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From 07/19/2018 to 08/17/2018

08/17/2018

10:01 PM bug #7578: preseve null values in all mesurements during serialization of webservice responses
Andreas Müller wrote:
> error radius still returns 0 in http://test.e-taxonomy.eu/cdmserver/cichorieae/occurrence/8e...
Andreas Kohlbecker
03:14 PM bug #7578: preseve null values in all mesurements during serialization of webservice responses
error radius still returns 0 in http://test.e-taxonomy.eu/cdmserver/cichorieae/occurrence/8eaf2ade-d478-4af6-b3df-bad... Andreas Müller
02:09 PM bug #7578 (Closed): preseve null values in all mesurements during serialization of webservice res...
works now! Andreas Kohlbecker
12:50 PM bug #7578 (In Progress): preseve null values in all mesurements during serialization of webservic...
this seems to be not working as expected:
http://test.e-taxonomy.eu/cdmserver/cichorieae/occurrence/8eaf2ade-d478-...
Andreas Kohlbecker
09:36 PM bug #7179: Phycobank: set protectedTitleCaches = 1 where Person contains no data
correct! Andreas Kohlbecker
04:24 PM bug #7179: Phycobank: set protectedTitleCaches = 1 where Person contains no data
I guess this is only data related and therefore target version can be removed. Correct? Andreas Müller
05:19 PM Revision 54ada1c3 (cdm-vaadin): ref #7664 adapt return type for many methods with defined typific...
Andreas Müller
04:57 PM Revision 62cc2893 (taxeditor): cleanup
Andreas Müller
04:41 PM feature request #7071: Reenable restore functionality
?? Andreas Müller
04:23 PM feature request #7281: Implement bromelian import
I guess this is only data related and therefore target version can be removed? Otherwise please add commit and revert... Andreas Müller
04:14 PM Revision 2c34bd93 (taxeditor): Merge branch 'release/5.2.0' into develop
jenkins
04:14 PM Revision 11b59612 (taxeditor): Merge branch 'release/5.2.0'
jenkins
04:09 PM feature request #6682 (Resolved): Formatter and DTO for taxon relationships (e.g. misapplied names)
Andreas Müller
04:08 PM Revision 83415cdc (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
04:08 PM Revision 69c43289 (cdm-server): Merge branch 'release/5.2.0' into develop
jenkins
04:07 PM Revision a230cdfe (cdm-server): updating poms for branch'release/5.2.0' with non-snapshot versions
jenkins
04:06 PM Revision c546187c (cdm-webapp): Merge branch 'release/5.2.0' into develop
jenkins
04:06 PM Revision 4201e860 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
04:06 PM task #6986 (Rejected): 4 animalia lists available for RL
Rejected as lists are not needed anymore. Andreas Müller
04:06 PM Revision 2c37dba5 (cdm-webapp): updating poms for branch'release/5.2.0' with non-snapshot versions
jenkins
04:06 PM Revision b3e90dcb (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.2.0
jenkins
04:06 PM Revision bd2c0c62 (cdm-dataportal): Merge branch 'release/5.2.0' into develop
jenkins
04:06 PM Revision c8deffb3 (cdm-dataportal): updating poms for branch'release/5.2.0' with non-snapshot ver...
jenkins
04:05 PM Revision b05cbcac (cdm-dataportal): release-preparation: production level css
jenkins
04:05 PM Revision 31c10aae (cdm-vaadin): Merge branch 'release/5.2.0' into develop
jenkins
04:05 PM Revision 61fd59ad (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
04:02 PM Revision 9b6635b8 (cdm-vaadin): updating poms for branch'release/5.2.0' with non-snapshot versions
jenkins
04:02 PM Revision c2e6c883 (cdm-vaadin): jenkins bumping cdmlib.version to 5.2.0
jenkins
03:51 PM task #7596 (Resolved): PhycoBank Portal - Formatting
Andreas Kohlbecker
03:33 PM task #7527 (Closed): CdmEntityDaoBase.*ByParam() public and also available in the service layer
Generally this looks ok. Only the return types should be specified explicitly. I created a new ticket as this is a ge... Andreas Müller
03:31 PM Revision 98ce4a92 (cdmlib): ref #7664 adapt return type for many methods with defined typification
Andreas Müller
03:23 PM Revision b826b86c (cdmlib): Updating develop poms back to pre merge state
jenkins
03:23 PM Revision 1c5a8870 (cdmlib): Merge branch 'master' into develop
jenkins
03:23 PM Revision 4d987e05 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:23 PM Revision 2a5e027c (cdmlib): Merge branch 'release/5.2.0'
jenkins
03:23 PM feature request #7664 (New): Use typified return types where possible
1. Many method of service layer and persistence use T as return type even if a more specific class is defined by para... Andreas Müller
03:07 PM Revision 3da6827b (cdmlib): updating poms for branch'release/5.2.0' with non-snapshot versions
jenkins
02:57 PM Revision 18b3dd0d (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.2.0-SN...
jenkins
02:57 PM Revision 4c3d9f75 (cdm-webapp): updating poms for 5.3.0-SNAPSHOT development
jenkins
02:57 PM Revision f4dcd669 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.3.0-SN...
jenkins
02:55 PM Revision f9062d6c (cdm-vaadin): jenkins bumping cdmlib.version to 5.2.0-SNAPSHOT
jenkins
02:55 PM Revision 1fd3f2b5 (cdm-vaadin): updating poms for 5.3.0-SNAPSHOT development
jenkins
02:55 PM Revision 771e5e60 (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0-SNAPSHOT
jenkins
02:54 PM Revision 2ff641d8 (cdm-vaadin): avoiding symlinks to circumvent bug in jgitflow
Andreas Kohlbecker
02:41 PM Revision 22e26d8a (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0-SNAPSHOT
jenkins
02:40 PM Revision 6a6f6267 (cdm-vaadin): ignoring env.properties
Andreas Kohlbecker
02:35 PM Revision 4d01989b (taxeditor): ref #7362 Show info when searching with <4 letters
Patrick Plitzner
02:20 PM Revision 4f2039f3 (taxeditor): Updated version in pom / project files to taxeditor version : 5.3....
jenkins
02:20 PM Revision 272802a9 (taxeditor): Updated version in pom / project files to taxeditor version : 5.2....
jenkins
02:20 PM Revision 8a69db44 (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0-SNAPSHOT
jenkins
02:20 PM Revision b1f1bc44 (cdm-server): updating poms for 5.3.0-SNAPSHOT development
jenkins
02:20 PM Revision 735ffe43 (cdm-dataportal): updating poms for 5.3.0-SNAPSHOT development
jenkins
02:17 PM Revision 07f30a67 (cdmlib): updating poms for 5.3.0-SNAPSHOT development
jenkins
01:26 PM Revision 200979f6 (cdmlib): ref #7578 adding missing json config entry for the generic api
Andreas Kohlbecker
01:03 PM bug #7663 (New): drupal installations report Undefined index: distribution_name in drupal_install...
This is a known drupal issue https://www.drupal.org/project/drupal/issues/1971068
See also:
https://api.drup...
Andreas Kohlbecker
12:30 PM bug #7361 (Closed): Consistent UI concept for create, new, add, remove, delete, edit buttons
remaining improvements copied to #7662 Andreas Kohlbecker
12:28 PM feature request #7662 (New): Better icons for create, new, add row, remove row

Alternative icons for create, new, add row, remove row:
* use add row and remove icons like: ![](picture79-1.png...
Andreas Kohlbecker
12:21 PM Revision e8423490 (taxeditor): ref #7362 Show synonyms for term details
Patrick Plitzner
12:20 PM bug #7583 (Closed): NPE on logout in registration list view
it's fixed Andreas Kohlbecker
12:17 PM feature request #7590 (Closed): findByTitleWithRestrictions allows combining Restrictions by OR
this feature obviously works as expected on the test-server since it is being used in cdm-vaadin and it is covered by... Andreas Kohlbecker
12:16 PM task #7550 (Closed): Move UserHelper from cdm-vaadin into cdmlib
no further problems Andreas Kohlbecker
12:15 PM bug #7525 (Closed): IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm...
all criteria methods restored commit:024d9b21 and no further problems did popup during the past two months, so we can... Andreas Kohlbecker
12:12 PM bug #7586 (Closed): com.vaadin.data.Property$ReadOnlyException on opening TypeSpecimenWorkingsetE...
did not occur again on the test-server since over 20days, so this is for sure solved Andreas Kohlbecker
12:11 PM feature request #7571 (Closed): Collection editor has field to select and edit the institution
Andreas Kohlbecker
12:10 PM task #7562 (Closed): Specimen table "Associated with" taxon is irritating and needs to be removed...
Checked and ok Andreas Kohlbecker
09:40 AM task #7562: Specimen table "Associated with" taxon is irritating and needs to be removed, replaced
For reviewing check http://test.e-taxonomy.eu/dataportal/preview/campanulaceae/cdm_dataportal/taxon/cdcacbda-11c0-4c... Andreas Kohlbecker
09:40 AM task #7562: Specimen table "Associated with" taxon is irritating and needs to be removed, replaced
Hallo Norbert,
die Specimenseiten sind von dieser Änderung nicht betroffen: http://test.e-taxonomy.eu/dataportal/p...
Andreas Kohlbecker
08:48 AM task #7562: Specimen table "Associated with" taxon is irritating and needs to be removed, replaced
Hallo Andreas,

ich komm erst heute dazu, zu antworten.

Ich kann mich ehrlich gesagt nicht mehr daran erinnern...
Andreas Kohlbecker
12:06 PM Revision a77d81cc (cdmlib): removing unused duplicate property PreservedSpecimenDTOs
Andreas Kohlbecker
11:53 AM Revision d68a30b0 (cdm-dataportal): using FielUnitDTO->derivates instead of ->preservedSpecimenDT...
Andreas Kohlbecker
11:51 AM Revision c902cfd4 (cdm-dataportal): merge develop into feature branch
Katja Luther
11:38 AM Revision fe56d402 (cdmlib): fieldUnitDTO code cleaning
Katja Luther
11:33 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Generally I wonder how to continue here. As mentioned I still get HTTPNoResponse issues on "test" when running large ... Andreas Müller
11:25 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Patrick Plitzner wrote:
> Comment #6321#note-43: This is fixed
OK, this looks quite good. I think we can only i...
Andreas Müller
11:18 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Patrick Plitzner wrote:
> Comment #6321#note-40: I just added a delay of 500ms to wait for the previous job to finis...
Andreas Müller
11:15 AM feature request #6321 (Feedback): Implement parallel loading + progress bar for loading objects i...
I still get exceptions related to NoHttpResponseException on test server. E.g. when running a first request for "*" o... Andreas Müller
11:14 AM Revision 416bc78f (cdm-dataportal): use mediaDTO
Katja Luther
11:08 AM feature request #7661 (New): Improve saving strategy for bulk editor
Currently all records are reloaded. This creates problems especially with large lists.
We need a save strategy whi...
Andreas Müller
11:00 AM feature request #7643: cdmlight export: for bibliographic short citation use the freetext of the ...
yes this is fixed. Katja Luther
10:53 AM feature request #7643: cdmlight export: for bibliographic short citation use the freetext of the ...
Andreas Müller wrote:
> This will throw an NPE if datePublished does not exist!!
Is this fixed??
Andreas Müller
10:53 AM Revision f5ac2db4 (cdmlib): removing merge conflict artifact from eclipse launcher
Andreas Kohlbecker
10:52 AM feature request #7518 (Closed): remaining issues for usage of NatTable for bulkeditor
All issues are either fixed or moved to new ticket so we can close this one. Andreas Müller
10:51 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
> **better symbols for target/candidates of deduplication**: this could either be solved b...
Andreas Müller
10:39 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
>
> **However, the percentage does not yet depend on real content length**: I tried auto a...
Andreas Müller
10:21 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
> **possibility to copy from a cell content**: On linux the context menu does not exist at a...
Andreas Müller
10:19 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
> **colors look like in the 90th**: I used a little less neon colors but this is very subj...
Andreas Müller
10:10 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
> **once we have >3 columns we will need horizontal scrolling anyway**: horizontal scrolli...
Andreas Müller
10:06 AM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner wrote:
> **size of the rows should not be 50/50, but depending on the content length (percentage ...
Andreas Müller
10:50 AM Revision fdd2fa78 (cdmlib): cleaning merge problem info in comment
Andreas Kohlbecker
10:46 AM feature request #7660 (Closed): Indicate the row state in a NAT table via symbols
This is needed for e.g. indicating that a row is a candidate for deduplication. For further discussion see #7518.
...
Andreas Müller
10:44 AM Revision a7e45124 (cdmlib): code cleaning
Katja Luther
10:43 AM Revision 806bd3b0 (taxeditor): ref #7362 Use pre-selected vocabulary when dragging terms
Patrick Plitzner
10:37 AM feature request #7659 (New): Implement algorithm to optimize initial column size in NAT tables
If a NAT table has multiple columns the correct initial column size becomes important to avoid too much empty space a... Andreas Müller
10:34 AM Revision 6b91c396 (cdmlib): fix getPreservedSpecimen in fieldUnitDTO
Katja Luther
10:26 AM Revision aeb34234 (taxeditor): ref #7362 Add term vocabular combo
Patrick Plitzner
10:00 AM bug #7559 (Closed): possibly corrupted hiberante session after previous error on saving editor
Done with commit:cdm-vaadin|51886e05
Closing ticket.
Andreas Kohlbecker
09:51 AM bug #7559: possibly corrupted hiberante session after previous error on saving editor
These problems did not occur since 30 days despite intensive usage of the test system, therefore we can be pretty sur... Andreas Kohlbecker
09:58 AM Revision 51886e05 (cdm-vaadin): ref #7559 removing commented code which also includes old convers...
Andreas Kohlbecker
09:44 AM bug #6563 (Closed): Display altitude, distance to Ground and watersurface correct handling of fr...
Works for the examples given in this issue. Andreas Kohlbecker
09:27 AM bug #7531 (Closed): PermissionDeniedException on flushing registration with modified status even ...
Very beautiful code ;-), I think we can close this ticket. Andreas Müller
07:31 AM Revision 34d7fab8 (cdmlib): Add source of type aggregation to description
Patrick Plitzner
07:31 AM Revision e93e2265 (cdmlib): Fix LazyInitializationException
Patrick Plitzner

08/16/2018

07:09 PM Revision a9c1e5d6 (cdmlib): ref #6682 types for both directions
Andreas Müller
06:47 PM Revision ef5174f6 (cdmlib): ref #6682 try to fix failing query in TaxonDao
Andreas Müller
06:15 PM Revision 5576f79c (cdmlib): ref #6682 try to fix failing query in TaxonDao
Andreas Müller
06:09 PM Revision 1e1d5695 (cdmlib): ref #6682 revert relType DTO
Andreas Müller
06:03 PM Revision 1fc33b39 (cdmlib): ref #6682 add types and deduplicateMisapplications parameter to web s...
Andreas Müller
05:53 PM Revision a089c5d4 (cdmlib): ref #6682 add types and deduplicateMisapplications parameter to web s...
Andreas Müller
05:12 PM Revision 78614c1a (cdmlib): ref #6682 add typeUuid and try to fix missing type issue
Andreas Müller
04:33 PM bug #7638 (Feedback): problem with media data missing meta data
Size is empty now, but heigth and width is still 0. Is this wanted or did you forget to handle them similarly? Andreas Müller
04:29 PM bug #7647: accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in details view
A first check looks fine, but I would like to check again with Walters example after release before finally closing t... Andreas Müller
04:15 PM Revision 4e6e568a (cdmlib): ref #6682 fix misapplication deduplication issues
Andreas Müller
03:43 PM Revision 2fa5cd44 (taxeditor): Allow only exact values xOR aggregated values in cell editor
Patrick Plitzner
03:42 PM Revision 5e627e56 (taxeditor): Fix setting of feature type
Patrick Plitzner
03:21 PM Revision 1038e9fe (taxeditor): Fix NPE
Patrick Plitzner
03:16 PM Revision 576743e2 (cdmlib): ref #6682 include doubtful
Andreas Müller
02:35 PM feature request #7658 (Closed): use new taxon relationship DTO webservice in portal
for details see #6682
Example taxa:
* Chichorieae: Pilosella acutifolia coll.
* Cihochorieae: Hieracium dermop...
Andreas Kohlbecker
02:33 PM bug #7243 (Duplicate): sometimes the context menu in name editor does not work anymore
Patrick Plitzner
01:55 PM Revision 8b98d482 (cdmlib): ref #6682 use TaggedTextBuilder
Andreas Müller
12:59 PM Revision 8a17aa3e (cdmlib): ref #6682 further fixes for taxon relationship formatting - remove se...
Andreas Müller
12:53 PM Revision 3c998621 (taxeditor): Make specimen selection dialog horizontally scrollable
Patrick Plitzner
12:17 PM Revision d6c56cdc (cdmlib): ref #6682 further fixes for taxon relationship formatting - fix refer...
Andreas Müller
12:10 PM Revision fcbac3e6 (taxeditor): Show possible exception in dialog
Patrick Plitzner
12:07 PM feature request #7657 (Rejected): Use HQL query for loading character matrix
Patrick Plitzner
11:43 AM Revision a81acd75 (cdmlib): revert commit ff21181c
Katja Luther
11:39 AM Revision 6f78f667 (cdmlib): deproxy of entities in TaggedTextBuilder
Andreas Kohlbecker
10:14 AM bug #7641: Reference editor: Error when incerting several new authors into a new author team
![](picture645-1.png)

![](picture58-1.png)
![](picture395-1.png)
Wolf-Henning Kusber
08:52 AM Revision b3fb4578 (taxeditor): adapt editor to change getFieldUnitForGatheringEvent to findFieldU...
Katja Luther
08:48 AM Revision 90ec321a (cdmlib): ref #6682 further fixes for taxon relationship formatting - relsec an...
Andreas Müller
08:18 AM Revision 81502ddd (cdmlib): ref #6682 further fixes for taxon relationship service - better separ...
Andreas Müller

08/15/2018

12:49 AM Revision 82eb3374 (cdmlib): ref #6682 further fixes for taxon relationship service
Andreas Müller
12:05 AM Revision d7909683 (cdmlib): ref #6682 further fixes for taxon relationship service
Andreas Müller
10:14 PM Revision 977a388a (cdmlib): ref #6682 fix directions for taxonRelationship service
Andreas Müller
10:07 PM Revision 973082b3 (cdmlib): ref #6682 further fixes for taxonRelationship service
Andreas Müller
09:13 PM Revision 1fab5922 (cdmlib): ref #6682 some changes to test taxon relationship service
Andreas Müller
08:16 PM Revision c6a7335e (cdmlib): ref #6682 adapt inverse MAN symbol in test
Andreas Müller
08:12 PM bug #7656 (Duplicate): Adapt inverse symbol for MisappliedName relationship type
this is required for #6682
still need update script here
Andreas Müller
08:10 PM Revision d50a2175 (cdmlib): ref #6682 adapt taxon rel type symbols in test in for MAN inverse type
Andreas Müller
07:30 PM Revision 33852ad0 (cdmlib): ref #6682 first implementation of taxon relationship formatter and we...
Andreas Müller
05:49 PM Revision a186543e (taxeditor): ref #7518 Pre-load and select previously selected element
Patrick Plitzner
05:47 PM Revision ed983c96 (cdmlib): ref #7492 handled unpublished in NameCatalogueController.doGetTaxonIn...
Andreas Müller
05:06 PM Revision 6959d272 (taxeditor): Fix possible NPE
Patrick Plitzner
04:56 PM Revision 938551ac (cdmlib): cleanup
Andreas Müller
04:56 PM Revision 6d921b88 (cdmlib): fix non compiling code in CommonServiceImpl (works on other installat...
Andreas Müller
04:56 PM Revision 93cd99ee (cdmlib): fix row count issue for CsvImportBase
Andreas Müller
04:56 PM Revision 3994e588 (cdmlib): cleanup
Andreas Müller
03:38 PM feature request #7518 (Resolved): remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner
03:31 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor
~~**possibility to copy from a cell content**: On linux the context menu does not exist at all but CTRL+C works. I th... Patrick Plitzner
03:37 PM Revision 596ef595 (taxeditor): ref #7518 Fix colums sizes -> show horizontal scrollbars
Patrick Plitzner
03:20 PM Revision e229bf65 (taxeditor): adapt taxeditor to changes in DerivedUnitFacade
Katja Luther
03:20 PM Revision a160d195 (taxeditor): do not allow to add NameDescriptions in bulkeditor
Katja Luther
03:18 PM Revision ec35f482 (taxeditor): ref #7518 Soften colors for deduplication
Patrick Plitzner
03:02 PM Revision 16a514f4 (taxeditor): ref #7518 Reduce size of index column
Patrick Plitzner
02:40 PM Revision 737c3638 (cdmlib): adapt occurrence search to changes in derivedUnitFacade
Katja Luther
02:37 PM Revision 5a65460f (cdmlib): adapt cdm light test
Katja Luther
02:22 PM Revision c17ca5af (cdmlib): fix NPE in cdm light export
Katja Luther
02:04 PM Revision 745fac28 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
01:51 PM Revision 544dc46c (taxeditor): Fix exception label for URI text elements
Patrick Plitzner
01:44 PM Revision 55f7ad0e (cdmlib): minor
Katja Luther
01:38 PM Revision e2ba0554 (cdmlib): minor
Katja Luther
01:18 PM Revision 2201d866 (cdmlib): adapt abcd import to changes in derivedUnitFacade
Katja Luther
01:17 PM Revision 7d2bfaed (cdmlib): fix test for getKindOfUnit
Katja Luther
01:00 PM Revision 4047c748 (cdmlib): adapt test for cdm light to last changes
Katja Luther
12:52 PM Revision c6716d5c (cdmlib): Merge branch 'feature/specimenPortal' into develop
Katja Luther
12:52 PM Revision 10b00df8 (cdmlib): derivedUnitFacade should not give back the kindOfUnit for the fieldUn...
Katja Luther
12:51 PM Revision 6492ba96 (cdmlib): adapt sec ref title with datePublished freeText
Katja Luther
12:23 PM feature request #6321 (Resolved): Implement parallel loading + progress bar for loading objects i...
Patrick Plitzner
09:54 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Comment #6321#note-40: I just added a delay of 500ms to wait for the previous job to finish. Waiting explicitily is v... Patrick Plitzner
12:16 PM bug #7641: Reference editor: Error when incerting several new authors into a new author team
All new authors, except the last one are not saved = they can not be selected. Wolf-Henning Kusber
12:06 PM bug #7641: Reference editor: Error when incerting several new authors into a new author team
http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/1c70fa46-c7a5-43e7-922a-379b200... Wolf-Henning Kusber
11:44 AM bug #7641: Reference editor: Error when incerting several new authors into a new author team
2018-08-15
Documentation http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/8be1a...
Wolf-Henning Kusber
11:33 AM Revision 4315c73d (cdmlib): adapt authorship string ion cdmlight
Katja Luther
11:10 AM Revision cef17ca3 (cdmlib): Increase version number of site skin project
Patrick Plitzner
10:05 AM Revision c31ff29d (cdmlib): kindOfUnit for all derivates not only for field units
Katja Luther
10:03 AM Revision 23daf51d (taxeditor): Fix releases link
Patrick Plitzner
10:02 AM Revision e288ba50 (cdmlib): Fix releases link
Patrick Plitzner
09:13 AM feature request #7653: [DISCUSS] Delete NameFacts => Result: no
WGB:
richtig wichtig erscheint mir vor allem die Sache mit den Typen. Aber für alle Fälle gilt, dass man das vorlä...
Andreas Müller

08/14/2018

09:22 PM Revision 88ef5f8b (taxeditor): ref #6321 Wait for previous search to finish
Patrick Plitzner
09:22 PM Revision a433aeeb (taxeditor): Allow either categorical xor quantitative data for characters
Patrick Plitzner
09:22 PM Revision 66e51de3 (taxeditor): ref #6321 Load asynchronously loaded entities into main session
Patrick Plitzner
09:22 PM Revision 970a5512 (taxeditor): Change label of feature tree widget for descriptive date set editor
Patrick Plitzner
06:54 PM feature request #7655 (Duplicate): References Editor: book section offers title field
References Editor: A book section does not provide a title field, yet.
External users might miss this.
Workaround...
Wolf-Henning Kusber
06:51 PM feature request #7654 (Duplicate): New registration page existing publications combobox does 'beg...
The search on bibliographic authors is a full text search.
Example "Lange-Bert" (see screen shot) is searching for t...
Wolf-Henning Kusber
04:41 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Also after import of new higher classifications we need to attache subgeneric taxa to their according taxa in bulk.
...
Andreas Müller
04:38 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Andreas Kohlbecker wrote:
> When creating a species a new Taxon needs to be created for this species and the new tax...
Andreas Müller
04:26 PM feature request #7653: [DISCUSS] Delete NameFacts => Result: no
WGB:
ich sehe da eine Reihe von Anwendungen für Namens-bezogene Fakten:
* ~~Etymologie – ist ganz allgemein wie...
Andreas Müller
10:25 AM feature request #7653: [DISCUSS] Delete NameFacts => Result: no
AM:
upps, das ist mir vollständig neu, dass für Namen über den Bulkeditor auch (Name-)facts editiert werden können...
Andreas Müller
10:23 AM feature request #7653 (Closed): [DISCUSS] Delete NameFacts => Result: no
NameFacts are currently very rarely used except for protologues. Protologues will be handled with nomenclatural sourc... Andreas Müller
04:00 PM Revision 012d4a65 (taxeditor): Revert "ref #6321 Wait for canceled search to finish before starti...
This reverts commit 36ee2736a960471161a354379845f770027286c4. Patrick Plitzner
03:07 PM Revision 203a0b07 (cdm-server): Update CI link
Patrick Plitzner
03:04 PM Revision 696940b9 (taxeditor): Fix broken releases link
Patrick Plitzner
03:02 PM Revision b1f5279e (taxeditor): Update developers information
Patrick Plitzner
02:56 PM Revision f8b62135 (cdmlib): Remove broken link
Patrick Plitzner
10:21 AM Revision 135547e5 (cdmlib): Merge branch 'develop' into feature/specimenPortal
Katja Luther
10:21 AM Revision 545f8115 (cdmlib): smaller changes on specimenDTOs
Katja Luther
10:17 AM Revision 276f39f6 (cdm-dataportal): add the treeview as third variant for the specimen page
Katja Luther
09:49 AM feature request #7281 (Closed): Implement bromelian import
Katja Luther
09:46 AM bug #7638 (Resolved): problem with media data missing meta data
Katja Luther
09:42 AM bug #7614 (Closed): IndexOutOfBoundsException after deleting in bulkeditor
works fine now and the code seems to be correct. Katja Luther
09:12 AM feature request #7652 (New): add possibility to delete only the taxon node and keep the taxon in ...
Katja Luther

08/13/2018

12:52 AM Revision 8648170e (cdmlib): ref #7651 #7622 using nameService instead of CdmRepository to avoid b...
Andreas Kohlbecker
11:38 PM Revision 0faf24b5 (cdmlib): ref #7651 #7622 relaxing requirement for an available registration mi...
Andreas Kohlbecker
11:02 PM task #7651 (New): RegistrationManager implemented
The commit:6ed17427 which was made for #7622 contains business logic which was placed in the RegistrationService for ... Andreas Kohlbecker
10:57 PM task #7650 (New): RegistrationFactory implemented
The commit:6ed17427 which was made for #7622 contains factory methods (at least one) which were placed in the Registr... Andreas Kohlbecker
10:53 PM Revision 148bdb5b (cdmlib): ref #7622 addTypeDesignation() to receive registration uuids instead ...
Andreas Kohlbecker
10:51 PM Revision 6f1b1416 (cdm-vaadin): ref #7622 simplyfying code be replacing targetRegistration for ty...
Andreas Kohlbecker
07:32 PM Revision dd3f7f9d (cdm-vaadin): ref #7622 persisting new registrations only when typeDesignations...
Andreas Kohlbecker
07:30 PM Revision 6ed17427 (cdmlib): ref #7622 preliminarily moving all registration management methods fo...
Andreas Kohlbecker
07:21 PM bug #7622: RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leave...
Updating the subject to better reflect the cause Andreas Kohlbecker
05:21 PM feature request #6682: Formatter and DTO for taxon relationships (e.g. misapplied names)
This should rather be a formatter for concept relations and a new DTO service in remote. Andreas Müller
04:34 PM bug #7649 (Closed): Term editor loads/saves extremely slow
Walter:
"Der Term Editor braucht extrem lange, um aufzugehen – macht nichts, aber könnte ja sein, dass da etwas n...
Patrick Plitzner
04:31 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > when testing a couple of times I got an EagerLoadingException c...
Andreas Müller
04:20 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Andreas Müller wrote:
> when testing a couple of times I got an EagerLoadingException caused by an NoHttpResponseExc...
Patrick Plitzner
03:26 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Andreas Müller wrote:
> When running a search and stopping it by running a new search the results of the first searc...
Patrick Plitzner
04:30 PM bug #7614 (Resolved): IndexOutOfBoundsException after deleting in bulkeditor
Patrick Plitzner
04:29 PM bug #7614: IndexOutOfBoundsException after deleting in bulkeditor
There are cases when -1 is returned as the current row index. This is now caught before getting the element at the in... Patrick Plitzner
04:05 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
Also an issue for Nepenthes ampullaria
http://caryophyllales.org/nepenthaceae/cdm_api/proxy/http%253A%252F%252Fap...
Andreas Müller
01:33 PM bug #7555 (Resolved): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lap...
please review Andreas Kohlbecker
01:32 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
fixed in commit:0d70754 Andreas Kohlbecker
01:29 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
also reported by walter
http://caryophyllales.org/nepenthaceae/cdm_api/proxy/http%253A%252F%252Fapi.cybertaxono...
Andreas Kohlbecker
03:26 PM Revision 36ee2736 (taxeditor): ref #6321 Wait for canceled search to finish before starting new s...
Patrick Plitzner
03:20 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names...
When creating a species a new Taxon needs to be created for this species and the new taxon needs to be related to the... Andreas Kohlbecker
03:00 PM Revision a8d014b2 (cdm-server): Fix link to installation site
Patrick Plitzner
02:28 PM feature request #7506 (Duplicate): Allow direct editing bulk editor
Patrick Plitzner
02:27 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor
Andreas Müller wrote:
> The following comment was missing when the ticket was copied from #7439: "Additionally offer...
Patrick Plitzner
01:17 PM feature request #4383: references in bibliography need de-duplication
Same or similar problem reported by Walter:
bei http://caryophyllales.org/nepenthaceae/cdm_dataportal/taxon/463255...
Andreas Kohlbecker
01:09 PM task #3249 (Duplicate): [DISCUSS] Free text search for specimen details
this seems like a duplicate of #3223
The requirement details given in this issue are very campanula secific and co...
Andreas Kohlbecker
01:04 PM bug #7645 (Closed): specimen admin preferences are not saved
works now Andreas Müller
09:53 AM bug #7645: specimen admin preferences are not saved
Applied in changeset commit:taxeditor|3935afdf45ef9ddc44850fab61cf53ba79125643. Katja Luther
09:45 AM bug #7645 (Resolved): specimen admin preferences are not saved
Andreas Müller
09:13 AM bug #7645 (Closed): specimen admin preferences are not saved
The specimen admin preferences are not in the database after clicking apply or OK. Katja Luther
01:03 PM bug #7647 (Resolved): accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in...
Katja Luther
01:02 PM bug #7647 (Closed): accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in d...
Katja Luther
12:47 PM bug #6289: “Back to images” link as “Back to taxon page” when in table-less mode
Fixing this should be easy and quickly. Andreas Kohlbecker
12:41 PM Revision 7c4fcd5c (taxeditor): fix missing label for feature in description element details view
Katja Luther
12:31 PM Revision a316f71d (taxeditor): accepted taxon which is also used as MAN should be displayed corre...
Katja Luther
11:58 AM feature request #6677: Add "hort." flag to Botanical names
AM:
ok, das heißt, hort. könnte eigentlich an allen 4 Stellen stehen (Kombinations- und Ex-Author, sowie auch als ...
Andreas Müller
11:51 AM feature request #6677: Add "hort." flag to Botanical names
WGB:
im Stearn (4ed, 355) wird die Abkürzung „hort.“ als „hortorum, of gardens; hortulanorum, of gardeners“ defini...
Andreas Müller
10:43 AM feature request #6677: Add "hort." flag to Botanical names
AM:
Hallo Walter,
ich glaube im Zuge des Nepenthes Imports bin ich irgendwann mal auf die Abkürzung „hort.“ ges...
Andreas Müller
10:38 AM feature request #7646 (New): Implement parser and formatter for "hort."
as soon as #6677 is implemented Andreas Müller
09:51 AM feature request #7419 (Closed): Provide example NormalImplicit import file for phycobank higher t...
I think we can close this ticket. Andreas Müller
09:30 AM feature request #7419: Provide example NormalImplicit import file for phycobank higher taxon grap...
Why did you pass this issue to me? From reading the comments I got the impression that this issue is completed. I thi... Andreas Kohlbecker
09:18 AM Revision 240ff660 (taxeditor): fix #7645: get the correct values from db for specimen admin prefe...
Katja Luther
09:17 AM Revision 3935afdf (taxeditor): fix #7645: get the correct values from db for specimen admin prefe...
Katja Luther

08/10/2018

09:41 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Also got an NPE when deleting (and saving the delete) of a Reference. Maybe this is also related to parallel loading?... Andreas Müller
09:21 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Reloading after save and setting selection after save if selection is one of the later records in a huge dataset is s... Andreas Müller
09:17 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
In name bulk editor changing e.g. specific epithet does NOT change the labels for "Name" and "Scientific name" and al... Andreas Müller
09:07 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
when testing a couple of times I got an EagerLoadingException caused by an NoHttpResponseException. May the test serv... Andreas Müller
08:33 PM feature request #6321 (Feedback): Implement parallel loading + progress bar for loading objects i...
When running a search and stopping it by running a new search the results of the first search are still (partly) avai... Andreas Müller
08:18 PM feature request #7429 (Closed): Improve parsing and formatting for VerbatimTimePeriod
Andreas Müller
08:11 PM feature request #7506 (Feedback): Allow direct editing bulk editor
To me this seems to be a duplicate for #7503. Can you please double check and if you agree close ticket as duplicate ... Andreas Müller
08:01 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor
The following comment was missing when the ticket was copied from #7439: "Additionally offering tooltips saying that ... Andreas Müller
07:56 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor
By the way, once we have >3 columns we will need horizontal scrolling anyway. So maybe this can already be implemente... Andreas Müller
07:49 PM feature request #7518 (Feedback): remaining issues for usage of NatTable for bulkeditor
* possibility to copy from a cell content
* this works now except for the fact that in editing mode the right cli...
Andreas Müller
07:27 PM bug #7544 (Closed): Dragging a misapplication onto itself throws an exception in name editor
Disabling d&d seems to work. Advanced features copied to #7609 so we can close this ticket. Andreas Müller
07:15 PM bug #7603 (Closed): Changing a user group does not work as expected
As far as I understand the ticket this is fully fixed. Andreas Müller
02:27 PM task #7420: Import for higher taxon graph for phycobank
Andreas Müller wrote:
> What should be done with existing IAPT data. Should they be adapted to the new data model?
...
Andreas Müller
02:23 PM task #7420: Import for higher taxon graph for phycobank
What should be done with existing IAPT data. Should they be adapted to the new data model? Andreas Müller
02:07 PM task #7420 (In Progress): Import for higher taxon graph for phycobank
First version of import is ready and tested with Frey and WoRMS data running into empty local database.
Next step:...
Andreas Müller
02:05 PM Revision 40f4f84c (cdmlib-apps): minor
Andreas Müller
02:05 PM Revision cc9428e1 (cdmlib-apps): ref #7420 first version of phycobank higher classification import
Andreas Müller
02:03 PM feature request #7419 (Resolved): Provide example NormalImplicit import file for phycobank higher...
Wolf-Henning Kusber wrote:
> prefered: use a single excel sheet per classification
great, makes it easier
Andreas Müller
12:31 PM Revision d3f77ada (cdm-dataportal): minor
Katja Luther
10:12 AM Revision 7965ef92 (cdm-dataportal): add item list to table resolves the problem of rendering the ...
Katja Luther

08/09/2018

01:09 PM feature request #7419: Provide example NormalImplicit import file for phycobank higher taxon grap...
prefered: use a single excel sheet per classification Wolf-Henning Kusber
01:02 PM feature request #7419 (Feedback): Provide example NormalImplicit import file for phycobank higher...
There seems to be an open issue: As we decided to create a classification for each reference and create a new taxon p... Andreas Müller
11:10 AM feature request #7419 (Resolved): Provide example NormalImplicit import file for phycobank higher...
As we have decided on the format and an example file exists as attachement to #7420 I think we can close this ticket. Andreas Müller
11:07 AM feature request #7643 (Feedback): cdmlight export: for bibliographic short citation use the freet...
Andreas Müller
11:07 AM feature request #7643: cdmlight export: for bibliographic short citation use the freetext of the ...
This will throw an NPE if datePublished does not exist!!
Also it is a bit dangerous as freetext in some cases may ...
Andreas Müller
10:20 AM feature request #7643 (Resolved): cdmlight export: for bibliographic short citation use the freet...
Katja Luther
10:19 AM feature request #7643 (Closed): cdmlight export: for bibliographic short citation use the freetex...
mail of WB:
noch ein Problemchen mit dem Output:
Nepenthes Datenbank – Da habe ich die folgende Referenz:
sieh...
Katja Luther
11:03 AM feature request #7644 (Closed): Add "continued" flag to (Verbatim)Timeperiod
... to indicate that a reference (usually a database) is continously edited and has no end date (yet).
E.g. Berend...
Andreas Müller
10:44 AM task #7420: Import for higher taxon graph for phycobank
Please save future versions of the excel file in the current .xslx format, .xls is outdated. Andreas Müller
10:19 AM Revision ad53bf18 (cdmlib): ref #7643: use freetext for bibliographic short citation
Katja Luther

08/08/2018

01:22 AM feature request #7640: Update ISO country names where necessary
This is not related to vaadin but a general cdm issue.
There are a couple of issues related to ISO 3166, many of t...
Andreas Müller
02:59 PM feature request #7640 (New): Update ISO country names where necessary
Some of the currently used long labels are outdated. E.g. "Poland, Peoples Republic of" is now "Poland, Republic of".... Wolf-Henning Kusber
05:24 PM feature request #7642 (Rejected): PhycoBank Anzeige und Zugreifbarkeit von Basionymen in Vaadin (...
100233
Für die Eingabe einer Umkomination musste ich die Literatur für das Basionym anlegen, um das Basionym einzuge...
Wolf-Henning Kusber
03:47 PM feature request #7549 (Closed): Show tooltip for data aggregation in character matrix
Patrick Plitzner
03:39 PM feature request #7637 (In Progress): Handle intext references in CDM light
Andreas Müller
02:57 PM feature request #7637: Handle intext references in CDM light
the filter is implemented and is the default, with the configurator it is possible to configure, that needs to be imp... Katja Luther
02:28 PM feature request #7637 (In Progress): Handle intext references in CDM light
During cdm light export we may want to handle intext references correctly.
As a first step we simply should remove...
Andreas Müller
03:32 PM bug #7639: SpecimenTypeDesignationEditor: Altitude not saved and displayed properly
Only the verbatim field functions, see 100123 Wolf-Henning Kusber
02:52 PM bug #7639 (Closed): SpecimenTypeDesignationEditor: Altitude not saved and displayed properly
Registration: 100118 ff.
Altitude: Input 1618
Save-> Display in Vaadin =1
Altitude: Input 1618, than klick int...
Wolf-Henning Kusber
03:30 PM bug #7641 (Closed): Reference editor: Error when incerting several new authors into a new author ...
Collection team:
A collection team was built with new members as
Owsianny, P.M., Marciniak G. & Trawiński, K...
Wolf-Henning Kusber
02:54 PM bug #7638: problem with media data missing meta data
now the size is not set to 0 if an exception appears because of missing metadata. Katja Luther
02:41 PM bug #7638: problem with media data missing meta data
the original exception is:
~~~
java.io.IOException: Could not read block (block start: 504, block length: 4245350...
Katja Luther
02:39 PM bug #7638 (Resolved): problem with media data missing meta data
media imported via biocase sometimes do not show size and metadata and or exception "file not found"
AM:
Bei de...
Katja Luther
02:51 PM Revision 633a72e4 (cdmlib): do not throw an exception if metadata could not be loaded
Katja Luther
02:51 PM Revision 2d006ce7 (cdmlib): filter intext references in cdmlight export
Katja Luther
02:49 PM Revision c80855f5 (taxeditor): do not set size etc to 0 if loading meta data fails
Katja Luther
01:43 PM Revision 2d49766c (taxeditor): ref #7597 Use LongRunningTaskService for taxon aggregation
Patrick Plitzner
01:42 PM Revision 0f14b608 (cdmlib): ref #7597 Use LongRunningTaskService for taxon aggregation
Patrick Plitzner
12:58 PM feature request #6486: Implement handling of IntextReferences in dataportal
I just see that we do have types for cdm:reference and cdm:source. Probably the later one is usually better as it rep... Andreas Müller
09:41 AM Revision b5fcefe6 (taxeditor): catch possible widget is exposed exception
Patrick Plitzner
09:41 AM Revision 3a45849e (taxeditor): ref #7549 Add fallback tooltip
Patrick Plitzner
09:03 AM task #7636 (Closed): remove obsolete code which dissociates removed TypeDesignations from Registr...
`SpecimenTypeDesignationWorkingsetEditorPresenter.saveBean()` contains code which is no longer needed since #7077 is ... Andreas Kohlbecker

08/07/2018

06:40 PM Revision 0ceb2225 (cdmlib): ref #7597 Change label of aggregated taxon description
Patrick Plitzner
06:03 PM Revision dc45cce3 (cdmlib): ref #7597 Fix row wrapper creation for direct description children
Patrick Plitzner
04:52 PM Revision bd95f27d (cdmlib): ref #7597 Fix multi rep exception
Patrick Plitzner
04:52 PM Revision a40b31c1 (cdmlib): ref #7597 Extend compare wrapper to support all statistical measures
Patrick Plitzner
04:52 PM Revision 3b3f3609 (cdmlib): ref #7597 Use remote progress monitor for taxon aggregation
Patrick Plitzner
04:52 PM Revision 02d5b1b7 (cdmlib): ref #7597 Fix potential exception for multiple associated taxa
Patrick Plitzner
04:52 PM Revision d1238e5b (cdmlib): ref #7597 Implement taxon description aggregation
Patrick Plitzner
04:52 PM Revision 1210623a (cdmlib): ref #7597 Set taxon as cdm entity of update result
Patrick Plitzner
04:52 PM Revision 785b88aa (taxeditor): ref #7597 Adapt to service method changes
Patrick Plitzner
04:07 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
I just reactivated and tested a bit. I made some small changes I think. Patrick Plitzner
03:44 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Did you change anything or did you simply reactivate? Andreas Müller
04:00 PM Revision 6328ed42 (taxeditor): ref #7597 Use remote progress monitor for taxon aggregation
Patrick Plitzner
03:37 PM Revision 4bbec44a (cdmlib): cleanup
Andreas Müller
03:22 PM Revision c233acf5 (cdmlib): use MediaDTO in DerivateDTO
Katja Luther
03:01 PM Revision a692a96b (cdmlib): Merge branch 'develop' into feature/specimenPortal
Katja Luther
03:01 PM Revision 77993547 (cdmlib): smaller changes in SpecimenDTOs
Katja Luther
02:46 PM Revision 267da0d1 (cdm-dataportal): create an item_list for specimen page
Katja Luther
10:25 AM bug #7635 (New): ObjectNotFoundException during delete of synonym and name
~~~
login : w.berendsohn
editor version : 5.1.2
server : api.cybertaxonomy.org (cybertaxonomy.org) / caryo_nep...
Patrick Plitzner
10:24 AM bug #7634 (New): Timeout/Performance problems in Taxeditor
Walter
"ich bekomme (hier zuhause, eigentlich ein ganz guter Anschluss) ab und zu die untenstehende Fehlermeldung,...
Patrick Plitzner
10:22 AM bug #7633 (New): MySQLIntegrityConstraintViolationException - Duplicate entry during fact editing
Walter:
"ich habe 2 Notes zusammengefasst und da noch ein bisschen korrigiert, gab u.a. Meldung, ich glaube schon,...
Patrick Plitzner
10:20 AM bug #7632 (New): NullPointerException in EditFromSelectionWizard
Walter:
"ich habe im Bulk Editor eine existierende Generic Referenz mit der korrekten Book Section Referenz (war s...
Patrick Plitzner

08/06/2018

06:47 PM bug #7631 (Worksforme): PhycoBank Vaadin: Institution selected, edit with Collection code fails
http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/59ddc453-1333-4577-9823-ea9e3d9... Wolf-Henning Kusber
03:25 PM bug #7617 (Closed): Specimen TypesDesignations Editor - aus dem Editor heraus neu angelegter Coll...
Bug is fixed! Wolf-Henning Kusber
01:50 PM Revision 7c29c9d5 (taxeditor): ref #7597 Make taxon aggregation experimental
Patrick Plitzner
01:21 PM Revision 2400a412 (taxeditor): adapt editor to changes in biocase query
Katja Luther
12:57 PM Revision c9e06829 (taxeditor): adapt editor to changes in biocase query
Katja Luther
12:30 PM Revision 28459634 (cdmlib): adapt cdm light test to changes
Katja Luther
12:18 PM bug #7630 (Closed): blocking registration relations get lost after saving adding a typedesignatio...
closely related to #7629 Andreas Kohlbecker
12:16 PM bug #7629: creating a typification only registration should not be possible if the names protolog...
Hi Henning,
I modified the workflow for creating new registrations. I introduced more constraints regarding the ty...
Andreas Kohlbecker
12:05 PM bug #7629 (Resolved): creating a typification only registration should not be possible if the nam...
Applied in changeset commit:cdm-vaadin|11247507b69b5b1c062e3d6469d37b5e5cea94b3. Andreas Kohlbecker
12:04 PM Revision 11247507 (cdm-vaadin): fix #7629 restricting new registrations to those which make sense...
Andreas Kohlbecker
11:58 AM feature request #7626 (Duplicate): PhycoBank Angefangene Registrierungen erzeugen PhycoBank Ident...
Andreas Kohlbecker
11:58 AM bug #7582: prevent from creating empty registrations
The preferred solution to this problem would be store the new Registration only when a type designation was added and... Andreas Kohlbecker
11:53 AM Revision 96323255 (cdmlib): adapt tests to changes in biocase impot
Katja Luther
11:52 AM bug #7625 (Duplicate): RegistrationWorkingsetEditor: if a registered name is selected, the same ...
Andreas Kohlbecker
11:42 AM Revision d70a126f (cdmlib): all DTOs for cdm entities should extend TypedEntityReference
Katja Luther
10:44 AM Revision 3fccb9f5 (cdmlib): add hasImage to biocase import
Katja Luther
10:29 AM Revision b6e8128f (cdmlib): fix handling of sec reference in cdm light export
Katja Luther

08/03/2018

09:33 PM bug #7628 (Closed): Create registration for existing name (typification only) creates two registr...
problem solved.
in the workflow code a blocking registration was created for the typification only registration, t...
Andreas Kohlbecker
09:25 PM bug #7628 (Resolved): Create registration for existing name (typification only) creates two regis...
Applied in changeset commit:cdm-vaadin|2a2845cefcb5dd887ba96665180c97b5d63ff11c. Andreas Kohlbecker
08:44 PM bug #7628 (Closed): Create registration for existing name (typification only) creates two registr...
Start from the working set where the already registered name is listed and and select the name in the existing names ... Andreas Kohlbecker
09:24 PM Revision 2a2845ce (cdm-vaadin): fix #7628 removing misconception in workflow code
Andreas Kohlbecker
09:23 PM Revision d46672d0 (cdm-vaadin): improving readability of code
Andreas Kohlbecker
09:20 PM bug #7629 (Closed): creating a typification only registration should not be possible if the names...
Andreas Kohlbecker
08:37 PM feature request #7627 (New): registrationsystem prevents from creating duplicate registrations of...
in cases where a unregistered name exists in the datanbase it is possible to create two or more registrations for the... Andreas Kohlbecker
07:54 PM bug #7617 (Feedback): Specimen TypesDesignations Editor - aus dem Editor heraus neu angelegter Co...
the bug in #7590 has been fixed, please close this issue if the collections codes are found now. Andreas Kohlbecker
07:51 PM bug #7617: Specimen TypesDesignations Editor - aus dem Editor heraus neu angelegter CollectionCod...
Andreas Kohlbecker wrote:
> It seams as if only collections are found which also have a institute - Restriction OR m...
Andreas Kohlbecker
12:51 PM bug #7617: Specimen TypesDesignations Editor - aus dem Editor heraus neu angelegter CollectionCod...
It seams as if only collections are found which also have a institute - Restriction OR must be implemented as outer j... Andreas Kohlbecker
11:35 AM bug #7617: Specimen TypesDesignations Editor - aus dem Editor heraus neu angelegter CollectionCod...
Wird vielleicht auf dem Namen gesucht? Namen von Alteinträgen sind in der Auswahlliste, wenn ein Code da ist, wird de... Wolf-Henning Kusber
07:45 PM Revision def2a398 (cdmlib): ref #7590 fixing join types for restriction operations
Andreas Kohlbecker
06:53 PM feature request #7611 (Resolved): media types with media uris are clickable
Implemented, but I needed to display the link to the image as icon, which now directly follows the "[icon]". This was... Andreas Kohlbecker
06:47 PM Revision 60e522b7 (cdm-vaadin): re-enabling bookSecion as reference type
Andreas Kohlbecker
06:45 PM Revision 58a5f647 (cdmlib): ref #7611 implementing typeDesignation media service and MediaDTO
Andreas Kohlbecker
06:43 PM Revision cc780a77 (cdmlib): typo in documentation
Andreas Kohlbecker
06:42 PM Revision 723aa98c (cdm-dataportal): ref #7611 adding clickable external link to media specimen ty...
Andreas Kohlbecker
05:47 PM feature request #7626 (Duplicate): PhycoBank Angefangene Registrierungen erzeugen PhycoBank Ident...
Jede angefangene Registrierung erzeugt einen Blank Record, oder einen fast leeren Record mit PhycoBank Identifier. Es... Wolf-Henning Kusber
05:28 PM bug #7625 (Duplicate): RegistrationWorkingsetEditor: if a registered name is selected, the same ...
http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/1eb5742f-3e18-4970-bfa5-4a96e1d... Wolf-Henning Kusber
04:57 PM feature request #7624 (Closed): Note field for Reference in Vaadin
In the editorial process, users need editorial notes for references.
The Curator needs to internally store some info...
Wolf-Henning Kusber
04:57 PM feature request #4227: handle generated resources in eclipse workspace
Katja Luther wrote:
> I still have the error message
>
> Plugin execution not covered by lifecycle configuration...
Andreas Kohlbecker
04:06 PM feature request #4227: handle generated resources in eclipse workspace
I still have the error message
Plugin execution not covered by lifecycle configuration: org.apache.maven.plugins:...
Katja Luther
04:46 PM feature request #7458 (Closed): Note field for TaxonName , NameType and SpecimenType editors
Alles getestet, Perfekt! Ich nutze es z.B. für nicht eingebbare Daten oder Unklarheiten in den Daten. Wolf-Henning Kusber
04:40 PM Revision 90b55c3b (cdmlib): add missing loggin to remote controllers
Andreas Kohlbecker
04:39 PM Revision b21da74d (cdmlib): ref #7591 ReferencePropertyDefinitions adding missing data to 'all'
Andreas Kohlbecker
04:21 PM bug #7537 (Rejected): Taxeditor can not connect to restarted, added cdm instance
OK, it seems as this is not reproducible. I am closing the issue as rejected. Andreas Kohlbecker
04:09 PM bug #7537: Taxeditor can not connect to restarted, added cdm instance
1. I commented the campanula DB
1. Restarted the cdmserver
1. Tried to connect to instances that were already up du...
Patrick Plitzner
10:58 AM bug #7537: Taxeditor can not connect to restarted, added cdm instance
You need to **add a new cdm-remote instance to a cdmserver start only this instance and then try to connect the Taxed... Andreas Kohlbecker
07:59 AM bug #7537 (Feedback): Taxeditor can not connect to restarted, added cdm instance
Is this still an issue? The "Connect" button is not greyed out for me. I could also log in. Patrick Plitzner
03:30 PM bug #7623: missing or broken import issues for ABCD import
Katja Luther wrote:
> * ~~Bei der Suche mit Landesfilter GR habe ich grundsätzlich kein Ergebnis zurückbekommen. Auf...
Katja Luther
03:22 PM bug #7623 (In Progress): missing or broken import issues for ABCD import
Katja Luther
03:21 PM bug #7623: missing or broken import issues for ABCD import
Aufsammlungsdaten fehlen auch beim AlgaTerra New-Import. Wolf-Henning Kusber
03:18 PM bug #7623 (In Progress): missing or broken import issues for ABCD import
* Bei der Suche mit Landesfilter GR habe ich grundsätzlich kein Ergebnis zurückbekommen. Auf http://ww2.bgbm.org/Herb... Katja Luther
02:55 PM Revision f4115d78 (cdmlib): fixing wrong usage of findByTitle* Method with IIdentifiableEntitySer...
Andreas Kohlbecker
02:45 PM bug #7622 (Closed): RegistrationWorkingsetEditor: navigating to other pages with fresh registrati...
The RegistrationWorkinsetEditor leaves empty registrations in the database when a new 'typification only registration... Andreas Kohlbecker
02:43 PM bug #7615 (Closed): Registrations not searchable in the PhycoBank portal
Andreas Kohlbecker
02:42 PM feature request #7621 (Closed): registration search also covers typified names
The typified names associated with the typedesignations are not covered by this search. Maybe we need to extend the s... Andreas Kohlbecker
02:01 PM feature request #6740 (Closed): Popup Editor for NameTypeDesignation
works Andreas Kohlbecker
02:00 PM bug #7207 (Closed): TeamOrPersonField and PersonField comboboxSelect is configurable to use diffe...
is ok! Andreas Kohlbecker
01:59 PM bug #7344 (Closed): TaxonNamesEditor to fill authorship fields automatically if nomref and basion...
works! Andreas Kohlbecker
01:57 PM bug #7608 (Closed): TypeDesignationSetManager: string representations for media types are missing
Henning sagt: PASST! Andreas Kohlbecker
01:54 PM Revision e1dd683a (taxeditor): ref #7597 Disable aggregate menu item
Patrick Plitzner
01:53 PM bug #7574 (Closed): IllegalStateException: Multiple representations ... when saving ReferenceEdi...
WORKS! Andreas Kohlbecker
01:52 PM feature request #7570 (Closed): Institution editor implemented
Henning: the institution title is sufficient, address not needed! Andreas Kohlbecker
01:48 PM bug #7557 (Worksforme): TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving ...
this issue did not occure since 14 days, seems to be solved Andreas Kohlbecker
01:47 PM bug #7535 (Closed): TeamOrPersonField: remove OK button an select the chosen enitity immediately
the changes made for this issue caused a couple of bugs which are all solved now, can be closed now. Andreas Kohlbecker
01:46 PM feature request #6321 (Resolved): Implement parallel loading + progress bar for loading objects i...
Parallel loading is reactivated. I could not find any bugs until during random tests Patrick Plitzner
01:45 PM feature request #7533 (Closed): add typeStatus filter to registration list
new ticket with extended requirements: #7610 Andreas Kohlbecker
01:43 PM bug #7528: Allow changing the Registration status in the RegistrationWorkingsetEditor
Henning created an new and closely related ticket: #7618 Andreas Kohlbecker
01:41 PM task #7425 (Closed): Implement VerbatimTimeField for cdm-vaadin and use this in the ReferencePopu...
done and working Andreas Kohlbecker
01:40 PM bug #7353 (Closed): SpecimenTypedesignationsWorkingsetEditor: error on saving after changing kind...
Andreas Kohlbecker
01:38 PM bug #7353: SpecimenTypedesignationsWorkingsetEditor: error on saving after changing kindOfUnit
this no longer happens Andreas Kohlbecker
01:40 PM bug #7354 (Closed): DerivedUnitConverter handles associated SpecimenTypeDesignation correctly
seems to work Andreas Kohlbecker
01:37 PM task #7343 (Closed): PersonField allows editing the nomenclaturalTitle
works!!! Andreas Kohlbecker
01:37 PM task #7338 (Closed): Validate taxon name against the higher taxon name
works as expeceted Andreas Kohlbecker
01:36 PM feature request #7462 (Rejected): references in type footnotes are clickable links
Yes, no longer needed. Andreas Kohlbecker
01:31 PM feature request #7595 (Closed): PhycoBank Portal - Order Reference name
ok, maybe we could add one line space below the taxon name. Andreas Kohlbecker
01:28 PM feature request #7496 (Closed): TaxonNodes in cdm_taxontree can either link to taxon or reference...
fully solved and tested Andreas Kohlbecker
01:26 PM feature request #7495 (Closed): Registration page implemented
Is ready even if some bugs exists for which we have other tickets, closing this issue. Andreas Kohlbecker
01:24 PM feature request #7494 (Closed): RegistrationSearch implemented
Andreas Kohlbecker
01:24 PM feature request #7620 (Closed): RegistrationSearch implemented with Reference filter

* Reference (like search with wildcard)
see #7494
Andreas Kohlbecker
01:22 PM bug #7592 (Closed): Search Button PhycoBank Test
resolved and tested, add commit? Andreas Kohlbecker
12:31 PM Revision 6c7e59f3 (taxeditor): specimen admin prefs need to be saved
Katja Luther
12:04 PM Revision 32333a52 (cdmlib): adapt country path in abcd query
Katja Luther
11:59 AM feature request #7619 (New): PhycoBank ID Lesbarkeit im Vaadin Editor
Gute Idee: Im Modus preparation ist die ID etwas heller.
Schlecht: Überlagerung der ID mit den dunklen Elementen b...
Wolf-Henning Kusber
11:58 AM Revision 9392fe08 (cdmlib): adapt country path in abcd query
Katja Luther
11:53 AM Revision 02e81ecf (cdmlib): fixing wrong usage of findByTitle* Method with IIdentifiableEntitySer...
Andreas Kohlbecker
11:48 AM Revision f0ab4e90 (cdmlib): fixing wrong usage of findByTitle* Method with IIdentifiableEntitySer...
Andreas Kohlbecker
11:46 AM feature request #7618 (Duplicate): PhycoBank Curator rights
Curator can search "preparation", "ready", "curation" = user rights.
Curator needs"publish", "rejected"; add to cu...
Wolf-Henning Kusber
11:06 AM Revision 914fc748 (taxeditor): workaround for exception in loading image to see the imported meta...
Katja Luther
10:40 AM Revision a101359e (taxeditor): ref #7614 Catch negative index when getting the row object
Patrick Plitzner
10:30 AM Revision fb147efa (cdmlib): parse collection date for abcd import
Katja Luther
10:17 AM Revision 36d28440 (taxeditor): ref #7614 Fix possible IndexOutOfBoundException for label accumula...
Patrick Plitzner
09:08 AM Revision de2adfba (cdmlib): fix collector import if it is a single string value in gatheringAgent...
Katja Luther
09:08 AM Revision 4d0daece (taxeditor): ref #7614 Fix possible IndexOutOfBoundException
Patrick Plitzner
08:51 AM Revision e0609256 (taxeditor): Fix endless loop when searching for UUID in bulk editors
Patrick Plitzner
07:55 AM bug #7542 (Closed): Move synonym of homotypical group to taxon does not move the homotypical grou...
reviewed code and functionality in Editor. Seems good Patrick Plitzner

08/02/2018

05:52 PM bug #7617: Specimen TypesDesignations Editor - aus dem Editor heraus neu angelegter CollectionCod...
Korrektur: Collection NMW, Cardiff (IH Code) Wolf-Henning Kusber
05:49 PM bug #7617 (Closed): Specimen TypesDesignations Editor - aus dem Editor heraus neu angelegter Coll...
http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/d547a306-fb43-474d-88df-41a91ae... Wolf-Henning Kusber
03:17 PM Revision 66e37e5a (cdm-vaadin): typo
Andreas Kohlbecker
02:42 PM task #7546 (Closed): Better guidance for users when creating registrations for exising names
Label with explanations updated according to suggestion. Andreas Kohlbecker
02:42 PM Revision 3bcd130a (cdm-vaadin): ref #7546 Label with explanations for users improved
Andreas Kohlbecker
01:32 PM bug #7615: Registrations not searchable in the PhycoBank portal
We definitely need to extend the search so that typified names are also covered by the search. ... new ticket: #7621 Andreas Kohlbecker
01:29 PM bug #7615: Registrations not searchable in the PhycoBank portal
data issue solved, name added to registration Andreas Kohlbecker
11:39 AM bug #7615 (Feedback): Registrations not searchable in the PhycoBank portal
The search behaves correctly. "Planothidium taeansa" is not found because there is no registration for the name "Plan... Andreas Kohlbecker
12:08 PM Revision 5e1eb4fd (cdm-vaadin): ref #7591 ReferencePropertyDefinitions adding missing data to 'all'
Andreas Kohlbecker
11:49 AM Revision 4963a2c2 (taxeditor): fix IoobE in Biocase Provider Preference dialog
Katja Luther
11:15 AM Revision b4e4e474 (taxeditor): change Nomenclatural Status Type to Status in details view
Katja Luther
10:33 AM bug #6971: Collect all remaining appearances of multiple representation exceptions since 4.10
mail of WHK:
Hallo zusammen,
ein Problem beim Datacleaning:
Porphyra
Hatte eine ungeparste „generic“ Referen...
Katja Luther

08/01/2018

06:23 PM bug #7616 (Closed): reference page: show name types
The specimen table header is shown even when only name types are available. The name types should be displayed correc... Andreas Kohlbecker
05:53 PM bug #7615 (In Progress): Registrations not searchable in the PhycoBank portal
ID-Suche = Perfekt, alle 10 Fälle, in denen keine Anzeige erfolgte, funktionieren jetzt über die ID-Suche
Was im A...
Wolf-Henning Kusber
05:43 PM bug #7615: Registrations not searchable in the PhycoBank portal
ready for review. Andreas Kohlbecker
05:43 PM bug #7615 (Resolved): Registrations not searchable in the PhycoBank portal
Applied in changeset commit:cdm-dataportal|bb177c82fe3bf3c699fd30817cd82167f14fe47f. Andreas Kohlbecker
05:35 PM bug #7615 (In Progress): Registrations not searchable in the PhycoBank portal
This happens because the dataportal sends an empty querystring for the scientific name and the webservice is not igno... Andreas Kohlbecker
05:14 PM bug #7615 (Closed): Registrations not searchable in the PhycoBank portal
100002 Planothidium taeansa
100003 Planothidium naradoense
sind im Vaadin Editor über die Nummer suchbar
http://...
Wolf-Henning Kusber
05:43 PM Revision bb177c82 (cdm-dataportal): fix #7615 cleaning registration search parameter 'taxonNameFi...
Andreas Kohlbecker
05:09 PM Revision f88c28ee (cdm-vaadin): adapting assertion to changed testdata
Andreas Kohlbecker
04:51 PM Revision 8115e340 (cdm-vaadin): fixing problems in test dataset with hibernate sequences for user...
Andreas Kohlbecker
04:39 PM Revision 6b1127f8 (cdm-vaadin): fixing problems in test dataset with hibernate sequences for user...
Andreas Kohlbecker
02:27 PM bug #7614: IndexOutOfBoundsException after deleting in bulkeditor
PS: Das scheint an dem Record selbst zu liegen. Katja Luther
02:24 PM bug #7614 (Closed): IndexOutOfBoundsException after deleting in bulkeditor
mail of WB:
Hallo,
beim Springen auf einen Listeneintrag nach durchgeführtem Delete eines anderen bekomme ich u....
Katja Luther
02:23 PM Revision 6d9071b7 (cdm-dataportal): adding missing font awesome font css to registration serarch ...
Andreas Kohlbecker
11:07 AM feature request #7613 (New): Vaadin: Fehlervermeidung bei Anlegen einer Referenz
Wunsch: Dass bei der Eingabe einer Referenz der häufigste Fall eingestellt ist.
D.h. Wird eine neue Referenz angel...
Wolf-Henning Kusber

07/31/2018

06:13 PM feature request #7612 (New): CacheStrategy for MediaSpecimens
The DerivedUnitFacadeCacheStrategy has no support for `MediaSpecimen`s.
see #7608 for which the creation of a stri...
Andreas Kohlbecker
06:11 PM feature request #7611: media types with media uris are clickable
Good idea, than the "[icon]" string makes really sense. Wolf-Henning Kusber
05:59 PM feature request #7611 (Feedback): media types with media uris are clickable
It would be much easier to implement if the "[icon]" text would be clickable instead.
What do you think about this...
Andreas Kohlbecker
05:57 PM feature request #7611 (Closed): media types with media uris are clickable

Media types should be rendered in the following form depending on their type:
* **unpublished** (has collection ...
Andreas Kohlbecker
06:02 PM Revision 1158ebe8 (cdmlib): comment regarding #7608 in DerivedUnitFacadeCacheStrategy
Andreas Kohlbecker
06:00 PM bug #7608 (Resolved): TypeDesignationSetManager: string representations for media types are missing
completely solved, please review Andreas Kohlbecker
02:57 PM bug #7608 (In Progress): TypeDesignationSetManager: string representations for media types are mi...
Andreas Kohlbecker
12:12 PM bug #7608 (Closed): TypeDesignationSetManager: string representations for media types are missing

Media types are currently represented as:
* Antigua and Barbuda. Holotype,
After the comma data is missing.
...
Andreas Kohlbecker
05:55 PM Revision 7474a0ba (cdmlib): ref #7608 string representations for media types implemented
Andreas Kohlbecker
05:55 PM Revision 9630eead (cdm-vaadin): ref #7608 string representations for media types implemented - tests
Andreas Kohlbecker
05:11 PM feature request #7610 (Duplicate): Type search in PhycoBank Portal
List of „Type desgnation status“
Automatic Kommentar: unverständlich und unnötig
Epitype Kommentar: wichtig
Holo...
Wolf-Henning Kusber
03:17 PM Revision 3d526586 (cdm-vaadin): commenting org.hibernate.SQL logging
Andreas Kohlbecker
02:36 PM task #7596 (In Progress): PhycoBank Portal - Formatting
Andreas Kohlbecker
10:24 AM task #7596: PhycoBank Portal - Formatting
Nein, stört überhaupt nicht. Wolf-Henning Kusber
10:24 AM task #7596: PhycoBank Portal - Formatting
Wolf-Henning Kusber wrote:
> zu 7: Okay, wenn wir hier zwischen Vaadin User Interface und EDIT Portal unterscheiden ...
Andreas Kohlbecker
10:11 AM task #7596: PhycoBank Portal - Formatting
zu 7: Okay, wenn wir hier zwischen Vaadin User Interface und EDIT Portal unterscheiden können. Im Vaadin UI stören mi... Wolf-Henning Kusber
01:51 PM Revision bb9378b6 (taxeditor): fix compile error
Andreas Müller
01:47 PM bug #7544 (Resolved): Dragging a misapplication onto itself throws an exception in name editor
Katja Luther
01:46 PM bug #7544 (In Progress): Dragging a misapplication onto itself throws an exception in name editor
As a first implementation d&d for concept relations are not provided anymore.
For d&d to another name editor I crea...
Katja Luther
01:44 PM bug #7544 (Resolved): Dragging a misapplication onto itself throws an exception in name editor
Applied in changeset commit:taxeditor|b7e704af02bbd5214b09e110244470ab1969ad2a. Katja Luther
11:27 AM bug #7544: Dragging a misapplication onto itself throws an exception in name editor
Katja Luther wrote:
> I removed the possiblity to drop at a misapplied name, but should it be possible to drag a mis...
Andreas Müller
11:00 AM bug #7544 (In Progress): Dragging a misapplication onto itself throws an exception in name editor
I removed the possiblity to drop at a misapplied name, but should it be possible to drag a misapplied name and drop i... Katja Luther
01:46 PM feature request #7609 (New): drag & drop misapplied names from one name editor to another editor
copied from #7544:
To me it does not make sense to d&d a misapplication (or a ppSyn) within a name editor at all. We...
Katja Luther
01:42 PM Revision b7e704af (taxeditor): fix #7544: do not allow d&d for misapplied names
Katja Luther
01:27 PM task #7420: Import for higher taxon graph for phycobank
Hi, here comes the spread sheet with the first data for the import: attachment:Algen_Syllabus_NormalImplied_Test.xls
...
Andreas Kohlbecker
01:26 PM Revision 54ce28cf (taxeditor): fix compile error
Andreas Müller
01:19 PM bug #7603: Changing a user group does not work as expected
the collection of groups in user was not correctly updated. Katja Luther
01:19 PM bug #7603 (Resolved): Changing a user group does not work as expected
Applied in changeset commit:taxeditor|78b5b7f70fef88f8a0bebba7aa3f5e7d85545514. Katja Luther
01:18 PM Revision 78b5b7f7 (taxeditor): fix #7603: changing permission group in edior needs to change the ...
Katja Luther
01:00 PM Revision 0ea0a5f8 (cdm-vaadin): ref #7607 TypeDesignationSetManager: types without enclosing brac...
Andreas Kohlbecker
01:00 PM Revision b59ec1a6 (cdmlib): ref #7429 fix date parsing in name parser test
Andreas Müller
12:19 PM feature request #7429 (Resolved): Improve parsing and formatting for VerbatimTimePeriod
Applied in changeset commit:cdmlib|f8c23aa7bed4470dc98635a7880dee45456979e0. Andreas Müller
12:17 PM Revision 8480c302 (cdmlib): cleanup
Andreas Müller
12:17 PM Revision f8c23aa7 (cdmlib): fix #7429 improving verbatim time period parsing
Andreas Müller
11:57 AM task #7607 (Closed): TypeDesignationSetManager: remove brackets from type representations
Andreas Kohlbecker
11:57 AM task #7607 (Resolved): TypeDesignationSetManager: remove brackets from type representations
Applied in changeset commit:cdmlib|223a5fd3159ad97f0742a2baf1e9c594bb454fd1. Andreas Kohlbecker
11:55 AM task #7607 (Closed): TypeDesignationSetManager: remove brackets from type representations
Type representations are currently enclosed in brackets:
"*Type: Tanzania, United Republic of, River Baka, Konde-L...
Andreas Kohlbecker
11:57 AM Revision 223a5fd3 (cdmlib): fix #7607 TypeDesignationSetManager: types without enclosing brackets
Andreas Kohlbecker
11:56 AM bug #7593: Vaadin Layout Section Drop down
Wäre eine pragmatische Idee, ich müsste aber schauen, ob das praxisgerecht ist.
Mit Hinblick auf den Bulk-Editor,...
Wolf-Henning Kusber
11:48 AM bug #7593: Vaadin Layout Section Drop down
das ist ein anderes problem und hat mit zu langen titeln in der Auswahlliste zu tun. Vielleicht sollten wir die maxim... Andreas Kohlbecker
11:42 AM bug #7593: Vaadin Layout Section Drop down
Der Fehler tritt noch bei "New Registration" im drop down von "Choose from existing publications" auf. Das Bild in m... Wolf-Henning Kusber
11:25 AM bug #7593: Vaadin Layout Section Drop down
bitte nochmal testen, jetzt ist der server up to date. Andreas Kohlbecker
11:45 AM bug #7505 (Closed): IllegalStateException: Multiple representations problem when adding Annotatio...
I could no longer reproduce this issue. I am closing the ticket therefore. Andreas Kohlbecker
11:30 AM Revision 109968f7 (cdm-dataportal): ref #7605 removing trailing space from tagged text markup
Andreas Kohlbecker
11:08 AM bug #7606 (New): kompact display of CDM Point data
Point data like the exact location in gathering events should be displayed in a compact form including the
* sexa...
Andreas Kohlbecker
10:51 AM Revision 2228f46b (cdm-dataportal): supressing 'collecting areas' label when not data is to be shown
Andreas Kohlbecker
10:44 AM bug #6563: Display altitude, distance to Ground and watersurface correct handling of freetext
Applied in changeset commit:cdm-dataportal|dbc2bfa999e320fefb994358f70c28a612ee2f10. Andreas Kohlbecker
09:33 AM bug #6563 (Resolved): Display altitude, distance to Ground and watersurface correct handling of ...
Reopen for review as the freetext issue is not covered by #7578.
(Also I would prefer "Duplicate", not "Rejected"...
Andreas Müller
10:44 AM Revision dbc2bfa9 (cdm-dataportal): fix #6563 perferring freetext over atomized min max valued an...
Andreas Kohlbecker
10:31 AM bug #7542: Move synonym of homotypical group to taxon does not move the homotypical group correctly
Applied in changeset commit:taxeditor|f210d45341a085e74c27ab2eadb0dedb9c9c7ae2. Katja Luther
10:25 AM Revision f210d453 (taxeditor): fix #7542: the current taxon should not be selectable for moveSyno...
Katja Luther

07/30/2018

09:56 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
By the way, on production I got 21 results, on test only 20 (with the above tests) so data might have slightly changed. Andreas Müller
09:53 PM bug #7555 (Feedback): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lap...
I can reproduce this on production with the given URL, but I can NOT reproduce on
* test: http://test.e-taxonomy...
Andreas Müller
07:14 PM task #7596: PhycoBank Portal - Formatting
Hallo Henning,
zu 7)
Diese Klammern kann ich probelmlos entfernen, sie werden derzeit nur bei phycobank spezifi...
Andreas Kohlbecker
06:40 PM bug #7538: Concurrent editing transaction strategy: Taxon turned into synonym by other user prior...
Andreas Kohlbecker wrote:
> **NOTE:** A general problem or caveat of the data in the audit tables are lacking a time...
Andreas Müller
06:12 PM bug #7538: Concurrent editing transaction strategy: Taxon turned into synonym by other user prior...
Patrick Plitzner wrote:
> This could also be related to the same problem of concurrent editing:
>
> "...mal wiede...
Andreas Müller
06:39 PM bug #7605 (Closed): harmonize cdm_tagged_text_to_markup() with tagged text strategy in cdmlib
Andreas Kohlbecker
06:39 PM bug #7605 (Resolved): harmonize cdm_tagged_text_to_markup() with tagged text strategy in cdmlib
Applied in changeset commit:cdm-dataportal|0f129a6f839fddb958d1217ddaa1bd8319b06991. Andreas Kohlbecker
06:37 PM bug #7605 (Closed): harmonize cdm_tagged_text_to_markup() with tagged text strategy in cdmlib
see `eu.etaxonomy.cdm.strategy.cache.TaggedCacheHelper` for reference impelmentations Andreas Kohlbecker
06:39 PM Revision 0f129a6f (cdm-dataportal): fix #7605 fixing probelms with space around separators by ham...
Andreas Kohlbecker
06:36 PM feature request #7604 (New): Add user to AuditEvent
Especially for delete events it is difficult to find out **who** did run the event as created_by and updated_by is al... Andreas Müller
06:24 PM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name...
What is the current state here? For the release we should revert to non parallel loading I think as there are a coupl... Andreas Müller
05:52 PM bug #7602 (Closed): reference page: proper formating of taxonnames in registration summries
Andreas Kohlbecker
05:51 PM bug #7602 (Resolved): reference page: proper formating of taxonnames in registration summries
Applied in changeset commit:cdm-dataportal|afe99f4d4011a82f6232d6066b78d535321969df. Andreas Kohlbecker
04:33 PM bug #7602 (Closed): reference page: proper formating of taxonnames in registration summries
Name in registration summaries are rendered completely in italics even rank labels are italic
retrieve tagged titles...
Andreas Kohlbecker
05:51 PM Revision afe99f4d (cdm-dataportal): fix #7602 expand TaggedText->entityReference objects
Andreas Kohlbecker
05:17 PM bug #7541: Insufficient rights lead to missing focus in name editor
moved the second part of the description to a new ticket: #7603 Andreas Müller
05:12 PM bug #7541: Insufficient rights lead to missing focus in name editor
we should urgently address the rights issues in taxeditor. Otherwise soon all users that should have limited rights w... Andreas Müller
05:15 PM bug #7603 (Closed): Changing a user group does not work as expected
Copied from #7541:
Da gleich der nächste Bug: Wenn man im Person Editor bereits eine Gruppe zugeordnet hatte (in d...
Andreas Müller
04:47 PM bug #7537: Taxeditor can not connect to restarted, added cdm instance
Not sure if this is really a taxeditor ticket. However, we should test (and fix it soon).
KL/PP can you please de...
Andreas Müller
04:30 PM bug #7542: Move synonym of homotypical group to taxon does not move the homotypical group correctly
Please also remove the current taxon from the search dialog.
Patrick, can you however to the review already for th...
Andreas Müller
04:20 PM Revision 68f3553a (cdmlib): ref #7429 fixing test for verbatim time period parsing
Andreas Müller
04:05 PM bug #7601 (Closed): date published time period in reference page shows 'to' even if end date is m...
Andreas Kohlbecker
04:04 PM bug #7601 (Resolved): date published time period in reference page shows 'to' even if end date is...
Applied in changeset commit:cdm-dataportal|c0223d83af6fcd3403f41662078ab48d929bab1f. Andreas Kohlbecker
01:24 PM bug #7601 (Closed): date published time period in reference page shows 'to' even if end date is m...
Andreas Kohlbecker
04:04 PM Revision c0223d83 (cdm-dataportal): fix #7601 fixing timeperiod with only start value
Andreas Kohlbecker
03:42 PM bug #7593: Vaadin Layout Section Drop down
Fehler tritt im Test-System noch auf. Wolf-Henning Kusber
03:36 PM feature request #7594: RegistrationWorkingsetEditor click on new serveral times
"new name" is meant.
After clicking on "new name" the system needs some time to open the next form/dialog. If the bl...
Wolf-Henning Kusber
10:05 AM feature request #7594 (Feedback): RegistrationWorkingsetEditor click on new serveral times
can you please elaborate your request a bit more?
I don't quite understand which button you are referring to. The R...
Andreas Kohlbecker
03:23 PM bug #7592: Search Button PhycoBank Test
http://test.e-taxonomy.eu/dataportal/preview/phycobank/
Firefox
Seite vollständig geladen
Wolf-Henning Kusber
09:45 AM bug #7592 (Feedback): Search Button PhycoBank Test
Ich habe keine Probleme mit dem Search-button-icon.
Wurde die Seite denn vollständig geladen oder war sie noch ni...
Andreas Kohlbecker
01:55 PM Revision 842cca86 (cdmlib-apps): ref #7530 add activators for CaryoSppIdentifier import and WfoAc...
Andreas Müller
01:53 PM feature request #7429 (In Progress): Improve parsing and formatting for VerbatimTimePeriod
Andreas Müller
01:51 PM Revision 18bfc099 (cdmlib): ref #7530 final changes for WfoAccess import
Andreas Müller
01:51 PM Revision 72bf1d96 (cdmlib): ref #7429 "verbatimDate" [realDate] format implemented for VerbatimT...
Andreas Müller
01:51 PM Revision 43234324 (cdmlib): ref #7530 latest changes to WfoAccess import
Andreas Müller
01:30 PM Revision fc169e34 (cdm-dataportal): ref #7599: add excluded fields for specimen
Katja Luther
01:05 PM feature request #7600 (Closed): public setters for entity collections
In model classes the setters for entity collections are protected or do not exist at all.
Only add*() and remove*() ...
Andreas Kohlbecker
01:00 PM feature request #7599 (In Progress): treeView for specimen data in dataportal
The current implementation provides all specimen with the whole tree with the first WS call, is it better to get firs... Katja Luther
12:37 PM feature request #7599 (In Progress): treeView for specimen data in dataportal
The specimen tab/page section should show the tree structure of the specimen. To avoid performance problems the data ... Katja Luther
12:47 PM Revision ff21181c (cdmlib): mend
ref #7599: minor Katja Luther
12:46 PM Revision abfe22d1 (cdmlib): ref
Katja Luther
12:42 PM Revision 98262d29 (cdm-dataportal): code cleaning
Katja Luther
10:27 AM feature request #7595: PhycoBank Portal - Order Reference name
please review Andreas Kohlbecker
10:23 AM feature request #7595 (Resolved): PhycoBank Portal - Order Reference name
Applied in changeset commit:cdm-dataportal|84e766b2d336588cb073dab03de2f547ac3f16c6. Andreas Kohlbecker
10:23 AM Revision 84e766b2 (cdm-dataportal): fix #7595 swapping position of registration summary and citat...
Andreas Kohlbecker
09:28 AM feature request #7598 (New): Grouping of Restrictions implemented
Since solving #7590 it is possible to logically combine Restrictions by AND and OR. To allow for really flexible sear... Andreas Kohlbecker
09:07 AM Revision e0e9bffb (taxeditor): ref #7597 Add taxon description aggregation context menu entry
Patrick Plitzner
09:05 AM Revision 22a0c719 (cdmlib): ref #7597 Refactor aggregation method + add taxon aggregation method
Patrick Plitzner

07/27/2018

09:11 PM bug #7593 (Duplicate): Vaadin Layout Section Drop down
this is rather a duplicate of #7593 than a subtask Andreas Kohlbecker
11:21 AM bug #7593 (Duplicate): Vaadin Layout Section Drop down
Drop down in Layout insert section not stable.
S.h. das Drop down Menue springt, wird breiter und schiebt damit das...
Wolf-Henning Kusber
09:10 PM bug #7591 (Closed): Vaadin Layout Reference new
Andreas Kohlbecker
09:09 PM bug #7591 (Resolved): Vaadin Layout Reference new
Applied in changeset commit:cdmlib|6f6eaedfdbbc6c717dd37d2403ac60d7d09d0fb9. Andreas Kohlbecker
10:51 AM bug #7591 (Closed): Vaadin Layout Reference new
Layout-Problem Reference new
![](Layout-vaadin-reference-new.PNG)
Wolf-Henning Kusber
09:09 PM Revision 6f6eaedf (cdmlib): fix #7591 ReferencePropertyDefinitions adding 'General' and using 'al...
Andreas Kohlbecker
04:09 PM Revision 5267abee (cdmlib): ref #7509 Add "computed" flag to description
Patrick Plitzner
04:09 PM Revision 683a6f90 (cdmlib): ref #7589 Improve description search when adding specimens to the matrix
Patrick Plitzner
04:09 PM Revision 1171c95a (cdmlib): ref #7597 Refactor aggregation method
Patrick Plitzner
04:09 PM Revision 94264387 (taxeditor): ref #7597 Adapt to refactored service method
Patrick Plitzner
03:26 PM bug #7597 (New): Aggregate and persist descriptions on taxon level
The aggregation will be done on taxon level with already aggregated/computed descriptions.
Patrick Plitzner
02:34 PM bug #7588 (Closed): ToOneRelatedEntityCombobox: edit button must not be enabled when value is null
Andreas Kohlbecker
02:19 PM task #7596: PhycoBank Portal - Formatting
Achtung, automatische Nummerierung stimmt nicht mit Screenshot überein. Wolf-Henning Kusber
02:11 PM task #7596 (Closed): PhycoBank Portal - Formatting
See screen shot below or (http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/reference/b2741740-7d... Wolf-Henning Kusber
02:12 PM feature request #7572 (Resolved): SpecimenTypeDesignationEditor: Collection combobox shows collec...
please review. Andreas Kohlbecker
02:11 PM Revision 359c3906 (cdm-vaadin): ref #7572 two bug fixes
Andreas Kohlbecker
02:02 PM Revision 09a9df91 (cdm-vaadin): ref #7572 also searching the institute titleCache when looking up...
Andreas Kohlbecker
01:53 PM feature request #7590 (Resolved): findByTitleWithRestrictions allows combining Restrictions by OR
Andreas Kohlbecker
08:40 AM feature request #7590 (In Progress): findByTitleWithRestrictions allows combining Restrictions by OR
Andreas Kohlbecker
01:40 PM feature request #7595 (Closed): PhycoBank Portal - Order Reference name
Change 1)in Reference 2) Name string to
1) Name string (2) in Reference
![](PhycoBank_Portal_Ref_Name.PNG)
Wolf-Henning Kusber
11:47 AM feature request #7594 (Closed): RegistrationWorkingsetEditor click on new serveral times
Vaadin Registration Workingset Editor
Click on "new name" starts a new name popup editor. The blue progressbar on ...
Wolf-Henning Kusber
11:15 AM Revision e9ad2b59 (cdmlib): ref #7590 documentation
Andreas Kohlbecker
10:56 AM bug #7592 (Closed): Search Button PhycoBank Test
TestPortal PhycoBank, Firefox 61.0.1 (64-Bit)
Bug: icon for search not visible.
![](Bug-Portal-PhycoBank.PNG)
Wolf-Henning Kusber
10:49 AM Revision d6eb6115 (taxeditor): ref #4611 i18n character matrix
Patrick Plitzner
08:50 AM Revision e0dcd1d7 (cdmlib): ref #7590 implementing AND and OR operator for restrictions and harmo...
Andreas Kohlbecker
08:50 AM Revision c696d82c (cdmlib): ref #7590 replacing not flag in restrictions by AND_NOT and OR_NOT op...
Andreas Kohlbecker

07/26/2018

05:30 PM Revision 897ab6d1 (cdmlib): Fix possible NoSuchElementException
Patrick Plitzner
05:30 PM Revision 240bf2da (cdmlib): ref #7589 Delete taxon node from descriptive data set
Patrick Plitzner
05:30 PM Revision d445b8eb (taxeditor): ref #7589 Update message for missing nodes for descriptions
Patrick Plitzner
04:56 PM Revision 0d1a532b (taxeditor): Fix possible NPE
Patrick Plitzner
02:37 PM feature request #7572 (In Progress): SpecimenTypeDesignationEditor: Collection combobox shows col...
Andreas Kohlbecker
02:36 PM feature request #7572: SpecimenTypeDesignationEditor: Collection combobox shows collection.code a...
The CdmFilterablePagingProvider is not yet including the institution titlecache in the search.
For this to impleme...
Andreas Kohlbecker
02:35 PM feature request #7590 (Closed): findByTitleWithRestrictions allows combining Restrictions by OR
see #7572#note-2 for details Andreas Kohlbecker
02:34 PM Revision c10f70e4 (cdm-dataportal): first steps of specimen page with DTOs
Katja Luther
02:13 PM bug #7588 (Resolved): ToOneRelatedEntityCombobox: edit button must not be enabled when value is null
Applied in changeset commit:cdm-vaadin|2965ff8869dba39344151eee9da003154865dc48. Andreas Kohlbecker
01:13 PM bug #7588 (Closed): ToOneRelatedEntityCombobox: edit button must not be enabled when value is null
The edit button of the ToOneRelatedEntityCombobox is enabled even if the value is null. Andreas Kohlbecker
02:13 PM Revision 2965ff88 (cdm-vaadin): fix #7588 updating buttons on setDataSource
Andreas Kohlbecker
01:40 PM Revision 78e01af4 (taxeditor): ref #7589 Use progress monitor client manager to load character data
Patrick Plitzner
01:36 PM feature request #7589: Performance, UX and stability patches for CharacterMatrix
changes:
commit:taxeditor|b4f09ad3c826e81124053685a7d946a3c9b10778
commit:taxeditor|b5a4b38f8c40957ef909259004fa5...
Patrick Plitzner
01:34 PM feature request #7589 (New): Performance, UX and stability patches for CharacterMatrix
This ticket is for collecting all the changes done to improve the stability and performance and the user experience o... Patrick Plitzner
01:04 PM Revision 8b405629 (cdmlib): Merge branch 'develop' into specimenPortal
Katja Luther
01:02 PM Revision 592f88ca (cdmlib): minor
Katja Luther
12:57 PM Revision 1104b973 (cdmlib): minor
Katja Luther
12:54 PM Revision b0412410 (cdmlib): move getFieldUnits to findFieldUnits
Katja Luther
12:27 PM Revision 6b53ead8 (cdmlib): first implementation for specimen page with DTOs
Katja Luther
12:19 PM Revision 4855bbd5 (cdmlib): adding new SpecimenOrObservationType and smaller changes
Katja Luther
11:48 AM bug #7366: TeamOrPersonField readonly if users lacks edit permissions
setting the datasource to readonly as it was implemented for this issue was causing problems with the ToOneRelatedEnt... Andreas Kohlbecker
11:47 AM bug #7586: com.vaadin.data.Property$ReadOnlyException on opening TypeSpecimenWorkingsetEditor
This should be solved now! Andreas Kohlbecker
11:41 AM bug #7586: com.vaadin.data.Property$ReadOnlyException on opening TypeSpecimenWorkingsetEditor
for solving #7366 the datasource is set in `TeamOrPersonField.adaptToUserPermissions()` to readonly if the the lacks ... Andreas Kohlbecker
08:07 AM bug #7586 (Resolved): com.vaadin.data.Property$ReadOnlyException on opening TypeSpecimenWorkingse...
Applied in changeset commit:cdm-vaadin|bbdd609fd9f9a504f0225c98ce01c8f4b19931f9. Andreas Kohlbecker
08:05 AM bug #7586 (Closed): com.vaadin.data.Property$ReadOnlyException on opening TypeSpecimenWorkingsetE...
This ReadOnlyException is thrown when a user with insufficient privileges for editing the collector related to a Fiel... Andreas Kohlbecker
11:46 AM Revision 9fec29e5 (cdm-vaadin): Revert "fix #7586 temporarily setting the datasource readOnly sta...
This reverts commit bbdd609fd9f9a504f0225c98ce01c8f4b19931f9. Andreas Kohlbecker
11:45 AM Revision e1aaf938 (cdm-vaadin): ref #7586 not setting datasource to readOnly when user lacks perm...
Andreas Kohlbecker
11:23 AM Revision eabaedb0 (cdmlib): smaller changes in ABCD import
Katja Luther
10:09 AM Revision 0fdd8e68 (taxeditor): ref #4611 i18n character matrix
Patrick Plitzner
10:04 AM Revision d766bf95 (taxeditor): User service method to remove description from DescriptiveDataSet
Patrick Plitzner
10:02 AM Revision e8756d0b (cdmlib): Remove description from DescriptiveDataSet during deletion
Patrick Plitzner
10:02 AM Revision aeaef606 (cdmlib): Fix dataset removal method (possibly copy&paste error)
Patrick Plitzner
08:21 AM task #7587 (New): ToOneRelatedEntityReloader to listen and operate on PropertyDatasources directly?
This idea came up while working on #7586.
Currently the `ToOneRelatedEntityReloader` is attached as `ValueChangeLi...
Andreas Kohlbecker
08:07 AM Revision bbdd609f (cdm-vaadin): fix #7586 temporarily setting the datasource readOnly state to fa...
Andreas Kohlbecker

07/25/2018

07:28 PM Revision 8c8c78f4 (cdm-vaadin): avoide setting the readonly suffix multiple times
Andreas Kohlbecker
07:18 PM task #7573 (Closed): CollectionPopEditor superCollection only visible for advanced users
Andreas Kohlbecker
07:15 PM Revision 89292507 (cdmlib): ref #7573 adding AGTENTBASE to CdmPermissionClass and creating generi...
Andreas Kohlbecker
07:13 PM Revision eb75f8eb (cdm-vaadin): ref #7573 superCollection only visible for advanced users
Andreas Kohlbecker
04:48 PM bug #7585 (Closed): RegistrationCuratorRoleProbe does not only check the ROLE_CURATION

the check done in this class seems wrong:
~~~java
return a.equals(RolesAndPermissions.ROLE_CURATION)
...
Andreas Kohlbecker
04:36 PM feature request #7572 (Resolved): SpecimenTypeDesignationEditor: Collection combobox shows collec...
Applied in changeset commit:cdm-vaadin|d7edf1e089bd6f3a63904f86bf6160aaa4d1839a. Andreas Kohlbecker
04:36 PM Revision d7edf1e0 (cdm-vaadin): fix #7572 CollectionCaptionGenerator to show collection code and...
Andreas Kohlbecker
04:21 PM feature request #7570: Institution editor implemented
implemented with basic set of fields covering
* name
* code
* part of other institution
according to #7571 : ...
Andreas Kohlbecker
04:19 PM feature request #7570 (Resolved): Institution editor implemented
Applied in changeset commit:cdm-vaadin|90e5b45a71c8b48e029fbbbc5d0393022f0f041e. Andreas Kohlbecker
04:19 PM feature request #7571 (Resolved): Collection editor has field to select and edit the institution
Applied in changeset commit:cdm-vaadin|1faff10b568bf292fda37d44a8dd1502de16efcb. Andreas Kohlbecker
04:18 PM Revision 1faff10b (cdm-vaadin): fix #7571 adding intitute field to collection editor
Andreas Kohlbecker
04:17 PM Revision 90e5b45a (cdm-vaadin): fix #7570 implementing intitution editor with basic set of fields
Andreas Kohlbecker
12:15 PM Revision c7936eb4 (cdm-vaadin): TaxonNameDTO code cleaning
Andreas Kohlbecker
12:15 PM Revision 54b04612 (cdm-vaadin): CdmEntityAdapterDTO - documentation
Andreas Kohlbecker
12:03 PM Revision fdeb8328 (cdm-vaadin): remaming CdmEntityDecoratorDTO to CdmEntityAdapterDTO
Andreas Kohlbecker
11:00 AM bug #7543: Name Editor does not auto-scroll during dragging
this is not as easy as it seems, we need to write our own listener which listen on the mouse position and scrolls, wh... Katja Luther
08:26 AM feature request #7584 (New): Display unscary notification instead of "delete operation was abbord...
The error box which is currently shown after the attempt to delete a cdm entity which is still used by other entities... Andreas Kohlbecker
07:58 AM bug #7583 (Resolved): NPE on logout in registration list view
Applied in changeset commit:cdm-vaadin|10d75c612b4f8c6a2fed7ebe8f402d18917af536. Andreas Kohlbecker
07:57 AM bug #7583 (Closed): NPE on logout in registration list view

…und beim Logout:
~~~~
com.vaadin.server.ServerRpcManager$RpcInvocationException: Unable to invoke method click...
Andreas Kohlbecker
07:58 AM Revision 10d75c61 (cdm-vaadin): fix #7583 adding null check for authentication
Andreas Kohlbecker

07/24/2018

06:17 PM feature request #7551 (Closed): TypeDesignationSetManager provides summary as TaggedText
Andreas Kohlbecker
06:15 PM feature request #7551 (Duplicate): TypeDesignationSetManager provides summary as TaggedText
duplicate of #7348 Andreas Kohlbecker
06:13 PM bug #6695 (Closed): module cdmlib/services should not be an osgi bundle
Andreas Kohlbecker
06:13 PM bug #6695: module cdmlib/services should not be an osgi bundle
this has been solved by adding the following pluginExecution configuration to cdmlib/lifecycle-mapping-metadata.xml w... Andreas Kohlbecker
06:06 PM bug #7358 (Closed): Show warning when browser history back is used while popup editors are open
Andreas Kohlbecker
06:05 PM bug #7358 (Resolved): Show warning when browser history back is used while popup editors are open
Applied in changeset commit:cdm-vaadin|26e068777f74a5d5f07ac19a4ce727eecc16093d. Andreas Kohlbecker
06:05 PM Revision 26e06877 (cdm-vaadin): fix #7358 stopping navigation and showing dialog when modal dialo...
Andreas Kohlbecker
05:15 PM Revision 5c3feb25 (taxeditor): Fix saving routine for descriptions
Patrick Plitzner
04:41 PM Revision d486cbb0 (cdm-vaadin): upgrading to vaadin 7.7.13
Andreas Kohlbecker
04:11 PM bug #7582 (Duplicate): prevent from creating empty registrations
The RegistrationWorkinsetEditor leaves empty registrations in the database when a new 'typification only registration... Andreas Kohlbecker
03:59 PM bug #7542: Move synonym of homotypical group to taxon does not move the homotypical group correctly
please review Katja Luther
03:58 PM bug #7542 (Resolved): Move synonym of homotypical group to taxon does not move the homotypical gr...
Applied in changeset commit:cdmlib|eb95398b963a25d0d4d48bff12767dd4cd984de4. Katja Luther
03:59 PM Revision eb95398b (cdmlib): fix #7542: first remove synoným then add it to new accepted taxon to ...
Katja Luther
03:44 PM Revision bd0b8f0e (taxeditor): Refactor categorical combo box creation
Patrick Plitzner
03:37 PM bug #6379 (Worksforme): specimens of lectotypes not shown in portal
it seems as this has been fixed meanwhile. Andreas Kohlbecker
03:20 PM feature request #7462 (Feedback): references in type footnotes are clickable links
is this still needed with the new registration page? Andreas Kohlbecker
03:15 PM feature request #7581 (New): TaxonNamePopEditor: support for editing of all name relationships
Currently the TaxonNamePopEditor allows editing of basionyms, and of validations as well as replaced synonyms.
The...
Andreas Kohlbecker
02:53 PM feature request #7580 (New): User wishes: CharacterMatrix
* enter values in multiple cells simultanously
* copy&paste cell value (maybe via dragging)
Patrick Plitzner
02:49 PM bug #7579 (New): Set up pipelines in Jenkins to relace the build pipelines
Our jenkins setup are using the [build-pipeline-plugin](https://plugins.jenkins.io/build-pipeline-plugin).
Since J...
Andreas Kohlbecker
02:41 PM bug #7578: preseve null values in all mesurements during serialization of webservice responses
review by checking the example record here: http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/ta... Andreas Kohlbecker
02:38 PM bug #7578 (Resolved): preseve null values in all mesurements during serialization of webservice r...
Applied in changeset commit:cdmlib|d9f51acb041832197601f3343f4d3f6fd777b888. Andreas Kohlbecker
02:38 PM Revision d9f51acb (cdmlib): fix #7578 DefaultValueProcessor to serialize all null numbers as null
Andreas Kohlbecker
02:31 PM Revision b5a4b38f (taxeditor): Fix possible multi rep exception by not saving description separately
Patrick Plitzner
11:10 AM Revision 448cb0ea (taxeditor): ref #7575 Fix initial creation of Quantitative Data in cell editor
Patrick Plitzner
09:12 AM Revision c088e4b3 (cdmlib): ref #7223 add in null case to ReferencePropertyDefinitions to provide...
Andreas Kohlbecker

07/23/2018

06:20 PM Revision c31186f9 (taxeditor): ref #7575 Remove toggle button
Patrick Plitzner
06:18 PM Revision 08180809 (taxeditor): ref #7575 Label update for quantitative data
Patrick Plitzner
06:07 PM Revision aba1b9d9 (taxeditor): ref #7575 Merge aggregated and exact value cell editor
Patrick Plitzner
06:02 PM Revision b4f09ad3 (taxeditor): Use service method to find a description for a dataset
Patrick Plitzner
06:02 PM Revision d49e88fa (cdmlib): Add service method to find a description for a dataset
Patrick Plitzner
03:10 PM Revision 2d3d6556 (cdm-dataportal): base rank slecction with null option
Andreas Kohlbecker
01:10 PM bug #6563 (Rejected): Display altitude, distance to Ground and watersurface correct handling of ...
Rejecting this issue as only the symptom is described here.
The actual cause is false serialization of Double value...
Andreas Kohlbecker
01:08 PM bug #7578 (Closed): preseve null values in all mesurements during serialization of webservice res...
as reported in #6563 the double values which are `null` are serialized as `0.0` by json-lib this is plain wrong for a... Andreas Kohlbecker
12:20 PM bug #7577: Set Publish Flag for Subtree Dialog - Further Problems with Progressmonitor
In the end the cdm-remote instance crashed with a `java.lang.OutOfMemoryError: Java heap space` even if it has been s... Andreas Kohlbecker
12:18 PM bug #7577: Set Publish Flag for Subtree Dialog - Further Problems with Progressmonitor
A anylysis of the staktrace kane with jstack revels that it is `hibernate.search` taking all the CPU in order to inde... Andreas Kohlbecker
11:52 AM bug #7577: Set Publish Flag for Subtree Dialog - Further Problems with Progressmonitor
I tested again.
This time I set the publish flag to true, all taxa an synonmys intially are publish = false:
...
Andreas Kohlbecker
10:41 AM bug #7577 (New): Set Publish Flag for Subtree Dialog - Further Problems with Progressmonitor

Summarizing the insights from this examination I come to the conclusion that we need to work on the following:
1...
Andreas Kohlbecker
10:41 AM bug #7576 (Feedback): Set Publish Flag for Subtree Dialog - Problems with Progressmonitor
Andreas Kohlbecker
10:34 AM bug #7576: Set Publish Flag for Subtree Dialog - Problems with Progressmonitor
Hallo Katja,
ich weiß, dass du an diesem Problem gearbeitet hast, konnte aber kein Ticket dazu finden. Daher habe ...
Andreas Kohlbecker
10:30 AM bug #7576 (Closed): Set Publish Flag for Subtree Dialog - Problems with Progressmonitor
Setzen des Publish-Flags auf der kompletten Cichorienklassifikation:

Die Prozentanzeige bleibt bei 54.95% stehen ...
Andreas Kohlbecker
10:11 AM Revision 6e927caf (taxeditor): ref #7575 small layout changes
Patrick Plitzner
10:09 AM Revision bd814ea2 (cdm-dataportal): removing cdm_rankVocabulary_as_option() and replacing all usa...
Andreas Kohlbecker
08:31 AM Revision 67f32f09 (cdm-dataportal): renaming specimen_detivate_hierarchy_table to specimen_table ...
Andreas Kohlbecker

07/20/2018

10:06 PM Revision e2da4a33 (cdm-vaadin): ref #7223 improving the layout for all reference types by impleme...
Andreas Kohlbecker
06:17 PM Revision 7c3f1a46 (taxeditor): ref #7575 Add toggle button for aggregated/exact quant data editing
Patrick Plitzner
05:50 PM Revision a42acd70 (taxeditor): ref #7575 Refactor label accumulation
Patrick Plitzner
05:42 PM bug #7557 (Resolved): TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a ...
Andreas Kohlbecker
05:42 PM bug #7557 (Feedback): TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a ...
I can no longer reproduce this issue since #7574 is fixed.
Henning, please try be yourself to reproduce this bug. ...
Andreas Kohlbecker
11:31 AM bug #7557: TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a sub popup e...
[another report of the same bug:]
Lieber Andreas,

http://test.e-taxonomy.eu/cdmserver/phycobank_production/a...
Andreas Kohlbecker
05:34 PM bug #7574: IllegalStateException: Multiple representations ... when saving ReferenceEditor with ...
I hope and think that this issue is finally fixed now.
please review.
Andreas Kohlbecker
05:07 PM bug #7574 (Resolved): IllegalStateException: Multiple representations ... when saving ReferenceE...
Applied in changeset commit:cdm-vaadin|1641827e91d78dc483e225d1265e88d317e5d981. Andreas Kohlbecker
01:06 PM bug #7574 (Closed): IllegalStateException: Multiple representations ... when saving ReferenceEdi...
IllegalStateException: Multiple representations when saving ReferenceEditor with in Refercence
This happens when c...
Andreas Kohlbecker
05:27 PM bug #7558 (Duplicate): IllegalStateException: Multiple representations ... when saving first typ...
resolved also through the changes made for #7574, so this is clearly a duplicate Andreas Kohlbecker
05:25 PM Revision 4f0afd36 (cdm-vaadin): navigating to RegistrationStart after Reference deletion in empty...
Andreas Kohlbecker
05:09 PM Revision cd661671 (cdm-vaadin): removing useless select clean
Andreas Kohlbecker
05:08 PM Revision 46b6ab50 (cdm-vaadin): removing old commented code
Andreas Kohlbecker
05:07 PM Revision 1641827e (cdm-vaadin): fix #7574 adding the ToOneRelatedEntityReloader to the TeamOrPers...
Andreas Kohlbecker
02:43 PM Revision d12e0f5d (taxeditor): ref #7575 Enable quantitative dialog cell editor
Patrick Plitzner
01:11 PM Revision b119ef11 (taxeditor): ref #7575 Add (still disabled) quantitative dialog cell editor
Patrick Plitzner
01:10 PM feature request #7575 (Closed): Implement advanced quantitative cell editor
Editor should have two states:
* Edit a list of exact values
* edit aggregated values like min, max, etc.
Impr...
Patrick Plitzner
12:08 PM task #7573 (Closed): CollectionPopEditor superCollection only visible for advanced users
super collection field only visible for selected users (Role=CURATOR|ADMIN)
First of all can the concept of the su...
Andreas Kohlbecker
12:02 PM feature request #7572 (Closed): SpecimenTypeDesignationEditor: Collection combobox shows collecti...
this is required because ...
Fall 3: Es gibt einen Code, der identisch mit einen Index Herbariorum Code ist (NWU) ...
Andreas Kohlbecker
12:00 PM feature request #7571 (Closed): Collection editor has field to select and edit the institution
Wenn alle Institutionen einen Code haben, ist alles fein.

Normaler Weise gibt es 3 Fälle:
Fall 1: Code nac...
Andreas Kohlbecker
11:58 AM feature request #7570 (Closed): Institution editor implemented
An InstitutionPopupEditor is urgently needed for Collection and also important for References Andreas Kohlbecker
10:54 AM feature request #7569: SpecimenTypeDesignationEditor: Typedesignations should be ordered
fixed and ready for review. Andreas Kohlbecker
10:53 AM feature request #7569 (Resolved): SpecimenTypeDesignationEditor: Typedesignations should be ordered
Applied in changeset commit:cdm-vaadin|6055cbe049e1e8d7db866c07419c26f705acb5f8. Andreas Kohlbecker
10:52 AM feature request #7569 (Closed): SpecimenTypeDesignationEditor: Typedesignations should be ordered
[requested by Henning]:
Anfrage zur Sortierung der Typen:
Zeitlich und logisch gebe ich zuerst den Lectotypus an,...
Andreas Kohlbecker
10:53 AM Revision 6055cbe0 (cdm-vaadin): fix #7569 ordering typedesignations in workingset by type
Andreas Kohlbecker
10:28 AM bug #7566 (Resolved): TeamOrPersonField: some Persons can not be selected
Andreas Kohlbecker
08:34 AM bug #7566: TeamOrPersonField: some Persons can not be selected
These problems are related to the changes made for #7535
The root cause is the code line
~~~java
private v...
Andreas Kohlbecker
10:18 AM bug #7567 (Duplicate): SpecimenTypeDesignationEditor: Collection selection only set at second sel...
duplicate of #7566 Andreas Kohlbecker
10:14 AM bug #7568 (Closed): SpecimenTypeDesignationEditor: Collector Field not following the readonly sta...
Andreas Kohlbecker
10:13 AM bug #7568 (Resolved): SpecimenTypeDesignationEditor: Collector Field not following the readonly s...
Applied in changeset commit:cdm-vaadin|7278c990f5a49dd1a0fd17d9cd705717cfd4279f. Andreas Kohlbecker
08:56 AM bug #7568 (Closed): SpecimenTypeDesignationEditor: Collector Field not following the readonly sta...
Andreas Kohlbecker
10:13 AM Revision 7278c990 (cdm-vaadin): fix #7568 Collector Field readlony when editor is readonly
Andreas Kohlbecker
08:41 AM Revision 1fc42b13 (cdm-vaadin): ref #7566 solving problem with unselectable entities due to eager...
Andreas Kohlbecker

07/19/2018

06:09 PM bug #7567 (Duplicate): SpecimenTypeDesignationEditor: Collection selection only set at second sel...
reported by Hening:
Auswahl wird beim ersten Auswählen nicht angenommen, erst nach 2. Auswahl.
Andreas Kohlbecker
06:05 PM Revision 99529ce3 (cdm-vaadin): ref #7566 using the COLLECTOR_TITLE for the collector combobox
Andreas Kohlbecker
06:03 PM bug #7566: TeamOrPersonField: some Persons can not be selected
I found one minor issue while investigating this: The NOMENCLATURAL_TITLE was being used for the caption of the coll... Andreas Kohlbecker
05:51 PM bug #7566 (Closed): TeamOrPersonField: some Persons can not be selected
This issue only occurs with some few Persons:
[originally reported by Hennig]
Folgende Eingabeprobleme im speci...
Andreas Kohlbecker
05:15 PM Revision 098b6358 (cdm-dataportal): ref #7494 registration search filter layout improvements
Andreas Kohlbecker
05:05 PM Revision e6409ceb (cdm-dataportal): ref #7496 fixing erroneous acive state of tree items when in ...
Andreas Kohlbecker
04:52 PM Revision b49c60b7 (cdm-dataportal): ref #7494 fixing form action url in search registration block
Andreas Kohlbecker
04:37 PM feature request #7496: TaxonNodes in cdm_taxontree can either link to taxon or reference search r...
implemented and ready for testing Andreas Kohlbecker
04:37 PM feature request #7496 (Resolved): TaxonNodes in cdm_taxontree can either link to taxon or referen...
Applied in changeset commit:cdm-dataportal|8a4d078dfa6e2200f5e4b25c28d1bdcb7d82cf7b. Andreas Kohlbecker
04:37 PM Revision 8a4d078d (cdm-dataportal): fix #7496 cdm_taxontree can either link to taxon or reference...
Andreas Kohlbecker
03:55 PM Revision a3228c59 (cdm-dataportal): ref #7565 marking all code to be removed with comments
Andreas Kohlbecker
03:51 PM Revision 7ac8c744 (cdm-dataportal): ref #7565 marking all code to be removed with comments & ref ...
Andreas Kohlbecker
03:47 PM task #7565 (New): cdm_taxontree remove all code for using the tree to browse drupal term taxonomies
The cdm_taxontree has been developed to provide dual use:
1. Browse cdm classifications
1. Browse drupal term t...
Andreas Kohlbecker
03:25 PM bug #6356: taxontree sort order as in editor
no longer important for phycobank since we will model the classification with taxon relations Andreas Kohlbecker
03:14 PM feature request #7494: RegistrationSearch implemented
Implemented, please test. There are two ways to perform a search:
1. go to the registration search directly http:/...
Andreas Kohlbecker
03:08 PM task #7561 (Closed): OccurrencePortalController and FieldUnitDTO should not allow passing the det...
all done! Andreas Kohlbecker
03:06 PM feature request #6967 (Closed): RegistrationController identifier endpoints implemented
complete! Andreas Kohlbecker
03:05 PM feature request #7348 (Closed): RegistrationDTO webservices implemented
complete! Andreas Kohlbecker
11:43 AM feature request #7348: RegistrationDTO webservices implemented
Andreas Kohlbecker wrote:
> **TODO:**
>
> remove the following fields from DTO Serialization:
>
> * `typeDesi...
Andreas Kohlbecker
03:05 PM Revision 810710a0 (cdm-dataportal): ref #7494 registration search block can be used on any page
Andreas Kohlbecker
02:58 PM bug #7564 (Closed): remove Phycobank - Registration data - block and other outdated registration ...

~~also remove `render_registrations()` in name.inc?~~ need to keep this method since it is used in reder_taxon_or_n...
Andreas Kohlbecker
02:43 PM task #7562 (Resolved): Specimen table "Associated with" taxon is irritating and needs to be remov...
Hallo Norbert,
nach Rücksprache mit Patrick habe ich erfahren, dass die Anforderung das "assoziierte" Taxon bei de...
Andreas Kohlbecker
02:13 PM bug #7563 (In Progress): requests with %2F in URL are rejected by apache
Andreas Kohlbecker
02:00 PM bug #7563 (Closed): requests with %2F in URL are rejected by apache
requests like http://test.e-taxonomy.eu/cdmserver/phycobank_production/registrationDTO/identifier/http%+3+A%2F%2Fphyc... Andreas Kohlbecker
12:09 PM feature request #7495 (Resolved): Registration page implemented
ready for the review Andreas Kohlbecker
12:05 PM Revision 2a14e5d9 (cdm-dataportal): ref #7348 margin to separate items in the registrationWorkingSet
Andreas Kohlbecker
11:37 AM Revision 5e4cae59 (cdm-dataportal): ref #7495 bug fix
Andreas Kohlbecker
10:54 AM Revision 29cfa0a7 (cdmlib): ref #7348 implementing registrationWorkingSet service endpoint and ha...
Andreas Kohlbecker
10:52 AM Revision 828a0c8c (cdm-dataportal): code cleaning and adding missing doc
Andreas Kohlbecker
10:39 AM Revision 6cbefddc (cdm-dataportal): ref #7495 reference page lists registrations
Andreas Kohlbecker
08:29 AM Revision eec520d3 (cdmlib): ref #7561 removing associated name and protologue from OccurrencePort...
Andreas Kohlbecker
08:28 AM Revision cdf0f80b (cdmlib): ref #7348 ordering registrations by identifier
Andreas Kohlbecker
08:26 AM Revision afedac7e (cdmlib): ref #7348 stripping .json and .xml from reguest urls
Andreas Kohlbecker
08:20 AM Revision db725031 (cdm-dataportal): ref #7495 Registration page implemented
Andreas Kohlbecker
 

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