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task #7338

Validate taxon name against the higher taxon name

Added by Andreas Kohlbecker 9 months ago. Updated 5 months ago.

Status:
Closed
Priority:
Highest
Category:
cdm-vaadin
Target version:
Start date:
03/28/2018
Due date:
% Done:

100%

Severity:
normal
Tags:

Description

Beim Namens-Editor für Arten oder infraspezifische Taxa ist das nächst-höhere Taxon meist schon im System. Einfachster Fall bei Arten. Die Gattung ist entweder meist im System oder im aktuellen Working-Set gerade eingegeben.

  1. Lösungsmöglichkeit wäre ein Verfahren wie bei 1a für references, das ich mal vorgeschlagen hatte.
  2. Lösungsmöglichkeit wäre ein Orthographie-Check des Gattungsnamens.

Notwendigkeit einer Lösung: Es ist möglich unterhalb einer richtig-geschriebenen Gattung ein Epitheton mit falsch geschriebener Gattung zu registrieren. Das ist nicht trivial und kommt in Publikationen immer wieder vor, also kann das auch in unserer Datenbank vorkommen.

Im Prinzip gilt das gleiche bei infraspezifischen Epitheta, die einem Artepitheton zugeordnet werden. Das ist nicht super-dringend, würde aber die Konsitenz der Daten erhöhen.

picture445-1.png View (37 KB) Andreas Kohlbecker, 03/28/2018 04:31 PM


Related issues

Related to Edit - task #7497: Dokument and add guides and hints to the UI New 06/19/2018
Related to Edit - bug #7524: TaxonNameEditor blocks entering new names for genera Closed 06/28/2018
Blocked by Edit - bug #7467: taxon name parts lookup method with support for wildcard searches Closed 06/11/2018

Associated revisions

Revision 7adc925d (diff)
Added by Andreas Kohlbecker 6 months ago

ref #7338 TaxonNameEditor mode VALIDATE_AGAINST_HIGHER_NAME_PART implemented for genusOrUninomial

Revision b3f62829 (diff)
Added by Andreas Kohlbecker 6 months ago

ref #7338 mode VALIDATE_AGAINST_HIGHER_NAME_PART implemented for specificEpithet

Revision ce88dd79 (diff)
Added by Andreas Kohlbecker 6 months ago

ref #7338 mode VALIDATE_AGAINST_HIGHER_NAME_PART implemented for specificEpithet - fixing ConcurrentModification problem

Revision 9607cc97 (diff)
Added by Andreas Kohlbecker 6 months ago

ref #7338 mode VALIDATE_AGAINST_HIGHER_NAME_PART implemented for specificEpithet - fixing field refresh problems on genus change

Revision 7fa05bfe (diff)
Added by Andreas Kohlbecker 6 months ago

ref #7338 fixing bugs related to VALIDATE_AGAINST_HIGHER_NAME_PART mode:
- NPE when switching to intraSpecific rank with two name editors open
- ConncurrentModification problem when canceling editor

History

#1 Updated by Andreas Kohlbecker 9 months ago

#2 Updated by Andreas Kohlbecker 8 months ago

  • Priority changed from Priority11 to Highest
  • Target version changed from cdmlib - Next Major Release to Release 5.1

#3 Updated by Andreas Kohlbecker 6 months ago

  • % Done changed from 0 to 30

#4 Updated by Andreas Kohlbecker 6 months ago

  • Blocked by bug #7467: taxon name parts lookup method with support for wildcard searches added

#5 Updated by Andreas Kohlbecker 6 months ago

  • Status changed from New to Resolved
  • % Done changed from 30 to 50

@Henning This is now fully implemented. You can start testing this feature.

#6 Updated by Andreas Kohlbecker 6 months ago

  • Assignee changed from Andreas Kohlbecker to Wolf-Henning Kusber

#7 Updated by Wolf-Henning Kusber 6 months ago

angetestet mit Gattungsauswahl: funktioniert und sehr hilfreich.

#8 Updated by Andreas Kohlbecker 6 months ago

Du testest das sicherlich auch noch mit Subpecies oder einem anderen intrapezifischen Rang?. Dafür habe ich die Validierung auch implementiert.

Wir sollten auch darüber nachdenken, ob es sinnvoll ist die TaxonRealationen zu den Namen höheren Rangs herzustellen, so wie in #6173 beschlossen. Im Falle dieser automatische hergestellten Relationen würde die Sec Referenz dann die der nomenklatorischen Referenz sein.

Andreas

#9 Updated by Wolf-Henning Kusber 6 months ago

New subsp./form: genus & species in drop down.
(New subp./form + basionym species ok)
New subsp./form + basionym = subsp./form -> ERROR

#10 Updated by Wolf-Henning Kusber 6 months ago

automatic link to higher taxon up to genus possible.
Problem: 4 part infraspecific names:
Genus species-epithet [infraspecific-epithet, e.g. subsp., var.] final-epithet
The final epithet can only be linked automatically to the species epithet, which is part of the scientific name.
For ranks higher than the genus, no automatic higher rank can be linked to, because the taxon tree may offer two potential parents e.g. Mediophyceae OR Fragilariophyceae.

#11 Updated by Wolf-Henning Kusber 6 months ago

  • Assignee changed from Wolf-Henning Kusber to Andreas Kohlbecker

#12 Updated by Andreas Kohlbecker 6 months ago

  • Assignee changed from Andreas Kohlbecker to Wolf-Henning Kusber

please test again, as the test server was not up to date when you did the last
test.

#13 Updated by Wolf-Henning Kusber 6 months ago

Fehler in #10 behoben, aber...

#14 Updated by Andreas Kohlbecker 6 months ago

Wolf-Henning Kusber wrote:

Fehler in #10 behoben, aber... #7497#note-3

#15 Updated by Andreas Kohlbecker 6 months ago

  • Related to task #7497: Dokument and add guides and hints to the UI added

#16 Updated by Andreas Kohlbecker 6 months ago

  • Related to bug #7524: TaxonNameEditor blocks entering new names for genera added

#17 Updated by Andreas Kohlbecker 5 months ago

  • Status changed from Resolved to Closed
  • Assignee changed from Wolf-Henning Kusber to Andreas Kohlbecker
  • % Done changed from 50 to 100

works as expeceted

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