Activity
From 07/18/2019 to 08/16/2019
08/16/2019
- 10:36 PM bug #8385: Open issues in DB preferences
- ~~Restore button does not yet work for Distribution Editor status and area selection preferences~~
this is fixed - 10:33 PM bug #8385: Open issues in DB preferences
- ~~Distribution editor status selection: changes are not visible in Preferences view after reopening the preferences v...
- 10:27 PM bug #8385: Open issues in DB preferences
- ~~name.nomenclaturalStatus can not be removed by Reset Default~~
this is fixed. - 10:25 PM bug #8385: Open issues in DB preferences
- ~~some preferences are not deleted for NameDetailsView => deselect all and reopen preferences => 3 prefs stay selecte...
- 10:21 PM bug #8385: Open issues in DB preferences
- ~~ABCD import is now implemented on both sides, but "allow override" does not yet exist for "ABCD import provider"~~
... - 10:19 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> When opening Peferences - Distribution Editor for the first time the drop downs for some fie... - 10:12 PM bug #8385: Open issues in DB preferences
- >Name details view can not be set to "default" (always chooses enabled after reopening)
~~Now it always sets it ba... - 10:09 PM bug #8385 (Feedback): Open issues in DB preferences
- ~~When opening Peferences - Distribution Editor for the first time the drop downs for some fields were completely emp...
- 09:55 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Andreas Müller wrote:
> Please open a new ticket for the final implementation with a new wizard including the questi... - 09:51 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- The labels of the 2 menus should be equal except for the addition about the Name in Source. Is there a reason why you...
- 09:44 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Please open a new ticket for the final implementation with a new wizard including the question if the name in sources...
- 09:38 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- The method with setting the name should be moved down in menu
- 09:37 PM feature request #3472 (Feedback): Update name in source data when changing an accepted taxon into a synonym
- Currently both methods do end in an unexpected state. After running the operation the old taxon is dirty (and unsaved...
- 09:40 AM feature request #3472 (Resolved): Update name in source data when changing an accepted taxon into a synonym
- this is implemented now.
The setting of the name in source is configurable, but in editor a new wizard would be ne... - 09:24 PM bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
- I close this ticket as there is a follow up ticket.
- 09:22 PM feature request #8299 (Feedback): add typification column to scientific name and homotypical group in cdm light
- Testing is time consuming for me. Please ask Walter if it is as expected.
- 09:20 PM feature request #8334 (Closed): Move sources for type designations to details view
- 09:17 PM bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
- Hmm, now the warning is also shown if the misapplication is referenced e.g. by an identification key which is not nec...
- 09:05 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- "Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't know if it is maybe better ...
- 09:01 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- I think we may move synonyms below taxa as they are the second biggest group. Misapplications and pro parte synonyms ...
- 08:59 PM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Hybrids are not a set of independent taxa but more a filter on each group. So we should maybe move it down (directly ...
- 08:57 PM feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- If only Misapplications and/or pro parte synonyms are selected the finish button is not enabled but should (at least ...
- 08:43 PM feature request #8282: Implement placementDoubtful in TaxEditor
- Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right click menu.
- 12:24 PM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
- The new field should be close to the taxon node information as it is from taxon node. Currently it is in the middle o...
- 08:03 PM Revision 96b27743 (cdmlib): ref #7957 add javadoc to description types
- 07:00 PM Revision 7e477034 (cdmlib): ref #8441 add tests for FeatureState loading and move some test data to terms package
- 06:27 PM Revision 73ef4c0b (cdmlib): ref #8441 fix mapping for FeatureState
- 05:29 PM Revision cf3d9f76 (taxeditor): ref #8475 Create FeatureState in wizard dialog
- 04:33 PM Revision b02697a5 (cdmlib): minor
- 04:32 PM Revision 887eb4d0 (cdmlib): move term node DAOs to term package
- 03:35 PM Revision c34a11ca (taxeditor): ref #7957 adapt tests to DescriptionBase.types not null
- 03:33 PM Revision 06a2de9b (taxeditor): cleanup
- 03:22 PM feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor
- Since #6794 it is possible to distinguish term collections which include duplicates (e.g. structure trees which inclu...
- 03:09 PM feature request #8476 (Closed): Implement support for TermCollection.isFlat in TaxEditor
- Often term collections are meant to be a flat list or set without hierarchical dependencies. For these collections th...
- 03:09 PM Revision 593915d2 (taxeditor): ref #8475 First (unstable) implementation of FeatureState details
- 03:08 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
- 02:58 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
- In general the ordering seems to work now.
- 02:56 PM bug #8465 (Feedback): Term nodes order in term trees is ignored in term tree editor
- As Term nodes should be not always ordered anymore (TermCollection.orderRelevant flag) we could implement this alread...
- 02:45 PM feature request #8474 (Closed): Make TermCollection.orderRelevant usable for TermTrees
Dazu müsste es:
1. ~~editierbar sein~~
2. ~~Der TermTree müsste unterschiedlich sortiert angezeigt werden, je n...- 01:22 PM Revision c1662123 (taxeditor): ref #8385: adapt preference keys to preference predicates
- 01:22 PM bug #8473 (New): Migrate from GrantedAuthoritiesImpl to CdmAuthority and Role
- First of all the handling of authorities needs to be migrated and tested to AuthorityBase (by AK). Once this is done ...
- 01:14 PM bug #4884 (Closed): Update Reference_AUD.refType to allow NULL
- I guess this works.
- 12:49 PM Revision 94c6459b (taxeditor): fix search dialog default handling
- 12:41 PM feature request #8472 (Closed): Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- Currently it uses marker type "Computed" to mark the descriptions.
... also needs update script for existing descr... - 12:38 PM feature request #7957: Add types for taxon description (as EnumSet)
- This has been implemented now as an EnumSet for better performance.
Please review.
- 10:38 AM feature request #7957 (Resolved): Add types for taxon description (as EnumSet)
- Applied in changeset commit:cdmlib|1962891319edeb12380aa69994467f674a96ce96.
- 12:35 PM feature request #8471 (Closed): Computed descriptions should be disabled in TaxEditor
- Taxon descriptions being computed (DescriptionBase.types contains COMPUTED or AGGREGATED) should be disabled for edit...
- 12:16 PM feature request #8398: Add nomenclatural code edition to ruleConsidered
- As this was your (phycobank) requirement I give it to you for review.
- 12:15 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Maybe we can do this in 5.10 latest so it is close to the model change.
I think we should add it to configuration ... - 12:14 PM Revision 0ae3531b (taxeditor): minor
- 12:14 PM Revision a60ccec4 (taxeditor): ref #8385: enable apply button when provider added or removed from preference
- 12:14 PM Revision f9840e06 (taxeditor): ref #8385: correct preference handling for provider list
- 12:12 PM feature request #8404 (Closed): Add update step list within updaters
- Seems to work as expected and is very nice.
- 12:11 PM feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
- So I close this ticket.
- 12:10 PM feature request #8454: Only allow certain patterns as username and groupname
- This should be fixed. Who ever wants please review. I tested creating a new user and a group in TaxEditor. For both w...
- 12:04 PM feature request #8470 (Closed): Handle username constraints in user and group editing
- Since #8454 a regex exist for usernames and groupnames.
For new usernames and groups the TaxEditor should validat... - 11:47 AM feature request #8441: Add FeatureState class
- Please review.
Maybe there are issues with orphan removal handling. - 11:45 AM feature request #8441 (Resolved): Add FeatureState class
- This is implemented, old implementation still exists in parallel. Should be removed with next update script.
SDD I... - 11:41 AM feature request #8469 (In Progress): Open PolytomousKeyGenerator issues
- * ~~adapt dependency handling to new FeatureState handling~~
* in general improve the handling of dependencies, mayb... - 11:35 AM task #8468 (Closed): Remove old InapplicableIf tables
- 11:03 AM Revision 525deb12 (taxeditor): adapt test H2 to schema v5.8.2
- 11:02 AM Revision 34062138 (cdmlib): ref #7959 rename DescriptionState -> DescriptionType and fix bug for enum loading
- 10:48 AM Revision f922cb22 (cdmlib): adapt cached model to 5.8.2
- 10:43 AM Revision 7134ca41 (cdm-vaadin): adapt test H2 to schema v5.8.2
- 10:42 AM Revision f81da2cc (cdm-vaadin): minor
- 10:38 AM Revision eeafa6f5 (cdmlib): for the moment set TermCollection.orderRelevant default to true
- 10:36 AM Revision beb18173 (cdmlib): adapt TestModelUpdate to run for all 3 H2 DBs
- 10:34 AM Revision a0d6f613 (cdmlib): adapt test H2 to model changes v5.8.2
- 10:34 AM Revision 9276e073 (cdmlib): ref #7957 add not null to update script for DescriptionBase.types
- 10:15 AM Revision a3d196bc (taxeditor): fix test for swapAcceptedwithSynonym
- 10:14 AM Revision 3ff169c5 (taxeditor): fix test for swapAcceptedwithSynonym
- 10:10 AM Revision b1d5cef3 (cdmlib): Cleanup
- 10:10 AM Revision 20ffe9b7 (cdmlib): ref #7099 , ref #8464 some adaptions on constraints for CdmAuthority
- 10:10 AM Revision 19628913 (cdmlib): fix #7957 add types to DescriptionBase
- 10:10 AM Revision 49405267 (cdmlib): Use AccessType Field for Character class
- 10:10 AM Revision ec5f2748 (cdmlib): ref #8441 adapt testdata and SDDDocumentBuilder to FeatureState
- 10:10 AM Revision ddda469d (cdmlib): minor
- 10:10 AM Revision abe8cce6 (cdmlib): ref #8441 further implementation for FeatureState and inapplicableIf
- 10:10 AM Revision 4e36de56 (cdmlib): ref #8441 FeatureState classes added and TermNode adapted
- 10:00 AM Revision 73a78654 (cdmlib): ref #8467 add commented code
- - un-comment when cloned descriptions can be added to taxon
descriptions as sources - 09:37 AM Revision 682f52a4 (taxeditor): ref #3472: adapt editor to changes in methods moving descriptions
- 09:01 AM Revision fe8fa9b2 (cdmlib): ref #3472: fix set name in source
08/15/2019
- 04:09 PM feature request #7597 (Closed): Aggregate and persist descriptions on taxon level
- Closing this feature. No review needed as this is still experimental. Follow up ticket #8467
- 04:08 PM feature request #8467 (Closed): Save a "snapshot" of the SpecimenDescriptions used for aggregation
- When aggregating SpecimenDescriptions to a TaxonDescriptions the SDs used should be cloned and associated as sources ...
- 03:57 PM feature request #8464: Make AuthorityBases unique
- This seems to be more difficult then I thought.
In general hibernate allows the ,uniqueConstraints=@UniqueConstra... - 02:59 PM feature request #8441 (In Progress): Add FeatureState class
- 02:21 PM bug #8465 (Resolved): Term nodes order in term trees is ignored in term tree editor
- Applied in changeset commit:taxeditor|74a9e9d7da34b3e2d6a895a7b091364125c6f648.
- 12:19 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
- So, if the flag is switched on, the tree should be ordered by tree order, otherwise alphabetically (or by any other c...
- 12:06 PM bug #8465: Term nodes order in term trees is ignored in term tree editor
- Note: The new TermCollection base class has a flag now called "orderRelevant". This should in future decide if the or...
- 10:32 AM bug #8465 (Closed): Term nodes order in term trees is ignored in term tree editor
- ich hatte gerade einen neuen Feature Term "Chemophenetics" für den Cichorieae Feature Tree geschaffen , den wollte ic...
- 02:21 PM Revision 74a9e9d7 (taxeditor): fix #8465 Do not sort term nodes with term tree comparator
- 01:57 PM Revision 743a64ea (cdmlib): ref #3472: make setting of name in source configurable
- 01:52 PM task #8466 (Closed): Delete FeatureTree tables
- FeatureTree has been moved to TermCollection. The old tables have not yet been deleted to have the chance to find pos...
- 12:39 PM feature request #8442: Add fields to handle external terms to DefinedTermBase or TermBase
- Andreas Müller wrote:
> This should be fixed. Also added new field "importMethod" and extracted all data to an exter... - 10:41 AM Revision 6c4f05ea (cdmlib): ref #3472: add nameInSource in makeTaxonNodeSynonym
- 10:34 AM Revision d1d76c46 (cdmlib): ref #3472: swap Synonym and accTaxon should move all taxon information to the new taxon
- 10:24 AM Revision 56d0ef92 (cdmlib): add add unitGUID to abcd import
- 10:22 AM Revision f5050d21 (cdmlib): update caches prgress monitor with name
- 10:20 AM Revision af1131f2 (cdmlib): ref #8385: add method to get voc by uuid
- 10:17 AM Revision 905236e8 (taxeditor): ref #8385: adapt strucutre of db prefs to local prefs
- 09:50 AM Revision fddfd97b (taxeditor): missing l10n files
- 09:39 AM Revision da38bb5e (taxeditor): multiline text fiedl for reference title
- 09:39 AM Revision c03d27b9 (taxeditor): ref #8447: move shared taxa and disable if not needed
- 09:39 AM Revision 0c8bd397 (taxeditor): ref #8447: add man and pp to setPublish configurator wizard
- 09:15 AM feature request #8334 (Resolved): Move sources for type designations to details view
08/14/2019
- 11:45 AM feature request #7957 (In Progress): Add types for taxon description (as EnumSet)
- 11:04 AM Revision 9f84cafb (cdmlib): Adapt uniqueness and notNull for some authority parameters
- 10:59 AM task #7099: Make CdmAuthority a persistable class
- forgot to implement uniqueness. Moved to #8464
- 10:41 AM task #7099 (Resolved): Make CdmAuthority a persistable class
- This is implemented for now. Old GrantedAuthorities still exist and are in use but we could easily switch to new ones...
- 10:56 AM feature request #8464 (New): Make AuthorityBases unique
- The old GrantedAuthorityImpl.authority was unique and NotNull. This was forgotten to implement when implementing CdmA...
- 10:51 AM feature request #8442 (Resolved): Add fields to handle external terms to DefinedTermBase or TermBase
- This should be fixed. Also added new field "importMethod" and extracted all data to an external embeddable class "Ext...
- 10:48 AM feature request #3972 (Closed): Strictly validate username to not null and not empty
- This should be fixed by fixing #8454
- 10:47 AM feature request #8454 (Resolved): Only allow certain patterns as username and groupname
- This should be solved now and seems to work. Still needs testing in TaxEditor and maybe other surroundings.
- 10:45 AM bug #8429 (Resolved): Rename DeterminationEvent_Reference.setOfReferences_id
- This is fixed now by renaming the parameter in model from setOfReferences to references.
Making it a set of sourc... - 10:45 AM feature request #8463 (New): Make DeterminationEvent.references sources
- Currently the link to Reference but they should link to Source. DeterminationEvent should probably become a Sourceabl...
08/13/2019
- 05:38 PM Revision 69944d4b (cdmlib): update model cache for schema version 5.8.1
- 05:02 PM Revision d9054fe5 (taxeditor): adapt TaxEditor to Schema changes v5.8.1
- 04:46 PM Revision d742db9a (cdmlib): ref #7099 preliminary removing initialization of authorities to avoid LIE in AuthenticationPresenterTest
- 04:24 PM Revision 8b58ece8 (cdm-vaadin): adapt Vaadin to model changes v5.8.1
- 03:16 PM Revision 0059f9df (taxeditor): adapt test H2 to schema v5.8.1
- 03:13 PM Revision cf816bf2 (cdmlib): adapt test H2 to schema v5.8.1
- 03:13 PM Revision 3f6ffa04 (cdmlib): adapt poms to correct handling of versions => move versions to parent pom
- 03:13 PM Revision 8d58f4b9 (cdmlib): ref #8454 fix UserAndGroupServiceImplTest
- 03:13 PM Revision 9bee6bd5 (cdmlib): ref #8442 fix some jaxb annotations
- 03:13 PM Revision d7b78aa0 (cdmlib): ref #8442 add externallyManaged to UserDefined classes for matching and merging
- 03:13 PM Revision c39b4bdb (cdmlib): minor
- 03:13 PM Revision 609086da (cdmlib): ref #8442 jaxb for externallyManaged
- 03:13 PM Revision 43f0e2a1 (cdmlib): ref #8442 , ref #8429 adapt test schemas to model changes
- 03:13 PM Revision dd017de5 (cdmlib): ref #8442 update script for externally managed, ref #8454 update script for username patterns
- 03:13 PM Revision 040eb2b6 (cdmlib): cleanup
- 03:13 PM Revision 8de7077d (cdmlib): add IRuleConsidered
- 03:13 PM Revision 7fd108f2 (cdmlib): ref #8442 add ExternallyManagedImport
- 03:13 PM Revision 816fdaa0 (cdmlib): ref #8442 add externallyManaged to DefinedTermBase and TermVocabulary and make ExternallyManaged an embeddable class
- 03:13 PM Revision 4f817727 (cdmlib): ref #8442 move AuthorityType to model.common
- 03:13 PM Revision 6c8124b2 (cdmlib): ref #7099 update script for CdmAuthority tables
- 03:13 PM Revision 7b733b2a (cdmlib): ref #8429 rename DeterminationEvent.setOfReferences to DeterminationEvent.references
- 03:13 PM Revision fbe7ab55 (cdmlib): adapt model version number
- 03:13 PM Revision 83615ec3 (cdmlib): ref #7099 fix loading of EnumSet and add tests
- 03:13 PM Revision b6177938 (cdmlib): ref #7099 add CdmAuthority to User, remove CDM_VIEW from tests, cleanup
- 03:13 PM Revision 6183e939 (cdmlib): ref #7099 further updates to CdmAuthority for persistance + add Role class
- 03:13 PM Revision 7fbe6eb3 (cdmlib): ref #7099 rename CdmPermissionClass to PermissionClass
- 03:13 PM Revision 55ad1a65 (cdmlib): ref #7099 adapt CdmAuthority class
- 03:13 PM Revision d5579203 (cdmlib): ref #7099 rename model.rights to model.permission
- 03:13 PM Revision 39a05e3b (cdmlib): ref #7099 move CRUD and Operation to model
- 03:13 PM Revision dbc1a185 (cdmlib): ref #7099 minor
- 03:13 PM Revision 0377d70f (cdmlib): ref #7099 move CdmPermissionClass to model
- 03:13 PM Revision 899b7d66 (cdmlib): ref #7099 move user, group and GrantedAuthorityImpl to new rights package
- 03:13 PM Revision 3ff6cdef (cdmlib): ref #8454 add regex to User.username and Group.name
- 03:13 PM Revision 0b091e82 (cdmlib): adapt SchemaUpdater_55_58 to new version
- 03:09 PM Revision 8586ad49 (cdm-vaadin): adapt test H2 to schema v5.8.1
- 12:02 PM bug #8462 (Closed): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- Reported by Henning on 04.08.19 19:17
**Fehler in PhycoBank, 102010, Treptacantha ballesterosii**
Beim Specie... - 11:48 AM feature request #8461 (Closed): Change term URI of TDWG Term to identifier in additivity ontology
- This should be done in bulk with a script
- 11:20 AM feature request #8135 (Closed): Implement verbatim type information in TaxEditor
- closing ticket -> translation will be handled in #8459
- 11:07 AM feature request #8460 (New): Show examples in text field
- Some text field have labels that are not intuitive if you are not familiar with the EDIT platform. Having some inform...
- 11:01 AM feature request #8459 (New): i18n for taxeditor details view labels
- 09:17 AM Revision 53627082 (taxeditor): ref #7597 Re-load dataset descriptions after aggregation
- - adapt to service layer change (use UUID as parameter)
- 09:14 AM Revision 0339827e (taxeditor): ref #7597 Clear matrix descriptions before loading them
- 09:13 AM Revision 845c6b16 (cdmlib): ref #7597 Fix deletion of aggregated descriptions
- 09:12 AM Revision 7353eb10 (cdmlib): cleanup
- 09:12 AM Revision 8efb1fe4 (cdmlib): ref #7597 Use UUID for service call
- 08:40 AM Revision 7bba825c (taxeditor): ref #8334 Move sources in details view to bottom
08/12/2019
- 11:41 PM task #8458: document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- As this has been worked on recently we should do it soon.
- 05:39 PM task #8458 (Closed): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- `FieldUnitDTO OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection<FieldUnitDTO> fieldUnits,...
- 11:36 PM task #8456: FieldUnitDTO: remove newInstanceMethod
- Passing this ticket to Katja or Patrick as I never worked on/with this class.
Note: syntax of the method name is a... - 05:31 PM task #8456 (Closed): FieldUnitDTO: remove newInstanceMethod
- copied from #8414
FieldUnitDTO providing a newInstance method. This has to be removed:
~~~
/**
* @pa... - 06:20 PM Revision a083a070 (cdmlib): ref #7597 Fix concurrent modification exception
- 06:20 PM Revision 644cd491 (taxeditor): ref #7597 Temporarily disable refresh after aggregation
- 05:44 PM bug #8448 (Closed): Maps settings > Bounding box inconsistent
- works
- 05:43 PM task #8414 (Closed): occurrence controller code cleaning and harmonization
- all remaining tasks copied to new tickets
- 05:36 PM task #8457 (Duplicate): FieldUnitDTO: remove taxonRelatedDerivedUnits
- duplicates #8425
- 05:33 PM task #8457 (Duplicate): FieldUnitDTO: remove taxonRelatedDerivedUnits
- copied from #8414
FieldUnitDTO.taxonRelatedDerivedUnits is an obsolete remain from an older implementation an ne... - 05:08 PM task #8166 (Closed): Adapt dataportal to term structure changes
- profile settings are working in the above test portals (palmweb has not been tested, since there is no cdm test insta...
- 04:47 PM bug #8440 (Closed): specimen accession numbers link to specimen page
- Wolf-Henning Kusber wrote:
>
> Warning in Test portal
> Notice: Array to string conversion in theme_item_list(... - 04:46 PM task #8455 (New): Show specimen preferredStableURL as external link icon?
- copied from #8440 , needs discussion.
- 04:27 PM task #8449 (Closed): improve layout of registration page to clearly show the nomencaltural act
- 04:26 PM task #8436 (Closed): featureTree/* services should filter the termTrees by the TermType Feature
- 04:18 PM Revision 1a5b2194 (cdmlib): ref #8437 fixing LIE in DerivedUnitFacadeController
- 03:43 PM Revision 51c30254 (cdmlib): ref #7597 Delete all aggregated descriptions when re-aggregating
- 01:38 PM task #8406 (Feedback): specimens and occurrence code cleaning and harmonization
- thank you for fixing this.
there are two commented code parts in this method:
~~~php
// $specimen_t... - 11:27 AM task #8406: specimens and occurrence code cleaning and harmonization
- the view for the search for the genetic accession number did not work anymore. I fixed it. Please have a look.
- 01:27 PM Revision f41c2b5e (cdm-dataportal): avoid accessing uninitialized variable
- 01:27 PM Revision 1f2c4dcf (cdm-dataportal): ref #8449 adapting test
- 01:27 PM Revision d80b3059 (cdm-dataportal): ref #8440 adapting and extending tests
- 12:34 PM feature request #8411: additional requirements for export/import path selection
- the wizard shows the expanded view of the file system to the last selected diectory. So the last selected directory i...
- 12:25 PM bug #8446 (Closed): Allow setPublish for subtree to filter for hybrids
- seems to work as expected
- 12:06 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Agreed ... and implemented in the way you pointed out.
- 12:05 PM Revision 19b30c4f (cdmlib): ref #8437 ITermTreeService termType Feature as filter includes also Character
- 11:27 AM Revision ff51c1cd (cdm-dataportal): ref #8406: fix the view for the specimen hierarchy to a genetic acc nr
- 10:49 AM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- please review
- 10:01 AM Revision 8cb3295a (cdmlib): setters of subtreeConfigurator should be void again, adapt tests
08/09/2019
- 02:36 PM bug #8444 (Resolved): Show warning if misapplied names / pro parte synonyms are used more then once
- So I change ticket title for documentation
- 11:59 AM bug #8444: Show warning if misapplied names / pro parte synonyms are used more then once
- now the warning is implemented as well.
- 11:59 AM bug #8444 (Worksforme): Show warning if misapplied names / pro parte synonyms are used more then once
- ahh, yes, sorry, I didn't expect the taxon details to be in a subsection. But this makes sense. We can close this tic...
- 11:19 AM bug #8444: Show warning if misapplied names / pro parte synonyms are used more then once
- the publish flag is already implemented (maybe the taxon details are collapsed?).
- 12:58 PM Revision da93b804 (taxeditor): minor
- 12:32 PM Revision d12aae39 (cdmlib): ref #8282: adapt save taxonnode to new doubtful attribute
- 12:31 PM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
- this is implemented now, please review.
- 12:17 PM feature request #8282 (In Progress): Implement placementDoubtful in TaxEditor
- 12:30 PM Revision 4601cb73 (taxeditor): ref #8282: adapt editor to new doubtful attribute in taxonnode
- 12:13 PM task #7099 (In Progress): Make CdmAuthority a persistable class
- 12:11 PM Revision bd2dfdfa (cdmlib): cleanup
- 11:59 AM Revision 5f3e1fcb (taxeditor): fix #8444: add warning if taxon used in taxonrelationship is used more than once
- 10:36 AM feature request #8299: add typification column to scientific name and homotypical group in cdm light
- please review
- 10:16 AM feature request #8454 (In Progress): Only allow certain patterns as username and groupname
- 09:20 AM feature request #8454 (Closed): Only allow certain patterns as username and groupname
- ... to avoid unwanted characters like ;,ö*... Also avoid unvisible characters, whitespaces and linebrakes this way.
...
08/08/2019
- 10:08 PM Revision 3de07382 (cdmlib): minor
- 03:53 PM bug #8430 (Closed): maps zoom to wrong bbox with some layers
- Seems to work correctly. I could not find a non-working portal. Also checked some production portals as this was rele...
- 03:42 PM feature request #8135 (Feedback): Implement verbatim type information in TaxEditor
- Works as expected. Minor issue: translation for button is missing. Can be closed afterwards.
- 03:39 PM feature request #8334 (Feedback): Move sources for type designations to details view
- Not designated (for SpecimenTypeDesignation) shows up below the sources, but should be above. Sources should be on bo...
- 03:24 PM Revision 63ada120 (taxeditor): ref #7597 Use aggregation config (recurse aggregation = true)
- 03:24 PM Revision dead0aaf (cdmlib): ref #7597 Add configuration to data set aggregation
- - implement recursive aggregation
- 02:26 PM bug #8446: Allow setPublish for subtree to filter for hybrids
- Kajta, can you please review functionality once implemented in TaxEditor?
- 02:22 PM bug #8446 (Resolved): Allow setPublish for subtree to filter for hybrids
- Applied in changeset commit:cdmlib|c44fd9bd6420a032ab1e04c3b92ee4c20f2aac93.
- 02:24 PM Revision 77f78293 (cdmlib): cleanup
- 02:22 PM Revision c44fd9bd (cdmlib): fix #8446 Allow setPublish for subtree to filter for hybrids
- 02:05 PM Revision 9c128421 (taxeditor): ref #8385: adapt local and db preference pages
- 02:03 PM Revision fe64715e (cdmlib): ref #8385: add new preference predicates
- 01:42 PM task #8449: improve layout of registration page to clearly show the nomencaltural act
- The layout is fully satisfying (for new names/types and types)
Order also checked for example for a type only:
... - 10:24 AM feature request #8453 (New): Improve performance of DescriptiveDataSet
- A DescriptiveDataSet stores taxon and specimen descriptions and a set of taxon nodes. While taxon descriptions are di...
- 09:38 AM bug #8440: specimen accession numbers link to specimen page
- Tested for Registration page, name page, and specimen page.
Example: Gomphonella acsiae
Links are working.
W... - 09:22 AM task #8424: evaluate publish flags in the full derivative path
- As far as I know the SpecimenOrObservation publish flag is not evaluated by webservices at all, yet (or only in very ...
- 09:14 AM feature request #8452 (New): [DISCUSS] Should taxa hava an explicit taxon description for specimen?
- Maybe it would be helpful to separate taxon descriptions with specimens and those with other description elements.
... - 09:07 AM feature request #8451 (New): Link specimen to taxon via Drag and Drop
- It would be a nice feature to be able to link a specimen to a taxon via drag&drop. This could be done from the specim...
- 08:36 AM feature request #7589 (Closed): Performance, UX and stability patches for CharacterMatrix
- 08:36 AM feature request #7589: Performance, UX and stability patches for CharacterMatrix
- Closing this ticket to avoid getting to big -> Opening new ticket with specific UX issues -> #8450
- 08:35 AM feature request #8450 (New): Character matrix UX
- **Details View für Einzelwerte in Matrix**
wenn ich in der Matrix den Details View verwende (was sicher selten der F...
08/07/2019
- 10:00 PM task #8449 (Resolved): improve layout of registration page to clearly show the nomencaltural act
- please review
- 09:44 PM task #8449 (Closed): improve layout of registration page to clearly show the nomencaltural act
- As discussed with Henning on Friday 2nd of August 2019, we decided for the following solution:
* the nomenclatural... - 09:47 PM Revision c5abae79 (cdm-dataportal): ref #8449 registration page: better emphasizing the nomenclatural act to make clear what has been registered
- 04:54 PM feature request #8403 (Rejected): name page: show types specimens as expandable derivate tree
- 04:54 PM feature request #8403 (Closed): name page: show types specimens as expandable derivate tree
- Andreas Kohlbecker wrote:
> code need to be cleaned up
done!
- 04:53 PM Revision a44d210c (cdm-dataportal): ref #8403 removing rejected implementation
- 04:50 PM bug #8440 (Resolved): specimen accession numbers link to specimen page
- please review
- 04:48 PM Revision e69c4103 (cdm-dataportal): ref #8440 consistent display of type specimens: link to specimen page and showing preferredStableUri
- 04:06 PM Revision 2ac046d4 (taxeditor): Add missing dependency
- 03:52 PM bug #8448 (Resolved): Maps settings > Bounding box inconsistent
- 03:37 PM bug #8448 (Closed): Maps settings > Bounding box inconsistent
- according to the settings documentation the *Bounding box* needs to be entered in degree.
After fixing #8430 using... - 03:51 PM Revision 8e2d0259 (cdm-dataportal): ref #8448 changing the map setting to use the projection conform bbox
- 03:07 PM Revision 2e63da0d (cdm-dataportal): Merge tag '5.8.3' into develop
- tagging hotfix 5.8.3
- 03:07 PM Revision 51624a65 (cdm-dataportal): Merge branch 'hotfix/5.8.3'
- 03:07 PM Revision 7cc1655b (cdmlib): fix #7450 try to fix failing test when running in test suite
- 03:06 PM Revision e39effec (cdm-dataportal): ref #8430 fixing pojection definition for epsg:7777777 (euromed)
- 02:44 PM Revision 89eab8c6 (taxeditor): Revert "Fix potential NPE"
- This reverts commit 5e45f5399ffa158d92ef215ba484f3f230e6a5ae.
- 02:44 PM Revision 40ba0cf9 (taxeditor): Revert "Disable (unused) context menu"
- This reverts commit aa85a093ec65f0492e9d73cffd87f87be105e438.
- 02:39 PM Revision 49c7b44e (cdm-dataportal): ref #8430 fixing pojection definition for epsg:7777777 (euromed)
- 02:14 PM Revision 528e8632 (taxeditor): ref #7597 Fix potential class cast exception
- 01:44 PM feature request #8447 (Closed): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Also have in mind that the includeSharedTaxa parameter is valid for accepted taxa, misapplications and pro parte syno...
- 01:42 PM bug #8446 (Closed): Allow setPublish for subtree to filter for hybrids
- In E+M we do not want to set the publish flag to true for hybrids so we need a filter to do so. Alternatively we shou...
- 01:39 PM feature request #7450 (Resolved): Allow setPublish for subtree to include misapplied names and pro parte synonyms
- Applied in changeset commit:cdmlib|5fb16579cd1fbce2bfa19f12bebc0d4711b23b90.
- 01:39 PM Revision 5fb16579 (cdmlib): fix #7450 allow setPublish for subtree to include misapplied names and pro parte synonyms
- 12:15 PM task #8445 (Closed): improve service description
- a.mueller wrote:
„UTIS connects the web services of the Pan-European Species directories Infrastructure (EU-Nomen)... - 09:31 AM Revision 5593cba0 (cdmlib): fixing NPE in DerivedUnitFacadeCacheStrategy.getUnitNumber()
08/06/2019
- 02:40 PM Revision 8a1e1e44 (cdmlib): cleanup
- 02:14 PM Revision 27296e89 (cdmlib): cleanup and stream API for ForSubtreeConfigurator
- 02:13 PM Revision 98df38b9 (cdmlib): pretty print testSetSecundumForSubtree test data
- 01:16 PM Revision 8f81816e (taxeditor): adapt setPublishFlagConfigurator constructor call
- 01:14 PM Revision 278d7608 (taxeditor): adapt setPublishFlagConfigurator constructor call
- 01:03 PM Revision a138d490 (taxeditor): adapt setPublishFlagConfigurator constructor call
- 12:53 PM Revision e867c225 (cdmlib): ref #7450 implement interfaces and signatures for setPublishForSubtree for misapplications and ppSyns (not yet implemented)
- 12:44 PM Revision de671fe5 (cdmlib): minor
- 12:35 PM Revision 16bef6ee (taxeditor): ref #7597 Invoke aggregation in parallel thread
- - add progress monitor
- 12:35 PM Revision aa85a093 (taxeditor): Disable (unused) context menu
- 12:35 PM Revision 50cf49ac (taxeditor): Fix potential NPE
- 12:35 PM Revision 5e45f539 (taxeditor): Fix potential NPE
- 12:34 PM Revision e7eee67d (cdmlib): ref #7597 Add progress monitor to aggregation service call
- 11:19 AM Revision ab6c57c0 (cdmlib): ref #8365: fix NPE in abcd tests
- 10:02 AM Revision 4e9e938f (cdmlib): use configurator for setPublish flag
08/05/2019
- 04:19 PM Revision f928093b (cdmlib): ref #7450 revert the incorrect c&p from last commit
- 04:11 PM Revision 53df0a40 (cdmlib): ref #7450 use PublishForSubtreeConfigurator in TaxonNodeService
- 04:11 PM Revision c1a30095 (cdmlib): cleanup
- 04:11 PM Revision 878c54ea (cdmlib): ref #8429 add SchemaUpdater_58_581 and implement update script for setOfReferences renaming
- 04:11 PM Revision 7bd0a31e (cdmlib): minor
- 02:01 PM bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
- ... please also consider a "is used more then once" check for such relations
- 12:42 PM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
- is this only an UI issue or is it also a cdmlib-security issue?
- 12:14 PM bug #8443 (New): a user with only rights on a subtree can edit taxa and names of another subtree
- the user with rights on a subtree is able to edit taxa outside the defined subtree. The only limitation is creation a...
- 10:58 AM task #8435: Reduce logging amount of exports and other long running tasks
- Katja, can you work on this?
- 10:55 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Have you tested with termType = Character which is a subtype ... - 10:37 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Müller wrote:
> Have you tested with termType = Character which is a subtype for Feature. I don't think the ... - 09:59 AM Revision f93dab43 (cdmlib): Revert "minor - fix merge conflict"
- This reverts commit fc3932ac4dd186b6f5809863356912f949ae202d.
- 09:51 AM Revision fc3932ac (cdmlib): minor - fix merge conflict
08/02/2019
- 08:39 PM feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
- Similar to those created for Reference (#6663).
The fields are
* last retrieved
* externalId
* externalLink
... - 08:25 PM feature request #8441 (Closed): Add FeatureState class
- ... for inapplicableIf and onlyApplicableIf states and add/change the relationships to TermNode
- 08:22 PM bug #8429 (In Progress): Rename DeterminationEvent_Reference.setOfReferences_id
- For now we do the column renaming with a model change.
DeterminationEvent_Reference.setOfReferences_id = reference... - 05:54 PM Revision 48468c67 (cdm-dataportal): ref #8440 specimen accession numbers link to specimen page
- 05:53 PM feature request #8403 (In Progress): name page: show types specimens as expandable derivate tree
- code need to be cleaned up
- 05:52 PM feature request #8403 (Rejected): name page: show types specimens as expandable derivate tree
- This feature request has been rejected in favor of #8440
- 05:51 PM bug #8440 (Closed): specimen accession numbers link to specimen page
- The specimen accession numbers, aka specimen labels, should be clickable links to the specimen page.
This is neede... - 05:47 PM Revision 7449720a (cdmlib): ref #8365 adding combination of collection code and unit number as specimenLabel to DerivedUnitFacade
- 05:29 PM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- So we definetely should write tests before closing.
- 05:27 PM task #8437 (Feedback): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Have you tested with termType = Character which is a subtype for Feature. I don't think the "Restrictions" implementa...
- 11:19 AM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- please can you review my changes?
- 05:11 PM feature request #8439 (New): Improve Layout of Registration in Name page and Search page
- Improve Layout of Registration in Name page and Search page.
Example http://phycobank.org/100628
: ref #8422 dependency handling finalized in PolytomousKeyGenerator
- 04:42 PM Revision 54b77a28 (cdmlib): minor
- 04:42 PM Revision 73f1250e (cdmlib): ref #8422 add dependencies to PolytomousKeyGenerator
- 04:42 PM Revision 710cb94e (cdmlib): ref #8422 fix reuse of feature if it shouldn't
- 12:01 PM task #8438 (Closed): remove featureTree/* web services in August 2021 if they are unused
- If the featureTree/* web services are no longer used since 2 years we can safely remove them.
Check the cdm-server... - 11:56 AM task #8434 (Closed): Change FeatureTree contollers to TermTree controllers
- 11:55 AM task #8166 (Resolved): Adapt dataportal to term structure changes
- check taxon profile settings in a couple of test portals:
* Cichorieae
* Corvidea
* Palmweb
* Cyprus - 11:54 AM Revision 9725f08e (cdm-dataportal): ref #8166 using ternmType filter to restrict to feature trees only
- 11:51 AM Revision fc3e5e6e (taxeditor): ref #8385: fixes in preferences - continue
- 11:48 AM Revision 515bfcff (cdmlib): ref #8385: fix TermOrder Enum
- 11:18 AM task #8436 (Resolved): featureTree/* services should filter the termTrees by the TermType Feature
- Applied in changeset commit:cdmlib|0f5323457637b6f2214287eb3101c7db121540f5.
- 11:18 AM Revision 0f532345 (cdmlib): fix #8436 termTree/* services with termType filter and featureTree/* services restricted to feature trees only
- 11:18 AM Revision 2ef4c225 (cdmlib): ref #8437 using the listByRestriction method in favour of a new untested dao method & implementing page method in ITermTreeService
- 10:48 AM Revision c2a446b0 (taxeditor): ref #8385: fixes in preferences - getDefaults() for all pages
08/01/2019
- 09:49 PM Revision 14987030 (cdmlib): ref #8422 fix leaf handling and simplify and complete tests
- 09:49 PM Revision a9256c91 (cdmlib): ref #8422 handle single value branches better
- 09:49 PM Revision feedd788 (cdmlib): cleanup
- 09:49 PM Revision aabca655 (cdmlib): ref #8422 change sort order for multi-taxon or multi-state branches
- 06:01 PM Revision 8cf6974b (cdmlib): ref #8434 removing deprecated featureNode/* web service mapping as this was never used since one year
- 05:58 PM Revision 9dddc68a (cdm-dataportal): ref #8166 adapting dataportal to TermTree novelties: using new term tree controller endpoints
- 03:00 PM Revision 5420e50d (cdmlib): ref #8422 some fixes for merging in PolytomousKeyGenerator
- 03:00 PM Revision b820a890 (cdmlib): ref #8437 first implementation for listBy termType for TermTreeService, not yet tested
- 03:00 PM Revision 5f16d935 (cdmlib): minor
- 03:00 PM Revision e0d15cb3 (cdmlib): minor toString changes
- 03:00 PM Revision 0174fe98 (cdmlib): ref #8422 adding test for merge mode
- 03:00 PM Revision 3996640f (cdmlib): minor
- 03:00 PM Revision b3cf04bc (cdmlib): rename dependencies
- 02:59 PM task #8437 (In Progress): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- implemented but no tests yet, but maybe you can integrate into controller already
- 12:26 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- e.g.:
~~~java
public List<TermTree> list(TermType termType, Integer limit, Integer start, List<OrderHint> orde... - 01:23 PM bug #8385 (In Progress): Open issues in DB preferences
- 12:23 PM task #8436 (Closed): featureTree/* services should filter the termTrees by the TermType Feature
- Die featureTree/* Service-Endpunkte sollte selbe Verhalten anzubieten wie zuvor (#8434). In diesem Fall sollte hinter...
- 12:18 PM Revision b2205142 (cdmlib): ref #7597 Adapt to service changes and rename long running method
- 12:07 PM Revision 6ad4013c (cdmlib): fix typo
- 11:58 AM Revision aa3118b2 (cdmlib): ref #8435: differ between info and debug level
- 11:36 AM task #8435 (New): Reduce logging amount of exports and other long running tasks
- One single CDMLight export of the euromed database produces 49173 lines of logging like :
~~~
[euromed] 2019-07-3... - 10:51 AM Revision cad668ac (cdmlib): ref #8431: adaptions to show the export name in progress monitor
- 10:50 AM Revision 23157c56 (taxeditor): ref #8431: improve progress monitor/bar in editor for import/export
- 10:50 AM Revision 25a3ce1e (taxeditor): ref #8385: fixes for preferences
- 10:03 AM Revision 225e3aa7 (taxeditor): ref #7597 Adapt to service changes
- 10:02 AM Revision ed6a16ee (taxeditor): ref #7597 Remove taxon tree aggregation command and handler
- 10:01 AM Revision 85ba00f8 (taxeditor): add FIXME message
- 10:01 AM Revision 78aa2ad6 (cdmlib): ref #7597 Aggregation for each taxon based on associated specimens
- 09:08 AM feature request #7510 (Worksforme): Allow entering aggregated/statistical data for single specimens in character matrix
- Entering statistical information is possible if the Feature/Character is defined to allow that.
The data is then e... - 09:03 AM Revision 104ee19a (cdmlib): minor
- 09:03 AM Revision 4c0f844f (cdmlib): ref #8422 fix scoring for categoricalData
- 09:03 AM Revision 50e52e0f (cdmlib): minor
- 09:03 AM Revision ae7c9821 (cdmlib): ref #8422 let PKGenerator only work on TaxonDescriptions for now
- 08:49 AM Revision 50369001 (cdmlib): ref #8434 turing FeatureTree contollers into TermTree controllers
- 08:28 AM task #8434 (Closed): Change FeatureTree contollers to TermTree controllers
- The `FeatureTree` contollers need to be adapted to the changes which have been applied for #6794:
* rename Featur...
07/31/2019
- 07:09 PM Revision 062686a1 (cdm-dataportal): adding missing quotes which broke the profile image
- 06:54 PM Revision 34852f2d (cdm-dataportal): ref #8415 using accepted name uuid to get the types if no other taxa are in the homotypical group
- 06:43 PM Revision 02e8615c (cdm-dataportal): refactoring cdm_dataportal_taxon_page_specimens() to compose function
- 05:05 PM Revision 93040e10 (taxeditor): add polytomous key generation to character matrix (experimental)
- 04:03 PM feature request #8432 (In Progress): Improve "default" feature tree handling
- 12:58 PM feature request #8432 (In Progress): Improve "default" feature tree handling
- Definitions:
* **default feature tree** = term tree of type feature which holds all features in the database in a... - 03:41 PM feature request #8433 (Duplicate): Disallow user names with whitespace
- Allow only certain letter like [a-z][A-Z]_. Other usernames are errorprone.
Same for group names. - 03:20 PM bug #6523: Correct display of misspellings in synonymy
- Walter:
Also, erstmal, „orthographic variant“ gibt es anscheinend nur in der Botanik s.l.
Folgende Aussagen im C... - 03:06 PM task #8405 (Rejected): Adapt cdm-vaadin to term structure changes
- I deed, there is nothing to do about this in the cdm-vaadin project.
- 03:01 PM task #8406 (Resolved): specimens and occurrence code cleaning and harmonization
- Hi Katja,
can you please have a look if everything is as it was intended? - 02:58 PM bug #8395 (Closed): NullPointerException (NPE) in NameCatalogueController
- This is fully solved.
- 02:57 PM task #8414 (In Progress): occurrence controller code cleaning and harmonization
- 02:53 PM Revision 3d14fdcf (cdm-dataportal): ref #8415 avoiding uninitialized variable
- 02:40 PM Revision a41f5463 (cdm-dataportal): Merge tag '5.8.2' into develop
- tagging hotfix 5.8.2
- 02:40 PM Revision 4050c450 (cdm-dataportal): Merge branch 'hotfix/5.8.2'
- 02:40 PM Revision a77b6a1d (cdm-dataportal): fix #8430 fixing bbox transformation from data layer to base layer projection
- 02:32 PM bug #8426 (Closed): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
- findFirst() will returns an Optional describing the first element of this stream, or an empty Optional if the stream ...
- 02:15 PM Revision af8e4c4e (cdmlib): ref #8414 adding cycle detection to loadFieldUnitDTO()
- 01:56 PM bug #8431 (In Progress): missing status bar for cdm light export
- 10:23 AM bug #8431 (In Progress): missing status bar for cdm light export
- mail from AM:
beim Export von E+M via CDM light wird bei mir seltsamer Weise keine Statusbar angezeigt, die Prozen... - 10:33 AM feature request #8299 (Resolved): add typification column to scientific name and homotypical group in cdm light
- Applied in changeset commit:cdmlib|e05bda1e6ca35dfb77dba833f34203525024a9cb.
- 10:32 AM Revision e05bda1e (cdmlib): fix #8299: add typification columns to scientific name table of cdm light
- 10:27 AM feature request #8344 (Resolved): Cdm light export: add dummy line in simple facts table
- this is already implemented.
- 10:26 AM feature request #8322 (Resolved): add sortindex to cdm light export
- yes it is already implemented, please review
- 09:04 AM bug #8430: maps zoom to wrong bbox with some layers
- This should now be fixed for all situations. Could you please take a second look?
- 08:45 AM bug #8430 (Resolved): maps zoom to wrong bbox with some layers
- Applied in changeset commit:cdm-dataportal|779840f48519040a2ab59db5b7881ef0a265d6a8.
- 08:43 AM bug #8430 (Closed): maps zoom to wrong bbox with some layers
- This problem has been fixed for `POINT` maps (#8347) but is not yet fully solved for `AREA` maps.
`openlayers_map.... - 08:45 AM Revision 779840f4 (cdm-dataportal): fix #8430 fixing bbox transformation from data layer to base layer projection
07/30/2019
- 09:53 PM bug #8429: Rename DeterminationEvent_Reference.setOfReferences_id
- The reason is that the references are called setOfReferences while the getter is getReferences.
Simplest solution:... - 05:25 PM bug #8429 (Closed): Rename DeterminationEvent_Reference.setOfReferences_id
- ~~~
[algaterra_new] 2019-07-30 15:49:23,008 INFO [qtp532445947-4997] [eu.etaxonomy.cdm.remote.controller.BaseControl... - 09:43 PM bug #8426: IndexOutOfBoundsException during serialization of RegistrationWorkingSet
- isn't this very easy to fix? Therefore I put it to 5.9 (and also tried to fix in the meanwhile).
Open question: do... - 09:40 PM bug #8426 (Resolved): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
- Applied in changeset commit:cdmlib|6b0f8cdfe1643a96638e02dbd924ffd0007785f8.
- 05:09 PM bug #8426 (Closed): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
IndexOutOfBoundsException during serialization of RegistrationWorkingSet:
~~~
[flora-central-africa] 2019-07-...- 09:40 PM Revision ddaea59b (cdmlib): ref #8422 PolytomousKeyGenerator: improving sort order and fixing score for quantitative data, + further refactoring
- 09:37 PM Revision 6b0f8cdf (cdmlib): fix #8426 fix IOOB Exception in RegistrationWorkingSet serialization
- 05:19 PM bug #8428 (Closed): NPE in ClassificationServiceImpl.loadTreeBranchToTaxon()
~~~
[euromed] 2019-07-30 16:07:08,780 INFO [qtp532445947-5019] [eu.etaxonomy.cdm.remote.controller.ClassificationP...- 05:14 PM Revision 2d0650ce (cdmlib): ref #8422 refactoring PKGenerator+test and minor fixes
- 05:11 PM bug #8427 (Closed): LazyInitializationException in NameController.doGetTaggedFullTitle()
- found in production server log:
* /cichorieae/name/ddf9cc53-cdfc-45d5-98f9-1e5ef9a8e4df/taggedFullTitle
* /cichor... - 03:27 PM feature request #8403: name page: show types specimens as expandable derivate tree
- please see http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/f5048e6e-303a-41f6-933b-84c678e...
- 11:35 AM feature request #8403 (Resolved): name page: show types specimens as expandable derivate tree
- 03:16 PM task #8425 (Closed): FieldUnitDTO: remove taxonRelatedDerivedUnits
- FieldUnitDTO has the field `taxonRelatedDerivedUnits`. This can be removed, this is a relict of a first approach to ...
- 03:12 PM task #8424 (New): evaluate publish flags in the full derivative path
- eu.etaxonomy.cdm.remote.controller.OccurrenceController.doGetOccurencesDTO(@PathVariable(value="uuid") UUID uuid, Htt...
- 03:01 PM bug #8423 (Closed): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection<FieldUnitDTO> fieldUnits, HashMap<UUID,...
- 02:53 PM bug #8422 (In Progress): Make PolytomousKeyGenerator work (correctly)
- 02:53 PM bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
- 02:25 PM task #8406 (In Progress): specimens and occurrence code cleaning and harmonization
- 02:25 PM Revision a0be8d7e (cdm-dataportal): ref #8406 dapting portal to renamed controller endpoint: taxon/{uuid}/specimensOrObservationDTOs --> taxon/{uuid}/fieldUnitDTOs
- 02:22 PM Revision 2e09903a (cdmlib): ref #8414 renaming taxon/{uuid}/specimensOrObservationDTOs to taxon/{uuid}/fieldUnitDTOs
- 02:15 PM bug #8385: Open issues in DB preferences
- Passing the ticket back to Katja. We may have a look on it together, though.
- 02:14 PM feature request #8238: Allow interoperability between term trees
- Does not have to be solved in this milestone -> move to 5.10
- 01:52 PM feature request #8415 (Closed): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval
- 01:52 PM feature request #8415 (Resolved): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval
- Applied in changeset commit:cdm-dataportal|dfbc27b033a2eda86d74b57a4d14189f7d6e5cd0.
- 01:52 PM Revision dfbc27b0 (cdm-dataportal): fix #8415 using /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup service to speed up the type designation display
- 01:48 PM feature request #8390 (Closed): implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
- 01:46 PM Revision 7dde6846 (cdmlib): ref #8390 uncommenting typeDesignationsInHomotypicalGroup service endpoints
- 01:07 PM task #8414: occurrence controller code cleaning and harmonization
- http://test.e-taxonomy.eu/dataportal/preview/algaterra-new/cdm_dataportal/taxon/c3350592-db9d-44cb-80ed-29bfb685e3a0/...
- 12:09 PM Revision aa8cf7e6 (cdmlib): first implementation of /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
- 11:35 AM bug #8421 (Rejected): icons in compose_specimen_table_top_down() are not visible
- in `compose_specimen_table_top_down()` font awesome icons are added to the render array, but these are not getting di...
- 11:28 AM task #8420 (Closed): improve admin settings for specimens representations
- * The kind of representation of specimens lists needs to be selectable via a set of radio buttons.
* should the sett... - 11:25 AM task #8419 (In Progress): Harmonization of the different specimen representations
- **There are different kinds of "views" for specimens lists**
* some of them provide a pager others do not
* do op... - 11:21 AM task #8418 (Closed): specimens and occurrence links must not have a target=_blank attribute
- 11:01 AM task #8418 (Closed): specimens and occurrence links must not have a target=_blank attribute
- Even is this was frequently requested by users using the target attribute is in general considered an UX anti-pattern...
- 11:02 AM Revision cea59762 (cdm-dataportal): ref #8418 removing all target=_blank attributes from specimen representations
- 10:18 AM Revision f7a4716c (taxeditor): ref # 8135 Make textual type designation element non-experimental
- 10:14 AM bug #8417 (New): LazyInitializationException in TermDTO for media
- Im TaxonRelationshipsDTOTest, der ein einfacher UnitTest ist kommt es zu Problemen wegen der media die neuerdings an ...
- 09:20 AM feature request #8412 (In Progress): Remaining issues for cdm light export (II)
- 08:58 AM Revision ae177dac (cdm-dataportal): ref #8403 types specimens as expandable derivate tree in name page finally working
- 08:57 AM Revision 4c158e4e (cdm-dataportal): ref #8414 adapting portal to modified service mapping
- 08:44 AM Revision d2cbce25 (cdmlib): ref #8414 refactoring OccurrenceController:
- - method to load a single FieldUnitDTO
- adding all intermediate derivatives to the FieldUnitDTO
- renaming servi...
07/29/2019
- 03:14 PM Revision df79024a (taxeditor): Adapt to model change - (DescriptiveDataSet TermTree<Feature>)
- 02:31 PM Revision f79b990b (cdmlib): Remove wildcard from generics
- 02:21 PM Revision 10858926 (cdm-dataportal): using the /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup webservice to avoid fetching for each name in the group
- 02:20 PM Revision 961319fe (cdm-dataportal): ref #8406 clenaing and harmonization of the specimen related code in the dataportal
- 02:13 PM bug #8416 (Worksforme): Array to string conversion problem in render array produced for specimen page
- At least the specimen page for (B B GT 0024094) in phycobank ( http://edit.test/d7/phycobank/cdm_dataportal/occurrenc...
- 02:06 PM Revision 70b053e4 (cdmlib): ref #8406 cleaning up occurrence controller code
- 02:04 PM feature request #8415 (Closed): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval
- copied from #6380.
This webservice should be used to speed up `type_designations_for_synonymy_group($synonymy_grou... - 02:02 PM Revision dd49afb6 (cdmlib-apps): ref #6794 TermTreeNode-> TermNode in cdmlib-apps
- 01:59 PM task #8414 (Closed): occurrence controller code cleaning and harmonization
- eu.etaxonomy.cdm.remote.controller.OccurrenceController.doGetOccurencesDTO(@PathVariable(value="uuid") UUID uuid, Htt...
- 12:36 PM feature request #8413 (New): Abcd import with file containing list of unit ids
- For a bulk import it is necessary to have the possibility to import all specimen of a list of unit IDs
- 10:36 AM bug #6627 (Resolved): Remaining cdm light issues
- created a new "remaining issues" ticket and close this one
- 10:35 AM feature request #8412 (In Progress): Remaining issues for cdm light export (II)
- * Instance name and instance ID
* Discuss whether we should handle the citation facts separate to the other simple... - 10:29 AM feature request #8411 (New): additional requirements for export/import path selection
- mail from w.b.
Hallo,
ein nice to have, wohl vor allem für Leute die nicht ständig in einer Datenbank arbeiten, ...
07/27/2019
- 01:22 AM Revision 3fcd7421 (cdmlib): fix PolytomousKeyGenerator (not yet ready)
- 01:22 AM Revision 90bce0d8 (cdmlib): add some factory methods
- 01:21 AM Revision 1ed092db (cdmlib): allow handle multiTaxon nodes in polytomousKey.print
- 01:20 AM Revision 8c7285ac (cdmlib): fix asList(Recursive) methods
- 01:19 AM Revision dc572c3e (cdmlib): adapt DescriptiveDataSet to allow also descriptive systems with features not only characters
- 01:18 AM Revision 21fbf707 (cdmlib): cleanup
07/26/2019
- 05:53 PM feature request #8410 (Closed): Add nomenclatural code edition to ruleConsidered in TaxEditor
- for nomenclatural status, name relation (and hybrid relation once it exists).
Make the field only available if rul... - 03:14 PM feature request #8334 (Resolved): Move sources for type designations to details view
- 03:14 PM Revision 0fcac92e (taxeditor): ref #8334 Move sources for type designations to details view
- 03:00 PM Revision 2ac060fb (taxeditor): ref #8334 code cleanup
- 02:51 PM feature request #8135 (Resolved): Implement verbatim type information in TaxEditor
- 02:50 PM Revision 577d6cf2 (taxeditor): ref #8135 Decrease text field size
- 02:47 PM Revision 6fa52600 (taxeditor): ref #8135 Remove designation checkbox from super class
- 02:38 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- Andreas Müller wrote:
> To me there seems to be a misunderstanding. My understanding of #8365#note-8 is that is fine... - 02:19 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- One last question: is the original task of the ticket to deduplicate collection code if necessary now implemented in ...
- 02:13 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- To me there seems to be a misunderstanding. My understanding of #8365#note-8 is that is fine to have brackets for typ...
- 01:58 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- Andreas Kohlbecker wrote:
> Users frequently enter the collection code with the accession number which can cause to ... - 01:50 PM feature request #8180 (In Progress): Add property term "Presence/Absence" to CDM default terms
- As the current solution works for additivity maybe we should postpone creating the two new terms until the above ques...
- 01:46 PM feature request #8180: Add property term "Presence/Absence" to CDM default terms
- Query for above request:
~~~sql
SELECT REPLACE (uri, 'https://terms.tdwg.org/wiki/ft:','')
FROM DefinedTermBase... - 01:31 PM feature request #8180: Add property term "Presence/Absence" to CDM default terms
- Hallo,
ich sehe gerade das folgende Terme doppelt vorkommen in der Ontologie:
"REPLACE (uri, 'https://terms.tdw... - 01:00 PM Revision 78c76c38 (taxeditor): ref #8238 Remove too specific generics from TermTree and TermNode
- 12:28 PM Revision 607b4f94 (cdmlib): add test to cdmlib-cache pom
- 11:35 AM Revision 09092e90 (taxeditor): cleanup
- 11:07 AM task #8166: Adapt dataportal to term structure changes
- Yes, we should at least do a string search for "FeatureTree". Also a string search on "FeatureNode".
- 09:27 AM task #8166 (New): Adapt dataportal to term structure changes
- I am reopening this issue since the data portal code even if being fully functional might need to be adapted to the ...
- 08:53 AM task #8166 (Worksforme): Adapt dataportal to term structure changes
- Andreas Müller wrote:
> Are there any changes needed? Currently it looks like most things work (except maybe for the... - 11:06 AM feature request #8238 (In Progress): Allow interoperability between term trees
- 11:06 AM Revision 97654d95 (cdmlib): ref #8238 Allow adding term subtypes to TermRelationBases
- 10:57 AM feature request #8409 (Closed): add nomenclatural code select to NameRelationField
- see #8398 for details
- 10:55 AM feature request #8408 (Closed): add nomenclatural code select to NomenclaturalStatusRow
- see #8398 for details
- 10:00 AM Revision 9b5133b8 (taxeditor): ref #8135 re-enable textual type designation
- 09:50 AM Revision 5405bf47 (cdmlib): fix problem in CacheLoader
- 09:02 AM Revision a5a2cb3d (cdmlib): Revert "Revert "update cached model for schema version 5.8""
- This reverts commit 6fbe8628082d5f62797062febd0921d93708c275.
- 09:01 AM Revision d6e586ac (taxeditor): Revert "Revert "update test H2 database to schema version 5.8""
- This reverts commit 8b0979c778511b794d7873eda4899db15c8232f3.
- 08:52 AM Revision 8b0979c7 (taxeditor): Revert "update test H2 database to schema version 5.8"
- This reverts commit 50cdece7f361217c57f926555acc006a73d5e151.
- 07:55 AM Revision 6fbe8628 (cdmlib): Revert "update cached model for schema version 5.8"
- This reverts commit 2be44701da8b296a6ac1008376bdda834b2ffd65.
- 01:55 AM Revision be95b04a (cdmlib): minor
- 01:46 AM Revision 5bb3ff87 (cdmlib): cleanup
- 01:28 AM Revision 21410a84 (cdmlib): cleanup
- 01:05 AM Revision 45f16cd4 (cdmlib): minor
- 01:00 AM Revision 5b2a2319 (cdmlib): minor
- 12:56 AM Revision a5d61a3f (cdmlib): minor
- 12:46 AM Revision f2c629ce (cdmlib): minor
- 12:29 AM Revision ead8847b (cdmlib): minor
- 12:11 AM Revision c0951a03 (cdmlib): cleanup TermTree.clone
- 12:11 AM Revision a08b6fbc (cdmlib): cleanup, javadoc and test for notnull check for termtype in TermTree
07/25/2019
- 11:13 PM task #8405: Adapt cdm-vaadin to term structure changes
- Are there any changes needed? Vaadin compiles and does not really make use of TermTree(former FeatureTree) so it is m...
- 10:16 AM task #8405 (Rejected): Adapt cdm-vaadin to term structure changes
- the vaadin editor needs to be adapted to the changes applied in the context of #6794
- 11:10 PM task #8166: Adapt dataportal to term structure changes
- Are there any changes needed? Currently it looks like most things work (except maybe for the Specimen page, is this c...
- 05:42 PM Revision 845a6a70 (taxeditor): ref #6794 Replace FeatureTreeService with TermTreeService
- 04:20 PM Revision 53c7a226 (cdmlib): ref #6794 rename other TermTree.NewInstance methods and set old version to deprecated
- 04:08 PM Revision 2617ad64 (cdmlib): update javadoc for TermTree
- (cherry picked from commit 14b218305dfe9023a44d8c7da6e33715a6ef4ba6)
- 04:08 PM Revision 06de8afc (cdmlib): ref #6794 rename TermTree.NewInstance and set old version to deprecated
- (cherry picked from commit 08b758e2bfba66c82fbc5a636e455edcccb9fa11)
- 03:22 PM Revision 7a26e61a (cdmlib): ref #8407
- 03:21 PM Revision 98b0b483 (cdmlib): remove createDefaultFeatureTree from ITermTreeService
- 03:20 PM Revision 549e8cc5 (cdmlib): ref #6794 rename IFeatureTreeDao in ITermTreeDao
- 02:54 PM task #8336 (Duplicate): Unignore FeatureTest
- 02:50 PM bug #8407 (New): Fix "FeatureTest"
- Fix "FeatureTest" (or may now TermTreeTest) which checks the correkt behavior for exporting (and importing?) TermTree...
- 01:45 PM Revision 160f1cbd (taxeditor): ref #6794 Fix compile error
- 01:16 PM task #8406 (Closed): specimens and occurrence code cleaning and harmonization
- ## cdmlib-remote
issues copied to #8414
## data portal
* There are different kinds of "views" on specimens l... - 12:51 PM Revision ca7468b6 (cdm-dataportal): ref #8403 moving compose_specimens_table_bottom_up() to occurences.inc and renaming parameter in compose_specimen_array()
- 12:48 PM Revision 84849c31 (cdm-dataportal): ref #8403 extracting method compose_specimens_table_bottom_up()
- 12:27 PM Revision 8b7ea5be (taxeditor): ref #8281 adapt TaxEditor test data to doubtful flag in TaxonNode
- 12:25 PM Revision 43613a08 (taxeditor): ref #7334 adapt TaxEditor tests to new schema (delete partial and proparte)
- 11:15 AM Revision 68467d82 (cdm-dataportal): name type designation status bold - adapting tests
- 11:15 AM Revision 6cf1445b (cdm-vaadin): adapt vaadin tests to new schema version
- 11:10 AM Revision ad0a82ca (cdm-vaadin): adapt vaadin tests to new schema version
- 11:04 AM Revision 1f00087f (cdm-dataportal): name type designation status bold
- 11:03 AM Revision c8e1c376 (cdm-vaadin): adapt vaadin tests to new schema version
- 10:53 AM Revision 0f8bf4e9 (cdm-vaadin): update vaadin test H2 to new schema version 5.8
- 10:25 AM Revision 2d6c8502 (cdmlib): commenting doGetTypeDesignationsInHomotypicalGroup() methods which have been comitted too early
- 10:17 AM Revision 2be44701 (cdmlib): update cached model for schema version 5.8
- 10:17 AM Revision 049213b6 (cdmlib): cleanup
- 10:13 AM bug #8395 (Resolved): NullPointerException (NPE) in NameCatalogueController
- Applied in changeset commit:cdmlib|dd4347b628d5737e2682c8d95fcb0e1aff9e7ad7.
- 10:13 AM Revision 10d502dc (cdmlib): ref #8394 adding nameUUIDs to NameCatalogueController responses
- 10:13 AM Revision 9c5bef97 (cdmlib): ref #8394 adding nameUuid to NameCatalogueController responses
- 10:13 AM Revision dd4347b6 (cdmlib): fix #8395 avoiding NPE in NameCatalogueController.getDatasetIdName()
07/24/2019
- 08:13 PM Revision 50cdece7 (taxeditor): update test H2 database to schema version 5.8
- 08:10 PM Revision cb89f4f7 (taxeditor): ref #6794 adapt TaxEditor to new term structure (rename FeatureNode and FeatureTree)
- 07:50 PM feature request #8404 (Resolved): Add update step list within updaters
- 04:23 PM feature request #8404 (Closed): Add update step list within updaters
- currently it is needed to add the step externaly to the step list which leads to errors and requires unnecessary code
- 07:50 PM feature request #8281 (Resolved): Doubtful flag for TaxonNode
- still need to update E+M data
- 07:49 PM bug #4884 (Resolved): Update Reference_AUD.refType to allow NULL
- 07:48 PM feature request #8398 (Resolved): Add nomenclatural code edition to ruleConsidered
- Applied in changeset commit:cdmlib|3b49c84a0287d1f78acb49ff1270a38c679cfd3a.
- 07:44 PM Revision 973dce58 (cdmlib): update H2 test DB
- 07:37 PM Revision bd62ef07 (cdmlib): ref #7470 update script correct keys for TextualTypeDesignation_LanguageString
- 07:36 PM Revision 856dffcf (cdmlib): ref #8404 further cleanup for stepList integration
- 07:34 PM Revision f628f668 (cdmlib): ref #7470 add TextualTypeDesignation to FullCoverageDataGenerator and add Adder to TaxonName
- 06:13 PM Revision d9b56bd4 (cdmlib): ref #4884 allow null for Reference_AUD.refType
- 06:12 PM Revision 68768f85 (cdmlib): ref #4884 unify datatype handling in schema updaters
- 06:11 PM Revision 956f26a0 (cdmlib): cleanup
- 05:15 PM Revision 975de0cc (cdm-vaadin): ref #8397 adding default status message as hint to phycobank index
- 05:09 PM Revision 30e50105 (cdm-vaadin): adding default status message as hint to phycobank index
- 04:24 PM Revision 99e01f35 (cdmlib): ref #8404 Add update step list within updaters
- 02:56 PM feature request #8402 (Closed): ordering typedesignations in name and taxon page
- 02:56 PM feature request #8402 (Resolved): ordering typedesignations in name and taxon page
- Applied in changeset commit:cdm-dataportal|fb939fdc818762b23215321ff183be8700e88161.
- 02:56 PM Revision fb939fdc (cdm-dataportal): fix #8402 fixing broken type designatin compare function
- 02:55 PM Revision 6e2c4f1a (cdm-dataportal): fix 8402 fixing broken type designatin compare function
- 02:45 PM Revision 9c12cb7f (cdm-dataportal): name type designation status bold
- 01:07 PM Revision 2154d631 (cdm-dataportal): typedesignation status and registered name bold also in name page
- 12:18 PM task #8363 (Worksforme): PESI SOAP service seems to return duplicate records
- It turned out that the duplicates are not in the PESI response but that they an effect of an error in the downstram p...
- 12:02 PM task #8363: PESI SOAP service seems to return duplicate records
- I introduced this while I was working on the ticket overview page for Phycobank: https://dev.e-taxonomy.eu/redmine/pr...
- 10:27 AM task #8363: PESI SOAP service seems to return duplicate records
- Interesting that the UTIS project has a category utis ;-)
- 12:01 PM Revision 9cb9a9cf (cdmlib): #8398 add botanical codes prior to 1990
- 11:45 AM Revision 39cb02e8 (cdmlib): minor
- 11:45 AM Revision 7b9ed797 (cdmlib): ref #7334 remove TaxonBase.proParte and partial and ref #8398 add codeEditon to nomStatus and nameRelations
- 11:24 AM Revision c5564cac (cdmlib): ref #6794 remove FeatureNodeService from BatchValidationUtil
- 11:20 AM Revision d10ceac8 (cdmlib): ref #6794 delete FeatureDao
- 11:14 AM Revision 62779ba1 (cdmlib): ref #6794 javadoc update FeatureTree -> TermTree
- 11:13 AM Revision cf4196d1 (cdmlib): ref #6794 some adaptations in Jaxb to FeatureTree -> TermTree
- 11:12 AM Revision 36fc6b9d (cdmlib): ref #6794 adapt jsonConfigurations.xml from FeatureTree/Node -> TermTree/Node
- 11:11 AM Revision 85bfea3a (cdmlib): ref #6794 add TermTreeService and TermNodeService to httpInvokerServices
- 11:10 AM Revision f9e5c38d (cdmlib): ref #6794 remove FeatureTree from some hibernate.cfgs again
- 11:08 AM Revision 1ac56bd8 (cdmlib): ref #8281 add doubtful to TaxonNode (remaining)
- 11:06 AM Revision 7c2426b5 (cdmlib): remove uplaced, excluded, partial and proparte from TaxonBase test data
07/23/2019
- 10:17 PM Revision 4f16dfd5 (cdmlib): ref #8281 add doubtful to TaxonNode
- 08:42 PM Revision 3b49c84a (cdmlib): fix #8398 add nomenclatural code edition to nomStatus, NameRelationship and HybridRelationship and make RuleConsidered an embedded class
- 08:39 PM Revision ec4afe76 (cdmlib): fix potential NPE in GatheringEvent.clone
- 08:38 PM Revision 54fefe54 (cdmlib): cleanup
- 06:45 PM Revision 445df273 (cdm-dataportal): typedesignation status and registered name bold
- 06:38 PM Revision ac31a390 (cdm-dataportal): adding PESI as commented provider option
- 06:37 PM Revision c040bba0 (cdm-dataportal): adding margin to name page name
- 06:03 PM feature request #8403 (Rejected): name page: show types specimens as expandable derivate tree
- In the name page, type specimens used in type designations should be expandable like in the taxon page
- 05:58 PM feature request #8402 (Closed): ordering typedesignations in name and taxon page
- The typedesignation in the name and taxon page are not yet well ordered. The sort order should follow the order of th...
- 04:39 PM bug #6523: Correct display of misspellings in synonymy
- Guten Morgen,
ich bin hinsichtlich einer endgültigen Lösung leidenschaftslos und kann nicht mit eigenen Vorschläg... - 04:15 PM bug #8400 (Closed): scientific names in Aphia client responses are missing authors citation
- 03:49 PM bug #8400 (Closed): scientific names in Aphia client responses are missing authors citation
- 04:14 PM bug #8401 (Closed): WoRMS client returns synonym for accepted name
- 04:14 PM bug #8401 (Resolved): WoRMS client returns synonym for accepted name
- Applied in changeset commit:utis-core|b2cf9c25798fa510b3eda5b8d77630e1da1e9072.
- 03:58 PM bug #8401 (Closed): WoRMS client returns synonym for accepted name
- 04:14 PM Revision b2cf9c25 (utis-core): fix #8401 using accepted name id
- 04:12 PM feature request #8355 (Closed): implement client adapter for phycobank
- 04:12 PM Revision e2d4f39c (utis-core): ref #8400 adding missing authorship information to names
- 04:09 PM feature request #8360 (Worksforme): paging results of /classification/{taxonId}/children webservice
- this has been solved in bug #6151
- 04:06 PM bug #6151 (Closed): implement pager for search service
- 03:33 PM feature request #7975: Implement a block to display name relations
- Andreas Kohlbecker wrote:
> In the developer standup today we almost already decided for adding an enumeration field... - 03:31 PM bug #8399 (New): show nomenclatural code edition for NameRelationship and NomenclaturalStatus
- see #7975#note-31 for details
- 01:27 PM feature request #8398 (Closed): Add nomenclatural code edition to ruleConsidered
- copied from #7975#note-31 :
"... adding an enumeration field to NameRelationship and to NomenclaturalStatus to al... - 01:20 PM feature request #6794 (In Progress): Improve term structure
- 11:27 AM feature request #8396 (New): make "not in classification warning" configurable
once completed remove
~~~css
.messages--warning {
display: none;
}
~~~
from phycobank portal- 11:24 AM task #8392: Types in PhycoBank
- the type status in the name page should be bold but
~~~css
.node-cdm-name .typeDesignations .status {
font-wei... - 07:20 AM Revision c5710844 (utis-core): PhycobankClient linking to dataportal name page, ref #8394
07/22/2019
- 06:42 PM Revision cbfdd05c (cdmlib): ref #6794 ignore FeatureTest
- 06:42 PM Revision d9fa828c (cdmlib): cleanup
- 06:41 PM Revision 2f72f4da (cdmlib): ref #6794 add TermNodeService and TermTreeService and make FeatureXXX services deprecated
- 06:39 PM Revision eb9880a0 (cdmlib): ref #6794 rename some parameters, methods and classes
- 06:13 PM Revision 15baf16b (utis-core): AbstractCdmServerClient responses with taxon.url, ref #8394 - switching back to production server
- 06:06 PM Revision b761d7d6 (utis-core): AbstractCdmServerClient responses with taxon.url, ref #8394
- 06:05 PM Revision 36386216 (cdm-dataportal): ref #8388 UTIS search block: switching to production system for UTIS
- 06:03 PM Revision e27e3ff2 (cdm-dataportal): ref #8388 UTIS search block: linking to taxon urls
- 03:23 PM bug #8395 (Closed): NullPointerException (NPE) in NameCatalogueController
- This NPE problem currently breaks searching for "Planothidium" in phycobank via UTIS
~~~
Caused by: java.lang.Nu... - 03:19 PM feature request #8394 (New): org.cybertaxonomy.utis.tnr.msg.TaxonName add URL field
- For phycobank and other name focused data providers it is crucial that the name url and identifier can be transported...
- 02:42 PM feature request #8180 (Feedback): Add property term "Presence/Absence" to CDM default terms
- 01:38 PM Revision 11bdf5c4 (cdmlib): ref #6794 rename TermTreeNode -> TermNode
- 01:37 PM Revision 77dad5ec (cdmlib): ref #6794 rename getFeatureNode -> getTermNode in cdmlib-print
- 01:35 PM Revision 41061791 (cdmlib): ref #6794 rename TermTreeNode -> TermNode
- 01:32 PM Revision 10ae9cf0 (cdmlib): ignore ConfigFileUtilTest.testGetFolderSeperator
- 01:31 PM Revision 76463827 (cdmlib): ref #6794 rename TermTreeNode -> TermNode
- 12:23 PM Revision cd1003b3 (cdm-dataportal): Merge tag '5.8.1' into develop
- tagging hotfix 5.8.1
- 12:22 PM Revision 485045db (cdm-dataportal): Merge branch 'hotfix/5.8.1'
- 12:13 PM Revision 85669a85 (cdm-dataportal): ref #7975 implementing settings for name relationship lists - all name rels enabled by default
- 12:08 PM Revision 74b1edb3 (cdm-dataportal): ref #8347 fixing wrong projection transformation for data maps - improved version
- 08:28 AM feature request #8390 (In Progress): implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
- 08:05 AM bug #8393 (New): restarting utis-webapp causes OverlappingFileLockException
- This happens after changing the last updated timestamp of the '/etc/jetty8/contexts/eubon-utis-1.3.xml'
~~~
java.... - 07:48 AM bug #8340 (New): is accepted for Footnotes missing and with wrong index
- I think there is nothing to do about this ticket as long #8339 is not decided by 100%.
07/19/2019
- 11:28 PM Revision 3af337bb (cdmlib): ref #6794 finalize FeatureTreeMover (update treeindex)
- 11:19 PM Revision d621df66 (cdmlib): minor
- 10:24 PM Revision 74d92b60 (cdmlib): ref #6794 minor adaptations of tests
- 09:13 PM Revision 40b05355 (cdmlib): ref #6794 remove duplicate TermRelationshipType in test/hibernate.cfg.xml
- 09:03 PM Revision ab5b84ab (cdmlib): ref #6794 remove FeatureTree from hibernate.cfg
- 08:57 PM Revision 0774bb03 (cdmlib): ref #6794 remove FeatureTree class
- 08:45 PM Revision 3048fbc9 (cdmlib): ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
- ref #6794 add TermRelation and TermRelationBase
- 08:42 PM Revision 17ad77a7 (cdmlib): ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
- 08:42 PM Revision b996fc8c (cdmlib): cleanup and ref #6794 rename TermTreeDaoImpl
- 08:42 PM Revision 645aca37 (cdmlib): ref #6794 add TermCollection and subclasses including TermTree
- 08:42 PM Revision 12740fe1 (cdmlib): ref #6794 change FeatureTree to TermTree
- 08:42 PM Revision 0d80c92f (cdmlib): ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
- 08:41 PM Revision e793a739 (cdmlib): ref #6794 update some imports to model changes and add ITermTree
- 06:14 PM Revision cf862eed (cdmlib): ref #6794 FeatureTreeMover first implementation (not yet ready)
- 06:14 PM Revision b153def6 (cdmlib): minor
- 06:14 PM Revision a2533432 (cdmlib): ref #6794 change schema version and add missing attributes to updateScript
- 06:14 PM Revision 0d79c535 (cdmlib): ref #6794 remove references to TermVocabulary.iterator()
- 06:14 PM Revision b61431ee (cdmlib): ref #8336 ignore FeatureTest
- 06:14 PM Revision 94907e20 (cdmlib): ref #6794 adapt TermCollection test data to boolean values in TermCollection
- 06:14 PM Revision 5ed46cc2 (cdmlib): add SchemaUpdater_55_58
- 06:14 PM Revision def33852 (cdmlib): ref #6794 add TermCollection and subclasses including TermTree
- 06:14 PM Revision b72678a6 (cdmlib): ref #6794 change FeatureTree to TermTree
- 06:14 PM Revision ec978653 (cdmlib): ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
- 06:14 PM Revision 18dfe77e (cdmlib): ref #6794 move term relations down to TermCollection
- 06:14 PM Revision 502547d1 (cdmlib): ref #6794 fix FeatureNodeServiceImplTest
- 06:14 PM Revision 810bbc08 (cdmlib): revert ClearDBDataSet to BlankDataSet to avoid foreign key problems during test data creation in SDDImportTest
- 06:14 PM Revision 4e5c4e73 (cdmlib): cleanup and ref #6794 rename TermTreeDaoImpl
- 06:14 PM Revision c27ce9cc (cdmlib): ref #6794 update script for graph_id and root_id
- 06:14 PM Revision 0761f817 (cdmlib): replace BlankDataSet.xml by ClearDBDataSet.xml
- 06:14 PM Revision 0d603043 (cdmlib): cleanup
- 06:14 PM Revision 1cc29785 (cdmlib): ref #6794 adjust hibernate configuration to new TermCollection and adjust test data
- 06:14 PM Revision 11df83d8 (cdmlib): ref #6794 add TermCollection and subclasses including TermTree
- 06:14 PM Revision b3340748 (cdmlib): ref #6794 change FeatureTree to TermTree
- 06:14 PM Revision 4b1a00be (cdmlib): ref #6794 update script for name changes in FeatureNode and TermVocabulary
- 06:13 PM Revision 2a933a18 (cdmlib): adapt SchemaUpdater to v5.5.1
- 06:13 PM Revision 3c06156c (cdmlib): ref #6794 rename TermVocabulary table to TermCollection and remaining rename FeatureNode -> TermTreeNode
- 06:13 PM Revision 3de5dbd5 (cdmlib): update service/dataset.xsd location
- 06:13 PM Revision 951c829f (cdmlib): ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
- 06:13 PM Revision 1c313fd1 (cdmlib): ref #6794 add TermRelation and TermRelationBase
- 06:13 PM Revision aa929473 (cdmlib): ref #6794 add term relation type to TermType and fix TermRelationType class
- 06:13 PM Revision 6645143a (cdmlib): ref #6794 adapt TermsDataSet-with_auditing_info in some packages after merge problem solved
- 06:13 PM Revision 28fc4fe7 (cdmlib): ref #8128 comment changes temporarily to make them compile
- 06:13 PM Revision cafaa5dd (cdmlib): ref #6794 add TermRelationshipType to test data
- 06:13 PM Revision 7c4fffcd (cdmlib): ref #6794 add TermRelationshipType
- 06:13 PM Revision 2f8559af (cdmlib): cleanup
- 06:13 PM Revision cf792057 (cdmlib): ref #7514 adapt MAN symbol to portal tests
- 06:13 PM Revision ae1cff7e (cdmlib): preparation for Feature.supportedClasses
- 06:13 PM Revision c220794b (cdmlib): ref #7514 update misapplied name symbols again
- 06:13 PM Revision ba7d0c9a (cdmlib): Add SchemaUpdater_55_551
- 04:38 PM bug #8340: is accepted for Footnotes missing and with wrong index
- Don't know what kind of feedback is needed from my side?
- 04:27 PM feature request #8134: Implement verbatim type information in dataportal
- related to issues in 5.9 so maybe we can implement it then
- 04:13 PM feature request #8354: taxonomic registration search by name finds also typifications for this name
- correct!
- 03:53 PM feature request #8354: taxonomic registration search by name finds also typifications for this name
- to me seems to be a cdmlib ticket, not cdm
- 04:12 PM task #7296: externalize redmine api key
- it is! The changes have been made in `cdmlib-ext/src/test/resources/services-external.properties`
- 03:55 PM task #7296: externalize redmine api key
- this is not a cdm ticket, please change category if cdmlib is also not correct
- 03:30 PM Revision 2674d5ca (cdm-server): Merge branch 'release/5.8.0' into develop
- 03:30 PM Revision 947103be (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 03:29 PM Revision a00fbdfa (cdm-server): updating poms for branch'release/5.8.0' with non-snapshot versions
- 03:28 PM Revision 45444313 (cdm-webapp): Merge branch 'release/5.8.0' into develop
- 03:28 PM Revision 82e5eca3 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 03:28 PM Revision 80b60b0b (cdm-webapp): updating poms for branch'release/5.8.0' with non-snapshot versions
- 03:28 PM Revision e2ea078b (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.8.0
- 03:27 PM bug #6627 (Feedback): Remaining cdm light issues
- should we close this ticket and create a new remaining (II) ticket with the now open issues.
Most of the tasks hav... - 03:19 PM Revision 598fbcc2 (cdm-dataportal): Merge branch 'release/5.8.0' into develop
- 03:19 PM Revision 1e0c0555 (cdm-dataportal): updating poms for branch'release/5.8.0' with non-snapshot versions
- 03:18 PM Revision 07bb851f (cdm-dataportal): release-preparation: production level css
- 03:18 PM Revision 8e8cd135 (cdm-vaadin): Merge branch 'release/5.8.0' into develop
- 03:18 PM Revision f7afd110 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 03:15 PM Revision e7aa1173 (cdm-vaadin): updating poms for branch'release/5.8.0' with non-snapshot versions
- 03:15 PM Revision 6bd46cc3 (cdm-vaadin): jenkins bumping cdmlib.version to 5.8.0
- 03:14 PM Revision 3c373afd (taxeditor): Merge branch 'release/5.8.0' into develop
- 03:14 PM Revision 0645911c (taxeditor): Merge branch 'release/5.8.0'
- 03:13 PM feature request #8273 (Feedback): abcd import: check for all specimen for DNA in DNABank
- Is this already implemented? It has a commit.
- 03:12 PM Revision f50c5671 (cdmlib): Updating develop poms back to pre merge state
- 03:12 PM Revision 51a0fa9a (cdmlib): Merge branch 'master' into develop
- 03:12 PM Revision d10f48ed (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 03:11 PM Revision 79e62164 (cdmlib): Merge branch 'release/5.8.0'
- 03:11 PM feature request #8322 (Feedback): add sortindex to cdm light export
- Isn't this already implemented. Review?
- 03:08 PM bug #8088 (Feedback): Open taxon node wizard issues
- can we close this and create a new ticket with open issues? There are already several commits on this ticket.
Let me... - 03:07 PM feature request #8182: show blast search result
- is this ready or should we create ticket for open issues?
- 03:04 PM feature request #8388 (Closed): UTIS search block
- completed
- 03:04 PM feature request #8344 (In Progress): Cdm light export: add dummy line in simple facts table
- is this fixed already? Please move to 5.10 if not
- 02:58 PM bug #8313: Multiple categorical data get deleted when clicked on in Character Matrix
- Move back to 5.8 as this seems to be ready in 5.8 milestone
- 02:52 PM Revision 2e017144 (cdmlib): updating poms for branch'release/5.8.0' with non-snapshot versions
- 02:49 PM Revision 1ec5ac22 (cdm-dataportal): ref #8388 UTIS search block: handling empty records and feedback on no results
- 02:48 PM Revision 1861c83d (cdm-dataportal): ref #8388 UTIS search block: handling empty records and feedback on no results
- 02:29 PM Revision 3b9b1523 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.8.0-SNAPSHOT
- 02:29 PM Revision be362251 (cdm-webapp): updating poms for 5.9.0-SNAPSHOT development
- 02:28 PM Revision 7071ef95 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.9.0-SNAPSHOT
- 02:27 PM Revision 0809fa50 (cdm-vaadin): jenkins bumping cdmlib.version to 5.8.0-SNAPSHOT
- 02:26 PM Revision 3f0ec1ee (cdm-vaadin): updating poms for 5.9.0-SNAPSHOT development
- 02:26 PM Revision e919d9f8 (cdm-vaadin): updating poms for 5.8.0 branch with snapshot versions
- 02:26 PM Revision 7de1009c (cdm-vaadin): jenkins bumping cdmlib.version to 5.9.0-SNAPSHOT
- 02:26 PM Revision 834c0fd2 (cdm-server): updating poms for 5.9.0-SNAPSHOT development
- 02:19 PM task #8392 (Worksforme): Types in PhycoBank
- >This layout is okay except of the dot at the end. If special types are concatenated ".;" should be avoided.
This ... - 02:16 PM task #8391 (In Progress): Name page shows complete name information (II)
- 02:11 PM task #8391 (In Progress): Name page shows complete name information (II)
- Continue #8108:
Remaining issues:
2. Inhaltlich sollten folgende Angaben zu sehen sein:
* ~~Taxa~~
... - 02:13 PM feature request #8108 (Resolved): Name page shows complete name information (I)
- copied remaining issues to new ticket to review and close this ticket for current milestone.
- 02:03 PM Revision 909ca8e0 (taxeditor): Updated version in pom / project files to taxeditor version : 5.9.0-SNAPSHOT and cdmlib version : 5.9.0-SNAPSHOT
- 02:03 PM Revision 076f3a94 (taxeditor): Updated version in pom / project files to taxeditor version : 5.8.0 and cdmlib version : 5.8.0
- 02:03 PM Revision d1eb8075 (cdm-vaadin): updating poms for 5.9.0-SNAPSHOT development
- 02:03 PM Revision 6a1b9a03 (cdm-vaadin): updating poms for 5.8.0 branch with snapshot versions
- 02:02 PM Revision 0abb074a (cdm-vaadin): jenkins bumping cdmlib.version to 5.9.0-SNAPSHOT
- 02:02 PM Revision 33dbd082 (cdm-dataportal): updating poms for 5.9.0-SNAPSHOT development
- 01:59 PM Revision 01423b1e (cdmlib): updating poms for 5.9.0-SNAPSHOT development
- 01:43 PM bug #6523 (In Progress): Correct display of misspellings in synonymy
- 10:55 AM bug #6523: Correct display of misspellings in synonymy
- @Walter: could you please check if Nepenthes tupmanniana is really meant to be a misspelling or is it rather a homony...
- 10:53 AM bug #6523: Correct display of misspellings in synonymy
- Hallo,
danke Henning für die Hinweise. Ich nehme mal einige weitere Leute mit ins Ticket, da dies sowohl von allgeme... - 01:38 PM Revision 24bff82e (cdm-dataportal): ref #8388 UTIS search block: better labels for providers
- 12:21 PM Revision bcb1dad5 (cdm-dataportal): ref #7975 implementing settings for name relationshiop lists - removing filter and offering all relation types
- 12:10 PM Revision a4f9d5b0 (cdm-dataportal): ref #7975 implementing settings for name relationshiop lists; new name page layout settings section
- 11:40 AM feature request #8304: Name page redirects to according taxon depending on query parameter
- I don't think that these requirements are contradict the current implementation with the 'global' switch. As far as I...
- 11:30 AM feature request #8304: Name page redirects to according taxon depending on query parameter
- As far as I remember there is already a user request for this. At least I have discussed it with users.
Also I thin... - 09:31 AM bug #6380 (Closed): typedesignations missing in homotypic group
- 09:30 AM bug #6380: typedesignations missing in homotypic group
- Andreas Müller wrote:
> Until then why can't we use a ws call that collects all type designations of a single name i... - 09:08 AM bug #6380: typedesignations missing in homotypic group
- Until then why can't we use a ws call that collects all type designations of a single name in the homotypic group for...
- 08:49 AM bug #6380: typedesignations missing in homotypic group
- Andreas Müller wrote:
> The result seems to be correct. Do I understand the code correctly that you only call 1 webs... - 08:04 AM bug #6380 (Feedback): typedesignations missing in homotypic group
- The result seems to be correct. Do I understand the code correctly that you only call 1 webservice per homotypical gr...
- 09:29 AM feature request #8390 (Closed): implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
- copied from #6380.
This webservice should be used to speed up `type_designations_for_synonymy_group($synonymy_grou... - 09:13 AM feature request #7932: Implement subject resolver for CdmPreferences
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Andreas K., do you already use the subject resolver in the pr... - 08:32 AM feature request #7932: Implement subject resolver for CdmPreferences
- Andreas Müller wrote:
> Andreas K., do you already use the subject resolver in the preference cache you use for vaad... - 09:11 AM task #4177 (Closed): display of name relationships in synonymy broken
- 08:33 AM task #4177 (Feedback): display of name relationships in synonymy broken
- So if this ticket is not about the comments in #note-3 and #note-4 but only about repairing and optimizing the name r...
- 08:05 AM Revision 502063b4 (cdm-dataportal): fixing broken link in settings
07/18/2019
- 10:41 PM Revision 579bc6e3 (cdm-dataportal): ref #8388 UTIS search block: fixing layout bug
- 08:49 PM feature request #7920: Possibility to define area specific status selection
- An open issue is that it should also be available for local prefs (where it is maybe more difficult to implement beca...
- 06:40 PM feature request #7920 (Feedback): Possibility to define area specific status selection
- To me this looks like being solved including the open issues. Please check and move open issues to a new ticket if ne...
- 08:46 PM feature request #8045: Improve handling of default values and override in local preferences
- with the new implementation of distribution status with different subjects if allowOverride=false in DB prefs this do...
- 08:04 PM feature request #8045: Improve handling of default values and override in local preferences
- For the above issues see also #8323#note-4
- 04:21 PM feature request #8045: Improve handling of default values and override in local preferences
- Andreas Müller wrote:
> Choosing "default" for local preference "nomenclatural status" has no effect. It uses the ex... - 01:26 PM feature request #8045: Improve handling of default values and override in local preferences
- For nomencl.Code. implementation is still missing or incorrect. Also we may discuss if in DB prefs we should allow "U...
- 01:09 PM feature request #8045: Improve handling of default values and override in local preferences
- Choosing "default" for local preference "nomenclatural status" has no effect. It uses the explicitly chosen values fr...
- 01:06 PM feature request #8045 (Feedback): Improve handling of default values and override in local preferences
- Looks like this has been implemented in 5.8 so I switch milestone.
Are there open issues? - 08:30 PM bug #8389 (Resolved): Correct handling of default values with allowOverride=false
- It looks like currently the preferences are deleted no matter what the allowOverride value is. But if it is "false" s...
- 08:10 PM bug #8385: Open issues in DB preferences
- the above both fixes seem to work (though the last is only a workaround for a real fix (full delete of the preference))
- 05:55 PM bug #8385: Open issues in DB preferences
- Patrick Plitzner wrote:
> Wouldn't it be better to just delete the preference if the config is `null`. `null` means... - 05:54 PM bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> >io.ABCD.config is stored in DB with value NULL even if nothing has changed, if this is defa... - 04:33 PM bug #8385: Open issues in DB preferences
- >io.ABCD.config is stored in DB with value NULL even if nothing has changed, if this is default value, the default sh...
- 01:45 PM bug #8385: Open issues in DB preferences
- After setting Publish Flag to default and reopening:
~~~
login : admin
editor version : 5.8.0.201907180811
serv... - 01:39 PM bug #8385: Open issues in DB preferences
- Patrick, can you have a look?
- 01:34 PM bug #8385 (Closed): Open issues in DB preferences
- * ~~Values on General page (Export/Import, Checklist perspective, Taxonnode Wizard) are not loaded correctly when reo...
- 07:54 PM feature request #8256: Show all status preferences as table
- CRITICAL:
Updating an existing list does not seem to work anymore. If I update and reopen the dialog everything is... - 07:04 PM feature request #8256 (Feedback): Show all status preferences as table
- By the way: if no area is selected the subject is /taxeditor which does not make much sense. It should be only "/". A...
- 06:53 PM feature request #8256: Show all status preferences as table
- In general this seems to work and is a great feature. Some minor issues: the table should show up below the status se...
- 07:32 PM feature request #8323: Make nom.status and rank lists a CdmPreference
- If I open a name which has a rank that is not available in the rank list, the rank is added to the list of available ...
- 07:29 PM feature request #8323: Make nom.status and rank lists a CdmPreference
- Also the prefs seem to work only after restarting TaxEditor. Maybe this is the main reason for the above mentioned is...
- 07:11 PM feature request #8323 (Feedback): Make nom.status and rank lists a CdmPreference
- Override handling does not yet work correctly for both of them. See #8045#note-9 and #8045#note-13
- 06:32 PM feature request #8058: Further issues for (local) preferences
- Maybe we should split this ticket.
- 05:45 PM feature request #8058 (Feedback): Further issues for (local) preferences
- Katja Luther wrote:
> the common name language preference is added.
Can we still move "Available Languages" below... - 06:31 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- Beside these issues the implementation works correctly as it looks like. This gives more consistency to data and UI.
- 06:30 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- Is there a reason why if used in distribution editor, the Status field and the modifying text field in details view i...
- 06:27 PM feature request #8293 (Feedback): Distribution preferences for details view should be serverside preferences
- 06:27 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- The preference menu is not correct. You put it to UI-DistributionData-VocsAndStatus
UI is only for UI! (as the nam... - 06:13 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- The fix seems to work. Katja, can you please check, why empty strings are possible here. It is a bit strange. In the ...
- 05:27 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- Andreas Müller wrote:
> This error is a blocker!!
I tried to fix with 955fadf4. Will see if it works
- 05:12 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- This error is a blocker!!
- 05:11 PM feature request #8293: Distribution preferences for details view should be serverside preferences
- When trying to edit a distribution in facts view I get an IAE:
~~~
login : admin
editor version : 5.8.0.20190718... - 06:04 PM feature request #8383 (Closed): Add CORS header
- 05:53 PM feature request #8383 (Resolved): Add CORS header
- Applied in changeset commit:utis-webapp|c16dc4758af86cb502dfc7f6687fdc4c8c5c5c4a.
- 11:12 AM feature request #8383 (Closed): Add CORS header
- 06:01 PM Revision 72dc91d6 (cdm-dataportal): ref #8388 block to search UTIS implemented - removing debug code
- 05:53 PM Revision c16dc475 (utis-webapp): fix #8383 adding CORSE headers
- 05:52 PM Revision 0aebb4bc (taxeditor): ref #8293 try to fix IAE in Distribution Details View if status pref exists
- 05:52 PM Revision 86c96664 (utis-core): better metadata on phycobank
- 05:51 PM Revision 793ded33 (taxeditor): ref #8385 Fix potential NPE
- 05:45 PM feature request #8388 (Resolved): UTIS search block
- Applied in changeset commit:cdm-dataportal|c05d1cfbddb1d4e5942efc85201405814a0f9a22.
- 05:44 PM feature request #8388 (Closed): UTIS search block
- implement a Drupal block which allows using the UTIS service
- 05:45 PM Revision c05d1cfb (cdm-dataportal): fix #8388 block to search UTIS implemented
- 05:41 PM Revision 2393d9c5 (cdm-dataportal): upgrading to fontawesome 5.9.0
- 05:37 PM Revision cf115b19 (taxeditor): ref #8385 Remove publish flag preference when set to default
- 05:37 PM Revision 34ec6317 (taxeditor): ref #8192 Expand media section by default
- 05:25 PM Revision 955fadf4 (taxeditor): ref #8293 try to fix IAE in Distribution Details View if status pref exists
- 04:20 PM bug #8375: ReferenceEllypsisFormatter produces too long strings in specific cases
- Problem: long book titles, especially if the reference is part of book.
Example longest in book - reference
![]... - 04:19 PM feature request #7932: Implement subject resolver for CdmPreferences
- Andreas K., do you already use the subject resolver in the preference cache you use for vaadin?
- 04:18 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- To me this ticket seems to be fixed and open issues are moved to new tickets. In general the structure for handling d...
- 03:54 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> On local prefs Name Details View page the "Restore Defaults" button seems to be enabled even... - 03:52 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
- Andreas Müller wrote:
> With empty preferences when only the DistrEditor page is opened without any change afterward... - 03:05 PM bug #8386 (Closed): Disable admin menu when not logged into a DB
- currently it is shown after (re)start which does not make sense as admin functionality is always related to DB login.
- 01:14 PM feature request #8384 (New): Consider to use icon links for all reference citations
- Candidates:
* Bibliography - 01:13 PM feature request #8320 (Closed): Links to reference page as appendend icon instead of having the whole citation as link
- Andreas Müller wrote:
> Do we have any rules where these icons are used? E.g. in the bibliography they do not seem t... - 12:39 PM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- Do we have any rules where these icons are used? E.g. in the bibliography they do not seem to be used yet though it m...
- 12:37 PM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- Andreas Kohlbecker wrote:
> And this one
>
> http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_datapor... - 08:13 AM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- And this one
http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/a67fc2ab-1452-4c32-84b6... - 08:05 AM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
- http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/c246856f-c03e-4cb7-ac92-d9b2864084cd
... - 12:51 PM feature request #8294 (Closed): Make display of ID in source and ID Namespace configurable
- translated preferences. Closing the ticket.
- 12:12 PM feature request #8294 (Feedback): Make display of ID in source and ID Namespace configurable
- All the rest seems to work and looks ok.
- 12:08 PM feature request #8294: Make display of ID in source and ID Namespace configurable
- same in local preference (if this is different code)
- 12:06 PM feature request #8294: Make display of ID in source and ID Namespace configurable
- Server side preferences are not yet translated (Submenu Sources and Labels on page) (update code before changing as ...
- 12:49 PM Revision ddaac84e (taxeditor): ref #8294 i18n for plugin.xml
- 12:38 PM Revision 7ec03c92 (taxeditor): ref #8294 i18n
- 12:05 PM Revision 22f28ff0 (taxeditor): change label for ID Namespace
- 11:31 AM bug #8260 (Closed): Details and Supplemental Data View do not save the expansion state of sections
- 10:41 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
- Fix 20b35d99 seems to solve the problem. I think we can close the ticket.
- 10:55 AM bug #8129: Load images asynchronously in media details view
- Andreas Müller wrote:
>...
> * the size of the image is recomputed, most often the size can be computed from metada... - 10:52 AM bug #8129: Load images asynchronously in media details view
- Andreas Müller wrote:
> Also when switing between 2 entries in bulk editor with <2sec between switches often the ent... - 10:46 AM bug #8129: Load images asynchronously in media details view
- The expand problem seems to be solved (see #8260). Final question: what is the default. I suggest to have "expanded" ...
- 12:51 AM bug #8129: Load images asynchronously in media details view
- Please test intensively e.g. with the 2 given media if the behavior is as you would expect for rapid data entry and c...
- 12:50 AM bug #8129: Load images asynchronously in media details view
- The loading does not stop immediately when a new URL is entered but should. Otherwise an image is shown which does no...
- 12:48 AM bug #8129: Load images asynchronously in media details view
- Andreas Müller wrote:
> Also when switing between 2 entries in bulk editor with <2sec between switches often the ent... - 12:44 AM bug #8129: Load images asynchronously in media details view
- Also when switing between 2 entries in bulk editor with <2sec between switches often the entries are not selected any...
- 12:42 AM bug #8129: Load images asynchronously in media details view
- Hmm, sometimes it works but most often it does not. Looks like you have at least to open a new bulk editor to make it...
- 12:07 AM bug #8129: Load images asynchronously in media details view
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Now, the media details view is always collpased and the state i... - 10:42 AM bug #8374: Save genus generated for a species with a different reference
- Problem with bibliographic reference Part of Book.
hint: Book titel co... - 10:34 AM bug #6523: Correct display of misspellings in synonymy
- Als unbeteiligter Leser halte ich die Ausgabe für sachlich falsch oder zumindes für unverständlich. Erst mit externer...
- 10:04 AM Revision 3b069ad4 (taxeditor): ref #8129 Handel widget disposed exceptions
- 10:00 AM Revision 20b35d99 (taxeditor): ref #8260 Fix string comparison
- 08:16 AM bug #8287 (Closed): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
- 08:13 AM feature request #8304: Name page redirects to according taxon depending on query parameter
- This is a misunderstanding. During the standup yesterday I was talking about a global switch which overrides the defa...
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