Activity
From 08/18/2018 to 09/16/2018
09/16/2018
- 11:47 PM Revision 4e956294 (taxeditor): Revert "ref #7761: invalid designations are displayed in name editor and details view like MAN"
- This reverts commit 8e0e024c985ffbbe2ce2421270927059c9abf0cc.
- 08:43 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- Andreas Müller wrote:
> OK, on th enew vesion of the cyprus database it works better. Especially the geo-search work... - 07:09 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- OK, on th enew vesion of the cyprus database it works better. Especially the geo-search works better.
But synonym ... - 02:52 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- The area search has a problem. Searching for "V*" and division1 returns NO result.
Searching for "*".
Searching ... - 02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- was it like this before. Is the sorting by some kind of percentage?
- 02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- The search seems not to be sorted. This is what I get for "V*"
Vitex
Vitis vinifera L.
Vitis
Vulpia brevis Bois... - 02:37 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- For names with multiple whitespaces it is even more tricky.
*wilhelm* returns "Achillea santolinoides subsp. wilhe... - 02:32 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- Wildcards in the same word seem to work. I tested with "*chi*ll*" on test.cyprus.
However, "*chi*ll*san*" to find... - 02:25 PM bug #5868 (Feedback): re-establish support for wildcard at start of query string (includes the query string '*' )
- I get a warning when searching for Achil* on test.cyprus. This is probably not related to this ticket but mention thi...
- 07:20 PM feature request #7658: use new taxon relationship DTO webservice in portal
- And ofcourse the footnotes for non-MAN data are still missing. #7658#note-37 or should this be fixed already? If yes,...
- 07:15 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
- 07:15 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Kohlbecker wrote:
> all mentioned bugs fixed!
Tested the 2 issues. Both work.
So the only open issue i... - 05:41 PM feature request #7658: use new taxon relationship DTO webservice in portal
- This problem is not release critical. We can fix it in 5.4. Maybe only moving up ppSyn to top would be nice but if no...
- 05:39 PM feature request #7658: use new taxon relationship DTO webservice in portal
- The sort order is still not correct. We should first have pro parte/partial synonyms, then invalid designations, then...
- 05:37 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
- all mentioned bugs fixed!
- 05:08 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Andreas Müller wrote:
> > "auct." (appended phrase) does not show up, e.g.
> >
> > * "... - 05:00 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name... - 03:49 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name" or "partial Misapplied ...
- 03:30 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> "auct." (appended phrase) does not show up, e.g.
>
> * "Achillea santolina" , non Test ... - 03:27 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
- 03:27 PM feature request #7658: use new taxon relationship DTO webservice in portal
- "auct." (appended phrase) does not show up, e.g.
* "Achillea santolina" , non Test , but should be "Achillea ... - 05:36 PM Revision 45aaf1fe (cdm-dataportal): depuplication of p.p.MAN and partial MAN with test
- 05:29 PM Revision e56e5d1c (cdm-dataportal): adding test case for no sensu but with Combination Authors and fixing according bug
- 04:50 PM Revision 7400fb33 (cdmlib): allow nom status parsing without name (with ICNAFP as default)
- 04:49 PM Revision 60a3cd56 (cdmlib): ref #7761 add isInvalidDesignation to TaxonRelationshipType
- 04:27 PM Revision 891e2f48 (cdmlib): ref #7761 add isInvalidDesignation to TaxonRelationshipType
- 04:27 PM Revision 47bf9558 (cdmlib): make authenticationManager lazy to avoid circals during start up
- 04:17 PM Revision 26c22583 (taxeditor): add English translation for par parte synonym
- 03:25 PM Revision bafcf277 (cdm-dataportal): adapting xpaths in test framework to modified rendering of footnotes, related to ref #7658
09/15/2018
- 03:15 PM task #7762: E+M: Handle "{non ..." annotations for misapplied names currently handled as appended phrase
- ~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
... - 03:02 PM task #7762 (New): E+M: Handle "{non ..." annotations for misapplied names currently handled as appended phrase
- ... check the names against existing names with exactly same reference and replace name if possible, also remove appe...
- 03:14 PM bug #7763: E+M (post?): Deduplicate "[non ..." blocking names for synonyms
- ~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
... - 03:13 PM bug #7763 (New): E+M (post?): Deduplicate "[non ..." blocking names for synonyms
- These are handled in BerlinModelTaxonRelationshipImport.handleSynonymNotes
About 150 cases, many of them easy to h...
09/14/2018
- 09:33 PM Revision a0557101 (cdm-dataportal): fix #5868 avoiding unneccesary "complex phrase" queries, fixes bug introduced while solving #4223
- 09:31 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- please review
- 09:30 PM bug #5868 (Resolved): re-establish support for wildcard at start of query string (includes the query string '*' )
- Applied in changeset commit:cdmlib|d6bdbc3d4a6d81dd3298913e1a31b64d76b88211.
- 09:30 PM Revision d6bdbc3d (cdmlib): fix #5868 restoring freetext search with leading wildcard and with empty query string, also fixes bug introduced while solving #4223
- 07:05 PM bug #7745 (Resolved): Subtree filter for dataportal services
- 03:16 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Kohlbecker wrote:
> Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs ... - 03:14 PM Revision a9dc4b35 (cdm-dataportal): ref #7658 other relationship reprentation based on DTOs fully implemented
- 03:12 PM Revision 31ab4cf9 (cdm-dataportal): ref #7686 Change label for no type status
- 02:27 PM Revision 7070571d (taxeditor): ref #7761: adapt property tester
- 02:23 PM bug #7686: Specimen title cache issues in data portal specimen table
- The full titleCache is now available and no warning anymore: http://test.e-taxonomy.eu/dataportal/preview/cyprus/cdm_...
- 01:36 PM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
- The titleCache issue is fixed.
I do not get the warnings on my local copy of the cyprus data base so I am not able... - 01:59 PM Revision 9657122e (cdmlib): ref #7760 Show name authors for type designations
- 01:45 PM Revision b7299e98 (taxeditor): ref #7761: fragment.xmi and plugin.properties file for invalid designation changes
- 01:43 PM Revision 8e0e024c (taxeditor): ref #7761: invalid designations are displayed in name editor and details view like MAN
- 01:42 PM Revision 619ccb21 (cdmlib): ref #7745 fix failing pathFrom if subtree is null
- 01:39 PM bug #7752 (Duplicate): accepted name context menu blocked after adding first misapplication
- 01:39 PM Revision 7118b734 (cdmlib): ref #7761: add isInvalidDeisgnation() method to taxon
- 01:37 PM feature request #7761 (Closed): Invalid designations should be displayed like misapplied names in name editor
- The taxon relationship invalid designation should be displayed like MAN and pro parte synonyms in editor.
- 01:34 PM Revision 0b4ac33b (cdm-dataportal): ref #7686 Fix NPE during specimen title generation
- 01:34 PM Revision d961cf30 (cdm-dataportal): ref #7759 adding more subtreefilter url patterns
- 01:24 PM Revision 87bf25dd (cdm-dataportal): ref #7686 Show titleCache as title of specimen page
- 12:28 PM Revision 4518f4b5 (cdmlib): ref #7745 upgrading springfox-swagger2 to circumvent bug related to @RequestMappings
- 11:35 AM bug #7047 (Feedback): Vaadin UI and View scope beans are not always destroyed correctly
- this should also be fixed now that #7742 is solved
- 11:25 AM Revision d1e04696 (cdmlib): cleanup
- 11:24 AM Revision d3dd860c (cdmlib): ref #7745 switch of required in getTaxonNodes
- 11:24 AM Revision 1251ffed (cdmlib): ref #7745 childNodesOf implemented
- 11:15 AM bug #7759: classification subtreefilter settings in portal
- fertig! das filtern im Portal scheint nun zu funktionieren.
- 11:14 AM Revision 6e2a9ba9 (cdm-dataportal): ref #7759 adding more subtreefilter url patterns and commenting redundant patterns
- 11:10 AM Revision 3769d06b (cdmlib): ref #7745 some exception handling for subtree filter
- 10:59 AM Revision fe2906f6 (cdmlib): de-dublicating doGetTaxonNodes() controller methods
- 10:07 AM Revision a8337363 (cdmlib): ref #7745 fixing workaround for override methods
- 09:43 AM Revision 5f218626 (cdmlib): ref #7745 workaround for duplicate TaxonPortalController getTaxonNodes Method
- 09:36 AM Revision a6150f24 (cdmlib): ref #7745 workaround for duplicate TaxonController get Method (for testing if this is the reason) for failing
- 09:24 AM Revision ba0ae53c (cdmlib): ref #7745 workaround for duplicate TaxonController get Method (for testing if this is the reason) for failing
09/13/2018
- 11:08 PM Revision d0df75bd (cdmlib): ref #7745 add subtree filter to missing methods (childNodesOf is still missing implementation)
- 11:05 PM Revision 8616c840 (cdmlib): cleanup
- 05:57 PM bug #7745: Subtree filter for dataportal services
- Also the following webservices need to get a subtree filter:
* /portal/taxon/{uuid}
* /portal/taxon/{uuid}/taxo... - 05:46 PM bug #7745: Subtree filter for dataportal services
- Andreas Kohlbecker wrote:
> the query parameter should be the same in all webservice uris: `subtree`
DONE: commit... - 05:43 PM bug #7745: Subtree filter for dataportal services
- the query parameter should be the same in all webservice uris: `subtree`
- 12:38 AM bug #7745: Subtree filter for dataportal services
- Subtree filter is now implemented for (rankSpecific)rootNotes and simple taxon search. API exists also for freetext s...
- 12:36 AM bug #7745 (In Progress): Subtree filter for dataportal services
- 05:45 PM Revision 905f70dc (cdmlib): ref #7745 harmonizing subtree query parameters
- 05:44 PM Revision 9bce681c (cdmlib): ref #7759 additional TaxonNode webservice endpoint and solving logging problems
- 05:37 PM bug #7759 (Resolved): classification subtreefilter settings in portal
- Applied in changeset commit:cdm-dataportal|80d21b78a68c7c45042e9b14b1e628e62cc7c1fc.
- 03:49 PM bug #7759 (Closed): classification subtreefilter settings in portal
- As fist step we need a simple subtreefilter field which takes the UUID of a TaxonNode.
This uuid is to be used as... - 05:37 PM Revision 80d21b78 (cdm-dataportal): fix #7759 implementing classification subtree filtering
- 04:49 PM feature request #7760 (New): Specimen compressed table issues
- **AK** :
hier scheint mir noch einiges offen. V.a. nehme ich Norbert und Tilo mit in cc, weil sie ja für die Requi... - 04:41 PM Revision 25fc25ca (cdm-dataportal): ref #7686 Change label of specimen page link
- 03:46 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRelationships()
- this method is also used for the synonyms, so this is not solved or obsoletd by #7658
- 03:43 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs fehlen noch - kommt in 3.4!
- 03:16 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
- 03:12 PM feature request #7658: use new taxon relationship DTO webservice in portal
- please review again
- 03:42 PM Revision 18c71cd1 (cdm-dataportal): ref #7658 using the taxonRelationDTO for other relationshipt also - footnotes are missing
- 03:17 PM task #7758 (New): Manual cleanup after E+M import
- The following tasks should be done manually after final E+M import:
* remaining issues from logfile
* deduplic... - 03:11 PM Revision 23ebb91f (cdm-dataportal): ref #7658 fixing final problems in MAN display related to appendedPhrase, citationDetail, footnotes
- 12:38 PM bug #7756 (Feedback): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- Unfortunately the solution is not complete for includeUnpublished = true.
In this case you again get an NPE as you... - 12:01 PM Revision dc231846 (cdmlib): fix #7757 first freetext search test working for subtree filter
- 11:38 AM Revision 0f5ab2e8 (cdmlib): cleanup
- 11:37 AM task #7757 (Resolved): Replace deprecated hibernate @Index annotation
- Applied in changeset commit:cdmlib|2b2a66ac3dcc84707a5c5bc631b1eb0241701cf6.
- 11:37 AM task #7757 (Closed): Replace deprecated hibernate @Index annotation
- ... from model classes
- 11:37 AM Revision 2b2a66ac (cdmlib): fix #7757 removed all deprecated hibernate @Index (and @Table) annotations from model
- 10:27 AM Revision 514ee70c (cdmlib): ref #7745 implement treeindex search in freetext search (untested)
- 10:25 AM Revision 1dc8e923 (cdmlib): cleanup
- 10:20 AM Revision 67d89439 (cdmlib): rename AbstractRelationshipEdge.relationshipType to be more generic
- 12:00 AM Revision 8b00105b (cdmlib): ref #7745 add subtree parameter to freetext search methods
09/12/2018
- 11:01 PM Revision d2f1dbf2 (cdmlib): ref #7745 fix bug in queries with subtree, some first test and cleanup
- 09:29 PM bug #7756 (Closed): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- 03:46 PM bug #7756 (Resolved): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- Applied in changeset commit:cdmlib|273b0cdc0b621b1a4314631f83bf9bba9491f9ea.
- 03:45 PM bug #7756: org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- the bug was introduced by the commit:e08838f0 for #3560
- 03:44 PM bug #7756 (Feedback): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
http://api.cybertaxonomy.org/corvidae/portal/taxon/147cb0d4-0f0e-4ba4-a234-e0b55d51677a/subtree/media.json?type=Ima...- 07:28 PM Revision bc3200a9 (cdmlib): ref #7745 fix syntax for node.treeindex in query
- 06:52 PM Revision dce01054 (cdmlib): ref #7745 subtree filter to taxon search (add missing parameter for queries)
- 05:07 PM Revision 603aecbe (cdmlib): ref #7666 doGetTaxonRelationshipsDTO groupMisapplications paramter default = false
- 03:53 PM Revision 26ab7583 (cdmlib): ref #7745 add subtree filter to taxon search (not yet tested for subtree != null)
- 03:47 PM feature request #7755: Implement advanced detail page for occurrences
- Andreas Müller wrote:
> We may think about changing to ".../occurrence/uuid" if we want to have a common access po... - 02:20 PM feature request #7755: Implement advanced detail page for occurrences
- Andreas Kohlbecker wrote:
> i think the specimens page should be extended to also show the fieldUnit data as well as... - 02:05 PM feature request #7755: Implement advanced detail page for occurrences
- Andreas Kohlbecker wrote:
> i think the specimens page should be extended to also show the fieldUnit data as well as... - 01:28 PM feature request #7755: Implement advanced detail page for occurrences
- i think the specimens page should be extended to also show the fieldUnit data as well as the data on all originals. H...
- 12:12 PM feature request #7755 (New): Implement advanced detail page for occurrences
- we also need a detail page for field units. At the moment we only can display the details of derived units.
implem... - 03:46 PM Revision 273b0cdc (cdmlib): fix #7756 allowig direction to be null again
- 01:37 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Does not yet work for pro parte and partial MANs.
This is also still an open issue. - 01:33 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Deduplication should include appendedPhrase part I think (this is also not yet implemented in the server side misappl...
- 12:55 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Exception for second MAN of Achillea santolinoides Lag.
>
>
> for this data on test.cyp... - 12:49 PM feature request #7658: use new taxon relationship DTO webservice in portal
- The MANs are still unsorted. In the above example you can see that Achillea santolina sensu Chrtek ... is before Achi...
- 12:45 PM feature request #7658: use new taxon relationship DTO webservice in portal
- I tested the above behavior. The reason is that secDetail differs (or misses in one case). secDetail is part of the s...
- 12:32 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
- Deduplication still does not work if everything is similar except for sensu and sensu detail. In the following screes...
- 01:29 PM feature request #7753 (Closed): use TaxonRelationshipFormatter for MAN and pro parte synonyms in name editor
- is fixed now.
- 12:23 PM feature request #7753 (Feedback): use TaxonRelationshipFormatter for MAN and pro parte synonyms in name editor
- ~~"&" is not yet masked and not shown (e.g. as separator for the last member in a team)~~
done - 09:48 AM feature request #7753 (Closed): use TaxonRelationshipFormatter for MAN and pro parte synonyms in name editor
- This replaces the implementation #6681
- 01:07 PM feature request #7335 (Closed): Allow editing of pro parte and partial synonyms in the same way as misapplied names in the NameEditor
- This is fixed.
- 12:38 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRelationships()
- This can probably be closed either as duplicate or as rejected (we use the TaxonRelationFormatter instead).
Can you ... - 12:37 PM Revision 35f94062 (taxeditor): english label for pro parte synonym added
- 12:25 PM Revision d78360bd (taxeditor): ref #7753: mask &
- 12:10 PM feature request #7599: treeView for specimen data in dataportal
- as long as the detail page for field units is not implemented the link to detail page of field unit is removed.
- 12:08 PM Revision a0f26798 (cdm-dataportal): remove link to detail page for fieldUnits
- 12:02 PM bug #3535 (Closed): Automatically update descriptive view if content changed
- 12:01 PM bug #7754 (New): tab order should be the same after saving of moved descriptions
- copied from #3535:
It would be nice if the tap order of the editors could be the same as before saving. Currently th... - 11:54 AM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > When creating a species a new Taxon needs to be created for t... - 11:52 AM feature request #7415 (Closed): Implement ExternalLinks for OriginalSources in TaxEditor
- 10:59 AM Revision 19f1d8b4 (cdmlib): ref #7745 add subtree filter also to ClassificationPortalListController
- 10:43 AM Revision c8d2852f (taxeditor): ref #7753: use Formatter in nameEditor for MAN and pro parte synonyms
- 10:33 AM Revision cc1a7529 (cdmlib): ref #7745 fix recursive call in deprecated method
- 09:59 AM Revision 18457b45 (taxeditor): revert use of TaxonRelationshipFormatter in NameEditro
- 09:35 AM Revision 55f79f52 (taxeditor): fix nomenclatural status problems
- 09:31 AM Revision 185155f8 (cdmlib): ref #7745 implement subtree filter for ClassificationController.rankSpecificRootNotes and .childNodes
- 09:12 AM Revision e54b05e2 (taxeditor): add eu.etaxonomy.cdm.strategy.cache to export packages in cdmlib
- 08:15 AM bug #7752: accepted name context menu blocked after adding first misapplication
- I think this is a duplicate for a known issue since e4.
Patrick, could you please link to the according ticket and...
09/11/2018
- 10:27 PM Revision edeb0e69 (cdmlib-apps): remove Cyprus user import
- 07:05 PM feature request #7599: treeView for specimen data in dataportal
- thank you for fixing the issues so far. Unfortunately there are still some:
1)
on this page the *Locality* shoul... - 12:02 PM feature request #7599: treeView for specimen data in dataportal
- the php problems are solved and the NPE in CollectionDto as well
- 08:23 AM feature request #7599: treeView for specimen data in dataportal
- There are still problems in **tree view** mode, see http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datapo...
- 06:40 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
- finally fully solved, please review
- 06:39 PM Revision 439f531a (cdm-dataportal): ref #7658 MAN deduplication by full MAN representation except sensu reference
- 06:19 PM bug #7752 (Duplicate): accepted name context menu blocked after adding first misapplication
- after adding a first misapplication in the name editor the context menu for the accepted name is no longer showing up...
- 05:04 PM feature request #7594 (New): RegistrationWorkingsetEditor click on new serveral times
- 04:58 PM bug #7742 (Closed): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- 04:56 PM bug #7742: vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- Applied in changeset commit:cdm-vaadin|c6b02b73bf43ef58ae109d89adb17fc4058d46b4.
- 10:35 AM bug #7742 (Resolved): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- Applied in changeset commit:cdm-vaadin|5b7fa02addec342fc2190abc52f66430aefc5533.
- 04:56 PM Revision c6b02b73 (cdm-vaadin): fix #7742 moving inner class SearchFilter into own class file RegistrationSearchFilter
- 04:28 PM bug #3535 (Feedback): Automatically update descriptive view if content changed
- This seems all to be fixed or moved to new ticket.
Only open issue is the tab order which may change by saving (#... - 03:23 PM feature request #7751 (New): Refactor drop down menus to allow empty selection
- Currently we are using the trash can to remove the selection of a drop down. It is more intuitiv to have an empty ele...
- 03:21 PM feature request #7750 (New): Allow multi selection for taxon assignment filter in specimen tree editor
- The following options should be available:
* Individuals Associations
* Type Designation
* Determination
The ... - 03:18 PM feature request #7749 (Rejected): Add "Link with taxon selection" as an icon to the toolbar of the specimen tree editor
- This button should only be active if one or more items are selected.
- 02:58 PM Revision 21cbdd69 (taxeditor): use TaxonRelationshipFormatter for NameEditor
- 02:54 PM Revision dd3ea7ac (cdmlib): ref #7666 replace StringUtils dependency by correct one
- 02:51 PM bug #6742 (Closed): IAE when using "Link with taxon selection" in Specimen-Editor
- This works now.
We discussed to move the menu entry to an icon to make it more intuitive and present for the user... - 02:24 PM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor
- This works now and can be closed. Only we could also change the label "External Link Type" to "Type", as this is clea...
- 09:10 AM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor
- I set this ticket to resolved and create a new ticket for the reduced spaces between the fields.
- 02:16 PM feature request #6559 (Closed): Order misapplied names in name editor
- Works fine. It can be discussed if setting the new elements to beginning is expected behavior. But for now we can lea...
- 02:09 PM Revision 013e3b2f (cdmlib): ref #7666 allow formatting without name part (2. test)
- 02:09 PM Revision 51249b12 (cdmlib): cleanup
- 02:03 PM Revision b127d201 (cdmlib): ref #7666 allow formatting without name part
- 01:59 PM Revision 127f0e03 (taxeditor): move mediaToggleButton to the top
- 01:43 PM Revision 3ee27021 (taxeditor): find all occurrences of Misapplikation in german text
- 01:36 PM Revision 82f2be03 (cdm-vaadin): fix #7742 unsubscribing other beans from event bus on dispose()
- 01:18 PM feature request #7726 (Closed): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- I checked at some places and it looks well. I think if we find places with to long labels we should decide in future ...
- 01:12 PM Revision fba774b1 (cdm-vaadin): fix #7742 unsubscribing from event bus when disposing presenter
- 12:19 PM Revision 7ecaccda (taxeditor): Change default taxon row color
- 11:53 AM Revision 31190572 (taxeditor): minor
- 10:53 AM Revision d6f9e690 (taxeditor): nomenclaturalStatus is created without status type
- 10:35 AM Revision 5b7fa02a (cdm-vaadin): fix #7742 disposing view, presenter and ehcaches when popupviews are closed
- 09:49 AM Revision 106e1cf9 (cdm-dataportal): ref #7599: fix php problems and code cleaning
- 09:11 AM feature request #7747 (New): Enhance display for URI element
- copied from #7415:
Can we reduce the space between the 3 fields? Usually I like this but here I think it is better t... - 08:57 AM Revision 8963d4f9 (cdmlib): avoid NPE when creating CollectionDto
- 08:50 AM Revision 098bc626 (taxeditor): Misapplication should be called Fehlanwendung in german
09/10/2018
- 05:31 PM bug #7686: Specimen title cache issues in data portal specimen table
- On the specimen page still the Class UUID formatting occurs.
Also there are 2 warning now.
Example from test.cy... - 05:27 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
- > Offenbar wird die Zeile “xType of” nur ausgegeben, wenn die Typuskategorie eingegeben wurde? Das ist bei mehrere Sp...
- 05:07 PM bug #7746 (Closed): NPE when deleting volatile DescriptionBase
- In Facts View, when I tried to delete a volatile (not yet persisted) description I got the following exception
~... - 04:29 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> & handling does not yet work correctly in teams. Probably a formatter issue #7666.
>
> ... - 11:10 AM bug #7500 (Resolved): Can't open both related accepted taxa of reused MAN
- Applied in changeset commit:taxeditor|a5dfa142a6e4540690c1b4c7f7ed3eaf176272c8.
- 10:30 AM bug #7500 (Feedback): Can't open both related accepted taxa of reused MAN
- Now, when trying to open the MANs in a Nameeditor I always get
Maybe I am wrong but also... - 01:29 PM Revision afbc0b6b (cdmlib): fixing ehcache.xml
- 01:27 PM Revision 8dbe55e4 (cdm-vaadin): cleaning up old commented stuff
- 01:26 PM Revision cbfdc57b (cdmlib): ref #7742 disposable CdmCachers
- 01:24 PM Revision 5b44f518 (cdmlib): typo
- 01:24 PM Revision 210948b1 (cdmlib): removing commented config line
- 01:19 PM Revision f291b6f3 (taxeditor): ref #7500 adapt text for selection message
- 01:17 PM Revision 0e56fac3 (cdmlib): Revert "ref #7729 removing unused ehcache.xml - all config is code based"
- This reverts commit cf4ebe93a29635ab57e6ec066c32cdb344bbd297.
- 01:16 PM bug #7743 (Rejected): test application contexts without <context:annotation-config />
- rejected since the remote test context is not a full context
- 01:14 PM bug #7743: test application contexts without <context:annotation-config />
- add the configuration:
~~~xml
<context:annotation-config />
<context:component-scan base-package="eu/eta... - 01:01 PM bug #7743 (Rejected): test application contexts without <context:annotation-config />
- the configuration `<context:annotation-config/>` to enable the annotation based spring configuration is missing in so...
- 01:05 PM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- Now again we have a line break for some labels which is not good for UX and not necessary I think.
Maybe this is OS ... - 12:19 PM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- 11:19 AM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- Again, in my original mail I mentioned to maybe change both, Nomenclatural title and Nomenclatural cache to Nomencl. ...
- 10:23 AM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- 09:15 AM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- As mentioned in the original mail (please always copy these mails completely - or at least the part that is relevant ...
- 12:54 PM feature request #7715 (Closed): Description sources should be handled same as DescriptionElement
- 11:27 AM feature request #7715: Description sources should be handled same as DescriptionElement
- changed the label of descriptions and descriptionelements sources to sources
- 11:10 AM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement
- Applied in changeset commit:taxeditor|b717449e43d02a06fe22849e383f8a6e922682aa.
- 09:48 AM feature request #7715: Description sources should be handled same as DescriptionElement
- Generally this ticket is ready and can be closed.
- 09:48 AM feature request #7715 (Feedback): Description sources should be handled same as DescriptionElement
- Andreas Müller wrote:
> The section is called "Description Sources" we should either relabel them "References" as in... - 12:51 PM Revision 733c1cfb (taxeditor): ref #3535: add check for dirty target when move description or description elements
- 12:44 PM Revision 89f9d5a7 (taxeditor): ref #7415: move name in source behind external links
- 12:24 PM Revision ef02d142 (taxeditor): fix english text for open MAN without taxon included in classification
- 12:21 PM Revision 1deb1e26 (taxeditor): Change label for warning
- 12:19 PM Revision 602ff4ba (taxeditor): ref #7726 Shorten label of nomenclatural title
- 11:49 AM Revision 272b6c5d (taxeditor): handle all MAN and Synonyms in setInputForRelatedTaxa to open in name editor
- 11:33 AM bug #7742 (In Progress): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- 11:32 AM bug #7742 (Closed): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- 11:32 AM Revision aa9f06a0 (taxeditor): change message if accepted name of MAN is not included in any classification
- 11:12 AM Revision cf4ebe93 (cdmlib): ref #7729 removing unused ehcache.xml - all config is code based
- 11:12 AM Revision 0af671fa (cdm-vaadin): ref #7729 removing unused ehcache.xml - all config is code based
- 11:10 AM Revision a5dfa142 (taxeditor): fix #7500: correct handling of MAN when opening in nameEditor
- 11:10 AM Revision b717449e (taxeditor): fix #7715: label for sources of descriptions and descriptionelements are changed to sources
- 11:09 AM bug #7729 (In Progress): potential ehcache CacheConfiguration problem
- 11:07 AM bug #7729: potential ehcache CacheConfiguration problem
- There are a couple of ehcaches being used in the cdmlib and in cdm-vaadin which need different configurations:
1) ... - 11:09 AM Revision 8b9e2e71 (cdmlib): ref #7729 setting maxEntriesLocalHeap for the cdmDefaultCache and activating ehcache jmx management beans for the CdmTransientEntityCacher
- 11:09 AM Revision f5b2b4ba (cdmlib): adjusting loglevel of bean initializers
- 10:51 AM bug #6850 (Closed): NPE when clearing label of "kind of" term in TermEditor
- Andreas Müller wrote:
> Much better now. Only the Supplemental data do not automatically synchronize their label. Do... - 09:54 AM bug #6850 (Feedback): NPE when clearing label of "kind of" term in TermEditor
- Much better now. Only the Supplemental data do not automatically synchronize their label. Don't know if this is a gen...
- 10:50 AM feature request #7741 (New): Refresh supplemental data view title when editing terms
- Copied from #6973 and #6850
When editing the label of terms in the details view the label is not reflected immedia... - 10:23 AM Revision ae60a433 (taxeditor): ref #7726 Shorten label of nomenclatural cache
- 10:17 AM feature request #7740 (New): Extract RCP styling to css file
- Many colors, font sizes and font styles can be defined declaratively in an external CSS file instead of in Java.
S... - 10:06 AM bug #7739 (New): If a volatile synonym is changed to a MAN it is not necessary to save first
- Currently when creating a MAN by first creating a synonym and then changing it to MAN WITHOUT saving the synonym befo...
- 09:39 AM Revision e4f9e245 (taxeditor): ref #7415 fix NPE in ExternalLinksElement
- 09:18 AM feature request #7717 (Closed): Implement "continued" in TimePeriod UI
- It works well now and is also intuitive IMO.
- 09:06 AM bug #7738 (Closed): NPE for cancel in Use existing media dialog of specimen tree editor
- I did not really test explicitly but the code looks reasonable
- 08:57 AM bug #7738: NPE for cancel in Use existing media dialog of specimen tree editor
- exception was
~~~
login : admin
editor version : 5.3.0.201809042248
server : test.e-taxonomy.eu (edit-test) / r... - 08:30 AM bug #7738 (Resolved): NPE for cancel in Use existing media dialog of specimen tree editor
- Applied in changeset commit:taxeditor|62079f0371543d34bde1fe550ecee2c0f7ea13eb.
- 08:30 AM bug #7738 (Closed): NPE for cancel in Use existing media dialog of specimen tree editor
- 08:35 AM Revision e7e44c01 (taxeditor): Merge branch 'develop' into taxonDescription
- 08:33 AM Revision 5c243ba9 (cdmlib): Merge branch 'develop' into taxonDecription
- 08:30 AM Revision 62079f03 (taxeditor): fix #7738 Fix potential NPE
- 12:17 AM bug #7736 (Duplicate): reusing media in the DescriptionElementDetailsView
- 12:02 AM bug #7736 (Duplicate): reusing media in the DescriptionElementDetailsView
- reusing media in the DescriptionElementDetailsView is not yet possible but should (needs discussion how the multiple ...
- 12:09 AM bug #7737 (Closed): Reference Details view does NOT give a multiple usage warning
- copied from #7706
testing other such warnings I realized that for references the warnings appear in the dialog but... - 12:07 AM bug #7733: show warning for multiple usage of media for SpecimenMedia
- remove first part of description as it has nothing to do with MediaSpecimen. It is handled in #7736 now in more complete
09/06/2018
- 09:39 PM feature request #7706 (Closed): Warning for reused Media is missing
- create several follow up tickets (#7732, #7733, #7734)
- 09:39 PM bug #7735 (New): reusing media in the DescriptionElementDetailsView
- copied from #7706:
reusing media in the DescriptionElementDetailsView is not yet possible but should (the multiple... - 09:38 PM bug #7734 (New): show warning for multiple usage also if the reference is not persisted yet
- copied from #7706:
when the new reference to a persisted and linked media object is not yet saved no warning is sh... - 09:35 PM bug #7733 (New): show warning for multiple usage of media for SpecimenMedia
- copied from #7706:
the warning is not shown in the Specimen Tree Editor for Media specimen. This is probably becau... - 09:33 PM bug #7732 (New): layout issues for the media details view
- copied from #7706:
* layout: the form type changer is not moved down and now appears beside the warning. This ... - 09:29 PM bug #7728 (Closed): NPE in wizard when changing type of reference
- 09:29 PM bug #7728: NPE in wizard when changing type of reference
- works fine. This was something like a copy&paste error because only the indention should be removed
- 03:54 PM bug #7728 (Resolved): NPE in wizard when changing type of reference
- Applied in changeset commit:taxeditor|656cc90a6ba5dbe24426373b9043fe92413bdcb2.
- 03:52 PM bug #7728: NPE in wizard when changing type of reference
- The class DateElement has a DisposeListener that disposes of the cdmFormFactory. But this is not how it should be han...
- 03:18 PM bug #7728: NPE in wizard when changing type of reference
- Patrick Plitzner wrote:
> It actually does not have anything to do with which type you choose or if it is an in-refe... - 03:02 PM bug #7728: NPE in wizard when changing type of reference
- It actually does not have anything to do with which type you choose or if it is an in-reference. The error can be rep...
- 02:58 PM bug #7728: NPE in wizard when changing type of reference
- Patrick Plitzner wrote:
> I cannot reproduce this. What exactly did you do?
>
> I opened a taxon in the name edi... - 02:58 PM bug #7728: NPE in wizard when changing type of reference
- open a reference and create a new inReference, set the type to webPage, after finish go back to the first reference a...
- 02:56 PM bug #7728: NPE in wizard when changing type of reference
- I cannot reproduce this. What exactly did you do?
I opened a taxon in the name editor -> Opened the reference wiz... - 01:04 PM bug #7728: NPE in wizard when changing type of reference
- This problem is caused by a cdmFormFactory which is set to disposed. at the moment we handle widget is disposed excep...
- 12:59 PM bug #7728 (Closed): NPE in wizard when changing type of reference
- Hallo Katja,
Beim Öffnen einer In-Referenz einer Referenz, die selber bereits im Dialog geöffnet ist, kam reproduz... - 09:06 PM bug #3535 (Resolved): Automatically update descriptive view if content changed
- 09:06 PM bug #3535: Automatically update descriptive view if content changed
- this ticket is fixed, created a new ticket for not moving image galleries ( #7731) and for the same moving functional...
- 10:22 AM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> Note: when moving full description to another taxon the new label of the description is: "El... - 10:14 AM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> Now, the fact is not removed from the old taxon. Only closing and reopening the taxon remove... - 09:40 AM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> Note: the selection dialog for the target taxon does show the "start" taxon too. This is not... - 09:33 AM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> Katja Luther wrote:
> > this fix was only for the menu entry in taxonnavigator, but I will ... - 08:42 AM bug #3535: Automatically update descriptive view if content changed
- But then we should separately allow to also move media/image galleries. Otherwise it is difficult to handle images wh...
- 08:05 AM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> By the way, moving facts also moves image galleries. For the user this might be unexpected a... - 09:06 PM bug #7731 (New): service method for moving descriptions should not move image galleries
- this is a follow up ticket for #3535#note-16
- 09:04 PM feature request #7730 (New): Add moving functionality to media view
- this is a follow up ticket from #3535#note-18
- 08:54 PM feature request #7433 (In Progress): new service method to get specimen by genetic AccessionNumber
- 08:52 PM bug #5394 (Rejected): Test if synonyms are imported correctly with ABCD import
- 08:44 PM feature request #7694 (Duplicate): cdmlight export output of types needs to be adapted
- 10:15 AM feature request #7694 (In Progress): cdmlight export output of types needs to be adapted
- This is already in progress I guess, together with #7700. How far are these duplicates and how far is this ticket res...
- 08:43 PM Revision 42c0aaf3 (cdmlib): code cleaning
- 07:23 PM Revision 782d98d9 (cdmlib): add TypeDesignationComparator
- 06:53 PM Revision e7f22f90 (cdmlib): fix TypeDesignationSetManagerTest by sorting typeDesignations
- 06:35 PM feature request #7599 (In Progress): treeView for specimen data in dataportal
- 06:35 PM feature request #7599: treeView for specimen data in dataportal
- the php issues should be solved and the tree view is shown now.
- 06:11 PM feature request #7599: treeView for specimen data in dataportal
- further minor php problems at the example of http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/ta...
- 02:38 PM feature request #7599: treeView for specimen data in dataportal
- php notice in http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/1ad7630a-290b-464f-99e3-43...
- 02:19 PM feature request #7599: treeView for specimen data in dataportal
- Andreas Kohlbecker wrote:
> sollte eigentlich nicht in `_description_list_group_add()` hinein. Besser den link sch... - 02:18 PM feature request #7599: treeView for specimen data in dataportal
- 2)
diese neue Funktionalität in `modules/cdm_dataportal/includes/pre-drupal8.inc`
~~~php
if (strpos($desc... - 06:30 PM Revision 9a124e57 (cdm-dataportal): fix problems in pages.inc
- 06:18 PM bug #7729 (New): potential ehcache CacheConfiguration problem
- the below warnings are reported frequently. ~~Interestingly it happens often short before the server freezes due to o...
- 06:09 PM Revision 59781fc6 (cdm-dataportal): fix problems in pages.inc
- 03:54 PM Revision 7b690399 (taxeditor): ref #7728 Removed unused toolkit member
- 03:53 PM Revision 656cc90a (taxeditor): fix #7728 Fix initialisation of form toolkit in DateElement
- 03:50 PM Revision ca542a03 (cdmlib): ref #7644 fix getYear() in test
- 03:45 PM feature request #7658: use new taxon relationship DTO webservice in portal
- & handling does not yet work correctly in teams. Probably a formatter issue #7666.
 - 03:38 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Deduplication must NOT take place if the rel. sec. differs (e.g. only one of the MANs has a rel. sec.). This is not y...
- 03:30 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Strange, with this entry:
>
> the webservice even does not return a second entry though i... - 03:27 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Strange, with this entry:
the webservice even does not return a second entry though it exi... - 02:46 PM feature request #7658: use new taxon relationship DTO webservice in portal
- But it works when adding an explicit sensu reference. But explicit sensu is not a requirement.
- 02:44 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Exception for second MAN of Achillea santolinoides Lag.
for this data on test.cyprus
!... - 02:31 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
- Does not yet work for pro parte and partial MANs.
- 03:44 PM bug #6276: Nomenclatural references show parsed date string instead of publication year
- Sorry, wrong ticket
- 03:36 PM Revision de769b0a (cdmlib): adapt OccurrenceController to changes in OccurrenceService
- 03:24 PM Revision dabc3001 (cdmlib): cleanup
- 03:21 PM Revision 484a120f (cdmlib): minor
- 03:14 PM Revision 86459d9e (cdmlib): fix TypeDesignationSetManager, use values of map of typeDesignations instead of map in mapAndSort
- 03:01 PM Revision f710aa8b (cdmlib): ref #7644 handle continued in getYear()
- 02:41 PM Revision 3f6d782a (cdmlib): ref #7599: further improvement for specimenDtos
- 01:52 PM bug #7585 (Closed): RegistrationCuratorRoleProbe does not only check the ROLE_CURATION
- 01:51 PM bug #7585 (Resolved): RegistrationCuratorRoleProbe does not only check the ROLE_CURATION
- Applied in changeset commit:cdm-vaadin|e080f6ded006655d94a94b876eb9c1fb2143d60f.
- 01:51 PM Revision e080f6de (cdm-vaadin): fix #7585 replacing RegistrationCuratorRoleProbe by RoleProber
- 01:49 PM feature request #6351 (Closed): jenkins cdmserver-index-job.groovy supports http basic authentication
- 11:56 AM feature request #6351 (Worksforme): jenkins cdmserver-index-job.groovy supports http basic authentication
- this is already implemented
- 01:37 PM bug #6850 (Resolved): NPE when clearing label of "kind of" term in TermEditor
- 08:49 AM bug #6850: NPE when clearing label of "kind of" term in TermEditor
- Let's call it different: show the current titleCache, and for a completely empty term the Class+UUID will be generate...
- 08:42 AM bug #6850: NPE when clearing label of "kind of" term in TermEditor
- So you want the default titleCache (class + UUID) to be shown everywhere except the text field, correct?
- 01:36 PM Revision 2aa1d458 (taxeditor): ref #6850 Fix label for null value
- 01:36 PM Revision 59d36b0c (cdmlib): fix bugs in abcd import
- 01:19 PM feature request #7680: Refactor TaxonNodeDetailElement
- the functionality is available now, but as described in the comment above we would need the functionality to create a...
- 12:53 PM feature request #7717: Implement "continued" in TimePeriod UI
- Andreas Müller wrote:
> Best would be to not show the "end" line at all if continued == true
I think it is cleare... - 12:51 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
- Applied in changeset commit:taxeditor|a1fbc94af7ad08a851eb87b92e7b8aa34b1f6a89.
- 12:51 PM Revision a1fbc94a (taxeditor): fix #7717: color of end fields in partial element are grey if disabled
- 12:30 PM bug #7500: Can't open both related accepted taxa of reused MAN
- now the chooseAcceptedTaxon dialog also used if a taxon is used as MAN and accepted taxon
- 11:47 AM bug #7500: Can't open both related accepted taxa of reused MAN
- ??
- 12:30 PM Revision f572c5c1 (taxeditor): fix #7500: adapt chooseAcceptedTaxon dialog also for taxa used as taxon and misapplication/proparte synonym
- 12:30 PM Revision 957dce80 (taxeditor): ref #7717: parse field should not be updated if it is the event source
- 12:15 PM feature request #7727 (New): Server availability indication in TaxEditor
- Split from #5209:
We may also think about having a status line icon/label which permanently (every 2-3 seconds) ch... - 12:06 PM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- Applied in changeset commit:taxeditor|9f90442961085aa4cca97151bca3ba19ac77520f.
- 12:05 PM feature request #7726 (Closed): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- 12:06 PM Revision 9f904429 (taxeditor): fix #7726 Change label of abbrev cache
- 12:05 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRelationships()
- is this a duplicate for #7658? If yes it can be closed as duplicate.
- 11:58 AM Revision 308f7bf5 (taxeditor): Remove unused methods
- 11:56 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- This is critical for version 5.4 as needed for E+M
- 11:53 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- Why has this been moved? It was for review.
- 11:51 AM feature request #7725: Implement server availability check
- Andreas Kohlbecker wrote:
> Using the same service endpoint, with a HTTP HEAD requests you will check for the availa... - 10:48 AM feature request #7725: Implement server availability check
- > We may also want to have 2 services, one for checking availability of the server (without DB check) and one checkin...
- 10:31 AM feature request #7725 (New): Implement server availability check
- Split from #5209:
Applications may need to check if the server is available.
These services could be used for t... - 11:47 AM Revision 750e9e69 (cdmlib): fix TypeDesignationSetManager
- 11:09 AM Revision bb76e361 (cdmlib): getTypeDesignations in TypeDesignationSetManager should return a collection
- 10:49 AM Revision 86bb4af4 (cdmlib): move createShortCitation to ReferenceCacheStrategy
- 10:47 AM feature request #5209: Improve server availability check
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Shouldn't we split this ticket. This one stays a "how to handle... - 10:31 AM feature request #5209: Improve server availability check
- Andreas Müller wrote:
> Shouldn't we split this ticket. This one stays a "how to handle the exception" best ticket.
... - 10:22 AM feature request #5209: Improve server availability check
- Shouldn't we split this ticket. This one stays a "how to handle the exception" best ticket.
And then we need a sep... - 08:05 AM feature request #5209: Improve server availability check
- Copied from #6355:
In the above case the interruption took place during lazy initialization:
~~~
login : w.ber... - 08:04 AM feature request #5209 (New): Improve server availability check
- Copied from #6355:
Andreas M.:
"wie schon öfters erwähnt, sollten wir hier ja versuchen, eine nutzerfreundlichere... - 08:01 AM feature request #5209 (Duplicate): Improve server availability check
- 10:22 AM Revision 96bf5e90 (taxeditor): ref #3535: change move message for facts
- 10:13 AM Revision 03c03694 (taxeditor): ref #3535: update both name editors after moving description oder description elements
- 09:57 AM bug #5430 (New): P2 update of Taxonomic Editor bundled with JRE does not work
- 09:39 AM Revision 5bfd26ae (taxeditor): ref #3535: source taxon should not be selectable for move description or description elements
- 09:39 AM Revision 62214ec0 (taxeditor): ref #3535: source taxon should not be selectable for target of moving factual data
- 08:01 AM task #6736 (Duplicate): Handle server not available user friendly
- 08:01 AM bug #6355 (Duplicate): Improve message if server is down
- 12:06 AM feature request #3955: Are TermVocabularies URIs needed
- Should be decided within additivity. Also compare with handling of other classes allowing remote data such as Referen...
- 12:01 AM feature request #4028 (Resolved): Distinguish Features and Characters
- Check if this is fully handled (a duplicate) of #6618
09/05/2018
- 11:41 PM feature request #3972: Strictly validate username to not null and not empty
- Still need to implement notEmpty, not null already exists. Also the TaxEditor does not allow to enter empty usernames...
- 11:24 PM bug #7677 (Closed): Nomenclatural Status is always set to nom illeg in details view
- It seems to work now as expected.
- 04:27 PM feature request #7717 (Feedback): Implement "continued" in TimePeriod UI
- 03:57 PM feature request #7717: Implement "continued" in TimePeriod UI
- Best would be to not show the "end" line at all if continued == true
- 03:55 PM feature request #7717: Implement "continued" in TimePeriod UI
- Also I would move the continued flag up, before "End" as it is something inbetween start and end. This may make the b...
- 03:50 PM feature request #7717: Implement "continued" in TimePeriod UI
- I don't know if this is related, but when entering data into the parse field now, the cursor always jumps to the begi...
- 12:59 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
- 12:59 PM feature request #7717 (New): Implement "continued" in TimePeriod UI
- the continued flag is implemented in editor now. at the moment the end date is removed when the continued flag is set...
- 12:56 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
- Applied in changeset commit:taxeditor|f36a68ee91d7e3c3c8365b13507c25af4da48b81.
- 03:56 PM feature request #7599: treeView for specimen data in dataportal
- Review Result:
1)
* method `create_cdm_specimen_or_observation()` needs either be named `render_cdm_specimen_o... - 03:42 PM feature request #7599 (Resolved): treeView for specimen data in dataportal
- starting review
- 03:43 PM bug #3535: Automatically update descriptive view if content changed
- By the way, moving facts also moves image galleries. For the user this might be unexpected as for the user it is not ...
- 03:39 PM bug #3535: Automatically update descriptive view if content changed
- Katja Luther wrote:
> this fix was only for the menu entry in taxonnavigator, but I will have a look at the problems... - 03:31 PM bug #3535: Automatically update descriptive view if content changed
- Upps, even more critical. Even selecting "Cancel" does not cancel the operation but still saves the target data and a...
- 03:18 PM bug #3535: Automatically update descriptive view if content changed
- this fix was only for the menu entry in taxonnavigator, but I will have a look at the problems in factual data view.
- 02:55 PM bug #3535: Automatically update descriptive view if content changed
- If the target taxon is dirty and unsaved and gives a warning. It says ".... all other unsaved changes will be saved"....
- 02:46 PM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> Now, the fact is not removed from the old taxon. Only closing and reopening the taxon remove... - 02:43 PM bug #3535: Automatically update descriptive view if content changed
- Note: ~~~when moving full description to another taxon the new label of the description is: "Elements moved from ..."...
- 02:41 PM bug #3535: Automatically update descriptive view if content changed
- Moving the full description seems to work correctly.
- 02:36 PM bug #3535 (Feedback): Automatically update descriptive view if content changed
- ~~~Now, the fact is not removed from the old taxon. Only closing and reopening the taxon removes it.
I tested this f... - 02:32 PM bug #3535: Automatically update descriptive view if content changed
- Note: ~~the selection dialog for the target taxon does show the "start" taxon too. This is not needed and should be f...
- 03:42 PM bug #7722 (Closed): NamePopupEditor: validation not working for rank genus
- perfect !
- 02:47 PM bug #7722: NamePopupEditor: validation not working for rank genus
- solved, please review
- 02:46 PM bug #7722 (Resolved): NamePopupEditor: validation not working for rank genus
- Applied in changeset commit:cdm-vaadin|e8e0ad3ba36e287dc5fc1c398bc505f3f0a5a38e.
- 02:04 PM bug #7722: NamePopupEditor: validation not working for rank genus
- It could be that people validate higher rank names, too.
- 03:05 PM feature request #7700: use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
- the mail from WB:
Hallo,
habe mir das angesehen. Es gibt ja praktisch 3 Fälle.
1. Gesamte information ist im ... - 03:03 PM feature request #7700 (Resolved): use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
- 03:03 PM Revision 12266827 (cdmlib): ref #7700: fide and parenthesis are separated separators in taggedText
- 03:01 PM Revision d847eb88 (cdmlib): ref #7700: use TypedesignationSetManager for creating TypeDesignationString for homotypic group in cdm light export
- 02:53 PM Revision 0405e234 (cdmlib): ref #7700: use TypedesignationSetManager for creating TypeDesignationString for homotypic group in cdm light export
- 02:46 PM Revision e8e0ad3b (cdm-vaadin): fix #7722 removing rank limitation for validations in name editor
- 02:27 PM bug #6742: IAE when using "Link with taxon selection" in Specimen-Editor
- I did not get the IAE anymore but also could not create any result. I tried to
* Select or not select a taxon in ... - 01:59 PM bug #4573 (Closed): Handle duplicate username, group or grantedAuthority correctly
- Works fine
- 01:49 PM feature request #7712 (Closed): PhycoBank UI Reference detail size
- perfect!
- 01:48 PM feature request #7624 (Closed): Note field for Reference in Vaadin
- Perfect!
- 11:11 AM feature request #7624: Note field for Reference in Vaadin
- please review
- 01:45 PM bug #7724 (New): PatternSyntaxException in GrantedAuthority search dialog
- See stacktrace. I looked at the code and wondered why first ALL GAs are loaded and then compared via regex. Is this s...
- 01:41 PM Revision 0c40f20e (taxeditor): cleanup
- 01:22 PM feature request #6475 (Closed): Make specimen tree editor collapsable and expandable
- Seems to work (though it took me some time to find the buttons. But it is general RCP way of putting them so it shoul...
- 12:56 PM Revision f36a68ee (taxeditor): fix #7717: add continued flag to timeperiod ui
- 12:48 PM bug #6850: NPE when clearing label of "kind of" term in TermEditor
- Generally this seems to work now. I also could not reproduce.
Only related issue: with empty label the label refre... - 12:37 PM bug #7371 (Closed): Deleting Polytomous Key throws NPE
- Works fine with nightly.
- 12:22 PM bug #7371 (Resolved): Deleting Polytomous Key throws NPE
- ... upps sorry, looks like I tested with production on test server , will test again
- 12:21 PM bug #7371 (Feedback): Deleting Polytomous Key throws NPE
- I still get
~~~
login : admin
editor version : 5.2.1
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
... - 12:35 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- Katja Luther wrote:
> if the continued flag is set and then setContinued(false) is called, this.end should be set to... - 12:24 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- if the continued flag is set and then setContinued(false) is called, this.end should be set to null
- 09:22 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- Can you please review? (Katja can you maybe also shortly review?)
- 12:03 PM bug #7622 (Closed): RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leaves empty registrations in the system
- no empty registrations since this has been fixed.
- 12:02 PM bug #7622: RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leaves empty registrations in the system
- this was originally a dataportal ticket which has erroneously be overwritten with other information. There is a new t...
- 12:01 PM bug #7667: NoHttpResponseException for large queries in bulk editor
- Difficult to test. Currently the test server does not respond very often. So it can't be decided if this is related.
... - 11:54 AM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement
- Applied in changeset commit:taxeditor|d2c62a2b15901df2b03ad04d2f384f523d781492.
- 09:20 AM feature request #7715: Description sources should be handled same as DescriptionElement
- The section is called "Description Sources" we should either relabel them "References" as in DescriptionElementDetail...
- 09:14 AM feature request #7715: Description sources should be handled same as DescriptionElement
- Generally we need to discuss if moving the sources from Supplemental Data to Details View means removing them at firs...
- 09:12 AM feature request #7715 (Feedback): Description sources should be handled same as DescriptionElement
- Generally it works, but there comes a selection dialog for choosing the source type. This needs to be removed as for ...
- 11:54 AM Revision d2c62a2b (taxeditor): fix #7715: set title to reference and remove selection dialog for type of original source
- 11:52 AM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- Added AK as this is maybe a general ticket about handling of disposed in CdmTransientEntityCacher so might be interes...
- 11:50 AM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- It still exists sometimes
~~~
login :
editor version : 5.3.0.201809042248
server : ()
schema version :
os... - 11:35 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
- I can't reproduce this exception, I tested with nightly and rem_conf_am
- 10:43 AM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor
- Adding an external link throws NPE
~~~
login : admin
editor version : 5.3.0.201809042248
server : test.e-taxon... - 09:14 AM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor
- 11:25 AM bug #7294: keys block can not be disabled in tabless taxon page
- review after release
- 11:25 AM bug #7691: Empty "Bibliography" section
- review after release
- 11:21 AM bug #7582 (Duplicate): prevent from creating empty registrations
- 11:12 AM bug #7702 (Closed): corrupted hibernate session after previous error during save operation
- hard to review - time will show - closing ticket
- 10:58 AM feature request #7412 (Closed): Allow editing supplemental data for DescriptiveDataSets
- Seems to work as expected
- 10:58 AM Revision 7a187dd5 (cdm-dataportal): adapting Cichorieae_SearchTest to modified tagged text processing
- 10:18 AM Revision 2cdf2e95 (cdm-server): adjusting loglevel of bean initializers
- 10:15 AM bug #7484 (Closed): Protected titleCache handling not correct in Reference detail view
- This specific issue seems to work consistent now.
General review of titleCache behavior is still open for review ... - 09:58 AM Revision 370ab182 (cdmlib): avoiding too extensive logging by commenting all hardcoded loglevels
- 09:39 AM Revision d3719f12 (cdm-dataportal): skipping table cell creation for null media in compose_cdm_media_gallerie()
- 09:01 AM feature request #7706: Warning for reused Media is missing
- Is there a Media editing dialog at all? I was searching to check if the warning also works there but didn't find any....
- 08:50 AM feature request #7706 (Feedback): Warning for reused Media is missing
- Generally the ticket can be closed as it works if the above issues are either closed or moved to a new ticket.
- 08:49 AM feature request #7706: Warning for reused Media is missing
- Generally it works but there are some questions regarding various issues:
* layout: the form type changer is not ... - 08:48 AM Revision 361d492e (cdm-dataportal): adapting tests to modified synonymy page dom
- 07:56 AM bug #7698: CCE when creating new datasource
- works fine
- 07:55 AM bug #7698 (Closed): CCE when creating new datasource
09/04/2018
- 06:03 PM bug #7723 (Closed): PhycoBank unpublished data must not be visible in Portal
- Unpublished data visible in Portal, not in scientific name search, but as list under a reference including published ...
- 06:02 PM Revision 644a7b6e (cdm-dataportal): fixing typeDesignation sort order
- 04:34 PM bug #7722 (Feedback): NamePopupEditor: validation not working for rank genus
- the validation has explicitly limited to ranks at SpeciesOrBelow. Is it sufficient to also include genus an below or ...
- 02:03 PM bug #7722 (Closed): NamePopupEditor: validation not working for rank genus
- Validation button of genus without function (basionym, replaced syn. okay)
![] (picture672-1.png) - 04:01 PM bug #7582 (Resolved): prevent from creating empty registrations
- this has been solved mean while. Add according commits to the issue and close it.
- 04:00 PM feature request #7712: PhycoBank UI Reference detail size
- fixed, please review
- 04:00 PM feature request #7712 (Resolved): PhycoBank UI Reference detail size
- Applied in changeset commit:cdm-vaadin|8626f58493068136e66ff322a6834ce24cf53310.
- 12:03 PM feature request #7712: PhycoBank UI Reference detail size
- place citation detail below reference field and make both 100%wide
- 04:00 PM Revision 8626f584 (cdm-vaadin): fix #7712 more space for the citation detail in name editor
- 03:17 PM feature request #7624 (Resolved): Note field for Reference in Vaadin
- Applied in changeset commit:cdm-vaadin|85743e03023024ec6a9d0449fa91aa6bc08f5f6e.
- 03:17 PM Revision 85743e03 (cdm-vaadin): fix #7624 notes field for the RegistrationPopupEditor implemented
- 03:16 PM feature request #7600: public setters for entity collections
- with commmit:a55fe58a I implemented the suggested setter for annotations. This implementation is not generic and shou...
- 03:14 PM Revision a55fe58a (cdmlib): ref #7600 implementing setAnnotations()
- 02:30 PM Revision 13bd883d (cdm-dataportal): ref #7658, ref #7720 restoring css rule for .relation_sign
- 01:59 PM bug #7721 (Rejected): Contraint Violation Exception on saving Reference Popup Editor
der Fehler trat auf, als in einem Workingset in Vaadin in einer Referenz eine Section angelegt worden war (Submitte...- 01:58 PM feature request #7706 (Resolved): Warning for reused Media is missing
- please review
- 01:57 PM Revision ad31468a (taxeditor): ref #7706: add warning if media is referenced by more than one object
- 01:49 PM feature request #7644 (Resolved): Add "continued" flag to (Verbatim)Timeperiod
- Applied in changeset commit:cdmlib|72b0e291fb98b3dcab357b7b5f0160bb8818a000.
- 09:52 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- We may not need a model change for this.
Instead we use a defined constant end date 9999-12-30 witch stands for "c... - 01:49 PM Revision 72b0e291 (cdmlib): fix #7644 fix failing test in parser and add "continued" parsing to all relevant patterns
- 01:44 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
- implementation complete, please review
- 01:43 PM feature request #7720 (Closed): use new taxonRelationshipsDTO webservice for all taxon relations
- for details see #6682
since completion of #7658 the taxonRelationshipsDTO is used for misapplied names and invlali... - 01:36 PM Revision 27c31249 (cdm-dataportal): ref #7658 test for invalid designation
- 01:24 PM bug #7719 (New): UX Problems with context menu access in Bulkeditors
- in den Bulkeditoren kann man keine neuen Entities anlegen, ohne dass die Tabelle zu sehen ist.
Klickt man nicht auf... - 12:58 PM Revision 67c8cca9 (cdm-dataportal): ref #7658 miapplied names and invalid designations modified to use the taxonRelationshipsDTO webservice
- 12:58 PM Revision 2978b0c8 (cdm-dataportal): ref #7658 moving all tagged text functions to separate file
- 12:58 PM Revision 83dc60b9 (cdm-dataportal): ref #7658 adapting cdm_taxonRelationships() to new taxon relationship DTO webservice
- - test case
- extending tagged text functions
- adapting misapplied name redering - 12:58 PM Revision a01ad6fe (cdm-dataportal): typos
- 12:58 PM Revision f659b3dd (cdm-dataportal): work in grogress - unfinished
- 12:58 PM Revision 116fb348 (cdm-dataportal): ref #7658 work in progress with errors
- 12:05 PM Revision c02da888 (cdm-dataportal): revert small bug coming with merge of feature/specimenportal
- 11:17 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- Andreas Kohlbecker wrote:
> the NARROW_NO_BREAK is now a constant in the UTF8 class.
>
> But what about the
>
... - 10:59 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- Andreas Müller wrote:
> should we change Assignee of this ticket?
No need to, the NARROW_NO_BREAK is now a consta... - 09:45 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- should we change Assignee of this ticket?
- 09:44 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- When implementing:
>add NARROW NO-BREAK (\u202F) after doubtful marker as requested in #5492
can you please add... - 10:57 AM Revision 530b3394 (cdmlib): ref #7666 NARROW NO-BREAK in UTF8 class
- 10:46 AM Revision b3ac03bf (cdm-dataportal): merge develop into feature branch
- 10:38 AM feature request #7718 (Closed): New Registration: Exclude irrelevant reference types from list of existing publications
- Problem 1
In einem WorkingSet (Buch) sind Dutzende Arten neu beschieben. Die Buchreferenz sollte ein mal vorhanden ... - 10:23 AM feature request #7717: Implement "continued" in TimePeriod UI
- for the expected behavior see also TimePeriodTest.testContinued and .testToStringTimePeriod
- 09:55 AM feature request #7717 (Closed): Implement "continued" in TimePeriod UI
- The continued flag should be alternative to the end date. As described in #7644 either the flag is set or we have an ...
- 10:22 AM Revision 0d330678 (cdmlib): ref #7644 some further fine tuning on setting CONTINUED/end date in TimePeriod and some cleanup
- 09:53 AM Revision 9e82319e (cdmlib): ref #7644 implement "continued" in TimePeriod, still missing for most of the formats in parser
- 09:51 AM Revision 52f57468 (cdm-dataportal): smaller changes in dna part of tree view
- 09:40 AM feature request #5882: option (as new default) to show full citation of accepted name below taxon page title
- I can not really see why this **follows** the last scrutiny ticket.
**This** ticket is about nomenclatural referen... - 09:34 AM Revision 5e7f22d8 (cdmlib): ref #7666 adding NARROW NO-BREAK after doubtful marker - adapting test
- 09:16 AM Revision b7f100e5 (cdmlib): ref #7666 adding NARROW NO-BREAK after doubtful marker
09/03/2018
- 10:41 PM Revision 8740b447 (cdmlib): next try to fix usage of wrong signature in TaxEditor CacheLoader test
- 10:38 PM Revision f51e5bb0 (cdmlib): next try to fix usage of wrong signature in TaxEditor CacheLoader test
- 09:51 PM Revision 2661d3b8 (cdmlib): try to fix usage of wrong signature in TaxEditor CacheLoader test
- 09:51 PM Revision 9e0814ef (cdmlib): test trim in Excel import column recognition
- 09:14 PM Revision 539b7820 (cdmlib-apps): cleanup
- 09:09 PM Revision 9c82d689 (cdmlib): cleanup
- 07:56 PM Revision 2a6e6815 (cdmlib-apps): cleanup
- 07:54 PM Revision 0b9d6dad (cdmlib): cleanup
- 03:14 PM feature request #7412 (Resolved): Allow editing supplemental data for DescriptiveDataSets
- Applied in changeset commit:taxeditor|0186b94d518629ffe1e2c7cb0c4ad0ee59605002.
- 03:13 PM Revision 0186b94d (taxeditor): fix #7412 Allow editing supplemental data for DescriptiveDataSets
- 02:45 PM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement
- Applied in changeset commit:taxeditor|472f773b8ac025f074ab28f5ef674533cda95717.
- 11:53 AM feature request #7715 (Closed): Description sources should be handled same as DescriptionElement
- Description sources are currently in supplemental data, DescriptionElement in Details view.
Both should be in Deta... - 02:44 PM Revision 472f773b (taxeditor): fix #7715 Show sources for descriptions in DetailsView
- 02:28 PM bug #3992 (In Progress): [CHECK] Use last scrutiny instead of sec reference
- Last scrutiny is now imported as sec references for those taxa having a last scrutiny information. Otherwise PTaxon.p...
- 02:24 PM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- The former citations suggestions (deriving from the last scrutiny references, PTaxon.lastScrutinyFk) are now imported...
- 01:33 PM Revision 29e233c6 (taxeditor): ref #7674 Add aggregated description directly to matrix after creation
- 01:32 PM task #7553 (Closed): move TypeDesignationSetManagerIT to cdmlib
- All tests on integration server where successful, so we can close this issue.
- 12:12 PM task #7553 (Resolved): move TypeDesignationSetManagerIT to cdmlib
- please review
- 12:11 PM Revision bcf6a056 (cdm-vaadin): ref #7553: delete TypeDesignationSetManagerIT from vaadin
- 12:03 PM feature request #1847 (Rejected): Apply description sources (references) for a DescriptionBase to all included description elements
- This is not primarily a taxeditor ticket therefore I close it but open a similar ticket for cdmlib services: #7716
- 12:01 PM bug #7716 (Closed): Apply description sources (references) for a DescriptionBase to all included description elements
- Currently webservices, exports, dataportal and aggregation algorithms do not include source of Description for Descri...
- 11:46 AM Revision b527f05c (taxeditor): ref #7674 Show complete taxon hierarchy
- 11:45 AM Revision 18c8b6f9 (taxeditor): ref #7674 Change label and style for default description
- 11:43 AM Revision 9c0f743e (cdmlib): ref #7674 Change label of default description
- 11:00 AM feature request #674: Turn off all concept-related functionality in the Editor in Preferences
- The idea is to simplify the UI for standard users
- 10:48 AM Revision 1e444ccf (cdmlib): ref #7553: move TypeDesignationSetmanagerTest to cdmlib
- 10:45 AM Revision 71571fbe (cdmlib-apps): ref #3992 adapt EuroMedActivator to last scrutiny changes
- 10:44 AM Revision 0d76bb7d (cdmlib-apps): add tests for occurrences sources with unwanted whitespaces
- 10:43 AM Revision d0c77267 (cdmlib-apps): ref #3992, ref #7713, ref #3990 add test for differing synonym relation references
- 10:42 AM Revision d19ddd46 (cdmlib-apps): cleanup
- 10:42 AM Revision e1d0f581 (cdmlib-apps): ref #3992, ref #7713, ref #3990 Atomize last scrutiny references
- 10:24 AM Revision 57a2a42f (taxeditor): ref #7674 Adjust tree path according to default taxon description
- 10:23 AM Revision aac70fda (cdmlib): ref #7674 Add equals() and hashCode() to RowWrapperDTO
- 07:25 AM Revision fca09e81 (cdmlib): ref #7674 Fix initialization problems
09/01/2018
- 06:29 PM feature request #7714 (Rejected): PhycoBank UI Restrictions for reference types
- Do not allow registrations under Reference types "Journal", "Printseries"
1. there are nomenclatural acts in artic... - 09:17 AM task #7713: Atomize last scrutiny references
- Find last scrutiny references not in use:
~~~
SELECT *
FROM Reference AS r
WHERE (RefId NOT IN
(SELECT L... - 08:26 AM task #7713: Atomize last scrutiny references
- ~~~
SELECT RefId, Notes, RefYear, RefCategoryFk, RefCache, NomRefCache, PreliminaryFlag, InRefFk, Title, NomTitleAb...
08/31/2018
- 11:20 PM task #7713 (In Progress): Atomize last scrutiny references
- 11:17 PM task #7713 (In Progress): Atomize last scrutiny references
- Last scrutiny references currently are all(?) flat and with protected cache. They should:
* ~~use inreferences (s... - 06:46 PM Revision 5cfd066c (cdm-dataportal): ref #7658 test case for Nepenthes abalata
- 06:18 PM feature request #7712 (Closed): PhycoBank UI Reference detail size
- Field "Reference detail" not long enough for standard entries,
e.g. 100, pl. 100, fig. 50-60 (see screen shot)
Prob... - 05:40 PM Revision 10e3087e (cdm-dataportal): ref #5753 adapting test to final decissions
- 05:16 PM Revision 41fb1151 (cdm-dataportal): more tests for misapplied names
- 04:34 PM Revision 0207cf2c (cdm-dataportal): updating selenium documentation by notes on compatible FF versions
- 02:29 PM Revision 523a1fad (cdm-vaadin): removing debug code line
- 01:06 PM Revision 90f19d04 (cdmlib): code cleanig
- 01:06 PM Revision ec8f5e38 (cdmlib): code cleanig
- 12:03 PM Revision 1dc37073 (taxeditor): ref #7674 Create default taxon description when adding specimens
- 12:02 PM Revision 041e26e2 (cdmlib): ref #7674 Create default taxon description when adding specimens
- 11:08 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- Ok from this future perspective it makes sense to decouple the loading of the references and the display of the MANs....
- 01:47 AM bug #7711 (Resolved): Bugs in media gallery
- * ~~when removing a Media from image gallery it is immediately saved but should be saved only after save command, ins...
- 12:33 AM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- I reverted using UUID as key in CdmEntityCacheKey because
* the eu.etaxonomy.cdm.cache.CdmTransientEntityCacher s... - 12:13 AM Revision 02d5f1f1 (taxeditor): cleanup and better use of generics
08/30/2018
- 11:52 PM Revision b0538039 (cdmlib): javadoc, cleanup and rename permanentCacher
- 11:49 PM Revision 3c50e62a (cdmlib): javadoc, cleanup and rename permanentCacher
- 11:48 PM Revision 59259b05 (cdm-vaadin): rename permanentCacher setter
- 11:34 PM Revision 2c8b687b (taxeditor): cleanup
- 11:22 PM Revision df75b75c (cdmlib): ref #7709 remove NPE
- 11:12 PM Revision 7b74ba3d (taxeditor): ref #7709 use id instead of uuid for CdmEntityCacheKey in ConversationalTransientEntityCacher
- 11:03 PM Revision 7ad7b0fa (cdmlib): ref #7709 cleanup CdmTransientEntityCacher
- 10:45 PM Revision 57e761cd (cdmlib): ref #7709 revert using uuid in CdmEntityCacheKey as key part
- 10:39 PM Revision 481d494a (cdmlib): cleanup
- 10:39 PM Revision 3c5c2395 (cdmlib): ref #7709 revert using uuid in CdmEntityCacheKey as
- 10:38 PM Revision 7b2e142b (taxeditor): ref #7709 use CdmBase constructor instead of class and id
- 10:38 PM Revision ed3f3e9a (taxeditor): cleanup
- 06:34 PM bug #7641 (Closed): Reference editor: Error when incerting several new authors into a new author team
- Test 1: #3, #6, 3.screenshot: fehlerhaftes Team komplett gelöscht und neu angelegt mit 2 Autoren aus der Liste und 2 ...
- 12:22 PM bug #7641: Reference editor: Error when incerting several new authors into a new author team
- Problem solved, please test.
- 12:20 PM bug #7641 (Resolved): Reference editor: Error when incerting several new authors into a new author team
- Applied in changeset commit:cdm-vaadin|fe3180d3be765b382f150b613f9936c711af9823.
- 06:11 PM feature request #7666 (In Progress): Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- Andreas Kohlbecker wrote:
> A disadvantage of the current implememtation of the taxon relationships webservice and D... - 05:08 PM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- A disadvantage of the current implememtation of the taxon relationships webservice and DTO when being used in the dat...
- 03:13 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Kohlbecker wrote:
> I forgot one thing:
>
> I am a bit frightend about the change you made in the cacher ... - 03:11 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- I discussed with Katja the handling of un-persisted objects. She also thinks that unpersisted objects should/are not ...
- 02:20 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- I forgot one thing:
I am a bit frightend about the change you made in the cacher as this is touching an essential ... - 02:17 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Müller wrote:
> Can you please check if this implementation solves your problems
My problem has been sol... - 02:12 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Müller wrote:
> Is this on purpose assigned to me?
>
You are the default assignee for cdmlib, as this t... - 02:10 PM bug #7709 (Feedback): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Can you please check if this implementation solves your problems and if you generally agree with the implementation?
... - 02:06 PM bug #7709 (Resolved): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Applied in changeset commit:cdmlib|67ff6af5f4a24c899385e13c671c8071d301f3e7.
- 01:39 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- With commit c5eb9820 I introduced more generics to the cacher (not yet 100% finished). Maybe we need to adapt externa...
- 01:33 PM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Is this on purpose assigned to me?
If yes, please give more info what is meant by PersonField. PersonField is not ... - 12:15 PM bug #7709 (Feedback): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
the following code would fail:
~~~java
newP1 = Person.NewInstance();
newP2 = Person.NewInstance();
pf1 = ...- 02:39 PM task #7553: move TypeDesignationSetManagerIT to cdmlib
- Hallo Katja, könnntest du dieses ticket übernehmen?
Andreas
- 02:18 PM Revision b1b42293 (cdmlib): ref #7709 javadoc
- 01:47 PM Revision 67ff6af5 (cdmlib): fix #7709 use uuid instead of id for CdmEntityCacheKey
- 01:37 PM Revision 6dc22ea5 (cdmlib): minor
- 01:37 PM Revision c5eb9820 (cdmlib): ref #7709 use more generics for CdmCacher (not completed yet)
- 01:30 PM bug #7710 (New): Server info is missing in case of RemoteAccessException
- The method `MessagingUtils.getContextInfo()` generates the info.
It seems like `CdmStore.getActiveCdmSource()` ret... - 01:25 PM Revision e0812cf2 (taxeditor): ref #7674 Enhance sorting of matrix rows
- - aggregated taxon description always on top
- specimen descriptions based on id - 12:39 PM Revision 9f10abf7 (taxeditor): Merge branch 'develop' into taxonDescription
- 12:36 PM Revision 25f9ee23 (cdmlib): Merge branch 'develop' into taxonDecription
- 12:21 PM Revision fa285af0 (cdm-vaadin): logging
- 12:20 PM Revision fe3180d3 (cdm-vaadin): fix #7641 ignoring unpersisted entities in ToOneRelatedEntityReloader
- 11:45 AM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
- All the UI issues have been solved.
The issue with the DerivedUnit with no FieldUnit is handled in #7704 - 11:24 AM feature request #5972: Prevent user from unwanted author and reference updates
- > we might also handle this via rights&roles but probably this is not adequate. Generally we allow those users to upd...
- 11:15 AM feature request #7708 (New): Unify handling of i18n title/representation in identifiable entities
- Copied from #7707:
Also there are IdentifiableEntity someclasses which have similar but not equal data structures ... - 11:13 AM Revision 269e42e0 (cdm-dataportal): ref #7686 Better way to check for empty string
- 11:13 AM feature request #7707 (New): Handle title / titleCache similar to Media in Classification and other classes
- In #7705 the best way to handle i18n-title and titleCache in the UI for classes with "simple titleCache" (titleCache ...
- 10:58 AM task #6864 (Duplicate): [DISCUSS] Title and titleCache in Media
- This is mostly a duplicate for #7705
- 10:48 AM feature request #7706 (Closed): Warning for reused Media is missing
- If Media is linked from multiple data the according warning is missing in the details view. This is critical.
===
... - 10:45 AM feature request #7705: Improve handling of title/titleCache and multi-language support for Media
- Katja, Patrick: do you think we can move this ticket to one of the current target versions (5.3 or 5.4)?
- 10:30 AM feature request #7705 (New): Improve handling of title/titleCache and multi-language support for Media
- We need i18n support for Media title and description if i18n support is switched on in preferences.
Also we to edi... - 10:24 AM Revision b511fb13 (cdm-dataportal): ref #7686 Better way to check for empty string
- 09:46 AM feature request #7704: Dataportal specimen table should be able to show DerivedUnits without a FieldUnit
- Patrick Plitzner wrote:
> This case can happen for type specimens that were created without a FieldUnit and just ass... - 08:04 AM feature request #7704 (Closed): Dataportal specimen table should be able to show DerivedUnits without a FieldUnit
- The current implementation of the specimen table works only on FieldUnits. Each row represents a FieldUnit and if ext...
- 07:57 AM bug #7703 (New): Multiple names cannot be shown in TypeDesignationDetailElement for specimens
- If a SpecimenTypeDesignation has more than one name set as `typifiedName` the DetailsView shows the following:
![]... - 07:49 AM Revision 6a660dc3 (cdm-dataportal): ref #7686 Remove citation label
- 07:20 AM Revision 0dd9be37 (cdm-dataportal): ref #7686 Fix check for empty string
- 06:53 AM Revision 76c5c9b7 (cdm-dataportal): ref #7686 Fix check for empty string
08/29/2018
- 06:50 PM bug #7702 (Resolved): corrupted hibernate session after previous error during save operation
- Applied in changeset commit:cdm-vaadin|7450d44bf31c73a41b69d836d1b87f0305784ad7.
- 06:11 PM bug #7702 (Closed): corrupted hibernate session after previous error during save operation
- This is the same problem as in #7559
the bug has not 100% been fixed be the changes made last time.
After this ... - 06:50 PM Revision 7450d44b (cdm-vaadin): fix #7702 always clearing session in finally clause
- 06:31 PM Revision 0f1cc6a3 (cdmlib): ref #7702 avoiding NPE in TargetEntityStates when pervious state is null
- 05:12 PM Revision 64688697 (cdmlib): ref #7686 Do not use null for keys in map (JSON error)
- 04:54 PM bug #7667 (Feedback): NoHttpResponseException for large queries in bulk editor
- I could not reproduce this anymore.
I tested on production and test server. - 04:47 PM Revision a5b11885 (cdm-dataportal): ref #7686 show info for unset type status
- 04:34 PM Revision cd175378 (cdmlib): ref #7686 Do not ignore types without type status
- 04:33 PM Revision 01371d61 (cdmlib): ref #7686 Use titleCache if no identifier can be found
- 04:28 PM bug #7528 (Closed): Allow changing the Registration status in the RegistrationWorkingsetEditor
- For curators all status are available but the selection of the available status is limited to guarantee a directed an...
- 04:09 PM Revision 4ad74423 (taxeditor): Use title cache as label when protected
- 04:08 PM Revision 2d6348e5 (cdm-dataportal): ref #7686 Add label to link to specimen page
- 03:24 PM Revision b317a252 (cdm-vaadin): fixing LIE related to RegistrationPopupEditor
- 03:20 PM feature request #7701 (New): Add link to typified name on specimen page of data portal
- "Anmerkung: Auf der Specimen Seite fehlt noch ein Link auf den typifizierten Namen, entsprechend den associated taxa."
- 03:19 PM bug #7686: Specimen title cache issues in data portal specimen table
- Andreas M.:
* Gibt der verwendete Webservice grundsätzlich nur Fieldunits oder werden auch DerivedUnits zurückgege... - 03:16 PM bug #7686: Specimen title cache issues in data portal specimen table
- Walter:
"Hierzu dann gleich auch noch zwei Anmerkungen:
Den Titel mit der ID ist unschön, zumal ja diese I... - 02:14 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- Andreas Müller wrote:
> On rem_conf_am (see stacktrace) and search for "A*"
I cannot reproduce this here either - 01:32 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- On rem_conf_am (see stacktrace) and search for "A*"
- 01:25 PM bug #7699 (Feedback): NPE in CdmTransientEntityCacher.getCacheElement()
- I cannot reproduce this. On which DB did you test? Does it always happen for any search on any DB?
- 11:59 AM bug #7699 (In Progress): NPE in CdmTransientEntityCacher.getCacheElement()
- NPE when searching for specimen (but probably not only then).
#9174 (duplicate) suggests that it happens when the ... - 01:51 PM bug #7500: Can't open both related accepted taxa of reused MAN
- Should I already review this ticket?
- 01:24 PM bug #7698 (Resolved): CCE when creating new datasource
- Applied in changeset commit:taxeditor|954982ef90bc8d6a36def59139fe9e96a2a7becc.
- 11:06 AM bug #7698 (Closed): CCE when creating new datasource
- ~~~
login : admin
editor version : 5.3.0.201808280657
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
schem... - 01:24 PM Revision 954982ef (taxeditor): fix #7698 Fix class cast exception
- 01:00 PM feature request #7700: use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
- see also #7695
the typedesignationSetManager already do the deduplication of specimen for one homotypical group an... - 01:00 PM feature request #7700 (Closed): use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
- 12:23 PM bug #7371: Deleting Polytomous Key throws NPE
- please review
- 12:23 PM bug #7371 (Resolved): Deleting Polytomous Key throws NPE
- Applied in changeset commit:taxeditor|de55078200c8f2e52f4784ed9aa6b1c6611ddb86.
- 12:23 PM Revision de550782 (taxeditor): fix #7371: fix NPE when deleting polytomous key
- 12:16 PM bug #4429 (Rejected): List of available software sites gets overwritten when updating product
- Not relevant anymore as update sites are hardcoded now.
- 09:21 AM feature request #7695 (In Progress): web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- I wonder if we should really require a single name uuid as obligatory input parameter. The semantics of the service s...
08/28/2018
- 04:05 PM Revision 27bddb2a (cdm-dataportal): php doc
- 04:00 PM bug #7692 (Worksforme): Empty "Specimens" section
- This is not a bug in the webservice. The Specimen in question actually has no FieldUnit.
So this is primarily a data... - 03:48 PM bug #7692: Empty "Specimens" section
- The actual problem is that the webservice `portal/taxon/fb987766-3ea5-45e0-a606-ca9b9d1253cf/associatedFieldUnits.jso...
- 03:08 PM bug #7692 (In Progress): Empty "Specimens" section
- The web service returns one specimen for this taxon:
http://api.cybertaxonomy.org/caryo_nepenthaceae/occurrence/by... - 03:38 PM Revision 035aa43d (cdm-dataportal): Merge branch 'develop' into hotfix/5.2.1
- 03:33 PM Revision 02f3768c (cdm-dataportal): ref #7692 avoiding php warning related to specimen table
- 03:01 PM bug #7691 (Resolved): Empty "Bibliography" section
- Applied in changeset commit:cdm-dataportal|850092a77002da04822cb23ce097e58b05ecbd5d.
- 03:01 PM Revision 850092a7 (cdm-dataportal): fix #7691 supressing bibliography when content is empty
- 02:31 PM bug #7500 (Resolved): Can't open both related accepted taxa of reused MAN
- Applied in changeset commit:taxeditor|c5cfeefde69828735b910d91075f0d7bdb42464f.
- 01:43 PM bug #7500 (In Progress): Can't open both related accepted taxa of reused MAN
- 02:31 PM Revision c5cfeefd (taxeditor): fix #7500: for misapplied names related to different taxa use chooseAcceptedTaxonDialog
- 01:52 PM bug #7693 (Duplicate): keys section can not be hidden in tabless taxon page
- this is a duplicate of #7294
- 07:39 AM bug #7693 (Duplicate): keys section can not be hidden in tabless taxon page
- When the tabless taxon page mode is enabled, the "Section/Tab visibility" setting for the "keys" section has no effect.
- 01:48 PM bug #7294 (Resolved): keys block can not be disabled in tabless taxon page
- Applied in changeset commit:cdm-dataportal|48a6d7e8e45c3140d00fc2b8ee5b66f472aa5a5a.
- 01:47 PM Revision 8a1b451e (cdm-dataportal): php doc
- 01:47 PM Revision 48a6d7e8 (cdm-dataportal): fix #7294 fixing broken tab/page-section disabling
- 01:39 PM task #6778: remove big objects from taxeditor git repository
- Andreas Kohlbecker wrote:
> Eine weitere Möglichkeit ist der Umzug auf Gitlab.com.
>
> "To celebrate today's good... - 10:57 AM task #6778: remove big objects from taxeditor git repository
- Eine weitere Möglichkeit ist der Umzug auf Gitlab.com.
"To celebrate today's good news we've permanently raised ou... - 01:38 PM Revision 9da648a0 (taxeditor): ref #7680: fix NPE for excluded notes
- 01:33 PM Revision e04a2b79 (taxeditor): ref #7680: unplaced, excluded and publish checkboxes should be available in NewTaxonnodeWizard
- 01:30 PM feature request #7680 (In Progress): Refactor TaxonNodeDetailElement
- the problems of not visible unplaced, excluded and publish checkboxes are fixed now. But to implement the NewTaxonNod...
- 12:43 PM bug #6289 (Closed): “Back to images” link as “Back to taxon page” when in table-less mode
- fixed and tested
- 12:41 PM bug #6289 (Resolved): “Back to images” link as “Back to taxon page” when in table-less mode
- Applied in changeset commit:cdm-dataportal|78bac306ef38b006fb5e622ce73f3ae699e6a10b.
- 12:41 PM Revision ff5d6ecb (cdm-dataportal): typo
- 12:41 PM Revision 78bac306 (cdm-dataportal): fix #6289 'back to taxon page' link label for media page
- 12:28 PM bug #7563 (Closed): requests with %2F in URL are rejected by apache
- 12:28 PM bug #7563 (Resolved): requests with %2F in URL are rejected by apache
- 12:25 PM Revision 5044311f (taxeditor): Set the bgColor of summary row to gray
- 11:52 AM bug #7576 (Closed): Set Publish Flag for Subtree Dialog - Problems with Progressmonitor
- Ok, the most severe problems seem to be fixed so far.
- 11:47 AM task #7596 (Closed): PhycoBank Portal - Formatting
- 11:35 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- Problems with current implementation of the new webservice:
1. `relations.representation_L10n` and `relations.repr... - 11:09 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- The TypeDesignationSetManager needs to be modified, so that it can be used for multiple usecases. By default it valid...
- 10:28 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- changing the controller endpoint to `/name/{uuid}/homotypicGroupTypeDesignationsDTO`, issue description updated.
- 09:10 AM feature request #7695 (Rejected): web service providing compact TypeDesignation representation for homotypic groups and individual taxa
The webservice path:
* ~~`typedesignations/byTaxon/{taxon_uuid}`, `typedesignations/byHomotypicalGroup/{group_...- 10:51 AM bug #7679 (Closed): NPE when creating root child in classification
- OK, seems to work now.
- 08:52 AM bug #7679: NPE when creating root child in classification
- Andreas Müller wrote:
> Looks like commit 46f913aa went only into the hotfix branch but needs to be committed to bot... - 10:45 AM Revision 0f793f18 (cdmlib): ref #7695 initial implementation of the /name/{uuid}/homotypicGroupTypeDesignationsDTO webservice - with problems
- 10:43 AM Revision e8daeef6 (taxeditor): minor
- 10:42 AM Revision df5966b8 (cdmlib): initial implementation of the /name/{uuid}/homotypicGroupTypeDesignationsDTO webservice - with problems
- 10:26 AM bug #7677 (Resolved): Nomenclatural Status is always set to nom illeg in details view
- 10:25 AM Revision 5e188bc9 (cdmlib): ref #7694: adapt typedesignation output for cdmlight export
- 09:20 AM feature request #7696 (Closed): use compact type representations in the synonymy as provided by the typedesignations/byTaxon/{taxon_uuid} service
* Source references should be shown as footnotes to the types
Note: see `compose_registation_dto($registration...- 09:10 AM feature request #7694 (Duplicate): cdmlight export output of types needs to be adapted
-
Relativ einfach sollte das (zumindest bei Nepenthes) für die nicht-atomisierten Typenzitate sein; da steht das Ori... - 08:51 AM Revision ff687253 (taxeditor): ref #7679 Evaluate DB prefs for publish flag
08/27/2018
- 10:25 PM Revision 65b0eef9 (taxeditor): ref #7677: set default type for nomenclatural status while creating new status
- 10:24 PM bug #7677: Nomenclatural Status is always set to nom illeg in details view
- yes you are right, it is better to create a new status with default type nom. illeg. then we do not have to set the s...
- 08:30 PM bug #7677 (Feedback): Nomenclatural Status is always set to nom illeg in details view
- The implementation is still not fully correct. If a NomenclaturalStatus WITHOUT type exists the type will be set to n...
- 07:38 PM bug #7681 (Closed): Update date field when editing parse field in TimePeriodElement
- Looks fine now.
Only, I would prefer to add some color to the parse field and/or the parse label. But this is not... - 07:33 PM bug #7679 (Feedback): NPE when creating root child in classification
- Looks like commit 46f913aa went only into the hotfix branch but needs to be committed to both branches.
Can't test... - 03:25 PM bug #7679 (Resolved): NPE when creating root child in classification
- 03:00 PM bug #7679 (Feedback): NPE when creating root child in classification
- The setting of the publish flag does not yet work in this case. It should either be "true" (but currently is "false")...
- 01:49 PM bug #7679 (Resolved): NPE when creating root child in classification
- Andreas Müller wrote:
> Can't we put this to resolved already?
As we already moved it to 5.2 because of the hotfi... - 01:30 PM bug #7679: NPE when creating root child in classification
- Can't we put this to resolved already?
- 06:08 PM bug #7689: Mutliple representation exception when creating taxon nodes
- We should try to fix this soon if it is reproducable
- 03:46 PM bug #7689 (Worksforme): Mutliple representation exception when creating taxon nodes
- Steps to reproduce:
1. Create a root taxon via right-click on classification
2. Directly create a second one on t... - 05:25 PM bug #7555 (Closed): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
- Andreas Müller wrote:
> The issue described in the description (as link) seems to be solved.
>
> The 2 later link... - 05:11 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
- Andreas Müller wrote:
> Maybe it is related that for Nepenthes alata no specimen appear: http://caryophyllales.org/n... - 05:08 PM bug #7692 (Worksforme): Empty "Specimens" section
- In some cases the tabless taxon page shows an empty "Specimens" section.
Example: http://caryophyllales.org/nepent... - 05:07 PM bug #7691 (Closed): Empty "Bibliography" section
- In some cases the tabless taxon page shows an empty "Bibliography" section.
Example: http://caryophyllales.org/nep... - 04:50 PM Revision e8d37b23 (taxeditor): ref #7674 Change bgColor of aggregated taxon description
- 04:11 PM bug #7690 (New): Adapt available typedesignation editors to name rank
- The RegistrationWorkingsetEditor offers a selection dialog for NameTypeDesignationEditor and SpecimenTypeDesignationE...
- 03:25 PM Revision 46f913aa (taxeditor): ref #7679 Evaluate DB prefs for publish flag
- 02:17 PM feature request #7688 (New): Agent (person/team/instituion) page
- To make agents (persons, teams, institutions) linkable and give an overview on all data available on an agent we need...
- 02:03 PM bug #7687 (Closed): NPE in TypeDesignationSetManager
- Fix looks ok!
- 01:57 PM bug #7687: NPE in TypeDesignationSetManager
- Hallo,
habe ich vorläufig gefixt: commit:73e4daa. Wird heute Nacht eingespielt.
Andreas K., schaust du nochma... - 01:55 PM bug #7687 (Closed): NPE in TypeDesignationSetManager
Arbeit mit Vaadin http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/8295ec6c...- 01:49 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
- Andreas Kohlbecker wrote:
>...
> Maybe the http://docs.geotools.org/ provide a suitable parser? Also a possibility,... - 01:36 PM task #7089: Rights and Roles Workshop 2017-11
- I think it is better to close this ticket and open a new "Open issues for Rights and Roles" ticket.
- 01:31 PM task #7089 (In Progress): Rights and Roles Workshop 2017-11
- It is linked from [[WorkshopRightsAndRoles2017-11]], therefore I think we could close it without losing anything, BUT...
- 12:33 PM task #7089: Rights and Roles Workshop 2017-11
- Do we want to keep this ticket open?
- 01:31 PM bug #7686 (Closed): Specimen title cache issues in data portal specimen table
- 
Walter:
* Der Name nach Holotype of wird doppelt ausgegeben.
* Vor dem Link zum Herbarb... - 01:28 PM feature request #7685 (Closed): Add Selenium tests for specimen table in data portal
- * add test data to 160.45.63.201/cdm_integration_reference
* create new dump which needs to be stored in edit-integr... - 01:22 PM bug #7528 (In Progress): Allow changing the Registration status in the RegistrationWorkingsetEditor
- This issue should not be closed as duplicate as it contains the references to the code changes.
I will rather clo... - 01:20 PM feature request #7618 (Duplicate): PhycoBank Curator rights
- closing this issue as duplicate of #7528 the discussion on the status `rejected` has moved to #7684
- 01:01 PM bug #7676 (Feedback): Suchfunktionalität in Registration UI Dateneingabe
- In der Ticketbeschreibung sind verschiedene Probleme beschrieben.
1. Suche nach der Registrierung (100267) für den... - 12:37 PM bug #6247 (Rejected): Check if concept relationships are correctly implemented in Gefäßpflanzenimport B
- As the redlists are not using the platform anymore we do not need the import anymore.
- 12:09 PM bug #7683 (In Progress): external links Audit table should allow uuid to be null
- 12:09 PM bug #7683: external links Audit table should allow uuid to be null
- This is generally the case already when databases are created via hibernate CREATE (see e.g. edit-test.cdm_test_eurom...
- 11:32 AM bug #7683 (Closed): external links Audit table should allow uuid to be null
- when deleting an external link an com.mysql.jdbc.exceptions.jdbc4.MySQLIntegrityConstraintViolationException: Column ...
- 11:56 AM Revision 036b1573 (taxeditor): move the parse field at the top of datedetails and add tooltip
- 11:49 AM bug #7682 (In Progress): Point.precision must not be 0 by default
- Already removed default value in class, still need update script to remove all 0 values from existing data
- 09:48 AM bug #7682 (Closed): Point.precision must not be 0 by default
- It seems as if there is a problem with the embedded type Point. Whenever long and lat are set the radius is always se...
- 11:46 AM Revision e6a65453 (cdmlib): ref# 7682 remove default value for Point.precision
- 11:32 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
- the fields are available now, but the AUD table definition needs to be updated, the uuid should be allowed to be null...
- 10:46 AM Revision 9ad45667 (taxeditor): ref #7415: add external link section to original source part
- 10:37 AM Revision 414b03e6 (taxeditor): ref #7415: add external link section to original source part
- 09:36 AM Revision 8be7bd71 (taxeditor): ref #7674 Remove unused class
- 09:35 AM Revision 1cc08dc4 (taxeditor): ref #7674 Disable cell editor for aggregated taxon descriptions
- 09:12 AM Revision d4aefb3a (taxeditor): ref #7674 Do not aggregate taxon descriptions
- 09:09 AM Revision 61473b5a (taxeditor): ref #7674 Show taxon descriptions as rows in matrix
08/24/2018
- 12:39 PM Revision a7818829 (taxeditor): fix #7681 Update date field when editing parse field
- 12:39 PM bug #7681 (Resolved): Update date field when editing parse field in TimePeriodElement
- Applied in changeset commit:taxeditor|9be67535c6cfd81916477c02af59ea94dcf4487b.
- 12:38 PM bug #7681 (Closed): Update date field when editing parse field in TimePeriodElement
- The date fields are only updated when a correct date could be parsed.
This could be misleading if i.e. you clear t... - 12:38 PM Revision 9be67535 (taxeditor): fix #7681 Update date field when editing parse field
- 11:52 AM Revision 17acac26 (taxeditor): ref #7679 Change order of UI elements
- 11:35 AM Revision 22daad3e (taxeditor): ref #7679 Change order of UI elements
- 11:32 AM Revision 9e01ec16 (taxeditor): ref #7679 Temporary hotfix for NPE in taxon node wizard
- 11:26 AM Revision 9d74201a (taxeditor): ref #7679 Temporary hotfix for NPE in taxon node wizard
- 11:24 AM Revision 39b63571 (taxeditor): Updated version in pom / project files to taxeditor version : 5.2.2 and cdmlib version : 5.2.0
- 11:13 AM Revision eabf0e1d (cdmlib): ref #7075 fix bugs in MediaExcelImport
- 10:28 AM bug #7679: NPE when creating root child in classification
- I created a new ticket for the redesign -> #7680
- 10:26 AM bug #7679: NPE when creating root child in classification
- While investigating this issue I realized that the *NewTaxonNodeWizard* does not work like all the other "new" wizard...
- 08:36 AM bug #7679: NPE when creating root child in classification
- When entering data in "Detail" an exception is thrown with every key stroke
~~~
login : admin
editor version : 5... - 10:27 AM feature request #7680 (Closed): Refactor TaxonNodeDetailElement
- Copied from #7679:
While investigating this issue I realized that the *NewTaxonNodeWizard* does not work like all ...
08/23/2018
- 05:28 PM bug #7679 (In Progress): NPE when creating root child in classification
- 05:28 PM bug #7679 (Closed): NPE when creating root child in classification
- When calling "new" on classification, the dialog does not show the "publish" checkbox for some reason. Also the unpla...
- 05:11 PM Revision 737221ab (cdmlib): ref #7674 Fix lazy init exception
- 04:09 PM bug #7677: Nomenclatural Status is always set to nom illeg in details view
- ~~~ sql
select distinct name.id nameId, name.fullTitleCache fullTitle, defNow.titleCache currentStatus, a.date, ns.r... - 11:39 AM bug #7677: Nomenclatural Status is always set to nom illeg in details view
- This is the statement to get all nomenclatural status changes for update and create and which are changed to nom. ill...
- 10:10 AM bug #7677 (Resolved): Nomenclatural Status is always set to nom illeg in details view
- 10:09 AM bug #7677 (Closed): Nomenclatural Status is always set to nom illeg in details view
- Hallo,
es scheint so, dass die default-Einstellung für Nomenclatural Status als "nom. illeg." einen gefährlichen N... - 11:26 AM feature request #7678 (New): Show exception message if editor update fails
- For example IOException when the hard drive is full
~~~
java.io.IOException: Es steht nicht genug Speicherplatz a... - 11:16 AM Revision 3da4a5e6 (taxeditor): ref #7674 Fix saving of aggregated description
- 11:15 AM Revision fcd9dc61 (taxeditor): ref #7674 Fix class cas exceptions
- 11:06 AM Revision 7c245320 (taxeditor): Fix possible widget disposed exception
- 10:59 AM Revision 6867fa49 (cdmlib): ref #7674 Make aggregate service readOnly=false
- 10:48 AM Revision e4f8b74d (taxeditor): fix bug in nomenclatural status details view
- 09:48 AM Revision be0fbb67 (cdmlib): ref #7674 Change method name
- 09:37 AM Revision d1975e7b (taxeditor): Merge branch 'hotfix/5.2.1'
- 09:12 AM Revision 451f02f6 (taxeditor): fix bug in nomenclatural status element
- 08:52 AM Revision cf7bb147 (taxeditor): Updated version in pom / project files to taxeditor version : 5.2.1 and cdmlib version : 5.2.0
08/22/2018
- 05:50 PM Revision e15dfd39 (taxeditor): ref #7674 Adapt to cdmlib change(Add aggregated description to data set)
- 05:49 PM Revision 32d09233 (cdmlib): ref #7674 Add aggregated description to data set
- 04:31 PM bug #7672: use taxonRelationship formatter for label in referencing objects view
- Maybe we should first consider moving formatting to server side as it is faster and as we may also make formatting de...
- 02:31 PM bug #7672 (New): use taxonRelationship formatter for label in referencing objects view
- Die Formatierer der Konzeptrelationen im RefObjects View scheinen die Relationen noch falsch herum zu beschreiben. Au...
- 03:41 PM bug #7676: Suchfunktionalität in Registration UI Dateneingabe
- Das Phänomen ist schlecht reproduzierbar.
Bevor ich das Ticket geschrieben habe, hatte ich mich als admin aus und wi... - 03:24 PM bug #7676 (Closed): Suchfunktionalität in Registration UI Dateneingabe
- Referenz lt. Datenbankausgabe:
Moestrup, Ø. & Calado, A.J., Dinophyceae.Süßwasserflora von Mitteleuropa, 6: [I]-IX, ... - 03:22 PM Revision 4bd6b5fc (cdmlib): ref #7674 Refactor RowWrapper
- - add sub classes fort specimen and taxon row wrapper
- add service methods - 02:52 PM Revision 6a776dc5 (cdmlib): ref #7674 Refactor RowWrapper
- - code cleanup
- 02:50 PM feature request #7675 (Rejected): Make columns with default values togglable
- Columns that have default values defined in a taxon description should have a function to toggle their visibility
- 02:47 PM feature request #7674 (Closed): Show taxon descriptions in character matrix editor
- There are two types of taxon descriptions:
1. description from literature
1. description for default values
Th... - 02:32 PM task #7673 (New): review ABCD import
- please review the ABCD import for alga terra new
- 02:22 PM bug #3535: Automatically update descriptive view if content changed
- please review
- 02:22 PM bug #3535 (Resolved): Automatically update descriptive view if content changed
- Applied in changeset commit:taxeditor|c799a32e590620a2719f8f4edfa30604d5a23306.
- 02:20 PM Revision c799a32e (taxeditor): fix #3535: update name editor after moving descriptions from one taxon to another taxon
- 02:16 PM Revision b1cce780 (taxeditor): Merge branch 'develop' into taxonDescription
- 02:15 PM Revision 3158af23 (taxeditor): Fix possible NPE
- 01:13 PM bug #7484 (Resolved): Protected titleCache handling not correct in Reference detail view
- Applied in changeset commit:taxeditor|0656435dc061bddf14ebdbdad6b3868f6e0f2eb3.
- 01:11 PM Revision 0656435d (taxeditor): fix #7484: fix correct colouring of fields for protected titlecache and abbrev titlecache
- 12:35 PM bug #7665: ConcurrentModificationException when closing Editor
- Patrick Plitzner wrote:
> Applied in changeset commit:taxeditor|c7b20ed3c866508182a3d5d1b44b57fc1244b6f8.
Not sur... - 12:25 PM bug #7665 (Resolved): ConcurrentModificationException when closing Editor
- Applied in changeset commit:taxeditor|c7b20ed3c866508182a3d5d1b44b57fc1244b6f8.
- 12:24 PM bug #7665: ConcurrentModificationException when closing Editor
- I could never reproduce this problem, so for reviewing we could just wait test for a while and see if it happens again.
- 11:30 AM bug #7665 (In Progress): ConcurrentModificationException when closing Editor
- use iterator.remove()
- 12:25 PM Revision c7b20ed3 (taxeditor): fix #7665 Use iterator to avoid ConcurrentModificationException
- 12:24 PM Revision 2bc033c4 (taxeditor): Remove unused method
- 12:21 PM bug #7352 (Closed): review propertyPaths in editor
- 12:07 PM feature request #6565 (Closed): [MASTER] Eclipse 4 Migration
- 12:05 PM feature request #6932 (Closed): Migrate bulk editor
- Close this ticket as bulk editor has new developments like NAT tables and parallel loading anyways.
- 12:01 PM bug #4465 (Worksforme): Handle Drag and Drop for Synonyms
- this issue is fixed, follow up ticket with remaining problems is #7671
- 11:59 AM bug #7064 (Closed): NameEditor remaining issues
- 11:56 AM bug #7064: NameEditor remaining issues
- Created new tickets for open issues
- 11:57 AM bug #7671 (New): Drag & Drop for synonyms has refresh problems
- when drag & drop synonym from an existing homotypic group or into an existing homotypic group the refresh of the name...
- 11:49 AM feature request #7670 (New): [DISCUSS] Do we need right click "save" menu
- ... or is icon + Str/S enough.
Ask users.
It was like this in Name Editor before e4. Either we should have it e... - 11:49 AM Revision f8019c2d (taxeditor): ref #7657 Consider taxon node filter when loading data
- 11:48 AM Revision aa5ef8d0 (cdmlib): ref #7657 code refactoring
- 11:34 AM feature request #7015 (New): Migrate recent menu item
- The recent menu should preferably show only recent items from the currently connected database
- 09:36 AM bug #7576 (Resolved): Set Publish Flag for Subtree Dialog - Problems with Progressmonitor
- The problem of lost connection between server and progress monitor dialog is fixed, the percentage display is fixed t...
- 08:42 AM feature request #7657 (Rejected): Use HQL query for loading character matrix
- issue should be handled in #7589
- 08:41 AM feature request #7589: Performance, UX and stability patches for CharacterMatrix
- commit:cdmlib|d9c066f5584fd689621509488a82c6649abb84d4
- 08:40 AM Revision d9c066f5 (cdmlib): ref #7657 Increase loading speed for matrix
08/21/2018
- 05:59 PM Revision ee6addb8 (cdmlib): ref #7657 Load description for matrix via HQL (still broken)
- 04:06 PM Revision 73e4daae (cdmlib): fix NPE in TypeDesignationSetManager.stringify(TypeDesignationSetManager.java:522)
- 03:41 PM bug #6850 (Feedback): NPE when clearing label of "kind of" term in TermEditor
- @Andreas: I could not reproduce this behavior. Maybe this was fixed a while ago. Can you please test and close this t...
- 03:29 PM bug #6742 (Feedback): IAE when using "Link with taxon selection" in Specimen-Editor
- @Andreas: I could not reproduce this behavior. Maybe this was fixed a while ago. Can you please test and close this t...
- 03:14 PM feature request #6475 (Resolved): Make specimen tree editor collapsable and expandable
- 03:13 PM Revision 5d8c225b (taxeditor): ref #6475 Make specimen tree editor collapsable and expandable
- 01:50 PM feature request #5021 (Rejected): TreeNodeDropAdapterAssistant should use RemotingMoveTaxonNodeHandler
- I think this is obsolete because the functionality is now in the service method which is used by both classes.
- 12:46 PM bug #4573 (Resolved): Handle duplicate username, group or grantedAuthority correctly
- please review
- 12:33 PM bug #4573: Handle duplicate username, group or grantedAuthority correctly
- now for users and groups there is a check for identical names and a message that the user/group already exists, pops up.
- 12:44 PM Revision bb5d8aed (taxeditor): ref #4573: handle duplicate grantedAuthority in editor
- 12:25 PM Revision 9122a3ce (taxeditor): ref #4573: handle duplicate user and group name in editor
- 11:25 AM bug #7638: problem with media data missing meta data
The media file above does not exist, clicking on the link results in:
Sorry, no connection ...
Sorry, no conn...- 09:46 AM bug #7145: NPE when trying to move a synonym into another homotypic group
- this exception appeared again for Sabine:
Hallo,
bei Sabulina afghanica kann ich das Synonym nicht von hetero- ... - 09:44 AM bug #7668 (Closed): NPE when changing author
- mail of Sabine:
Hallo,
beim Versuch bei der Art Arenaria brachypetala den Autor zu ändern (Auswahl eines andere... - 08:31 AM Revision 4133992a (cdmlib-apps): adapt AlgaTerraTypeImport to new specimen facade signature for kind-of-unit
- 08:30 AM Revision b557cf20 (cdmlib-apps): rename IAPT import test package (same name as import package itself)
- 08:29 AM Revision 5bfe953d (cdmlib-apps): ref #7664 adapt app-import to typified return types
- 08:05 AM bug #7606: compact display of CDM Point data
- Maybe we can leave it as an expandable element which is by default not expanded.
This allows to also show the deci...
08/20/2018
- 06:06 PM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- WGB: Der Buchlink verweist auf den Protolog von N. blancoi Blume – der hat ja aber gerade nichts mit dieser Namensanw...
- 11:59 AM feature request #7666 (In Progress): Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- copied from #6682
for requirements see #6682
* correct symbols for relationships in databases
* EN_DASH... - 05:40 PM feature request #6682: Formatter and DTO for taxon relationships (e.g. misapplied names)
- AM: … und noch etwas: bei der „sensu“ Referenz ist ja vermutlich die Jahreszahl bewusst weggelassen um es an die gäng...
- 05:30 PM feature request #6682: Formatter and DTO for taxon relationships (e.g. misapplied names)
- Sensu references and relation references should be formatted similarly:
WGB: Wenn die exakte Referenz über die Bib... - 12:00 PM feature request #6682 (Closed): Formatter and DTO for taxon relationships (e.g. misapplied names)
- close this ticket as released in 5.2, open issues moved to #7666
- 03:38 PM Revision 18983f12 (cdm-server): Add Releases link
- 02:20 PM bug #7528 (Duplicate): Allow changing the Registration status in the RegistrationWorkingsetEditor
- 02:18 PM feature request #7572 (Closed): SpecimenTypeDesignationEditor: Collection combobox shows collection.code and collection.institution
- Review: institutions as well as codes can be searched. Seem to work.
- 01:57 PM feature request #7611 (Closed): media types with media uris are clickable
- Es funktioniert (ist allerdings nicht besonders auffällig).
Beispiel in der Ausgabe http://test.e-taxonomy.eu/datapo... - 01:43 PM feature request #7569 (Closed): SpecimenTypeDesignationEditor: Typedesignations should be ordered
- Main usecases checked:
Holotype isotypes
Holotype paratypes
Type Epitype, Type lectotype
Order as requested, ti... - 01:39 PM bug #7667: NoHttpResponseException for large queries in bulk editor
- we should handle this with high priority as it may influence server performance
- 01:32 PM bug #7667 (Feedback): NoHttpResponseException for large queries in bulk editor
- Copied from #6321:
AM: "when testing a couple of times I got an EagerLoadingException caused by an NoHttpResponseE... - 01:35 PM bug #7557 (Closed): TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a sub popup editor
- 01:33 PM bug #7629 (Closed): creating a typification only registration should not be possible if the names protologue is in the current workingset
- Tested and works.
- 01:32 PM feature request #6321 (Closed): Implement parallel loading + progress bar for loading objects into the bulk editor
- Andreas Müller wrote:
> Generally I wonder how to continue here. As mentioned I still get HTTPNoResponse issues on "... - 01:28 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
- Maybe it is related that for Nepenthes alata no specimen appear: http://caryophyllales.org/nepenthaceae/cdm_dataporta...
- 12:38 PM bug #7555 (Feedback): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
- The issue described in the description (as link) seems to be solved.
The 2 later links do return "Required UUID pa... - 01:27 PM feature request #7594: RegistrationWorkingsetEditor click on new serveral times
- Issue not resolved. May be a problem of the slow test server.
- 01:19 PM feature request #7643: cdmlight export: for bibliographic short citation use the freetext of the date as default
- As mentioned in #note-2 this implementation is critical. I left a note in #7644 to maybe revert once #7644 is impleme...
- 01:03 PM feature request #7643 (Closed): cdmlight export: for bibliographic short citation use the freetext of the date as default
- 01:13 PM Revision c88ae0d7 (cdmlib): fix NPE in CdmLightExport
- 01:11 PM bug #7566 (Closed): TeamOrPersonField: some Persons can not be selected
- 12:48 PM Revision 5c5d1f1f (cdmlib): ref #7666 adapt test for new doubtful handling in formatter
- 12:34 PM bug #7647 (Closed): accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in details view
- The example was Nepenthes hispida and it is displayed correctly as accepted name now.
- 12:29 PM bug #7647 (Feedback): accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in details view
- Katja, can you check with Walters example again in production. Unfortunately it is not mentioned in the ticket. If it...
- 11:52 AM Revision 2469bc9b (cdmlib): cleanup
- 11:52 AM Revision 9c8dc025 (cdmlib): ref #6682 split doubtful in rel doubtful and taxon doubtful + use full authorshipCache for MAN non-authors
- 10:34 AM feature request #7071 (New): Reenable restore functionality
- 10:11 AM bug #7665 (Closed): ConcurrentModificationException when closing Editor
- When closing editor a ConcurrentModificationException occurs:
~~~ text
login : w.berendsohn
editor version : 5.2... - 10:10 AM Revision 04e5e29a (taxeditor): minor refactoring
- 09:18 AM Revision adacf42f (taxeditor): Fix NPE for editing newly added feature nodes
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