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feature request #8357

closed

implement client adapter for diatom base

Added by Andreas Kohlbecker over 3 years ago. Updated 11 months ago.

Status:
Closed
Priority:
Highest
Category:
utis
Target version:
Start date:
Due date:
% Done:

100%

Estimated time:
Severity:
normal
Tags:

Description

example requests:

http --timeout 600 :8081/search 'providers==worms[diatombase]' 'query==Eunotia can' searchMode==scientificNameLike | jq '.query[] | .response[] | .taxon.taxonName.scientificName'

Files

picture774-1.png (260 KB) picture774-1.png Andreas Kohlbecker, 07/09/2019 12:00 PM

Related issues

Related to PhycoBank - feature request #8356: Algae Names Index - implementationIn ProgressAndreas Kohlbecker

Actions
Actions #1

Updated by Andreas Kohlbecker over 3 years ago

Actions #2

Updated by Andreas Kohlbecker over 3 years ago

Diatom base is fully integrated into WoRMS served throgh the same system.

The search form for DiatomBase uses in the background the same API as WoRMS with a specific preset. The following search settings in WoRMS provide the exact same reults as a search in DiatomBase (tested with the name "Navicula"):

Actions #3

Updated by Andreas Kohlbecker over 3 years ago

  • Description updated (diff)
Actions #4

Updated by Andreas Kohlbecker over 3 years ago

Bart Vanhoorne wote:

diatombase.org (and all other subregisters in WoRMS/Aphia http://www.marinespecies.org/subregisters.php) use a system for tagging taxa/species.
For Diatombase, this of course boils down to "limit to Bacillariophyceae, but there might be exceptions to this.
Conclusion, if you use the access point on diatombase.org (http://www.diatombase.org/aphia.php?p=webservice) you will always have the correctly tagged taxa, and don't need to apply a higher taxon as filter.

Actions #5

Updated by Andreas Kohlbecker over 3 years ago

  • Status changed from New to In Progress
  • Priority changed from New to Highest
Actions #6

Updated by Andreas Kohlbecker over 3 years ago

  • Status changed from In Progress to Closed
  • % Done changed from 0 to 100
Actions #7

Updated by Andreas Kohlbecker over 3 years ago

  • Target version set to 280
Actions #8

Updated by Andreas Kohlbecker over 3 years ago

  • Category set to utis
Actions #9

Updated by Andreas Müller 11 months ago

  • Target version changed from 280 to UTIS 1.3
Actions #10

Updated by Andreas Müller 11 months ago

  • Project changed from UTIS to EDIT
  • Category changed from utis to utis
  • Severity set to normal
Actions

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