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From 06/20/2019 to 07/19/2019

07/19/2019

11:28 PM Revision 3af337bb (cdmlib): ref #6794 finalize FeatureTreeMover (update treeindex)
Andreas Müller
11:19 PM Revision d621df66 (cdmlib): minor
Andreas Müller
10:24 PM Revision 74d92b60 (cdmlib): ref #6794 minor adaptations of tests
Andreas Müller
09:13 PM Revision 40b05355 (cdmlib): ref #6794 remove duplicate TermRelationshipType in test/hibernate.cfg.xml
Andreas Müller
09:03 PM Revision ab5b84ab (cdmlib): ref #6794 remove FeatureTree from hibernate.cfg
Andreas Müller
08:57 PM Revision 0774bb03 (cdmlib): ref #6794 remove FeatureTree class
Andreas Müller
08:45 PM Revision 3048fbc9 (cdmlib): ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
ref #6794 add TermRelation and TermRelationBase Andreas Müller
08:42 PM Revision 17ad77a7 (cdmlib): ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller
08:42 PM Revision b996fc8c (cdmlib): cleanup and ref #6794 rename TermTreeDaoImpl
Andreas Müller
08:42 PM Revision 645aca37 (cdmlib): ref #6794 add TermCollection and subclasses including TermTree
Andreas Müller
08:42 PM Revision 12740fe1 (cdmlib): ref #6794 change FeatureTree to TermTree
Andreas Müller
08:42 PM Revision 0d80c92f (cdmlib): ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller
08:41 PM Revision e793a739 (cdmlib): ref #6794 update some imports to model changes and add ITermTree
Andreas Müller
06:14 PM Revision cf862eed (cdmlib): ref #6794 FeatureTreeMover first implementation (not yet ready)
Andreas Müller
06:14 PM Revision b153def6 (cdmlib): minor
Andreas Müller
06:14 PM Revision a2533432 (cdmlib): ref #6794 change schema version and add missing attributes to updateScript
Andreas Müller
06:14 PM Revision 0d79c535 (cdmlib): ref #6794 remove references to TermVocabulary.iterator()
Andreas Müller
06:14 PM Revision b61431ee (cdmlib): ref #8336 ignore FeatureTest
Andreas Müller
06:14 PM Revision 94907e20 (cdmlib): ref #6794 adapt TermCollection test data to boolean values in TermCollection
Andreas Müller
06:14 PM Revision 5ed46cc2 (cdmlib): add SchemaUpdater_55_58
Andreas Müller
06:14 PM Revision def33852 (cdmlib): ref #6794 add TermCollection and subclasses including TermTree
Andreas Müller
06:14 PM Revision b72678a6 (cdmlib): ref #6794 change FeatureTree to TermTree
Andreas Müller
06:14 PM Revision ec978653 (cdmlib): ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller
06:14 PM Revision 18dfe77e (cdmlib): ref #6794 move term relations down to TermCollection
Andreas Müller
06:14 PM Revision 502547d1 (cdmlib): ref #6794 fix FeatureNodeServiceImplTest
Andreas Müller
06:14 PM Revision 810bbc08 (cdmlib): revert ClearDBDataSet to BlankDataSet to avoid foreign key problems during test data creation in SDDImportTest
Andreas Müller
06:14 PM Revision 4e5c4e73 (cdmlib): cleanup and ref #6794 rename TermTreeDaoImpl
Andreas Müller
06:14 PM Revision c27ce9cc (cdmlib): ref #6794 update script for graph_id and root_id
Andreas Müller
06:14 PM Revision 0761f817 (cdmlib): replace BlankDataSet.xml by ClearDBDataSet.xml
Andreas Müller
06:14 PM Revision 0d603043 (cdmlib): cleanup
Andreas Müller
06:14 PM Revision 1cc29785 (cdmlib): ref #6794 adjust hibernate configuration to new TermCollection and adjust test data
Andreas Müller
06:14 PM Revision 11df83d8 (cdmlib): ref #6794 add TermCollection and subclasses including TermTree
Andreas Müller
06:14 PM Revision b3340748 (cdmlib): ref #6794 change FeatureTree to TermTree
Andreas Müller
06:14 PM Revision 4b1a00be (cdmlib): ref #6794 update script for name changes in FeatureNode and TermVocabulary
Andreas Müller
06:13 PM Revision 2a933a18 (cdmlib): adapt SchemaUpdater to v5.5.1
Andreas Müller
06:13 PM Revision 3c06156c (cdmlib): ref #6794 rename TermVocabulary table to TermCollection and remaining rename FeatureNode -> TermTreeNode
Andreas Müller
06:13 PM Revision 3de5dbd5 (cdmlib): update service/dataset.xsd location
Andreas Müller
06:13 PM Revision 951c829f (cdmlib): ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller
06:13 PM Revision 1c313fd1 (cdmlib): ref #6794 add TermRelation and TermRelationBase
Andreas Müller
06:13 PM Revision aa929473 (cdmlib): ref #6794 add term relation type to TermType and fix TermRelationType class
Andreas Müller
06:13 PM Revision 6645143a (cdmlib): ref #6794 adapt TermsDataSet-with_auditing_info in some packages after merge problem solved
Andreas Müller
06:13 PM Revision 28fc4fe7 (cdmlib): ref #8128 comment changes temporarily to make them compile
Andreas Müller
06:13 PM Revision cafaa5dd (cdmlib): ref #6794 add TermRelationshipType to test data
Andreas Müller
06:13 PM Revision 7c4fffcd (cdmlib): ref #6794 add TermRelationshipType
Andreas Müller
06:13 PM Revision 2f8559af (cdmlib): cleanup
Andreas Müller
06:13 PM Revision cf792057 (cdmlib): ref #7514 adapt MAN symbol to portal tests
Andreas Müller
06:13 PM Revision ae1cff7e (cdmlib): preparation for Feature.supportedClasses
Andreas Müller
06:13 PM Revision c220794b (cdmlib): ref #7514 update misapplied name symbols again
Andreas Müller
06:13 PM Revision ba7d0c9a (cdmlib): Add SchemaUpdater_55_551
Andreas Müller
04:38 PM bug #8340: is accepted for Footnotes missing and with wrong index
Don't know what kind of feedback is needed from my side? Andreas Müller
04:27 PM feature request #8134: Implement verbatim type information in dataportal
related to issues in 5.9 so maybe we can implement it then Andreas Müller
04:13 PM feature request #8354: taxonomic registration search by name finds also typifications for this name
correct! Andreas Kohlbecker
03:53 PM feature request #8354: taxonomic registration search by name finds also typifications for this name
to me seems to be a cdmlib ticket, not cdm Andreas Müller
04:12 PM task #7296: externalize redmine api key
it is! The changes have been made in `cdmlib-ext/src/test/resources/services-external.properties` Andreas Kohlbecker
03:55 PM task #7296: externalize redmine api key
this is not a cdm ticket, please change category if cdmlib is also not correct Andreas Müller
03:30 PM Revision 2674d5ca (cdm-server): Merge branch 'release/5.8.0' into develop
jenkins
03:30 PM Revision 947103be (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
03:29 PM Revision a00fbdfa (cdm-server): updating poms for branch'release/5.8.0' with non-snapshot versions
jenkins
03:28 PM Revision 45444313 (cdm-webapp): Merge branch 'release/5.8.0' into develop
jenkins
03:28 PM Revision 82e5eca3 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
03:28 PM Revision 80b60b0b (cdm-webapp): updating poms for branch'release/5.8.0' with non-snapshot versions
jenkins
03:28 PM Revision e2ea078b (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.8.0
jenkins
03:27 PM bug #6627 (Feedback): Remaining cdm light issues
should we close this ticket and create a new remaining (II) ticket with the now open issues.
Most of the tasks hav...
Andreas Müller
03:19 PM Revision 598fbcc2 (cdm-dataportal): Merge branch 'release/5.8.0' into develop
jenkins
03:19 PM Revision 1e0c0555 (cdm-dataportal): updating poms for branch'release/5.8.0' with non-snapshot versions
jenkins
03:18 PM Revision 07bb851f (cdm-dataportal): release-preparation: production level css
jenkins
03:18 PM Revision 8e8cd135 (cdm-vaadin): Merge branch 'release/5.8.0' into develop
jenkins
03:18 PM Revision f7afd110 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
03:15 PM Revision e7aa1173 (cdm-vaadin): updating poms for branch'release/5.8.0' with non-snapshot versions
jenkins
03:15 PM Revision 6bd46cc3 (cdm-vaadin): jenkins bumping cdmlib.version to 5.8.0
jenkins
03:14 PM Revision 3c373afd (taxeditor): Merge branch 'release/5.8.0' into develop
jenkins
03:14 PM Revision 0645911c (taxeditor): Merge branch 'release/5.8.0'
jenkins
03:13 PM feature request #8273 (Feedback): abcd import: check for all specimen for DNA in DNABank
Is this already implemented? It has a commit. Andreas Müller
03:12 PM Revision f50c5671 (cdmlib): Updating develop poms back to pre merge state
jenkins
03:12 PM Revision 51a0fa9a (cdmlib): Merge branch 'master' into develop
jenkins
03:12 PM Revision d10f48ed (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:11 PM Revision 79e62164 (cdmlib): Merge branch 'release/5.8.0'
jenkins
03:11 PM feature request #8322 (Feedback): add sortindex to cdm light export
Isn't this already implemented. Review? Andreas Müller
03:08 PM bug #8088 (Feedback): Open taxon node wizard issues
can we close this and create a new ticket with open issues? There are already several commits on this ticket.
Let me...
Andreas Müller
03:07 PM feature request #8182: show blast search result
is this ready or should we create ticket for open issues? Andreas Müller
03:04 PM feature request #8388 (Closed): UTIS search block
completed Andreas Kohlbecker
03:04 PM feature request #8344 (In Progress): Cdm light export: add dummy line in simple facts table
is this fixed already? Please move to 5.10 if not Andreas Müller
02:58 PM bug #8313: Multiple categorical data get deleted when clicked on in Character Matrix
Move back to 5.8 as this seems to be ready in 5.8 milestone Andreas Müller
02:52 PM Revision 2e017144 (cdmlib): updating poms for branch'release/5.8.0' with non-snapshot versions
jenkins
02:49 PM Revision 1ec5ac22 (cdm-dataportal): ref #8388 UTIS search block: handling empty records and feedback on no results
Andreas Kohlbecker
02:48 PM Revision 1861c83d (cdm-dataportal): ref #8388 UTIS search block: handling empty records and feedback on no results
Andreas Kohlbecker
02:29 PM Revision 3b9b1523 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.8.0-SNAPSHOT
jenkins
02:29 PM Revision be362251 (cdm-webapp): updating poms for 5.9.0-SNAPSHOT development
jenkins
02:28 PM Revision 7071ef95 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.9.0-SNAPSHOT
jenkins
02:27 PM Revision 0809fa50 (cdm-vaadin): jenkins bumping cdmlib.version to 5.8.0-SNAPSHOT
jenkins
02:26 PM Revision 3f0ec1ee (cdm-vaadin): updating poms for 5.9.0-SNAPSHOT development
jenkins
02:26 PM Revision e919d9f8 (cdm-vaadin): updating poms for 5.8.0 branch with snapshot versions
jenkins
02:26 PM Revision 7de1009c (cdm-vaadin): jenkins bumping cdmlib.version to 5.9.0-SNAPSHOT
jenkins
02:26 PM Revision 834c0fd2 (cdm-server): updating poms for 5.9.0-SNAPSHOT development
jenkins
02:19 PM task #8392 (Worksforme): Types in PhycoBank
>This layout is okay except of the dot at the end. If special types are concatenated ".;" should be avoided.
This ...
Wolf-Henning Kusber
02:16 PM task #8391 (In Progress): Name page shows complete name information (II)
Andreas Müller
02:11 PM task #8391 (In Progress): Name page shows complete name information (II)
Continue #8108:
Remaining issues:

2. Inhaltlich sollten folgende Angaben zu sehen sein:
* ~~Taxa~~
...
Andreas Müller
02:13 PM feature request #8108 (Resolved): Name page shows complete name information (I)
copied remaining issues to new ticket to review and close this ticket for current milestone. Andreas Müller
02:03 PM Revision 909ca8e0 (taxeditor): Updated version in pom / project files to taxeditor version : 5.9.0-SNAPSHOT and cdmlib version : 5.9.0-SNAPSHOT
jenkins
02:03 PM Revision 076f3a94 (taxeditor): Updated version in pom / project files to taxeditor version : 5.8.0 and cdmlib version : 5.8.0
jenkins
02:03 PM Revision d1eb8075 (cdm-vaadin): updating poms for 5.9.0-SNAPSHOT development
jenkins
02:03 PM Revision 6a1b9a03 (cdm-vaadin): updating poms for 5.8.0 branch with snapshot versions
jenkins
02:02 PM Revision 0abb074a (cdm-vaadin): jenkins bumping cdmlib.version to 5.9.0-SNAPSHOT
jenkins
02:02 PM Revision 33dbd082 (cdm-dataportal): updating poms for 5.9.0-SNAPSHOT development
jenkins
01:59 PM Revision 01423b1e (cdmlib): updating poms for 5.9.0-SNAPSHOT development
jenkins
01:43 PM bug #6523 (In Progress): Correct display of misspellings in synonymy
Andreas Müller
10:55 AM bug #6523: Correct display of misspellings in synonymy
@Walter: could you please check if Nepenthes tupmanniana is really meant to be a misspelling or is it rather a homony... Andreas Müller
10:53 AM bug #6523: Correct display of misspellings in synonymy
Hallo,
danke Henning für die Hinweise. Ich nehme mal einige weitere Leute mit ins Ticket, da dies sowohl von allge...
Andreas Müller
01:38 PM Revision 24bff82e (cdm-dataportal): ref #8388 UTIS search block: better labels for providers
Andreas Kohlbecker
12:21 PM Revision bcb1dad5 (cdm-dataportal): ref #7975 implementing settings for name relationshiop lists - removing filter and offering all relation types
Andreas Kohlbecker
12:10 PM Revision a4f9d5b0 (cdm-dataportal): ref #7975 implementing settings for name relationshiop lists; new name page layout settings section
Andreas Kohlbecker
11:40 AM feature request #8304: Name page redirects to according taxon depending on query parameter
I don't think that these requirements are contradict the current implementation with the 'global' switch. As far as I... Andreas Kohlbecker
11:30 AM feature request #8304: Name page redirects to according taxon depending on query parameter
As far as I remember there is already a user request for this. At least I have discussed it with users.
Also I thin...
Andreas Müller
09:31 AM bug #6380 (Closed): typedesignations missing in homotypic group
Andreas Kohlbecker
09:30 AM bug #6380: typedesignations missing in homotypic group
Andreas Müller wrote:
> Until then why can't we use a ws call that collects all type designations of a single name i...
Andreas Kohlbecker
09:08 AM bug #6380: typedesignations missing in homotypic group
Until then why can't we use a ws call that collects all type designations of a single name in the homotypic group for... Andreas Müller
08:49 AM bug #6380: typedesignations missing in homotypic group
Andreas Müller wrote:
> The result seems to be correct. Do I understand the code correctly that you only call 1 webs...
Andreas Kohlbecker
08:04 AM bug #6380 (Feedback): typedesignations missing in homotypic group
The result seems to be correct. Do I understand the code correctly that you only call 1 webservice per homotypical gr... Andreas Müller
09:29 AM feature request #8390 (Closed): implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
copied from #6380.
This webservice should be used to speed up `type_designations_for_synonymy_group($synonymy_grou...
Andreas Kohlbecker
09:13 AM feature request #7932: Implement subject resolver for CdmPreferences
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Andreas K., do you already use the subject resolver in the pr...
Andreas Müller
08:32 AM feature request #7932: Implement subject resolver for CdmPreferences
Andreas Müller wrote:
> Andreas K., do you already use the subject resolver in the preference cache you use for vaad...
Andreas Kohlbecker
09:11 AM task #4177 (Closed): display of name relationships in synonymy broken
Andreas Kohlbecker
08:33 AM task #4177 (Feedback): display of name relationships in synonymy broken
So if this ticket is not about the comments in #note-3 and #note-4 but only about repairing and optimizing the name r... Andreas Müller
08:05 AM Revision 502063b4 (cdm-dataportal): fixing broken link in settings
Andreas Kohlbecker

07/18/2019

10:41 PM Revision 579bc6e3 (cdm-dataportal): ref #8388 UTIS search block: fixing layout bug
Andreas Kohlbecker
08:49 PM feature request #7920: Possibility to define area specific status selection
An open issue is that it should also be available for local prefs (where it is maybe more difficult to implement beca... Andreas Müller
06:40 PM feature request #7920 (Feedback): Possibility to define area specific status selection
To me this looks like being solved including the open issues. Please check and move open issues to a new ticket if ne... Andreas Müller
08:46 PM feature request #8045: Improve handling of default values and override in local preferences
with the new implementation of distribution status with different subjects if allowOverride=false in DB prefs this do... Andreas Müller
08:04 PM feature request #8045: Improve handling of default values and override in local preferences
For the above issues see also #8323#note-4 Andreas Müller
04:21 PM feature request #8045: Improve handling of default values and override in local preferences
Andreas Müller wrote:
> Choosing "default" for local preference "nomenclatural status" has no effect. It uses the ex...
Andreas Müller
01:26 PM feature request #8045: Improve handling of default values and override in local preferences
For nomencl.Code. implementation is still missing or incorrect. Also we may discuss if in DB prefs we should allow "U... Andreas Müller
01:09 PM feature request #8045: Improve handling of default values and override in local preferences
Choosing "default" for local preference "nomenclatural status" has no effect. It uses the explicitly chosen values fr... Andreas Müller
01:06 PM feature request #8045 (Feedback): Improve handling of default values and override in local preferences
Looks like this has been implemented in 5.8 so I switch milestone.
Are there open issues?
Andreas Müller
08:30 PM bug #8389 (Resolved): Correct handling of default values with allowOverride=false
It looks like currently the preferences are deleted no matter what the allowOverride value is. But if it is "false" s... Andreas Müller
08:10 PM bug #8385: Open issues in DB preferences
the above both fixes seem to work (though the last is only a workaround for a real fix (full delete of the preference)) Andreas Müller
05:55 PM bug #8385: Open issues in DB preferences
Patrick Plitzner wrote:
> Wouldn't it be better to just delete the preference if the config is `null`. `null` means...
Patrick Plitzner
05:54 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> >io.ABCD.config is stored in DB with value NULL even if nothing has changed, if this is defa...
Patrick Plitzner
04:33 PM bug #8385: Open issues in DB preferences
>io.ABCD.config is stored in DB with value NULL even if nothing has changed, if this is default value, the default sh... Andreas Müller
01:45 PM bug #8385: Open issues in DB preferences
After setting Publish Flag to default and reopening:
~~~
login : admin
editor version : 5.8.0.201907180811
serv...
Andreas Müller
01:39 PM bug #8385: Open issues in DB preferences
Patrick, can you have a look? Andreas Müller
01:34 PM bug #8385 (Closed): Open issues in DB preferences
* ~~Values on General page (Export/Import, Checklist perspective, Taxonnode Wizard) are not loaded correctly when reo... Andreas Müller
07:54 PM feature request #8256: Show all status preferences as table
CRITICAL:
Updating an existing list does not seem to work anymore. If I update and reopen the dialog everything is...
Andreas Müller
07:04 PM feature request #8256 (Feedback): Show all status preferences as table
By the way: if no area is selected the subject is /taxeditor which does not make much sense. It should be only "/". A... Andreas Müller
06:53 PM feature request #8256: Show all status preferences as table
In general this seems to work and is a great feature. Some minor issues: the table should show up below the status se... Andreas Müller
07:32 PM feature request #8323: Make nom.status and rank lists a CdmPreference
If I open a name which has a rank that is not available in the rank list, the rank is added to the list of available ... Andreas Müller
07:29 PM feature request #8323: Make nom.status and rank lists a CdmPreference
Also the prefs seem to work only after restarting TaxEditor. Maybe this is the main reason for the above mentioned is... Andreas Müller
07:11 PM feature request #8323 (Feedback): Make nom.status and rank lists a CdmPreference
Override handling does not yet work correctly for both of them. See #8045#note-9 and #8045#note-13 Andreas Müller
06:32 PM feature request #8058: Further issues for (local) preferences
Maybe we should split this ticket. Andreas Müller
05:45 PM feature request #8058 (Feedback): Further issues for (local) preferences
Katja Luther wrote:
> the common name language preference is added.
Can we still move "Available Languages" below...
Andreas Müller
06:31 PM feature request #8293: Distribution preferences for details view should be serverside preferences
Beside these issues the implementation works correctly as it looks like. This gives more consistency to data and UI. Andreas Müller
06:30 PM feature request #8293: Distribution preferences for details view should be serverside preferences
Is there a reason why if used in distribution editor, the Status field and the modifying text field in details view i... Andreas Müller
06:27 PM feature request #8293 (Feedback): Distribution preferences for details view should be serverside preferences
Andreas Müller
06:27 PM feature request #8293: Distribution preferences for details view should be serverside preferences
The preference menu is not correct. You put it to UI-DistributionData-VocsAndStatus
UI is only for UI! (as the nam...
Andreas Müller
06:13 PM feature request #8293: Distribution preferences for details view should be serverside preferences
The fix seems to work. Katja, can you please check, why empty strings are possible here. It is a bit strange. In the ... Andreas Müller
05:27 PM feature request #8293: Distribution preferences for details view should be serverside preferences
Andreas Müller wrote:
> This error is a blocker!!
I tried to fix with 955fadf4. Will see if it works
Andreas Müller
05:12 PM feature request #8293: Distribution preferences for details view should be serverside preferences
This error is a blocker!! Andreas Müller
05:11 PM feature request #8293: Distribution preferences for details view should be serverside preferences
When trying to edit a distribution in facts view I get an IAE:
~~~
login : admin
editor version : 5.8.0.20190718...
Andreas Müller
06:04 PM feature request #8383 (Closed): Add CORS header
Andreas Kohlbecker
05:53 PM feature request #8383 (Resolved): Add CORS header
Applied in changeset commit:utis-webapp|c16dc4758af86cb502dfc7f6687fdc4c8c5c5c4a. Andreas Kohlbecker
11:12 AM feature request #8383 (Closed): Add CORS header
Andreas Kohlbecker
06:01 PM Revision 72dc91d6 (cdm-dataportal): ref #8388 block to search UTIS implemented - removing debug code
Andreas Kohlbecker
05:53 PM Revision c16dc475 (utis-webapp): fix #8383 adding CORSE headers
Andreas Kohlbecker
05:52 PM Revision 0aebb4bc (taxeditor): ref #8293 try to fix IAE in Distribution Details View if status pref exists
Andreas Müller
05:52 PM Revision 86c96664 (utis-core): better metadata on phycobank
Andreas Kohlbecker
05:51 PM Revision 793ded33 (taxeditor): ref #8385 Fix potential NPE
Patrick Plitzner
05:45 PM feature request #8388 (Resolved): UTIS search block
Applied in changeset commit:cdm-dataportal|c05d1cfbddb1d4e5942efc85201405814a0f9a22. Andreas Kohlbecker
05:44 PM feature request #8388 (Closed): UTIS search block
implement a Drupal block which allows using the UTIS service Andreas Kohlbecker
05:45 PM Revision c05d1cfb (cdm-dataportal): fix #8388 block to search UTIS implemented
Andreas Kohlbecker
05:41 PM Revision 2393d9c5 (cdm-dataportal): upgrading to fontawesome 5.9.0
Andreas Kohlbecker
05:37 PM Revision cf115b19 (taxeditor): ref #8385 Remove publish flag preference when set to default
Patrick Plitzner
05:37 PM Revision 34ec6317 (taxeditor): ref #8192 Expand media section by default
Patrick Plitzner
05:25 PM Revision 955fadf4 (taxeditor): ref #8293 try to fix IAE in Distribution Details View if status pref exists
Andreas Müller
04:20 PM bug #8375: ReferenceEllypsisFormatter produces too long strings in specific cases
Problem: long book titles, especially if the reference is part of book.
Example longest in book - reference
![]...
Wolf-Henning Kusber
04:19 PM feature request #7932: Implement subject resolver for CdmPreferences
Andreas K., do you already use the subject resolver in the preference cache you use for vaadin? Andreas Müller
04:18 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
To me this ticket seems to be fixed and open issues are moved to new tickets. In general the structure for handling d... Andreas Müller
03:54 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
Andreas Müller wrote:
> On local prefs Name Details View page the "Restore Defaults" button seems to be enabled even...
Andreas Müller
03:52 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
Andreas Müller wrote:
> With empty preferences when only the DistrEditor page is opened without any change afterward...
Andreas Müller
03:05 PM bug #8386 (Closed): Disable admin menu when not logged into a DB
currently it is shown after (re)start which does not make sense as admin functionality is always related to DB login. Andreas Müller
01:14 PM feature request #8384 (New): Consider to use icon links for all reference citations
Candidates:
* Bibliography
Andreas Kohlbecker
01:13 PM feature request #8320 (Closed): Links to reference page as appendend icon instead of having the whole citation as link
Andreas Müller wrote:
> Do we have any rules where these icons are used? E.g. in the bibliography they do not seem t...
Andreas Kohlbecker
12:39 PM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
Do we have any rules where these icons are used? E.g. in the bibliography they do not seem to be used yet though it m... Andreas Müller
12:37 PM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
Andreas Kohlbecker wrote:
> And this one
>
> http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_datapor...
Andreas Müller
08:13 AM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
And this one
http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/a67fc2ab-1452-4c32-84b6...
Andreas Kohlbecker
08:05 AM feature request #8320: Links to reference page as appendend icon instead of having the whole citation as link
http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/c246856f-c03e-4cb7-ac92-d9b2864084cd
...
Andreas Kohlbecker
12:51 PM feature request #8294 (Closed): Make display of ID in source and ID Namespace configurable
translated preferences. Closing the ticket. Patrick Plitzner
12:12 PM feature request #8294 (Feedback): Make display of ID in source and ID Namespace configurable
All the rest seems to work and looks ok. Andreas Müller
12:08 PM feature request #8294: Make display of ID in source and ID Namespace configurable
same in local preference (if this is different code) Andreas Müller
12:06 PM feature request #8294: Make display of ID in source and ID Namespace configurable
Server side preferences are not yet translated (Submenu Sources and Labels on page) (update code before changing as ... Andreas Müller
12:49 PM Revision ddaac84e (taxeditor): ref #8294 i18n for plugin.xml
Patrick Plitzner
12:38 PM Revision 7ec03c92 (taxeditor): ref #8294 i18n
Patrick Plitzner
12:05 PM Revision 22f28ff0 (taxeditor): change label for ID Namespace
Andreas Müller
11:31 AM bug #8260 (Closed): Details and Supplemental Data View do not save the expansion state of sections
Patrick Plitzner
10:41 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
Fix 20b35d99 seems to solve the problem. I think we can close the ticket. Andreas Müller
10:55 AM bug #8129: Load images asynchronously in media details view
Andreas Müller wrote:
>...
> * the size of the image is recomputed, most often the size can be computed from metada...
Andreas Müller
10:52 AM bug #8129: Load images asynchronously in media details view
Andreas Müller wrote:
> Also when switing between 2 entries in bulk editor with <2sec between switches often the ent...
Andreas Müller
10:46 AM bug #8129: Load images asynchronously in media details view
The expand problem seems to be solved (see #8260). Final question: what is the default. I suggest to have "expanded" ... Andreas Müller
12:51 AM bug #8129: Load images asynchronously in media details view
Please test intensively e.g. with the 2 given media if the behavior is as you would expect for rapid data entry and c... Andreas Müller
12:50 AM bug #8129: Load images asynchronously in media details view
The loading does not stop immediately when a new URL is entered but should. Otherwise an image is shown which does no... Andreas Müller
12:48 AM bug #8129: Load images asynchronously in media details view
Andreas Müller wrote:
> Also when switing between 2 entries in bulk editor with <2sec between switches often the ent...
Andreas Müller
12:44 AM bug #8129: Load images asynchronously in media details view
Also when switing between 2 entries in bulk editor with <2sec between switches often the entries are not selected any... Andreas Müller
12:42 AM bug #8129: Load images asynchronously in media details view
Hmm, sometimes it works but most often it does not. Looks like you have at least to open a new bulk editor to make it... Andreas Müller
12:07 AM bug #8129: Load images asynchronously in media details view
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Now, the media details view is always collpased and the state i...
Andreas Müller
10:42 AM bug #8374: Save genus generated for a species with a different reference
Problem with bibliographic reference Part of Book.
![](picture938-1.png)
![](picture938-2.png)
hint: Book titel co...
Wolf-Henning Kusber
10:34 AM bug #6523: Correct display of misspellings in synonymy
Als unbeteiligter Leser halte ich die Ausgabe für sachlich falsch oder zumindes für unverständlich. Erst mit externer... Wolf-Henning Kusber
10:04 AM Revision 3b069ad4 (taxeditor): ref #8129 Handel widget disposed exceptions
Patrick Plitzner
10:00 AM Revision 20b35d99 (taxeditor): ref #8260 Fix string comparison
Patrick Plitzner
08:16 AM bug #8287 (Closed): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
Andreas Kohlbecker
08:13 AM feature request #8304: Name page redirects to according taxon depending on query parameter
This is a misunderstanding. During the standup yesterday I was talking about a global switch which overrides the defa... Andreas Kohlbecker

07/17/2019

08:54 PM feature request #7408 (In Progress): [E+M] Support for preferred common names in data portal
we may discuss, if we simply use different features for th different common names. Therefore I take this ticket and a... Andreas Müller
07:28 PM bug #8287: RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
combination of types and none are searchable without errors in Vaadin and the portal. If this is the feedback for thi... Wolf-Henning Kusber
07:12 PM bug #8231 (Worksforme): Name relation non
Andreas Kohlbecker
07:07 PM task #5857 (Closed): show nomenclatural status for for representations of TaxonName
Andreas Kohlbecker
06:56 PM bug #8365 (Closed): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
ok, so i am closing this issue now Andreas Kohlbecker
05:22 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
In the Youngia example the version with brackets is clearer.
Wolf-Henning Kusber
09:02 AM bug #8365 (Feedback): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
Andreas Kohlbecker
09:02 AM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
removing the parentheses would affect all portals. Before doing this we should keep the effect on other portals in mi... Andreas Kohlbecker
06:45 PM feature request #8294 (Resolved): Make display of ID in source and ID Namespace configurable
All issues should be fixed now.
What still would be nice is if the disabled local preferences would reflect the st...
Patrick Plitzner
06:45 PM bug #8382 (Closed): Local Supplemental Data Source Preferences should reflect the state of admin preferences
Copied from #8294:
"What still would be nice is if the disabled local preferences would reflect the state of the a...
Patrick Plitzner
06:30 PM Revision 660c3f90 (taxeditor): ref #8294 Swap showIdInSource and ShowIdNamespace
Patrick Plitzner
06:07 PM task #8209: use ellypsed references for all reference comboboxes
last screen shot was misuse of an in-reference Wolf-Henning Kusber
06:06 PM task #8209: use ellypsed references for all reference comboboxes
Minor problem,
Name editor if a new bibliographic reference is entered with a very long title.
![](picture115-1.png)
Wolf-Henning Kusber
05:40 PM task #8209: use ellypsed references for all reference comboboxes
Name Editor with "Nomenclatural reference" is working. No problem because the maximum breadth of the drop down is siz... Wolf-Henning Kusber
07:58 AM task #8209: use ellypsed references for all reference comboboxes
I copied the latest problem to a new ticket: #8375
Did you check all editors with reference comboboxes? Is ellypsi...
Andreas Kohlbecker
05:59 PM bug #8381 (Closed): Closing the details view throws widget is disposed exception
steps to reproduce:
1. Open editor
1. Connect
1. Open a taxon
1. Close details view
Note: The exception is n...
Patrick Plitzner
05:45 PM feature request #8245 (Closed): Improve representation of DescriptionElementBase.timeperiod
The formatting of year only or year and month only looks ok now so we can close the ticket. Other open issues will be... Andreas Müller
05:45 PM bug #8375: ReferenceEllypsisFormatter produces too long strings in specific cases
Die bibliographische Referenz (Journal) wird hier nicht abgekürzt. Je kürzer der Journal title desto eher Verwechselu... Wolf-Henning Kusber
08:04 AM bug #8375: ReferenceEllypsisFormatter produces too long strings in specific cases
This could an effect of the changes which have been applied for #8375
Andreas Kohlbecker
07:55 AM bug #8375 (New): ReferenceEllypsisFormatter produces too long strings in specific cases
Again there are extremely long entries. The breadth of the dropdown box differs extremly. (was originally reported in... Andreas Kohlbecker
05:27 PM feature request #8304 (Feedback): Name page redirects to according taxon depending on query parameter
I do not fully understand this solution. I thought it should be configurable for each location that has a link to a n... Andreas Müller
05:14 PM feature request #8320 (Feedback): Links to reference page as appendend icon instead of having the whole citation as link
Is there an example somewhere on test server or integration? Andreas Müller
05:06 PM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > Now, nomenclatural reference is ne...
Patrick Plitzner
04:33 PM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Now, nomenclatural reference is never expanded. Maybe it was li...
Andreas Müller
11:03 AM bug #8260: Details and Supplemental Data View do not save the expansion state of sections
Andreas Müller wrote:
> Now, nomenclatural reference is never expanded. Maybe it was like this before already and I ...
Patrick Plitzner
04:58 PM bug #8129: Load images asynchronously in media details view
Andreas Müller wrote:
> Now, the media details view is always collpased and the state is not saved - at least if I c...
Patrick Plitzner
04:43 PM bug #8129 (Feedback): Load images asynchronously in media details view
Now, the media details view is always collpased and the state is not saved - at least if I choose the above mentioned... Andreas Müller
10:36 AM bug #8129 (Resolved): Load images asynchronously in media details view
Implemented asynchronous loading in advanced media view.
Opened another ticket for placeholder image -> #8378
Patrick Plitzner
04:56 PM feature request #8283 (Closed): Allow adding media to terms in taxeditor
Created new ticket for remaining issues -> #8380 Patrick Plitzner
04:31 PM feature request #8283: Allow adding media to terms in taxeditor
Patrick Plitzner wrote:
> Just when I wrote the last comment it happened. But still, it is very unlikely that this w...
Andreas Müller
10:56 AM feature request #8283: Allow adding media to terms in taxeditor
Just when I wrote the last comment it happened. But still, it is very unlikely that this will happen to a user. We ma... Patrick Plitzner
10:51 AM feature request #8283: Allow adding media to terms in taxeditor
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > The data may got lost the followin...
Patrick Plitzner
04:56 PM bug #8380 (New): Unsaved media gets lost in details view
Copied from #8283:
On rem_conf_am open features.
* Got to Vocabulary "Untitled" and open term "test2".
* Open ...
Patrick Plitzner
02:27 PM Revision b91b98c5 (taxeditor): ref #8294 Move supplemental data source preferences to sub menu
Patrick Plitzner
01:52 PM Revision 456115c5 (taxeditor): ref #8294 Add missing "Show UUID/ID" option to preference
Patrick Plitzner
01:19 PM Revision 31457bf1 (taxeditor): ref #8294 code cleaning
Patrick Plitzner
12:04 PM Revision 8d5d43cb (utis-client): updating documentation on templates
Andreas Kohlbecker
11:54 AM Revision 1ff06b58 (taxeditor): Fix possible NPE
Patrick Plitzner
11:49 AM bug #8368 (Closed): problems in compose_cdm_specimen_or_observation_tree_entry()
error message suppressed and visible effect of the problem solved, the further discussion and post release review tas... Andreas Kohlbecker
11:47 AM bug #8370 (Closed): feature blocks created by compose_description_element_individuals_association() are broken
problem solved discussion and post release review task copied to #8379 Andreas Kohlbecker
11:47 AM feature request #8135 (New): Implement verbatim type information in TaxEditor
temporary disabled textual type designation and moved to 5.9 milestone where the necessary model changes will be impl... Patrick Plitzner
11:46 AM Revision d7f33c8d (taxeditor): ref #8135 temporary disabled textual type designation
Patrick Plitzner
11:46 AM task #8379 (Closed): Review strange specimen implementations
Please
* #8368
* #8370
I am repeating according comments from the original tickets here:
----
# #8370
...
Andreas Kohlbecker
10:59 AM Revision a63beab2 (taxeditor): ref #8129 Handle all exceptions
Patrick Plitzner
10:44 AM Revision 79959591 (cdmlib): ref #8281 and E+M import (additional attributes in TeamOrPersonBase, Reference and TaxonNode)
Andreas Müller
10:44 AM Revision 07ab7ef0 (cdmlib): ref #5448 adapt parser to recognize old ranks like proles
Andreas Müller
10:35 AM Revision 663f4308 (taxeditor): ref #8129 Fix potential NPE
Patrick Plitzner
10:19 AM feature request #8378 (New): Show placeholder for asynchronously loaded images in details view
Patrick Plitzner
10:03 AM Revision 45272f9d (taxeditor): ref #8129 minor refactoring
Patrick Plitzner
10:01 AM Revision 1ce04105 (taxeditor): ref #8129 Load images asynchronously in advanced media view
Patrick Plitzner
08:44 AM bug #8377 (Closed): TypeDesignationsEditors: Delete must not be allowe before the workingset is saved
this affects both:
* NameTypeDesignationEditor
* SpecimenTypeDesignationWorkingsetEditor
Im RegistrationWorkli...
Andreas Kohlbecker
08:39 AM bug #8376 (Closed): RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting of a popup editor has been triggered
Andreas Kohlbecker
08:10 AM bug #7845 (Closed): NamePopupEditor new Genus button should clear the genus name field in the new editor
Andreas Kohlbecker
08:08 AM feature request #8284 (Closed): starting a registration for an existing name causes the name editor to pop up in read only mode
Andreas Kohlbecker
07:49 AM feature request #7966 (Closed): Registration search simplify type select options
Andreas Kohlbecker
07:48 AM feature request #8306 (Closed): Registration page links to registered taxon name
Andreas Kohlbecker

07/16/2019

07:58 PM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
OK, now I at least understand what it is used for. However, I doubt (but am not sure) that this is still needed. Mayb... Andreas Müller
06:57 PM feature request #8306: Registration page links to registered taxon name
fine, ticket can be closed. Wolf-Henning Kusber
06:54 PM feature request #7966: Registration search simplify type select options
Lectotype gives back: Specimen types AND Name types of genera, species and below = correct
Problem fully resolved....
Wolf-Henning Kusber
06:45 PM feature request #7966: Registration search simplify type select options
Original designation gives back: Name types of genera = correct
Holotype gives back: Specimen types of species and b...
Wolf-Henning Kusber
06:29 PM task #8209: use ellypsed references for all reference comboboxes
Again there are extremely long entries. The breadth of the dropdown box differs extremly.
![](picture177-1.png)
Wolf-Henning Kusber
06:18 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
Quote
"OK, parentheses are removed again."
The brackets are reinstated not removed but should be removed, see S...
Wolf-Henning Kusber
12:08 PM bug #8365 (Resolved): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
OK, parentheses are removed again. Andreas Kohlbecker
06:11 PM feature request #8284: starting a registration for an existing name causes the name editor to pop up in read only mode
Info for Genera without reference:
The chosen name needs to be completed before it can be used. Please add the nome...
Wolf-Henning Kusber
06:09 PM bug #7187 (Closed): ReferenceEditor: saving with DOI casues exception
Andreas Kohlbecker
05:46 PM bug #7187: ReferenceEditor: saving with DOI casues exception
Review fehlte. Feature seit Monaten ohne Beanstandung im Routinebetrieb der Release Version. Ticket kann geschlossen ... Wolf-Henning Kusber
06:00 PM bug #7845: NamePopupEditor new Genus button should clear the genus name field in the new editor
new error: #8374 Wolf-Henning Kusber
05:56 PM bug #7845: NamePopupEditor new Genus button should clear the genus name field in the new editor
Ticket can be closed, but "Save" error when an uninominal should be saved. Wolf-Henning Kusber
06:00 PM bug #8374 (Duplicate): Save genus generated for a species with a different reference
Test system:
New species entered. Genus not in list.
Input "new" genus with reference entered. Saving result in a...
Wolf-Henning Kusber
05:56 PM bug #7885 (Worksforme): registration search by name finds also typifications for this name
this is now obviously working:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration-...
Andreas Kohlbecker
05:51 PM feature request #8294 (Feedback): Make display of ID in source and ID Namespace configurable
Patrick, can you try to fix the open issues? Andreas Müller
05:47 PM feature request #8294: Make display of ID in source and ID Namespace configurable
yes, it is switched and also in both views it is called "ID in Namespace" but should be "ID Namespace". Also ID Names... Andreas Müller
05:38 PM feature request #6709 (Closed): Do not show UUID on media page

And now to your last question:
> By the way, why have we removed the possibility to show multiple representation...
Andreas Kohlbecker
05:35 PM feature request #6709: Do not show UUID on media page
Andreas Müller wrote:
> By the way, is there a reason why we show the file name below image? Sometimes it is very ug...
Andreas Kohlbecker
05:30 PM feature request #6709: Do not show UUID on media page
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > e.g.: http://int.e-taxonomy.eu/dataportal/integration/referen...
Andreas Kohlbecker
02:41 PM feature request #6709 (Feedback): Do not show UUID on media page
Feel free to create new tickets from the above questions. Andreas Müller
02:41 PM feature request #6709: Do not show UUID on media page
Connected with the representation is the question which filename to use different representations have different file... Andreas Müller
02:39 PM feature request #6709: Do not show UUID on media page
By the way, why have we removed the possibility to show multiple representations on the media page? It would be nice ... Andreas Müller
02:35 PM feature request #6709: Do not show UUID on media page
By the way, is there a reason why we show the file name below image? Sometimes it is very ugly like in the above ment... Andreas Müller
02:14 PM feature request #6709: Do not show UUID on media page
Andreas Kohlbecker wrote:
> e.g.: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/media/d0b...
Andreas Müller
05:34 PM feature request #8373 (New): media page: avoid showing ugly file names as title replacement

By the way, is there a reason why we show the file name below image? Sometimes it is very ugly like in the above me...
Andreas Kohlbecker
05:29 PM feature request #8372 (New): media page: show media type in the page title
distinguish the different media types an to adapt the title accordingly: Instead of "Media ...", "Image ...", "Video ... Andreas Kohlbecker
05:23 PM bug #8340 (Feedback): is accepted for Footnotes missing and with wrong index
Andreas Kohlbecker
05:23 PM bug #8340: is accepted for Footnotes missing and with wrong index
Andreas Müller wrote:
> I do not really understand the problem. On http://test.e-taxonomy.eu/dataportal/preview/cich...
Andreas Kohlbecker
02:07 PM bug #8340: is accepted for Footnotes missing and with wrong index
I do not really understand the problem. On http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/tax... Andreas Müller
05:22 PM bug #8260 (Feedback): Details and Supplemental Data View do not save the expansion state of sections
Now, nomenclatural reference is never expanded. Maybe it was like this before already and I simply did not recognize. Andreas Müller
05:15 PM feature request #8283 (Feedback): Allow adding media to terms in taxeditor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > The data may got lost the following way.
> >
> > * Open term...
Andreas Müller
05:13 PM feature request #6316 (Closed): display source references of media objects in media page
using ; as separator for multiple sources: commit:cdm-dataportal|c021779a Andreas Kohlbecker
02:55 PM feature request #6316 (Feedback): display source references of media objects in media page
Generally this works. Only we should replace "," by ";" as separator for multiple sources. The former is often part o... Andreas Müller
05:07 PM Revision c021779a (cdm-dataportal): ref #6316 using ; as separator for multiple sources
Andreas Kohlbecker
05:03 PM feature request #8245: Improve representation of DescriptionElementBase.timeperiod
here it is: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/c246856f-c03e-4cb7-ac92-d9... Andreas Kohlbecker
02:59 PM feature request #8245: Improve representation of DescriptionElementBase.timeperiod
Andreas Kohlbecker wrote:
> done, for testing you can use for example http://edit.test/d7/reference_int/cdm_dataport...
Andreas Müller
05:02 PM bug #8371 (New): When creating a new term for a vocabulary the term should have the focus afterwards
... maybe even better, the focus should go to the details view label field to allow immediately enter the label for t... Andreas Müller
05:02 PM bug #8343: potential timezone problem in application stack
Andreas Müller wrote:
> I don't understand why this is rejected. The problem still exists as you can see in the abov...
Andreas Kohlbecker
04:47 PM bug #8343: potential timezone problem in application stack
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Maybe this is an issue which comes from the time when the tim...
Andreas Kohlbecker
03:18 PM bug #8343: potential timezone problem in application stack
Andreas Kohlbecker wrote:
> Maybe this is an issue which comes from the time when the timezone data was not correctl...
Andreas Müller
03:16 PM bug #8343 (Feedback): potential timezone problem in application stack
I don't understand why this is rejected. The problem still exists as you can see in the above link. It might not be a... Andreas Müller
04:47 PM bug #8129: Load images asynchronously in media details view
Also we may want to have a replacement image which shows "loading" or something similar while the image is loading. A... Andreas Müller
04:44 PM bug #8129 (Feedback): Load images asynchronously in media details view
It seems to work only in the simple view but not in the advanced view.
As an example use rem_conf_am, bulk editor ...
Andreas Müller
04:44 PM bug #8370: feature blocks created by compose_description_element_individuals_association() are broken
Andreas Müller wrote:
> I think you accidentaly changed back to status "new"
thanx for fixing this Andreas.
@K...
Andreas Kohlbecker
04:08 PM bug #8370 (Resolved): feature blocks created by compose_description_element_individuals_association() are broken
I think you accidentaly changed back to status "new" Andreas Müller
04:04 PM bug #8370 (New): feature blocks created by compose_description_element_individuals_association() are broken
this bug has been introduced with commit:cdm-dataportal|e89c1115 Andreas Kohlbecker
04:03 PM bug #8370 (Resolved): feature blocks created by compose_description_element_individuals_association() are broken
Applied in changeset commit:cdm-dataportal|43d01429e6dbd2d56970902ad525376f00b699b1. Andreas Kohlbecker
04:00 PM bug #8370 (Closed): feature blocks created by compose_description_element_individuals_association() are broken
For example Achnanthidium exiguum (Grunow) Czarn. in Algaterra shows multiple errors in the error box:
~~~
Warnin...
Andreas Kohlbecker
04:09 PM Revision 0a59879e (cdm-dataportal): renaming confusing render array key from 'markup' to 'specimen_table'
Andreas Kohlbecker
04:03 PM Revision 43d01429 (cdm-dataportal): fix #8370 fixing bug introduced in e89c1115
Andreas Kohlbecker
03:20 PM feature request #8320 (Resolved): Links to reference page as appendend icon instead of having the whole citation as link
Andreas Müller
03:17 PM bug #8369 (Closed): SpecimenTypeDesignationDTO can not be serialized to JSON
Andreas Kohlbecker
02:19 PM bug #8369 (Closed): SpecimenTypeDesignationDTO can not be serialized to JSON
SpecimenTypeDesignationDTO is missing getters and setters and thus can not be serialized Andreas Kohlbecker
03:16 PM Revision c45d681a (cdmlib): ref #8369 SpecimenTypeDesignationDTO: adding missing getters and basing on TypedEntityReference
Andreas Kohlbecker
03:15 PM bug #8368 (Feedback): problems in compose_cdm_specimen_or_observation_tree_entry()
Katja, please help disentangling the situation. Andreas Kohlbecker
03:13 PM bug #8368: problems in compose_cdm_specimen_or_observation_tree_entry()
After fixing the problems in this code i noticed that this code is not generating any output at all.
I attempted t...
Andreas Kohlbecker
02:19 PM bug #8368: problems in compose_cdm_specimen_or_observation_tree_entry()
working on this issue I found another issue: #8369 Andreas Kohlbecker
02:18 PM bug #8368 (In Progress): problems in compose_cdm_specimen_or_observation_tree_entry()
Andreas Kohlbecker
12:10 PM bug #8368 (Closed): problems in compose_cdm_specimen_or_observation_tree_entry()
Hallo Katja,

ich leite das mal an dich weiter, denn es gibt hier ein Problem mit deinem Kode in compose_cdm_speci...
Andreas Kohlbecker
03:14 PM Revision 6abd581c (cdm-dataportal): typo
Andreas Kohlbecker
03:14 PM Revision 0557d51a (cdm-dataportal): ref #8368 fixing check for exitance of property
Andreas Kohlbecker
03:14 PM task #8118: Update MySQL drivers
Andreas Kohlbecker wrote:
> **The proper solution it the timezone problem is documented at MySqlFaq#The-server-time-...
Andreas Müller
01:44 PM Revision aa6598d8 (cdm-dataportal): avoiding php warnings due to missing
Andreas Kohlbecker
01:36 PM Revision 13581ffc (cdmlib): ref #8365 removing parentheses from code + accession number - again, adapting test
Andreas Kohlbecker
01:32 PM Revision f2b0e412 (cdmlib): ignoring just the test() method in TaxonRelationshipsDTOTest
Andreas Kohlbecker
12:48 PM feature request #7791 (Closed): Visualize the phycobank higher taxon graph
No improvements are needed by now Andreas Kohlbecker
12:47 PM bug #8321 (Closed): Namepage shows wrong taxa as related to the name
Wolf-Henning Kusber wrote:
> Both Eunotia krammeri with different Author teams are not mixed anymore. The described ...
Andreas Kohlbecker
12:41 PM bug #8278 (Closed): LazyInitializationException (LIE) in ReferenceEllypsisCaptionGenerator
closing, since this problem no longer occurred. Andreas Kohlbecker
12:13 PM feature request #8366 (Closed): Same typedesignation display for registration page as in name page
Andreas Kohlbecker
12:09 PM feature request #8357 (Closed): implement client adapter for diatom base
Andreas Kohlbecker
12:07 PM Revision 12516e6b (cdmlib): ref #8365 removing parentheses from code + accession number - again
Andreas Kohlbecker
11:30 AM Revision 8f919bc0 (utis-core): attempt to create a 1.0 version of utis which is not causing a masssive startup delay - not usable yet
Andreas Kohlbecker
11:28 AM Revision c121ad4a (utis-webapp): using utis-core 1.2.1-SNAPHOT, but this combination is causing problems on the server
Andreas Kohlbecker

07/15/2019

04:30 PM bug #8233: [Follow up] Creating type duplicates
Move to next milestone for 5.8 release Patrick Plitzner
04:29 PM Revision 6f1e2526 (taxeditor): ref #8129 Fix refresh bug when adding a new empty media to a term
Patrick Plitzner
04:14 PM bug #8225: Deleting one of two type designations removes both
Move to next milestone to implement a better solution than the temporary fix. Patrick Plitzner
04:02 PM feature request #6849: [DISCUSS] How to handle "kind of" term creation in TermEditor
Moving to next milestone for further discussion Patrick Plitzner
03:58 PM feature request #8135 (Feedback): Implement verbatim type information in TaxEditor
@Andreas: There was something Walter wanted but I can't remember what it was. Depending on that we may close this tic... Patrick Plitzner
03:45 PM Revision f19b887f (utis-core): limiting GBIFBackboneClient to 1000 subchecklists
Andreas Kohlbecker
03:27 PM task #8130: Check if related feature data is cleared when supported facts type is changed
Move to next milestone for remaining discussion Patrick Plitzner
03:26 PM feature request #8044: Add "Move to..." menu to term editor
Move to next milestone because this is still considered experimental Patrick Plitzner
03:25 PM feature request #8248: Implement OWL import
Move to next milestone because this is still considered experimental Patrick Plitzner
03:24 PM feature request #6774: Implement OWL export
Move to next milestone because this is still considered experimental Patrick Plitzner
03:23 PM feature request #8335 (Resolved): Store character matrix table state as DB preference
Patrick Plitzner
03:22 PM feature request #8335: Store character matrix table state as DB preference
Move to next milestone because the character matrix is still considered experimental Patrick Plitzner
03:20 PM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix
Move to next milestone because this is still considered experimental Patrick Plitzner
03:19 PM feature request #8294: Make display of ID in source and ID Namespace configurable
Tested on nightly: The admin and local preferences work as expected BUT they seem to be swapped. Also the one prefere... Patrick Plitzner
02:36 PM feature request #8283: Allow adding media to terms in taxeditor
Added #8367 for remaining issues and discussion
All the rest should be implemented and functional now
Patrick Plitzner
02:34 PM bug #8367 (New): Advanced media view is not available for media not edited in media details view
Copied from #8283:
"With the current implementation it is not possible to switch between advanced and simple view bu...
Patrick Plitzner
02:29 PM feature request #8286 (Closed): Add cm as unit term to CDM
Testes and already used in additivity_ontology on test server. Patrick Plitzner
02:22 PM feature request #8351 (Closed): name page: show type designations with map
Andreas Kohlbecker
02:12 PM Revision 556458d0 (utis-core): removing obsolte % from like match mode query
Andreas Kohlbecker
01:57 PM Revision 1461f4eb (utis-webapp): ref #8357 adding DiatomBaseClient to the index.html
Andreas Kohlbecker
01:55 PM task #8363 (In Progress): PESI SOAP service seems to return duplicate records
I send an email to Bart .... Andreas Kohlbecker
01:17 PM task #8363: PESI SOAP service seems to return duplicate records
As the uuid seems to be the same I don't think we have data duplicates Andreas Müller
01:16 PM task #8363: PESI SOAP service seems to return duplicate records
If you are sure that this is not a data or data submission issue, I will delegate this problem to Bart Vanhoorn. Andreas Kohlbecker
01:10 PM task #8363: PESI SOAP service seems to return duplicate records
Why did you assign this to me. As it does not seem to be data issue but a service issue I can't see what I can do. Andreas Müller
12:58 PM task #8363: PESI SOAP service seems to return duplicate records
The search for "Crepis foetida%" (`http --timeout 600 https://cybertaxonomy.eu/eu-bon/utis/1.3/search 'providers==pes... Andreas Kohlbecker
12:12 PM task #8363: PESI SOAP service seems to return duplicate records
can you say which data is duplicated?
Does it appear as duplicate in the eu-nomen portal as well?
Andreas Müller
01:25 PM Revision d1895dbe (utis-webapp): ref #8357 activating DiatomBaseClient in UTIS controller
Andreas Kohlbecker
01:24 PM Revision bed1d4af (utis-core): ref #8357 implementing DiatomBaseClient on base of the WoRMS client
Andreas Kohlbecker
12:38 PM Revision a2dbd247 (utis-core): bumping version to 1.2.3
Andreas Kohlbecker
11:25 AM feature request #6238: add name of sec reference to display of concept relations in portal and a little header
Hi Gabi,
ich habe gerade dieses Ticket hier gefunden - ist erledigt.
Kannst du mal gucken ob das jetzt soweit O...
Andreas Kohlbecker

07/13/2019

06:11 PM feature request #8366: Same typedesignation display for registration page as in name page
Image position and type positions are fine. The source interrupt the reading but is an important reference.
![](pict...
Wolf-Henning Kusber
05:55 PM feature request #8366: Same typedesignation display for registration page as in name page
Name and Registration pages are fine.
For types, map and specimens apear first, than the related name. I like this!
...
Wolf-Henning Kusber

07/12/2019

09:02 PM Revision 8e8784d0 (cdm-dataportal): ref #8366 adapting tests to full typedesignation display with map in registration page
Andreas Kohlbecker
08:34 PM Revision 6e686cc7 (cdmlib): Revert "ignoring TaxonRelationshipsDTOTest"
This reverts commit 18b443282498e7bdbccadf14a861f6b474825297. Andreas Kohlbecker
08:25 PM feature request #8366: Same typedesignation display for registration page as in name page
Wolf-Henning Kusber wrote:
> No review, may be I was to fast:
> http://test.e-taxonomy.eu/dataportal/preview/phyco...
Andreas Kohlbecker
07:29 PM feature request #8366: Same typedesignation display for registration page as in name page
Name page okay: http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/8ad8bc6d-b413-4af1-8876-fb... Wolf-Henning Kusber
07:28 PM feature request #8366: Same typedesignation display for registration page as in name page
No review, may be I was to fast:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration...
Wolf-Henning Kusber
05:11 PM feature request #8366: Same typedesignation display for registration page as in name page
please review Andreas Kohlbecker
05:10 PM feature request #8366 (Resolved): Same typedesignation display for registration page as in name page
Applied in changeset commit:cdm-dataportal|41a348be0fd4782a984dd5f4e65069d7c7cb99f4. Andreas Kohlbecker
03:42 PM feature request #8366 (Closed): Same typedesignation display for registration page as in name page
The registration page should display the typedesignation in the same ways as in the name page.
A map should also be ...
Andreas Kohlbecker
07:15 PM bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
Reviewing the screen shot:
First representation: Lectotype (reference) gathering(Code accession number)
Second repr...
Wolf-Henning Kusber
11:59 AM bug #8365 (Feedback): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
I removed the parentheses but these now causes inconsistent display:
![](picture686-1.png)
What do you think He...
Andreas Kohlbecker
06:45 PM Revision 18b44328 (cdmlib): ignoring TaxonRelationshipsDTOTest
Andreas Kohlbecker
06:20 PM Revision deb2fc24 (cdm-dataportal): ref #8108 adding missing footnotes to name page
Andreas Kohlbecker
05:47 PM Revision b8a0efb3 (cdm-dataportal): grouping and doumenting ws calls
Andreas Kohlbecker
05:33 PM Revision 28702a86 (cdmlib): implemting TypeDesignationPortalController
Andreas Kohlbecker
05:32 PM Revision 35a38115 (cdmlib): ref #8365 putting parentheses back
Andreas Kohlbecker
05:26 PM Revision d8b10f90 (cdm-dataportal): ref #8366 fixing bug
Andreas Kohlbecker
05:23 PM Revision b9fcde0c (cdm-dataportal): ref #8366 adapting tests to full typedesignation display with map in registration page
Andreas Kohlbecker
05:10 PM Revision 41a348be (cdm-dataportal): fix #8366 full typedesignation display with map in registration page
Andreas Kohlbecker
04:00 PM Revision a9a04561 (cdm-dataportal): ref #8366 refactoring typedesignation and map functions
Andreas Kohlbecker
02:44 PM Revision 3000a28d (cdmlib): ref #8365 stripping collection code from accession number only if followed by whitespace
Andreas Kohlbecker
12:01 PM feature request #8357 (In Progress): implement client adapter for diatom base
Andreas Kohlbecker
12:01 PM feature request #8357: implement client adapter for diatom base
Bart Vanhoorne wote:
diatombase.org (and all other subregisters in WoRMS/Aphia http://www.marinespecies.org/subre...
Andreas Kohlbecker
07:29 AM Revision 7fa459c8 (cdmlib): ref #8283 Fix possible NPE when no media is attached to term
Patrick Plitzner
07:28 AM Revision 1ab658e8 (taxeditor): ref #8011, #8129 Fix possible NPEs when media URI can not be resolved
Patrick Plitzner

07/11/2019

06:50 PM Revision 78ddfbeb (taxeditor): ref #8011 Show term media
Patrick Plitzner
06:11 PM Revision a9b9edad (cdmlib): ref #8365 removing parentheses from code + accession number
Andreas Kohlbecker
06:04 PM bug #8365 (Resolved): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
We should also consider removing the parentheses from the accession number since this seems to be useless in most sit... Andreas Kohlbecker
06:00 PM bug #8365 (Closed): DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
Users frequently enter the collection code with the accession number which can cause to code to appear duplicated in ... Andreas Kohlbecker
06:02 PM Revision f1248e50 (cdmlib): ref #8365 stripping collection code from accession number in DerivedUnitFacadeCacheStrategy
Andreas Kohlbecker
06:02 PM Revision 4aa385eb (cdmlib): avoiding NPE
Andreas Kohlbecker
05:30 PM Revision 4f7a5ec7 (cdm-dataportal): avoiding undefined property notice
Andreas Kohlbecker
04:41 PM bug #6151: implement pager for search service
Email sent to Scott Chamberlain Andreas Kohlbecker
04:28 PM bug #6151 (Resolved): implement pager for search service
Andreas Kohlbecker
04:24 PM bug #8364 (Closed): ext-links module: problems
Hallo,
wo wir gerade vom Portal reden...
Ich habe mal den External links – sidebar getestet (bei den Cactaceae, O...
Andreas Kohlbecker
03:29 PM Revision c7a4af2c (utis-webapp): doc on log file places
Andreas Kohlbecker
03:10 PM Revision 971fab73 (utis-webapp): impoving text on index.html
Andreas Kohlbecker
03:07 PM Revision 039b1a7b (utis-webapp): deleting obsolte GBIFBetaBackboneClient
Andreas Kohlbecker
03:06 PM Revision 286229be (utis-webapp): updating documentation on available checklists:
- adding Phycobank
- adding default GBIF checklists
Andreas Kohlbecker
03:05 PM Revision 1c6357ca (utis-core): deleting obsolte GBIFBetaBackboneClient
Andreas Kohlbecker
02:59 PM Revision c68ea3cc (utis-core): exteding and cleaning the default checklists for the GBIF client
Andreas Kohlbecker
02:52 PM Revision 62a27c8f (utis-core): deleting obsolte GBIFBetaBackboneClient
Andreas Kohlbecker
02:39 PM task #8363: PESI SOAP service seems to return duplicate records
Hi Anderas, I added you to this ticket as watcher since this could be an issue wit the data delivery to VLIZ Andreas Kohlbecker
02:36 PM task #8363 (Worksforme): PESI SOAP service seems to return duplicate records
see
~~~
http --timeout 600 :8081/search 'providers==pesi' 'query==Crepis foetida' searchMode==scientificNameLike...
Andreas Kohlbecker
02:35 PM Revision 2e351aa3 (utis-core): ref #6151 implementing pager in GBIF client and fixing problems with like search
Andreas Kohlbecker
02:33 PM feature request #6213 (Resolved): use separate tempfolder per store updater
Andreas Kohlbecker
02:23 PM bug #8129: Load images asynchronously in media details view
> This also holds for the image gallery view if "show thumbnails" is switched on (but hopefully there only thumbnail ... Patrick Plitzner
02:19 PM bug #8129 (Resolved): Load images asynchronously in media details view
Patrick Plitzner
02:18 PM Revision ccf1adbd (taxeditor): ref #8129 i18n
Patrick Plitzner
02:08 PM Revision 47c992a7 (taxeditor): ref #8129 Fix image disposing
- refactoring Patrick Plitzner
01:06 PM Revision c5ce9799 (utis-webapp): ref #8362 alowing to specify new unknown sub checklists
Andreas Kohlbecker
01:04 PM feature request #8362 (Closed): GBIFBackboneClient offers too vast amount of subchecklists
Andreas Kohlbecker
01:03 PM Revision a70f009c (utis-core): ref #8362 limiting detault set of gbif sub checklists and thus spedding up startup time
- also implementing like search Andreas Kohlbecker
12:48 PM Revision ca1b4808 (taxeditor): ref #8129 Load images asynchronously in media details view
Patrick Plitzner
08:09 AM Revision 8b2071a3 (cdmlib): ref #8283 Add media uuids to term dto
- fix HQL response handling for left outer joins Patrick Plitzner
08:07 AM Revision f3b620c8 (utis-core): store updater thread wirth minimus priority
Andreas Kohlbecker

07/10/2019

11:12 PM feature request #8362 (Closed): GBIFBackboneClient offers too vast amount of subchecklists
The GBIFBackboneClient fetches all 45400 sub checklists. This makes the capabilities response extremely unusable and ... Andreas Kohlbecker
10:10 PM Revision 0470eeac (utis-webapp): better log folder detection
Andreas Kohlbecker
10:09 PM Revision f92a98aa (utis-core): ref #6213 separate tempfolder per store updater - creating missing tmp folder
Andreas Kohlbecker
06:20 PM Revision c70386c0 (utis-core): ref #6213 separate tempfolder per store updater
Andreas Kohlbecker
06:20 PM Revision 84ee3f65 (utis-webapp): better logfile names
Andreas Kohlbecker
06:19 PM Revision a3528828 (utis-webapp): removing logfiles
Andreas Kohlbecker
06:19 PM Revision 2f86c850 (utis-webapp): removing logfiles
Andreas Kohlbecker
05:50 PM Revision 9d3d4e28 (utis-webapp): webapp context specific logfiles and logging of web requests
Andreas Kohlbecker
05:48 PM Revision 2f0b034a (utis-core): modernizing logging -> log4j2
Andreas Kohlbecker
03:08 PM Revision 1d603ffa (utis-webapp): reenabling RollingFile Logger (/var/log/jetty8/utis.log)
Andreas Kohlbecker
03:06 PM Revision 03b34296 (utis-core): ref #6151 paging of scientificNameLike and vernacularNameLike search modes in Phycobank client by basing on new common abstract cdm server client which is now also used for the BgbmEditClient
Andreas Kohlbecker
12:46 PM Revision 044553f6 (utis-core): ref #6151 paging of scientificNameLike and vernacularNameLike search modes in BgbmEditClient client
Andreas Kohlbecker
08:51 AM Revision 1a1fb1f0 (utis-core): ref #6151 paging of scientificNameLike and vernacularNameLike search modes in PLAZI client
Andreas Kohlbecker
08:44 AM Revision 54c8f6e1 (utis-core): ref #6151 paging of scientificNameLike and vernacularNameLike search modes in EUNIS client
Andreas Kohlbecker

07/09/2019

11:16 PM bug #6151: implement pager for search service
the paging mechanism for the WoRMS and PESI clients is implemented.
The PESI SOAP service however seems to return ...
Andreas Kohlbecker
11:13 PM Revision 6fd7dc60 (utis-core): ref #6151 paging of scientificNameLike and vernacularNameLike search modes in PESI client
Andreas Kohlbecker
10:48 PM feature request #8360 (Worksforme): paging results of /classification/{taxonId}/children webservice
The WoRMS and PESI webservices only return the first 50 taxa. It is needed to use the offset parameter to obtain all ... Andreas Kohlbecker
10:44 PM Revision 8edd1056 (utis-core): ref #6151 paging of scientificNameLike and vernacularNameLike search modes in WoRMS client
Andreas Kohlbecker
05:31 PM Revision 236f847c (utis-webapp): ref #6151 pager parameters in UtisController - 2
Andreas Kohlbecker
05:30 PM Revision 11ca8ad3 (utis-core): ref #6151 pager parameters TnrMsg
Andreas Kohlbecker
05:24 PM Revision a6d66952 (utis-webapp): ref #6151 pager parameters in UtisController
Andreas Kohlbecker
05:03 PM Revision e34c2dfb (utis-core): ref #6151 updating PESIClient to latest SOAP api
Andreas Kohlbecker
04:37 PM task #8359 (Closed): Update WoRMS client adapter
Andreas Kohlbecker
01:56 PM task #8359 (Resolved): Update WoRMS client adapter
Applied in changeset commit:utis-core|f9e3e79e7fd8009ed3c8353d032b028086321f34. Andreas Kohlbecker
01:52 PM task #8359 (Closed): Update WoRMS client adapter
The SOAP API of Aphia has changed Andreas Kohlbecker
04:31 PM Revision 26759d99 (utis-core): ref #8357 initial steps in implementing DiatomBase as subServiceProvider in the WoRMS client
Andreas Kohlbecker
01:52 PM Revision f9e3e79e (utis-core): fix #8359 updating the WoRMS client adapter and fixing a couple of problems
Andreas Kohlbecker
12:07 PM Revision 2b66b2b7 (utis-core): better loggin in Neo4jStoreUpdater
Andreas Kohlbecker
12:07 PM Revision 1a5bb017 (utis-core): better loggin in GBIFBackboneClient
Andreas Kohlbecker
12:00 PM feature request #8357: implement client adapter for diatom base
Diatom base is fully integrated into WoRMS served throgh the same system.
The search form for DiatomBase uses in t...
Andreas Kohlbecker
11:42 AM Revision 8bf3f34e (utis-webapp): fixing excludedClients startup option
Andreas Kohlbecker
11:22 AM feature request #8356 (In Progress): Algae Names Index - implementation
Andreas Kohlbecker
11:12 AM feature request #8358 (Duplicate): Show name type only if rank is higher than species
Andreas Kohlbecker
10:44 AM feature request #8358: Show name type only if rank is higher than species
this seems like duplicate of #7690 Andreas Kohlbecker
10:39 AM feature request #8358 (Duplicate): Show name type only if rank is higher than species
Show name type only if rank is higher than species in Vaadin.
This might enhance usability of the type section for...
Wolf-Henning Kusber
09:18 AM Revision ccf7d82c (utis-webapp): introducing dev mode system properties and documentation
Andreas Kohlbecker
09:17 AM Revision 48c3d118 (utis-core): renaming dev mode system property 'skipStoreUpdating'
Andreas Kohlbecker
09:16 AM Revision df93a7b0 (utis-core): ref #8355 switching PhycobanlClient to production server
Andreas Kohlbecker
08:56 AM feature request #8355 (Resolved): implement client adapter for phycobank
Applied in changeset commit:utis-core|ad30a5f15e02eab30f50c2f9c598860ab822d6d5. Andreas Kohlbecker
08:55 AM Revision ad30a5f1 (utis-core): fix #8355 implementing phycobank client adapter
Andreas Kohlbecker

07/08/2019

03:45 PM feature request #8357 (Closed): implement client adapter for diatom base
example requests:
~~~
http --timeout 600 :8081/search 'providers==worms[diatombase]' 'query==Eunotia can' searchM...
Andreas Kohlbecker
03:42 PM feature request #8356 (In Progress): Algae Names Index - implementation
In contrast to the original concept considerations for an index (#6184), we have chosen a more straight forward solut... Andreas Kohlbecker
03:34 PM feature request #8355 (Closed): implement client adapter for phycobank
example requests:
* http :8081/search providers==bgbm-phycobank\[phycobank\] 'query==Navicula*' searchMode==scient...
Andreas Kohlbecker
03:14 PM Revision b0cdc514 (cdm-dataportal): initializing variable
Andreas Kohlbecker
03:05 PM Revision 40360e37 (cdm-dataportal): adapting tests to modified portal code
Andreas Kohlbecker
02:10 PM Revision 25201777 (cdm-dataportal): ref #8320 fixing buggy implementation of icon links to references in theme function
Andreas Kohlbecker
02:08 PM Revision 5f188298 (cdm-dataportal): ref #6380 proper de-duplication of type designations
Andreas Kohlbecker
01:00 PM feature request #8352 (Closed): name page: show nomenclatorical acts
Yes, closed now. Wolf-Henning Kusber
12:05 PM feature request #8352: name page: show nomenclatorical acts
So we can close this ticket? Andreas Kohlbecker
12:55 PM feature request #8351: name page: show type designations with map
The map is now being suppressed if there are no points to show, Andreas Kohlbecker
12:53 PM Revision 25f440dc (cdm-dataportal): ref #8351 supressing specimen map in case of no location points
Andreas Kohlbecker
12:04 PM feature request #8354 (Closed): taxonomic registration search by name finds also typifications for this name
Andreas Kohlbecker
11:17 AM feature request #8354: taxonomic registration search by name finds also typifications for this name
Name types for genera can be found by entering the name (fake entry for "Phacus"). Ticket might be closed (but see Pl... Wolf-Henning Kusber
11:02 AM task #8201: test all delete functionality in the RegistrationUI
Wolf-Henning Kusber wrote:
> Article not linked to any registration can be deleted without problem.
... but is no...
Wolf-Henning Kusber
10:50 AM task #8201: test all delete functionality in the RegistrationUI
Delete button is available for references with registrations. Trying to delete (which realy does not any sense) produ... Wolf-Henning Kusber
10:43 AM task #8201: test all delete functionality in the RegistrationUI
Article not linked to any registration can be deleted without problem. Wolf-Henning Kusber
10:36 AM task #8201: test all delete functionality in the RegistrationUI
Saved specimen type in Registration (preparation): full functionality.
Saved name specimen type in Registration (pre...
Wolf-Henning Kusber

07/05/2019

11:04 PM Revision f9e8f532 (cdmlib): minor in cdm light export
Katja Luther
10:14 PM Revision c0babef0 (cdmlib): revert condensed distribution string and some performance issues in cdm light
Katja Luther
08:19 PM feature request #8352: name page: show nomenclatorical acts
Example for checking (including data cleaning issues to be solved by whk):
Achnanthes austriaca
name is not regis...
Wolf-Henning Kusber
12:00 AM feature request #8352: name page: show nomenclatorical acts
please review Andreas Kohlbecker
07:58 PM feature request #8354: taxonomic registration search by name finds also typifications for this name
Lectotypes/Epitypes of names are found by th name. Issue solved.
For name types of rank=genus and higher no data a...
Wolf-Henning Kusber
12:02 AM feature request #8354 (Resolved): taxonomic registration search by name finds also typifications for this name
done. please review Andreas Kohlbecker
07:33 PM feature request #8351: name page: show type designations with map
Sorry, an issue for georeferences not entered. Please see:
Eunotia tauntoniensis Hust. Type: United States of Americ...
Wolf-Henning Kusber
11:57 AM feature request #8351: name page: show type designations with map
Works fine, ticket can be closed. Wolf-Henning Kusber
12:02 AM feature request #8351: name page: show type designations with map
please review Andreas Kohlbecker
02:08 PM Revision 0a7237ca (cdmlib): add condensed distribution string to cdm light export
Katja Luther
02:06 PM Revision a0e2b61c (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther
02:05 PM Revision 068072a1 (cdmlib): smaller changes in abcd import
Katja Luther
11:09 AM Revision d1efd1c1 (cdmlib): ref #8248, #6774 Add top level term evaluation to test
Patrick Plitzner
09:15 AM Revision f61ab127 (cdmlib): fix dummy line in cdmlight export simple facts table
Katja Luther
12:24 AM Revision d1b223ad (cdmlib): addinional RegistrationService test and a bit of cleaning up
Andreas Kohlbecker

07/04/2019

10:40 PM Revision 0fb7c9e1 (cdmlib): ref #8352 controller and service to find registrations by name
Andreas Kohlbecker
10:40 PM Revision 54e11d53 (cdmlib): ref #8354 implenting registration serch by taxonUUIDs which also covers typedesignations
Andreas Kohlbecker
10:40 PM Revision 5c530881 (cdmlib): RestrictionConverter converts uuid strings to UUID objetcs which have beed passed as json value
Andreas Kohlbecker
10:40 PM Revision 60ef4839 (cdmlib): cleaning up controller code
Andreas Kohlbecker
10:39 PM feature request #8352 (Resolved): name page: show nomenclatorical acts
Applied in changeset commit:cdm-dataportal|efff6ee1db489abd192b1193e652f25978fc2441. Andreas Kohlbecker
07:06 PM feature request #8352 (Closed): name page: show nomenclatorical acts
show Registrations on the name page Andreas Kohlbecker
10:39 PM feature request #8351 (Resolved): name page: show type designations with map
Applied in changeset commit:cdm-dataportal|14076b88ce598053035a48076f0a8f0af5c99cd3. Andreas Kohlbecker
06:59 PM feature request #8351 (Closed): name page: show type designations with map
show the name type and specimen type designations on the name page. In case the type specimens are having location da... Andreas Kohlbecker
10:38 PM Revision efff6ee1 (cdm-dataportal): fix #8352 name page showing registrations
Andreas Kohlbecker
09:17 PM feature request #8354 (Closed): taxonomic registration search by name finds also typifications for this name
The search for Registrations via the classification graph misses finding registrations with are only associated with ... Andreas Kohlbecker
07:18 PM bug #8353 (New): nomenclatural and bibliographic in-reference displayed
The nomenclatural author team is suplemented by the bibliographical author team, this is misleading.
Example: http...
Wolf-Henning Kusber
07:01 PM Revision 14076b88 (cdm-dataportal): fix #8351 showing type designations and map in name page
Andreas Kohlbecker
06:20 PM Revision 94a882ee (cdm-dataportal): ref #6380 fixing regression
Andreas Kohlbecker
05:40 PM Revision 84673358 (cdmlib): ref #8248, #6774 Adapt tests
Patrick Plitzner
05:39 PM Revision 016e854b (cdmlib): ref #6774 Export reference uuid
Patrick Plitzner
03:18 PM feature request #8256 (In Progress): Show all status preferences as table
there is a table of all area specific status preferences on the admin distribution preference page. It is possible to... Katja Luther
03:14 PM Revision 198c9340 (taxeditor): ref #8256: add table of all status preferences in preference page
Katja Luther
02:18 PM Revision d4e4df3f (cdmlib): ref #8248 Check for existing media and references
Patrick Plitzner
02:11 PM bug #6380: typedesignations missing in homotypic group
please review, e.g. at the example of http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/a6... Andreas Kohlbecker
02:09 PM bug #6380 (Resolved): typedesignations missing in homotypic group
Applied in changeset commit:cdm-dataportal|b059b449f976cd7e198a3e21c05e38fb038ba1eb. Andreas Kohlbecker
02:09 PM Revision b059b449 (cdm-dataportal): fix #6380 collecting all type designations of the whole synonymy group
Andreas Kohlbecker
01:43 PM Revision 98dab2ca (taxeditor): Merge branch 'hotfix/5.7.4'
jenkins
01:29 PM Revision 4059e0ea (cdmlib): ref #8248, #6774 Fix order of term import
- add top level term property to import/export Patrick Plitzner
01:29 PM Revision 81198ab4 (cdmlib): ref #8248 Fix possible NPE
Patrick Plitzner
01:29 PM Revision 71e60ad9 (cdmlib): ref #6774 Move recursive model export to util class
Patrick Plitzner
01:27 PM Revision a63ffc14 (cdmlib): adding AnnotationType to getEmptyDefinedTermBase()
Andreas Kohlbecker
01:17 PM bug #8349 (Closed): NPE in ParseHandler when parsing name without nomencl reference
Tested local hotfix branch. Created a new taxon and, in the name editor, added and edited misapplications and synonym... Patrick Plitzner
11:55 AM bug #8349 (Resolved): NPE in ParseHandler when parsing name without nomencl reference
please review, we need an hotfix because this error is always thrown if someone wants to create a new name without th... Katja Luther
11:51 AM bug #8349 (Closed): NPE in ParseHandler when parsing name without nomencl reference
when parsing name without nomenclatural reference the following NPE is thrown:
~~~ text
Caused by: java.lang.Null...
Katja Luther
12:23 PM feature request #8283 (Resolved): Allow adding media to terms in taxeditor
this seems to work now. (the details view is still empty when changing to referencing objects view, but adding the me... Katja Luther
12:06 PM Revision 76c739e8 (taxeditor): fix NPE in ParseHandler
Katja Luther
12:01 PM bug #8347 (Closed): point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
Andreas Kohlbecker
09:50 AM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
The isohypse is very helpfull.
Just a minor issue remaining, when trying to zoom into Berlin this is easy and fast...
Wolf-Henning Kusber
12:01 PM feature request #8350 (Closed): Search dialog for named areas should work with abbreviations
The search dialog for named areas should be configurable whether the seach should be over the label, or one of the ab... Katja Luther
11:48 AM Revision 9ce386b8 (taxeditor): fix NPE in ParseHandler
Katja Luther
11:34 AM feature request #8346 (Closed): Curators and admins can edit arbitrary Annotations (Notes)
Selecting no term type is ok. These annotations are handled as untyped.
The new termtype 'Public Note' needs to be...
Andreas Kohlbecker
09:59 AM feature request #8346: Curators and admins can edit arbitrary Annotations (Notes)
Fields are implemented. Additional field can be added.
Question: should we take one entry as default (e.g. edition...
Wolf-Henning Kusber
10:54 AM feature request #7620 (Closed): RegistrationSearch implemented with Reference filter
Andreas Kohlbecker
09:33 AM feature request #7620: RegistrationSearch implemented with Reference filter
Perfectly solved! This enhances the usabiliy of PhycoBank significantly.
Search functionality is available for
st...
Wolf-Henning Kusber

07/03/2019

06:32 PM Revision b654a866 (cdm-dataportal): centralizing ckeck for Java-script developer mode
Andreas Kohlbecker
06:19 PM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
nicely done:
our example with NZ and DE: Planothidium victori:
http://test.e-taxonomy.eu/dataportal/preview/phyco...
Wolf-Henning Kusber
06:05 PM bug #8347: point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
issue solved, please review Andreas Kohlbecker
04:02 PM bug #8347 (Resolved): point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
Applied in changeset commit:cdm-dataportal|95aba8b561b3695d047b50a25a24fc41f1f83b32. Andreas Kohlbecker
04:00 PM bug #8347 (Closed): point map zooms to wrong area when using sphericalMercator maps like OpenTopo OSM etc.
example:
* https://www.phycobank.org/cdm_dataportal/taxon/6e0895b4-64ee-4b1a-ba87-403ee7888f94
* http://test.e-t...
Andreas Kohlbecker
05:59 PM Revision d30b89de (cdm-dataportal): replacing fixed background color yellow by class attribute 'row-active'
Andreas Kohlbecker
04:47 PM feature request #7620: RegistrationSearch implemented with Reference filter
see above. The filter is not working.
With the given search strings all published registrations from new to old are ...
Wolf-Henning Kusber
12:57 PM feature request #7620: RegistrationSearch implemented with Reference filter
The test server was not up to date. The problem which was causing this is fixed now. Please test again. Andreas Kohlbecker
09:44 AM feature request #7620: RegistrationSearch implemented with Reference filter
Field "Publication" available,
search functionality not given.
"Baikal" gives back Baikal-Taxa + African etc. taxa
...
Wolf-Henning Kusber
04:31 PM bug #8337: internal error, name type status missing, reference in name type not updated
The duplicate type (first one) cannot be deleted in Vaadin, because it is not possible to open the record and to get ... Wolf-Henning Kusber
03:16 PM bug #8337 (Worksforme): internal error, name type status missing, reference in name type not updated
This problem can not be reproduced on the test system. The duplicate name type designations can be removed by deletin... Andreas Kohlbecker
04:28 PM Revision 9f567421 (taxeditor): Updated version in pom / project files to taxeditor version : 5.7.4 and cdmlib version : 5.7.0
jenkins
04:02 PM Revision 40308723 (cdm-dataportal): avoiding php warning due to uninitialized variable
Andreas Kohlbecker
04:01 PM Revision 95aba8b5 (cdm-dataportal): fix #8347 fixing wrong projection transformation for data maps
Andreas Kohlbecker
02:16 PM Revision 738771f2 (cdm-dataportal): wrapping 'no associated taxon' message in div to allow styling
Andreas Kohlbecker
02:15 PM Revision 7ff3b0ef (cdm-dataportal): wrapping 'no associated taxon' message in div to allow styling
Andreas Kohlbecker
12:49 PM Revision 6403c1de (cdmlib): code cleaning
Katja Luther
11:11 AM Revision 49d17d7d (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.9.0-SNAPSHOT
jenkins
10:27 AM Revision 600fbce8 (cdm-webapp): changing wp5.e-taxonomy.eu/mavenrepo to cybertaxonomy.eu/mavenrepo
Andreas Kohlbecker

07/02/2019

06:18 PM feature request #8346: Curators and admins can edit arbitrary Annotations (Notes)
please review
(the solution is not a beauty but it is working!)
Andreas Kohlbecker
06:17 PM feature request #8346 (Resolved): Curators and admins can edit arbitrary Annotations (Notes)
Applied in changeset commit:cdm-vaadin|c02fc11ae73482b118a48cfb4fca97e7302bda1f. Andreas Kohlbecker
05:58 PM feature request #8346 (Closed): Curators and admins can edit arbitrary Annotations (Notes)
The FilterableAnnotationsField should offer the option to edit arbitrary notes (annotations) in all views where it is... Andreas Kohlbecker
06:17 PM Revision c02fc11a (cdm-vaadin): fix #8346 flexible editing of annotations for Curator and Admin roles
Andreas Kohlbecker
04:51 PM Revision 1cdc1f46 (cdmlib): using CleanSweepInsertLoadStrategy in SecurityTest
Andreas Kohlbecker
04:42 PM Revision 1c2aeca4 (cdmlib): adding missing REGISTRATION* tables to the ClearDBDataSet.xml
Andreas Kohlbecker
04:17 PM Revision 5f71008d (cdmlib): using CleanSweepInsertLoadStrategy in DerivedUnitConverterIntegrationTest
Andreas Kohlbecker
04:14 PM feature request #7620: RegistrationSearch implemented with Reference filter
ready for review Andreas Kohlbecker
04:14 PM Revision c5089cec (cdm-dataportal): ref #7620 reference filter options for the Registration search
Andreas Kohlbecker
04:08 PM Revision 824ae003 (cdm-dataportal): ref #8320 fixing tab color specificity probelm
Andreas Kohlbecker
03:19 PM Revision 88131480 (cdm-dataportal): ref #8287 re-enabling type status filter multiple options
Andreas Kohlbecker
03:18 PM Revision bb5a542c (cdm-dataportal): typo
Andreas Kohlbecker
03:15 PM feature request #7621 (Closed): registration search also covers typified names
fully solved Andreas Kohlbecker
03:14 PM feature request #8330 (Closed): RegistrationDao search method
fully solved Andreas Kohlbecker
03:11 PM bug #8287: RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
please review Andreas Kohlbecker
03:10 PM bug #8287 (Resolved): RegistrationServiceImpl.page( .... Collection<UUID> typeDesignationStatusUuids ... ) fails when NULL and UUIDs are passed
Applied in changeset commit:cdmlib|c40f420c355ee29b3b31e575c8d630f59cf55c0e. Andreas Kohlbecker
03:10 PM Revision c40f420c (cdmlib): fix #8287 implementing support for null type status as filter value in Registration service
Andreas Kohlbecker
02:31 PM Revision f54d835b (cdmlib): Revert "adding missing MatchMode in createRestriction()"
This reverts commit 1eca13fafa584494a9300c1a6844d435ca5ae897. Andreas Kohlbecker
02:07 PM Revision c1f34da9 (cdmlib): ref #8248 Add character to export (partially)
Patrick Plitzner
01:44 PM feature request #8345 (Closed): RegistrationListView: filter option for publication
Andreas Kohlbecker
01:42 PM feature request #8345 (Resolved): RegistrationListView: filter option for publication
Applied in changeset commit:cdm-vaadin|c609114c696fe3512d2c485b9d4e6a1a52dafac9. Andreas Kohlbecker
01:41 PM feature request #8345 (Closed): RegistrationListView: filter option for publication
extend the existing filters by a text field for publication citation patterns Andreas Kohlbecker
01:43 PM bug #7885 (In Progress): registration search by name finds also typifications for this name
Andreas Kohlbecker
01:43 PM bug #7885 (Closed): registration search by name finds also typifications for this name
Andreas Kohlbecker
12:59 PM bug #7885 (In Progress): registration search by name finds also typifications for this name
Andreas Kohlbecker
01:42 PM Revision c609114c (cdm-vaadin): fix #8345 adding filter text field for publications in RegistrationListView
Andreas Kohlbecker
01:37 PM Revision 44787444 (cdmlib): ignoring RedmineRegistrationMessageServiceTest since RedmineRegistrationMessageService is going to be removed
Andreas Kohlbecker
01:34 PM Revision 1eca13fa (cdmlib): adding missing MatchMode in createRestriction()
Andreas Kohlbecker
01:05 PM bug #8327 (Duplicate): record with publication date is competing with curation status, set to preparation or curation
closing as duplicate Andreas Kohlbecker
11:48 AM Revision ff454f55 (cdm-dataportal): ref #8182: use bgbm-import instead of ip address
Katja Luther
11:18 AM feature request #8342: shift field Field number
This is potentially easy to fix, thus i am setting this to HIGHEST. If it is more time consuming we should downgrade ... Andreas Kohlbecker
11:01 AM Revision f60b52c4 (cdm-dataportal): ref #8182: Dna should be DNA
Katja Luther
10:41 AM Revision c7637ad4 (cdmlib): fix failing test (add anywher to createRestrictions)
Katja Luther

07/01/2019

06:52 PM Revision f69d6df9 (cdmlib): ref #8330 removing unused and obsolete service methods which are replaces by the new one
Andreas Kohlbecker
06:35 PM Revision 69fd8336 (cdmlib): ref #7620 rest service /registrationDTO/find with filter string for references
Andreas Kohlbecker
06:32 PM Revision 58cbdc8e (cdmlib): ref #7620 filtered registration search implemented with filter string for references
Andreas Kohlbecker
05:07 PM Revision fbe02574 (cdmlib): ref #8330 ref #7885 removing confusing typo in test data
Andreas Kohlbecker
04:31 PM Revision bae3fd55 (cdmlib): ref #7885 tests for registration search by typified name and implementing order by
Andreas Kohlbecker
03:28 PM Revision 9ccf877c (cdmlib): ref #8330 dao method for filtered registration search implemented: reprocduces existing functionality plus extended name search ref #7885
Andreas Kohlbecker
02:45 PM feature request #6709 (Closed): Do not show UUID on media page
Andreas Kohlbecker wrote:
> e.g.: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/media/d0b...
Patrick Plitzner
02:42 PM feature request #6709: Do not show UUID on media page
e.g.: http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/media/d0bf650c-4cc6-4dfe-bb2f-a289b426... Andreas Kohlbecker
10:45 AM feature request #6709 (Feedback): Do not show UUID on media page
Andreas Kohlbecker wrote:
> HI Patrick, is this issue about the UUID being used as replacement for missing title att...
Patrick Plitzner
01:51 PM Revision c2447263 (cdmlib): ref #8330 completing documentation regarding wildcards and fixing bug with MatchMode LIKE when using Restrictions
Andreas Kohlbecker
01:51 PM Revision 84cd43e7 (cdmlib): ref #8330 documentation for RegistrationService.page and RegistrationWorkingsetService.pageDTO
Andreas Kohlbecker
01:51 PM Revision d0bdcc3f (cdmlib): ref #8330 implementing tests for RegsitrationService.page and RegistrationWorkingsetService.pageDTO
Andreas Kohlbecker
01:43 PM Revision caa17126 (cdmlib): ref #8344: add dummy line in empty simple facts table
Katja Luther
01:42 PM feature request #8344 (Closed): Cdm light export: add dummy line in simple facts table
Hallo Katja,
...
Dann etwas für den Release, wenn’s geht:
Ich verwende die SimpleFact Tabelle im weiteren Verlauf ...
Katja Luther
01:41 PM feature request #8294 (Resolved): Make display of ID in source and ID Namespace configurable
please review Katja Luther

06/28/2019

02:05 PM feature request #8320 (Closed): Links to reference page as appendend icon instead of having the whole citation as link
done Andreas Kohlbecker
02:04 PM feature request #8320 (Resolved): Links to reference page as appendend icon instead of having the whole citation as link
Applied in changeset commit:cdm-dataportal|2ffe4d59b3a9ac3747f0b94a761adf3ea0f6de59. Andreas Kohlbecker
02:04 PM Revision 2ffe4d59 (cdm-dataportal): fix #8320 links to references as appended icon & custom icon font set
- theme method extended by second doIconLink attribute
- all usages of the theme methods with icon link except for r...
Andreas Kohlbecker
01:17 PM feature request #7620 (Resolved): RegistrationSearch implemented with Reference filter
Applied in changeset commit:cdm-dataportal|384ff2ba6f98d8d869093ff4be0fea7eb81d7a0e. Andreas Kohlbecker
01:16 PM Revision 384ff2ba (cdm-dataportal): fix #7620 links to references as appended icon link & new custom icon fontset
- theme method extended by second doIconLink attribute
- all usages of the theme methods with icon link except for r...
Andreas Kohlbecker
01:05 PM Revision f45c46ef (cdm-dataportal): updating information on compass version
Andreas Kohlbecker
11:47 AM Revision a4f3f99c (taxeditor): ref #8294: add preference page for id in namespace and namespace in source
Katja Luther

06/27/2019

07:13 PM bug #8343 (Rejected): potential timezone problem in application stack
I don't think that we are having a timezone shift problem since the date is stored in the db as 2018-06-11 22:00:00. ... Andreas Kohlbecker
07:07 PM bug #8343 (Closed): potential timezone problem in application stack
Ist denn genau definiert, um welche Zeitzone es sich handelt? Ich frage auch weil auf https://www.phycobank.org/cdm_d... Andreas Kohlbecker
07:12 PM task #8118: Update MySQL drivers
**The proper solution it the timezone problem is documented at MySqlFaq#The-server-time-zone-value-is-unrecognized** Andreas Kohlbecker
07:03 PM feature request #8245 (Resolved): Improve representation of DescriptionElementBase.timeperiod
done, for testing you can use for example http://edit.test/d7/reference_int/cdm_dataportal/taxon/c246856f-c03e-4cb7-a... Andreas Kohlbecker
05:27 PM task #7269 (Closed): Use redmine as message hub for submitter curator communication
even if it has been completely implemented this feature has been rejected afterwards Andreas Kohlbecker
05:26 PM task #7269 (Rejected): Use redmine as message hub for submitter curator communication
Andreas Kohlbecker
05:21 PM Revision ef6a4ce9 (cdm-dataportal): ref #8245 stripping trailing zeros in description element time priods, with test
Andreas Kohlbecker
05:19 PM Revision ee5d420b (cdm-dataportal): ref #4372 page elements DupalBlock and FeatureBlock compatible also with zen theme - solving problems
Andreas Kohlbecker
05:00 PM feature request #4372 (In Progress): Selenium PortalPage class also suitable for zen-basetheme
Andreas Kohlbecker
04:59 PM Revision 1b1c2bc9 (cdm-dataportal): ref #4372 page elementd DupalBlock and FeatureBlock compatible also with zen theme
Andreas Kohlbecker
02:26 PM task #7296 (Closed): externalize redmine api key
all resources removed Andreas Kohlbecker
02:26 PM Revision 8ec6c716 (cdmlib): ref #7296 removing all config files related to the RemineMessagingService since this has been dropped completely
Andreas Kohlbecker
02:26 PM Revision 76eaf322 (cdmlib): ref #8321 cleaning up cotroller code
Andreas Kohlbecker
02:23 PM Revision b74a2730 (taxeditor): ref #7920: fix delete of preferences
Katja Luther
02:23 PM Revision 605d9128 (taxeditor): minor - avoid NPE
Katja Luther
02:20 PM task #4177 (Resolved): display of name relationships in synonymy broken
I detached the task #5856: "[DISCUSS] Consider implementing additional name relationships" from this issue so that we... Andreas Kohlbecker
02:14 PM Revision 276ef31b (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
Katja Luther
02:12 PM Revision ef8972ee (taxeditor): smaller changes for abcd imports in tax editor
Katja Luther
02:11 PM Revision d9fabe96 (cdmlib): smaller changes in ABCD import - continue
Katja Luther
02:10 PM Revision 5479041f (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther
02:09 PM Revision f769c20b (cdmlib): smaller changes in ABCD import
Katja Luther
10:34 AM feature request #7408 (Feedback): [E+M] Support for preferred common names in data portal
Is this ticket still relevant. I seem to remember that the preferred common names are currently in discussion. Andreas Kohlbecker
10:25 AM bug #8050 (Closed): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Okay, da offene Punkt auch mit Workflows zu tun hat, sollten wir den kommende Woche diskutieren. Schließe wie besproc... Wolf-Henning Kusber
09:04 AM bug #8050 (Resolved): Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Wolf-Henning Kusber wrote:
> Das Problem in !#11 und !#12:
>
> Konkret möchte ich für einen existierenden Namen, ...
Andreas Kohlbecker
09:08 AM Revision 430b5a6c (cdmlib): ref #8182: minor
Katja Luther

06/26/2019

06:38 PM Revision 44707ee3 (cdm-dataportal): ref #6316 refactoring for cleaner original source code - bug fix
Andreas Kohlbecker
05:52 PM feature request #6709 (Resolved): Do not show UUID on media page
done Andreas Kohlbecker
05:11 PM feature request #6709: Do not show UUID on media page
hi Patrick, could you please answer on my question? Andreas Kohlbecker
05:51 PM feature request #6316 (Resolved): display source references of media objects in media page
done and also test implemented. Andreas Kohlbecker
05:50 PM Revision 20e02fff (cdm-dataportal): test for media page title ref #6709 and original source display ref #6316
Andreas Kohlbecker
05:28 PM Revision 50d9206b (cdm-dataportal): ref #6709 better fallback strategy for media page titles
Andreas Kohlbecker
05:09 PM Revision 27bceb70 (cdm-dataportal): ref #6316 fixing two layout issues:
- html was processes as plain text
- removing URI from titlecache when type is WebPage
Andreas Kohlbecker
04:59 PM bug #8321: Namepage shows wrong taxa as related to the name
Both Eunotia krammeri with different Author teams are not mixed anymore. The described problem is solved and the tick... Wolf-Henning Kusber
04:49 PM feature request #8342: shift field Field number
Avoid overlap with collection date fields Wolf-Henning Kusber
04:47 PM feature request #8342 (Closed): shift field Field number
see screen shot
![](picture731-1.png)
Wolf-Henning Kusber
04:46 PM Revision bb93d5d1 (cdm-dataportal): ref #6316 refactoring for cleaner original source code
Andreas Kohlbecker
04:33 PM feature request #8341 (New): status without scroll bar

![](picture563-1.png)
reference detail not realy needed in our project. This could be as small as possible. It w...
Wolf-Henning Kusber
03:38 PM bug #8050: Create blocking registrations for un-registered names which are to be used in nomenclatural acts
Das Problem in !#11 und !#12:
Konkret möchte ich für einen existierenden Namen, z.B. "Micrasterias" einen (Namens-...
Wolf-Henning Kusber
02:13 PM Revision d2be662d (cdmlib): ref #8182: accession number is required in webservice
Katja Luther
01:59 PM task #5857 (Resolved): show nomenclatural status for for representations of TaxonName
Andreas Kohlbecker wrote:
> we (Andreas & Henning) decided to move the footnote in front of the relationship label d...
Andreas Kohlbecker
01:56 PM Revision 1ee58da8 (cdmlib): ref #8182: add header to failed response
Katja Luther
01:16 PM Revision ce347d23 (cdm-dataportal): ref #8182: add link to ncbi for blast result
Katja Luther
12:48 PM bug #8340 (Rejected): is accepted for Footnotes missing and with wrong index
The option "Display is accepted for ... on taxon pages when coming from a synonym link." needs to be turned on for th... Andreas Kohlbecker
12:27 PM Revision 4366f68b (cdm-dataportal): fixing Undefined variable
Andreas Kohlbecker
10:05 AM Revision b3e21c63 (cdmlib): ref #8182: handle not existing dna for accession number
Katja Luther

06/25/2019

05:46 PM Revision 4c812e71 (cdm-dataportal): ref #8182: remove local server for blast ws and add collabsible rows in specimen table and blast result table
Katja Luther
05:41 PM feature request #8304: Name page redirects to according taxon depending on query parameter
The layout settings page () now offers the following checkbox:
![](picture689-1.png)
Andreas Kohlbecker
04:47 PM feature request #8304: Name page redirects to according taxon depending on query parameter
The suggestion made in the issue description to use the name render templates to fine tune the behavior of the autore... Andreas Kohlbecker
03:47 PM feature request #8304: Name page redirects to according taxon depending on query parameter
Hallo,

ich bemerke gerade eine Veränderung in der Anzeige von Homonymbeziehungen:

Wenn ich in http://cichori...
Andreas Kohlbecker
05:37 PM Revision 14832ae9 (cdm-dataportal): ref #8304 global switch to enable the name page redirecting to taxa
Andreas Kohlbecker
04:59 PM Revision f264279e (cdm-dataportal): minor improvements regarding method documentation
Andreas Kohlbecker
02:35 PM Revision 9b9b5b41 (cdmlib): cdmlight: change area category to the area level
Katja Luther
01:39 PM Revision 833731f1 (cdmlib): ref #8248 Add feature to export (partially)
Patrick Plitzner
01:28 PM feature request #8339 (New): Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
'acceptedFor' parameter which is used by the synonym page can potentially be replaced or removed.
this parameter i...
Andreas Kohlbecker
11:18 AM bug #8338 (New): Newly created structural modifier terms are not available in details view
steps to reproduce
1. Create a character in the character editor
1. Look at the available "Structural Modifiers" ...
Patrick Plitzner
10:24 AM Revision 979d74e5 (cdmlib): ref #8248, #6774 Add character to export
- adapt test Patrick Plitzner

06/24/2019

02:48 PM Revision 2bbdfed5 (taxeditor): Add facet information to term search result composite
Patrick Plitzner
11:35 AM bug #8337 (Worksforme): internal error, name type status missing, reference in name type not updated
In the normal workflow a prelininary reference title was databased, than a new genus, a new species, than a name type... Wolf-Henning Kusber

06/21/2019

06:02 PM Revision 4c9c08a9 (taxeditor): ref #8248 Set import source citation in import wizard
Patrick Plitzner
05:59 PM Revision 82e317b8 (cdmlib): ref #8248, #6774 Add sources to import/export
Patrick Plitzner
02:18 PM Revision 2ac55f2d (cdmlib): ref #8248, #6774 Improve import/export performance
Patrick Plitzner

06/20/2019

05:27 PM Revision e9c37045 (taxeditor): ref #7589 Save matrix rows in one service call
Patrick Plitzner
02:46 PM Revision 723b8572 (taxeditor): ref #8335 minor fixes for active state evaluation
Patrick Plitzner
02:29 PM Revision ce524345 (taxeditor): ref #8335 Persist table state when dialog is closed
Patrick Plitzner
02:12 PM Revision c2e9c57b (taxeditor): ref #8335 Initially select default state + minor refactoring
Patrick Plitzner
01:27 PM Revision a8397603 (taxeditor): ref #8335 Add default state to table states
Patrick Plitzner
12:49 PM task #8336 (Duplicate): Unignore FeatureTest
Since FeatureNode and Tree was moved to term package it does not work anymore
eu.etaxonomy.cdm.io.jaxb.FeatureTest
Andreas Müller
 

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