReferenceSystemTerms
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > So you are planning to use the reference system for computati...
Andreas Müller
11:07 AM task #7917: Revise ReferenceSystemTerms
Andreas Müller wrote:
> So you are planning to use the reference system for computations in the near future?
Plac...
Andreas Kohlbecker
09:44 AM task #7917: Revise ReferenceSystemTerms
So you are planning to use the reference system for computations in the near future? Andreas Müller
08:52 AM task #7917: Revise ReferenceSystemTerms
BTW: the CRS for GPS is WGS 84
For solving the the current misconception in the model we need to distinguish the *...
Andreas Kohlbecker
05:04 PM task #9291 (Feedback): Clear all unnecesary TypeDesignation.citation entities and citationDetails
**This ticket should be solved after #9290 is being released and deployed to phycobank**
This is the query to whic...
Andreas Kohlbecker
04:59 PM bug #9290 (Closed): stop setting Registration.citation as citation for TypeDesignations in all ty...
As shown in the analysis ( attachment:"TaxonName and Typedesignation citations unequal_diff.xlsx" ) using the `Regist... Andreas Kohlbecker
02:48 PM Revision 2749233a (taxeditor): move menu item
Katja Luther
02:42 PM Revision e2669604 (taxeditor): show menu items only once
Katja Luther
12:19 PM bug #9286 (Resolved): Re-connect and change user should be disabled if no datasource is connected...
Applied in changeset commit:taxeditor|cea74dc3dd7328308f0fda121d2ccc5b7246c9a8. Katja Luther
12:17 PM Revision 5affe60a (taxeditor): ref #8774: do not allow duplicates in character editor
Katja Luther
11:51 AM Revision e4a5c66f (taxeditor): ref #8774: do not allow duplicates in term tree editors if voc doe...
Katja Luther
11:34 AM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
Buryatia belyaevae Kulikovskiy, Metzeltin & Lange-Bert. name type for Buryatia belyaevae Kulikovskiy, Metzeltin & Lan... Andreas Kohlbecker
09:43 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Katja Luther wrote:
> ...
> This is caused by dirty data, I cleaned up the database, now the feature trees and the ...
Andreas Müller
09:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> adding a child (which was a duplicate but the tree did not allow duplicates, don't know if t...
Katja Luther
09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
Katja Luther

11/09/2020

03:44 PM Revision 59a68768 (cdmlib): fix syntax exception
Katja Luther
03:39 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Unordered trees should preferably be ordered alphabetically by label or idInVoc or whatever the first part of the use... Andreas Müller
03:29 PM bug #8774: Reimplement term tree editors to implement the general save strategy
When adding/removing terms the tree should stay expanded. Currently it collapses and you have to reopen it. Best woul... Andreas Müller
03:27 PM bug #8774: Reimplement term tree editors to implement the general save strategy
~~The duplicate check should be done when adding the term not only when saving it.~~
this is fixed.
Andreas Müller
03:22 PM bug #8774: Reimplement term tree editors to implement the general save strategy
adding a child (which was a duplicate but the tree did not allow duplicates, don't know if this is relevant):
~~~
...
Andreas Müller
03:13 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t...
Andreas Müller
03:12 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t...
Andreas Müller
03:11 PM bug #8774: Reimplement term tree editors to implement the general save strategy
~~Changing the name of a vocabulary is not possible. The changes neither show up in the term tree editor nor do they ... Andreas Müller
02:52 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
Katja Luther
02:49 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Can we show the details of a term anyway even if it is not editable in the term tree editor....
Katja Luther
02:44 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Can we show the details of a term anyway even if it is not editable in the term tree editor. This is because the pure... Andreas Müller
02:34 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named Area", "Others" and then... Andreas Müller
02:31 PM bug #8774: Reimplement term tree editors to implement the general save strategy
It is now possible to open 2 term tree Editors of the same type. This is not wanted as a term tree editor always edit... Andreas Müller
02:28 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
Trying to open the feature tree editor opened it in the buttom panel and no tree appeared and no conext menu existed ... Andreas Müller
02:25 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Drag&drop still seems to work like in the old version with no dirty flag but immediate save ...
Andreas Müller
02:07 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
~~Drag&drop still seems to work like in the old version with no dirty flag but immediate save of change.~~ Andreas Müller
03:16 PM feature request #9288 (New): Add symbols for flags in use for term trees in term tree editor
The flags are "allow duplicates", "order relevant" and "is flat".
As long as we do not have better symbols we coul...
Andreas Müller
02:49 PM bug #9287 (New): Show term details in details view of term tree editor
From ticket #8774:
Can we show the details of a term anyway even if it is not editable in the term tree editor. Th...
Katja Luther
02:42 PM Revision cea74dc3 (taxeditor): fix #9286: add core expression to reconnect menu item
Katja Luther
02:12 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
Currently choosing the re-connect leads to a NPE Andreas Müller
02:06 PM task #7917: Revise ReferenceSystemTerms
I remember the outcome differently.
> conglomerate of different types of possibilities to define what has been use...
Andreas Kohlbecker
01:33 PM task #7917: Revise ReferenceSystemTerms
We had discussed this issue some years ago and as far as I remember the result was, that the term ReferenceSystem mig... Andreas Müller
01:44 PM feature request #8402: ordering typedesignations in name and taxon page
follow up tasks are copied to #9283, #9284, #9285 Andreas Kohlbecker
01:43 PM task #9285 (New): apply the order of the chosen TermTrees to the typedesignations in name and tax...
This should preferably implemented by adding a query parameter to the webservice delivering the typedesignations.
...
Andreas Kohlbecker
01:40 PM feature request #9284 (New): Admin UI to define the TermTrees as sort order preset
this is required at least for the order of typedesignations in name and taxon page, see #8402 Andreas Kohlbecker
01:37 PM task #9283 (New): Webservice for TermTrees implemented
this webservice may be similar to the vocabulary web service.
It is important that the order of terms is retained
Andreas Kohlbecker
01:23 PM bug #9215 (Closed): Drop down for empty rank does not work
This seems to be fully fixed. Andreas Müller
01:15 PM task #9266 (Feedback): Remove protologue section from TaxEditor
The protologue section should also be removed from local and DB preferences I guess as it probably has no effect to u... Andreas Müller

11/06/2020

10:03 PM Revision 361c1e1d (cdmlib): cleanup and javadoc
Andreas Müller
05:20 PM Revision 071a56e6 (cdm-dataportal): ref #8402 ref #9279 adapting sort order to latest changes in ...
Andreas Kohlbecker
05:15 PM Revision 22354fa0 (cdm-dataportal): ref #8402 ref #9279 adapting sort order to latest changes in ...
Andreas Kohlbecker
05:13 PM feature request #8402: ordering typedesignations in name and taxon page
The sort order should follow the order of the type designation status terms either of that in the vocabulary or in a ... Andreas Kohlbecker
05:12 PM task #9266 (Resolved): Remove protologue section from TaxEditor
The protologue section is removed/commented, please review afterwards I will remove the code completely. Katja Luther
05:09 PM Revision 8d385449 (taxeditor): rename/structure language preferences - admin prefs
Katja Luther
05:06 PM Revision 8ec0ee52 (taxeditor): rename/structure language preferences
Katja Luther
05:04 PM Revision 85ff485a (taxeditor): ref #9266: remove protologue section - needs to be cleaned up
Katja Luther
03:59 PM feature request #9282 (Closed): Add nomenclatural standing
According to #9272 there are 4 classes of nomenclatural standing. These should be stored together with the accordings... Andreas Müller
01:41 PM Revision b6099a9c (cdmlib): ref #8774: missing files
Katja Luther
01:26 PM Revision 9ad46d6b (cdmlib): ref #9252 piping baseofRecord through KeyTermValueProcessor
Andreas Kohlbecker
01:24 PM Revision d5d943cb (cdm-dataportal): ref #9252 adapting portal to latest DTO changes
Andreas Kohlbecker
01:22 PM feature request #9272: Add missing nomenclatural status
The situation has changed. Later isonym already exists as name relationship, not as status. At the same time there ar... Andreas Müller
01:06 PM feature request #9279: Improve type designation formatting and TypeDesignationSetManager
An example for unparsed specimen from Cactaceae: Selenicereus anthonyanus (Alexander) D.R.Hunt
Resulting in:
 –...
Andreas Müller
12:16 PM feature request #9279 (In Progress): Improve type designation formatting and TypeDesignationSetMa...
Andreas Müller
12:05 PM bug #9281 (New): Set basionym not available for heterotypic synonyms after drag & drop
mail ERS:
beim Zusammenstellen von Synonymen in einer homotypischen Gruppe im Freitext-Editor ist es anschließend ...
Katja Luther
11:19 AM Revision b8a1c0fe (taxeditor): fix i18n
Katja Luther
10:46 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
all termtree editors are now switched to dtos. please review. Katja Luther
10:45 AM Revision a5c3b1fd (taxeditor): ref #8774: fix character creation
Katja Luther
10:44 AM Revision 2cb9b55f (cdmlib): ref #8774: fix getPath of termnode
Katja Luther

11/05/2020

05:18 PM task #9280 (Closed): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel()
The property name IKeyTerm.message is misleading and confusing it should be renamed to label
----
From email co...
Andreas Kohlbecker
04:04 PM report #8177 (Worksforme): Discuss: How to add originals of a type specimen
We concluded that adding of intermediate originals to a specimen is a special case for phycobank. This usecase in not... Andreas Kohlbecker
03:04 PM Revision c3e91e82 (taxeditor): add local to application MANIFEST
Katja Luther
02:58 PM Revision cee85ae0 (taxeditor): ref #9154: fix fragment.e4xmi
Katja Luther
02:21 PM Revision 1f3831c5 (cdmlib): cleanup
Andreas Müller
02:21 PM Revision ab1f58a9 (cdmlib): ref #9279 improve TypeDesignationSetManager
Andreas Müller
02:08 PM feature request #9279 (Closed): Improve type designation formatting and TypeDesignationSetManager
these are open issues from #7700 and general issues
Some issues are
* parameterize formatting (with citation, w...
Andreas Müller
12:50 PM Revision df35ccb3 (cdmlib): remove unused method in depracted FeatureNodeService
Katja Luther
11:55 AM Revision de68e009 (cdmlib): ref #8774: avoid NPE in delete method
Katja Luther
11:18 AM Revision f00aae44 (cdmlib): ref #8774: improve save method for new characternodes
Katja Luther
09:58 AM feature request #9277: User rights for name, name type, and specimen type notes
Submitters and curator(s) should have the same rights to create notes.
except for the status of the registrations:...
Wolf-Henning Kusber
09:23 AM feature request #9277 (New): User rights for name, name type, and specimen type notes
Submitters and curator(s) should have the same rights to create notes.
Name editor:
Technical (currently enabled ...
Wolf-Henning Kusber
09:47 AM feature request #9278 (New): Notes for references
Currently the curator has the option to fill
Editorial notes (for publication; not implemented yet)
Technical notes...
Wolf-Henning Kusber
09:32 AM Revision 8bf5dd93 (taxeditor): ref #8774: fix save of newly created character nodes
Katja Luther
09:29 AM Revision 25b3a146 (cdmlib): ref #8774: save method for new characternodes
Katja Luther
 

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