Activity
From 11/27/2019 to 12/26/2019
12/26/2019
- 11:33 PM task #8794 (New): [PESI][Merge]+[DW] Check all SQL scripts related to merging
- Check all SQL script which are not single DB specific on Y:\BDI\PESI\sh\DBs2PESI\vCDM
- 09:12 PM Revision a12e9e83 (cdmlib-apps): ref #2104 remove fixme from unused PesiNoteSourceExport_Old
- 08:07 PM bug #8793 (New): [E+M] In-Ref authors should have full (non-abbreviated) author title without initials
- This is a E+M requirement for nom. ref. formatting
- 07:29 PM Revision dd68b822 (cdmlib-apps): ref #8508 latest changes
- 07:28 PM Revision e706b35f (cdmlib-apps): cleanup
- 07:21 PM Revision 58968197 (cdmlib-apps): ref #1444, ref #7976 improve misapplication handling in ERMS import
- 06:41 PM task #7976 (Closed): [PESI][ERMS] Erms taxon import
- 05:02 PM task #8792: Issues to have in mind for ERMS import
- Open issues from comparing SQL scripts (Y:\BDI\PESI\sh\DBs2PESI\vCDM\):
!!!! Do check again because maybe I checke... - 12:06 PM task #8792 (New): Issues to have in mind for ERMS import
- The functioning of the ERMS import (and PESI export) is explained at: [[Erms_mapping]]
## General information
O... - 01:59 PM Revision d4c6ec84 (cdmlib-apps): ref #8508 minor and cleanup
- 01:56 PM Revision 0d26082d (cdmlib-apps): ref #8509 handle new ERMS quality status "Thematic Editor"
- 01:55 PM Revision bd4c4dee (cdmlib-apps): ref #1444, #8509 fix pipeline handling in ErmsImportActivator
- 01:54 PM Revision 2a2eb365 (cdmlib-apps): ref #1444 replace tu_acctaxon by tu_accfinal
12/24/2019
- 01:52 AM Revision 8419d12a (cdmlib-apps): ref #8508 latest changes to ERMS validation
- 01:51 AM Revision 98d96cf6 (cdmlib-apps): cleanup
- 01:45 AM Revision c44a40e4 (cdmlib-apps): ref #8509 fix taxonStatus export for ERMS
12/23/2019
- 09:37 PM Revision 0cd4c1a9 (cdmlib-apps): cleanup
- 09:36 PM Revision 7373dcf3 (cdmlib-apps): ref #2717 remove publish marker and uuidMisappliedCommonName marker handling because not needed anymore
- 09:32 PM Revision ec9963cf (cdmlib-apps): ref #2717 add 2nd source to EuroMedSourceActivator
- 08:56 PM Revision ea77fefa (cdmlib-apps): ref #1444 handle missing sourceUse
- 08:31 PM Revision 4c575756 (cdmlib-apps): ref #1444 minor changes and cleanup
- 08:30 PM Revision bd1bdb28 (cdmlib-apps): ref #1444 some changes due to upgrade to ERMS v2019
- 08:28 PM Revision e4598bb4 (cdmlib-apps): ref #1444 add new ERMS source and rename old one
- 12:09 PM feature request #8441 (Closed): Add FeatureState class
- I think we can close this ticket.
- 10:00 AM Revision 5d17ab2a (cdmlib-apps): cleanup and move isIgnoreNull from base configurator to BMconfig only
- 09:58 AM Revision cb5cbca9 (cdmlib): remove ignoreNull from ImportConfiguratorBase
12/22/2019
- 11:08 PM Revision 2d7259ef (cdmlib-apps): ref #2717 some updates to PESI export
- 11:06 PM Revision e5364977 (cdmlib-apps): ref #8577 improve E+M export validation
- 11:01 PM Revision 0420a928 (cdmlib): cleanup
12/20/2019
- 04:28 PM bug #8791: Measurement units are not assigned to quantitative data in matrix
- This urgent as the current implementation creates incomplete data that needs to be repaired manually (see #8790)
- 04:17 PM bug #8791 (Closed): Measurement units are not assigned to quantitative data in matrix
- In a first quick fix we should implement it such that if the feature has exactly 1 recommended measurment unit this u...
- 04:16 PM bug #8790 (Closed): Update measurement units for existing quantitative data missing a unit
- This is how to find them:
~~~
SELECT f.id featureId, f.titleCache, mu.id unitId, mu.titleCache unit, deb.*
FROM... - 03:55 PM feature request #8789 (New): How can we semantically handle characters like "partial inflorescence arrangement - distance 1st to 2nd bract"
- This is currently a quantitative character in Cactaceae which uses
structure: partial inflorescence
Property: arr... - 03:26 PM bug #8788 (Feedback): Cloned descriptions do not show up in dataportal anymore
- Problem description:
Das Problem ist, dass hier auf die geclonten (archivierten) Specimen Descriptions verlinkt wi... - 03:01 PM feature request #8787: Improve layout for ExactValue on Description Pages
- This should only be applicable for the specimen pages themselves: http://test.e-taxonomy.eu/dataportal/preview/greece...
- 03:00 PM feature request #8787: Improve layout for ExactValue on Description Pages
- A maybe temporary example ist http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/descriptio...
- 02:56 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages
- Currently formatting is not nice:
A first suggestion from an Email:
Da sollten wir uns... - 02:59 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- Handling for Exact Value is still open, but handled now in own ticket #8787
- 10:08 AM Revision 69019789 (cdmlib): ref #8782: add isDeletable to descriptionService
- 12:31 AM Revision 4a2b3c5b (cdmlib): ref #8469 support reuse of quantitative characters in subbranches
12/19/2019
- 05:14 PM bug #8739 (Resolved): remaining issues for description detail page
- AS far as I see, this ticket is either solved or remaining issues are copied to new tickets.
Therefore I suggest c... - 05:12 PM Revision 753a8083 (cdm-dataportal): ref #8739 description page better and stylable DOM
- 05:08 PM task #8786 (Feedback): Display of mean value with min max
- 05:08 PM task #8786 (Resolved): Display of mean value with min max
> abgesehen davon, dass die Mittelwertangabe zwischen Min und Max unüblich ist, ... Eine bessere Darstellung wär...- 03:59 PM Revision 16ab19f1 (cdm-dataportal): ref #8781 first feature element starts with upper case letter - bug fix
- 03:00 PM feature request #8769 (New): Biocase import configuration should be shown when clicking on import button
- Andreas Kohlbecker wrote:
> I fear that just opening the import config dialog does not really help.
> I suggest to ... - 02:59 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I find it very useful for debugging that computed description... - 02:28 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- Andreas Kohlbecker wrote:
> I find it very useful for debugging that computed descriptions can be viewed and modifie... - 02:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> this should be possible in character matrix. I have to test this.
yes, it should be handled... - 02:35 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- this should be possible in character matrix. I have to test this.
- 11:58 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Also this one I put to current milestone for same reason as #8784
- 11:58 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- The issue is described in #8784 but I created a new ticket as it is as deleting a specimen description (which is hand...
- 02:30 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- As this is a critical issue I suggest to put it into 5.13. (5.12 is probably not possible as the task is difficult). ...
- 02:23 PM bug #8784: Deleting a specimen description not possible
- fixing the delete handling in deletehandler of the factual data view. Now the deletion of descriptions and descriptio...
- 11:57 AM bug #8784 (In Progress): Deleting a specimen description not possible
- this is already in process because I already found this problem while working on #8782
- 11:54 AM bug #8784: Deleting a specimen description not possible
- I put this into the current milestone because it is a blocker for undoing incorrect/unwanted data entries.
- 11:53 AM bug #8784 (Closed): Deleting a specimen description not possible
- Currently it seems to be impossible to delete a specimen description.
In the specimen LIST editor specimen descrip... - 02:21 PM Revision a776559e (taxeditor): ref #8784: fix deleteHandler for factual data
- 02:21 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
- Looks fine now
- 01:51 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
- Andreas Müller wrote:
> Now the semicolon is missing everywhere, it should be removed ONLY at the end:
>
Proble... - 01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
- An example can be found here: http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/taxon/8718...
- 01:19 PM feature request #8781 (Feedback): Descriptions (aggregated): futher improvements
- 01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
- Now the semicolon is missing everywhere, it should be removed ONLY at the end:
The capita... - 02:12 PM Revision bea70813 (cdm-dataportal): ref #8739 labels of CategoricalData and QuatitativeData stylable
- 01:50 PM Revision caf1ed73 (cdm-dataportal): ref #8781 restoring lost semicolons in description element string representations
- 10:20 AM Revision 3db61e83 (cdm-dataportal): ref #8739 description page: improved dom and using stylesheets instead of html tags
- 01:10 AM Revision 6f40bb03 (cdmlib): cleanup
- 01:10 AM Revision e04e5f03 (cdmlib): ref #8469 use correct handling for removeChildNode
- 12:53 AM Revision ca83d76f (cdmlib): ref #8469 add useTaxonHierarchy for PolytomousKeyGenerator
- 12:51 AM Revision e667c033 (cdmlib): ref #8469 fix remove taxon node from taxon for TaxonNode.remove()
- 12:49 AM Revision af44169e (cdmlib): cleanup
12/18/2019
- 05:03 PM Revision ad7fa57c (cdm-dataportal): ref #8739 description page: solving problems with unit display, order and spacing
- 04:38 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- I find it very useful for debugging that computed descriptions can be viewed and modified in the editor. Can't we all...
- 02:43 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
This was observed with a locally running cdmlib-remote-webapp instance configured with 700 MB of Heap:
: Delete a description included in a CdmSource should not be possible
- mail AM:
ich habe gerade DescriptionBase gelöscht (aus dem Facts View heraus), die noch verlinkt waren über eine C... - 01:24 PM bug #8780: Repair sortindex does not work on TermTree index
- This should be fixed. Please review.
- 11:57 AM bug #8780 (Resolved): Repair sortindex does not work on TermTree index
- Applied in changeset commit:cdmlib|dad659722b698863a2dee711782748b0de216a71.
- 09:16 AM bug #8780 (Closed): Repair sortindex does not work on TermTree index
- 01:11 PM Revision 7b8c575b (cdmlib): cleanup
- 01:00 PM Revision cc6c7d5e (cdmlib): cleanup
- 01:00 PM Revision 6c143263 (cdmlib): ref #8780 fix autowire issue for repository (workaround)
- 12:47 PM Revision 86f7ea85 (cdmlib): cleanup
- 12:43 PM Revision a483ffcd (cdmlib): ref #8780 test nodes recursive and generic
- 12:42 PM Revision 365cff58 (cdmlib): cleanup
- 12:41 PM Revision a2928800 (cdmlib): fix ConcurrentSessionTest testdata
- 12:21 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
- ticket complete
- 12:08 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
- Hallo Andreas,
1. am Ende der aggregated descriptions gibt es derzeit im noch ein überflüssiges Komma. Könntest du... - 12:20 PM Revision 2bc2b13e (cdm-dataportal): ref #8781 first feature element starts with upper case letter
- 12:18 PM Revision e425fd81 (cdmlib): cleanup
- 12:17 PM Revision 1d287b23 (cdmlib): ref #8780 reduce test dataset
- 12:09 PM Revision 2e5f796f (cdm-dataportal): ref #8781 removing semicolon from end of description
- 11:59 AM Revision 3076588b (cdmlib): ref #8780 add SortIndexUpdaterWrapperTest for term nodes
- 11:58 AM Revision b171b803 (cdmlib): ref #8780 cleanup SortIndexUpdaterWrapper
- 11:58 AM Revision 386112b5 (cdmlib): replace featureTreeService by termTreeService
- 11:57 AM Revision 0a165781 (cdmlib): cleanup
- 11:46 AM Revision 87aa88d6 (cdm-dataportal): ref #8739 aggregated description feature block: explainig bracketed numbers
- 11:22 AM feature request #7981 (In Progress): Add configuration UI for matrix description aggregation
- 11:21 AM Revision 6722d9a5 (cdm-dataportal): ref #8739 description page: explainig bracketed numbers
- 09:47 AM Revision 1da7de81 (cdmlib): ref #8780 cleanup
- 09:47 AM Revision dad65972 (cdmlib): fix #8780 fix term node sortindex updater (TermNode->TermRelation)
- 09:36 AM Revision 558d4b79 (cdmlib): cleanup
- 09:26 AM Revision 61cfb399 (cdmlib): cleanup
12/17/2019
- 04:01 PM Revision 01e26d23 (taxeditor): ref #7981: remove aggregation call in wizard
- 03:55 PM bug #8566 (Rejected): Recursive aggregation for common parent taxon does not work if not in data set
- This is expected behavior, not a bug IMO. However, with the UI aggregation trigger we may have more possibilities to ...
- 03:47 PM feature request #8686: Support CdmLink sources in bibliography
- An example could be shown here: http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/taxon/...
- 03:46 PM feature request #8686 (Feedback): Support CdmLink sources in bibliography
- Andreas Kohlbecker wrote:
> **Note**: The links to the taxa are having a fragment which directly focuses on the "Agg... - 03:42 PM Revision 20bfe15b (cdm-dataportal): fix #8779 harmonization of taxon display in descriptions
- 03:40 PM bug #8779 (Resolved): Description page: use render_taxon_or_name() for creating the page and description title and taxon links
- after harmonization the top of the page now looks like
If more detailed display of the ta... - 03:20 PM bug #8779 (Closed): Description page: use render_taxon_or_name() for creating the page and description title and taxon links
- in `compose_description_table()` the `render_taxon_or_name()` method must be used for portal wide consistend display ...
- 03:35 PM feature request #8777: Make visiblity of CDM Source configurable
- Andreas Müller wrote:
> ... hmm, maybe an even better solution is to show the field only if data exists. Is this pos... - 03:08 PM feature request #8777: Make visiblity of CDM Source configurable
- ... hmm, maybe an even better solution is to show the field only if data exists. Is this possible?
- 03:00 PM feature request #8777 (Resolved): Make visiblity of CDM Source configurable
- see #8688, for some projects the CDM Source should not be visible (because not used). This is similar to ID in Source...
- 03:15 PM feature request #8688 (Feedback): Make OriginalSourceBase.cdmSource visible in TaxEditor
- The current solution shows titleCache+uuid for identifiable entities. This is too much. For now we need only the titl...
- 03:12 PM feature request #8778 (New): Have explicit subclass for CdmSourceLink sources
- copied from #8688: Possible open questions related: do we want to have a new subclass for OriginalSourceBase which on...
- 02:27 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon
- I think we can close this. If problems occurr we may reopen or immediately fix.
- 02:14 PM feature request #8044 (Feedback): Add "Move to..." menu to term editor
- * For this usecase the title and the description in the term selection wizard needs to be adapted. It should be somet...
- 01:56 PM bug #7994 (Duplicate): Implement allowDuplicates for term trees in TaxEditor
- This is a duplicate for #8477, #8776
- 01:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
- Note: saving often does not work due to issues to be solved in #8774
- 01:47 PM feature request #8476 (In Progress): Implement support for TermCollection.isFlat in TaxEditor
- Only the flag is editable until now so I put this back to InProgress.
- 01:53 PM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
- Note: saving often does not work due to issues to be solved in #8774
- 01:50 PM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees
- Only editing the flag is implemented until now so I put it back to InProgress
- 01:52 PM bug #8776: Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Note: saving often does not work due to issues to be solved in #8774
- 01:25 PM bug #8776 (Closed): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- * ~~The error message currently looks like an unhandled error. The message should only inform about the fact that dup...
- 01:41 PM feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor
- Generally this works but there are some open issues. I moved them all to a new ticket: #8776
- 12:19 PM feature request #8242 (Closed): Implement filtered combo boxes for state selection in CharacterMatrix
- This is generally implemented. There are follow up tickets like #8254 and #8775
- 12:14 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
- This seems to work now. There are issues with the general (rapid) data entry of categorical data into the matrix. The...
- 12:12 PM feature request #8775 (In Progress): Improve (rapid) data entry into characater matrix for categorical data
- Quantitative data can be entered into the matrix very fast by only using the keyboard via return, left, right and num...
- 11:50 AM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors
- 11:44 AM bug #8751: Replace saveOrUpdate() in AbstractTermTreeEditor
- This is probably more or less a duplicate for #8774 and will be fixed by #8774
- 11:41 AM bug #8663 (Duplicate): LIE when trying to save a tree node
- This is probably a duplicate for #8744
- 11:38 AM bug #8744 (Closed): LazyInitializationException (LIE) saving the Character Editor
- The LIE itself seems to be fixed by switching to merge() but there are still very serious issues related to saving of...
- 11:28 AM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- Andreas Müller wrote:
> hmm, it does not really seem to be the problem, but I found that there seems no session to b... - 11:36 AM bug #8774 (Closed): Reimplement term tree editors to implement the general save strategy
- Currently term trees save changes in the hierarchy (including new terms/nodes) immediately in the DB. This is against...
- 11:24 AM bug #8748 (Closed): Supported state vocabularies should be ordered
- This is fixed and is a very nice and important feature.
- 11:22 AM feature request #8755 (Closed): Show all structure/property trees in CharacterEditor
- Follow up issues are moved to extra tickets so we can close this one.
- 11:20 AM feature request #8773 (New): [DISCUSS] Allow editing structure and properties tree in Character Editor
- copied from #8755#note-3:
"with the current state of the structure tree it is sometimes wanted to extend this tree... - 10:23 AM feature request #8772 (New): Recognize Character duplicates
- Characters constructed from structure and property (and structural modifier) can be recognized as duplicates by this ...
- 09:10 AM feature request #8771 (Feedback): display of average value with precision so that it differs from min and max by one digit
- do you agree with my suggestion?
- 09:07 AM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit
- The display of decimal place for average value should be adjusted so that it differs from the values on min and max (...
12/16/2019
- 05:05 PM feature request #8769 (Feedback): Biocase import configuration should be shown when clicking on import button
- I fear that just opening the import config dialog does not really help.
I suggest to solve this problem differently:... - 02:11 PM feature request #8769 (In Progress): Biocase import configuration should be shown when clicking on import button
- The configuration dialog should be opened everytime the import button is clicked.
At the moment the configuration ... - 04:58 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- ready for review
- 01:41 PM bug #8766 (Resolved): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- Applied in changeset commit:cdm-dataportal|f63479aed323653e11922bb4dc3865537c5904cb.
- 04:33 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found
- fixed
- 04:33 PM bug #8770 (Resolved): NameControllers responds with all entities when name uuid is not found
- Applied in changeset commit:cdmlib|cc3ce6e30c74308b6697f6007d03d37b00cce8ff.
- 04:25 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found
- When the uuid in `portal/name/c0b7aa13-301d-4a0c-a8c6-843e96c34ba8/taxonNameDescriptions.json` is not found in the db...
- 04:32 PM Revision cc3ce6e3 (cdmlib): fix #8770 responding with http code 404 in case name uuid is not found
- 04:01 PM Revision b0b87ef4 (cdm-dataportal): ref #8658 relaxing palmweb test assertions to conform new data portal code (ignoring inconsistent html in bibliography block)
- 02:42 PM Revision d43a3486 (cdm-dataportal): ref #8658 again using feature name as key for blocks (uuid broke too much tests by now)
- 01:41 PM Revision f63479ae (cdm-dataportal): fix #8766 improving display of statistical measures (sample size, variance, standart deviation)
- 11:41 AM Revision 86bbdab9 (taxeditor): ref #7981: add aggregation wizard to character matrix
- 11:39 AM Revision bb7eab5c (taxeditor): ref #7981: externalization of strings
- 11:35 AM Revision 70e39ea8 (taxeditor): ref #7981: implement aggregation configuration wizard
- 09:26 AM Revision cba88a5e (cdmlib): rename ExternalNameIdentifier to ExternalIdentifier
12/13/2019
- 03:47 PM bug #8739: remaining issues for description detail page
- removing obsolete conversation records from the issue description since these points are already handled in other iss...
- 03:40 PM bug #8739 (In Progress): remaining issues for description detail page
- 03:32 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- Hallo Andreas,
erstmal zu Extrems und so. Eigentlich sind min und max die Extremwerte. TypicalXXXBoundary sind die... - 03:32 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- Hallo,
ich habe eine Verständnisfrage zur Ausgabe Quantitativer Daten mit Min, Max und Exact values.
Beispiel w... - 08:15 AM bug #8766 (Closed): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- 1. nur [27],
2. das sollte dann irgendwo generell erklärt werden.
Übrigens sollten die anderen counts dann auch... - 03:22 PM Revision ff197011 (cdmlib): ref #8477 Check if duplicates are allowed before adding terms to trees
- 02:41 PM Revision eab86ee2 (cdm-dataportal): ref #8739 removing dead code
- 02:14 PM task #8768 (New): DISCUSS: place CdmLinks in a separate pseudo feature block?
- Norbert [Freitag, 22. November 2019 10:22]
sorry, nee, das gefällt mir überhaupt nicht!!
Einmal schon nicht weg... - 02:07 PM feature request #8686 (Resolved): Support CdmLink sources in bibliography
- **Note**: The links to the taxa are having a fragment which directly focuses on the "Aggregation Description"
As ... - 02:03 PM feature request #8686: Support CdmLink sources in bibliography
- Andreas Müller wrote:
> Support for link to taxa has been added in #8724. So we need to check or implement that also... - 02:02 PM Revision 4dfb209d (cdmlib): fixing ClassCastException in CdmLinkSource for taxa
- 01:52 PM Revision fec3fd41 (cdm-dataportal): ref #8686 adding support for Taxon CdmLinks in "Bibliography"
- 01:48 PM Revision d29f2403 (taxeditor): aggregation configuration wizard page super class
- 01:04 PM bug #8687: Description page must show all DescriptionElement subclasses
- Assigning AK because it is a dataportal ticket
- 01:02 PM feature request #8655 (Duplicate): Handle duplicates in term tree editor
- 12:47 PM bug #7994 (Resolved): Implement allowDuplicates for term trees in TaxEditor
- 09:54 AM bug #7994 (In Progress): Implement allowDuplicates for term trees in TaxEditor
- 12:46 PM Revision d800b880 (taxeditor): ref #8476, #8474 Set isFlat to false when creating a term tree
- 12:46 PM feature request #8474 (Resolved): Make TermCollection.orderRelevant usable for TermTrees
- 09:54 AM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees
- 12:44 PM feature request #8476 (Resolved): Implement support for TermCollection.isFlat in TaxEditor
- 12:42 PM feature request #8477 (Resolved): Implement support for TermCollection.allowDuplicates in TaxEditor
- 09:54 AM feature request #8477 (In Progress): Implement support for TermCollection.allowDuplicates in TaxEditor
- 12:38 PM Revision a9c3f41a (taxeditor): ref #8477 Set allow duplicates to false when creating a term tree
- 12:32 PM Revision 2ba9931c (cdmlib): ref #8477 Check if duplicates are allowed before adding terms to trees
- 12:31 PM Revision 46809662 (cdmlib): fix abcd import when gathering date of associated unit is null
- 12:22 PM Revision 8de7ec9f (cdmlib): make all MAN uuids public
- 12:22 PM Revision 53838507 (cdmlib): remove unneccary instanceof
- 12:18 PM Revision 236273db (taxeditor): ref #8477 Check if duplicates are allowed before adding terms to trees
- 11:40 AM Revision d1d5ffd0 (cdmlib): fix abcd import when gathering date of associated unit is null
- 10:23 AM Revision 1e03f16d (taxeditor): ref #8450 Check for duplicate features in matrix startup
- 10:03 AM Revision 4f2c16a0 (taxeditor): ref #8476, #8474, #7994, #8477 Add checkboxes for term tree flags
- 08:52 AM bug #8767 (Closed): Workflow support for publish flag
- When changing an unpublished synonym to a MAN aftwards the MAN is published. This is not correct. The publish flag sh...
12/12/2019
- 06:11 PM bug #8718 (Closed): polytomousKey page: better handling of invalid uuids
- "Named area" is the term being used in general in the dataportal, but this is another issue - closing this ticket.
- 06:00 PM bug #8718 (Feedback): polytomousKey page: better handling of invalid uuids
- Yes it seems to work now.
Only minor issue: instead of Named Area we could say simply "Area". Named area is a bit ... - 06:07 PM feature request #8758: Aggregated Descriptions: order states by frequency
- please review or pass to someone else of the additivity team.
- 06:06 PM feature request #8758 (Resolved): Aggregated Descriptions: order states by frequency
- Applied in changeset commit:cdm-dataportal|4c9d7e324d3c0e2795465c774284abb0704c7e7c.
- 06:06 PM Revision 4c9d7e32 (cdm-dataportal): fix #8758 aggregated descriptions: states ordered by frequency
- 05:27 PM Revision 089fb6ea (cdm-dataportal): ref #8765 fixing bug regarding order of toc items
- 03:56 PM bug #8765 (Resolved): defined weight for feature and pseudo feature blocks and position "Description (aggregated)" after "Description"
- This is now implemented for all pseudo feature blocks. The position of the blocks can be configured in the setting in...
- 03:45 PM bug #8765 (Resolved): defined weight for feature and pseudo feature blocks and position "Description (aggregated)" after "Description"
- *recovery from accidentally deleted previous ticket #8658*
----
copied from #8596#note-8
* weight value for ... - 03:08 PM Revision c3a41ddb (cdm-dataportal): fix #8658 position of all pseudo feature blocks configurable in relation to the chosen feature tree
- 02:47 PM bug #8313 (Resolved): Multiple categorical data get deleted when clicked on in Character Matrix
- 02:45 PM Revision a1171a3c (taxeditor): ref #8313 Adapt display converter to Collection<String> display value
- 02:45 PM Revision 74e7e3df (cdmlib): ref #8313 Return a collection of strings for display value
- 01:15 PM bug #8764 (Worksforme): moving subtree results in NPE
- Moving a subtree in character editor results in NullPointerException.
This problem again comes with null values in... - 11:47 AM Revision bf8aea21 (cdm-dataportal): ref #8658 constants for pseudo feature blocks
- 11:28 AM bug #8735 (Duplicate): Character Node Editor: allow line breaks at slashes in structure representation
- 10:52 AM task #8716: Configure taxeditor to run with GTK2 in linux
- Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > On my home desktop PC with Linux Mint, Cinnamon desktop I h... - 10:12 AM task #8716: Configure taxeditor to run with GTK2 in linux
- Patrick Plitzner wrote:
> On my home desktop PC with Linux Mint, Cinnamon desktop I have no problems but I also did ... - 10:39 AM Revision b6ebeb25 (taxeditor): add check for potential session exception
- 10:26 AM bug #8511: The structure path in the character details view should have a line break
- please also close the duplicate if this issue is fixed
- 10:25 AM bug #8511 (Resolved): The structure path in the character details view should have a line break
- Applied in changeset commit:taxeditor|f8139f49d666289b10c06aa59d09986adebfe258.
- 10:17 AM bug #8511: The structure path in the character details view should have a line break
- This issue has a duplicate #8735
please see this ticket for ideas on handling this issue - 09:18 AM bug #8511 (In Progress): The structure path in the character details view should have a line break
- 10:24 AM Revision f8139f49 (taxeditor): fix #8511 Add line break to structure and property path in detail view
- 10:04 AM bug #8757 (Closed): ArrayIndexOutOfBoundsException in term combo
- Seems to work as expected.
- 09:41 AM feature request #8756 (Feedback): Refresh button for structure tree and property tree in Character Editor
- It does not work. I changed the order of the properties tree in demo bupleurum 01. After saving an pushing refresh bu...
12/11/2019
- 09:54 PM bug #8511: The structure path in the character details view should have a line break
- .. and this is probably a no-brainer?
- 09:52 PM bug #8338: Newly created structural modifier terms are not available in details view
- This is also a bit annoying, therefore I move it to 5.12 in case time is there to fix it.
- 06:46 PM Revision 034ce108 (cdmlib): ref #8736 minor performance improvement when adding specimens to matrix
- 06:19 PM bug #8736 (Resolved): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
- Applied in changeset commit:cdmlib|9e89976076d8a735426f40e4cebb49c42bd5ab33.
- 06:19 PM Revision 9e899760 (cdmlib): fix #8736 Fix LIE when adding specimens to matrix
- 06:09 PM feature request #8688: Make OriginalSourceBase.cdmSource visible in TaxEditor
- Current implementation shows the titleCache if it is an IdentifiableEntity. It shows the UUID if it is a CdmBase. Oth...
- 06:08 PM feature request #8688 (Resolved): Make OriginalSourceBase.cdmSource visible in TaxEditor
- Applied in changeset commit:taxeditor|5d945a6ece2394f970845815a0dc7f08bb70e1b4.
- 06:07 PM Revision 5d945a6e (taxeditor): fix #8688 Make OriginalSourceBase.cdmSource visible in TaxEditor
- 05:43 PM task #8716 (Feedback): Configure taxeditor to run with GTK2 in linux
- On my home desktop PC with Linux Mint, Cinnamon desktop I have no problems but I also did not have any problems befor...
- 05:26 PM feature request #8044: Add "Move to..." menu to term editor
- This is not not experimental anymore.
Known issues when reviewing:
* It is still possible to select multiple te... - 05:25 PM bug #8763 (Duplicate): Remaining issues for "Move term" in term editor
- Known issues:
* ~~It is still possible to select multiple terms in the term search dialog but a warning will appea... - 05:17 PM Revision 2c450f49 (taxeditor): Remove "experimental" status from
- - polytomous key generation
- move term menu in term editor
- export ontology in term tree editor - 05:07 PM feature request #8755: Show all structure/property trees in CharacterEditor
- Andreas Müller wrote:
> We tested intensively today during the integrated taxonomy course. It worked fine.
>
> 2 ... - 12:36 PM feature request #8755 (Feedback): Show all structure/property trees in CharacterEditor
- I am passing this ticket to you since the questions in comment 3 are addressed to the implementer.
- 04:22 PM Revision bf3acb28 (taxeditor): fix potential NPE
- 03:46 PM Revision c7d8a579 (cdm-dataportal): moving description related functions into descriptions.inc
- 03:43 PM Revision 6b9012bd (cdm-dataportal): renaming method compose_cdm_description to compose_cdm_description_table
- 03:36 PM feature request #8762 (New): [DISCUSS] Do we need/want to report a count for missing data in aggregated descriptions
- ... for reasons why this could be useful see #8759#note-4
- 03:33 PM feature request #8759: Description aggregation : suppress state present when more details are available
- This case usually is dirty or incomplete data. Dirty data should be shown on the portal to make it findable (correcta...
- 03:00 PM feature request #8759 (Feedback): Description aggregation : suppress state present when more details are available
- I adapted the description to avoid misunderstandings
In your comment you seem to suggest to show the following si... - 02:43 PM feature request #8759: Description aggregation : suppress state present when more details are available
- No this is a misunderstanding. The requirement is:
Do not show character and value for characters of property pres... - 01:19 PM feature request #8759: Description aggregation : suppress state present when more details are available
- This should be handled already during the aggregation process.
- 01:18 PM feature request #8759 (Resolved): Description aggregation : suppress state present when more details are available
- In character trees frequently a parent character is being used to determine the presence or absence of subordinate ch...
- 03:17 PM bug #8718 (Resolved): polytomousKey page: better handling of invalid uuids
- Andreas Müller wrote:
> Instead of saying "page not found" can't we do the same as for taxa and say "xxx does not ex... - 02:49 PM bug #8718 (Feedback): polytomousKey page: better handling of invalid uuids
- Instead of saying "page not found" can't we do the same as for taxa and say "xxx does not exist". This sounds a bit m...
- 02:41 PM bug #8718: polytomousKey page: better handling of invalid uuids
- done
please review I you have time to:
http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/n... - 01:58 PM bug #8718 (Resolved): polytomousKey page: better handling of invalid uuids
- Applied in changeset commit:cdm-dataportal|4d9660ef5a78a9d741385db13549716889ceabb1.
- 02:40 PM Revision de017852 (cdm-dataportal): fix #8718 humane error message in case the page does not exists: bug fixes and revering erroneously comitted change
- 02:24 PM feature request #8756 (Resolved): Refresh button for structure tree and property tree in Character Editor
- Applied in changeset commit:taxeditor|a0f4664b4135fac8549cf6a0b0836acb248abbb8.
- 01:46 PM feature request #8756 (In Progress): Refresh button for structure tree and property tree in Character Editor
- 02:23 PM Revision ba2f2883 (taxeditor): ref #8744 Correctly initialize cdmEntitySession for character editor
- 02:13 PM feature request #8761 (Closed): Remove TaxonName_NomenclaturalStatus MN table
- As a status belongs always to exactly 1 name an MN table is not necessary
- 02:13 PM Revision a0f4664b (taxeditor): fix #8756 Add Refresh button for Character Editor
- 01:58 PM Revision 4d9660ef (cdm-dataportal): fix #8718 humane error message in case the page does not exists: polytomous key, description, media, reference
- 01:41 PM bug #8760 (New): Presentation and linking of molecular data in specimen table too unclear
- Hallo,
mir ist auf http://test.e-taxonomy.eu/dataportal/preview/campanulaceae/cdm_dataportal/taxon/48249487-e921... - 01:10 PM feature request #8758 (Closed): Aggregated Descriptions: order states by frequency
- Most frequent states should be displayed first.
Another option to order the stated would be the term order as defi... - 10:36 AM bug #8757 (Resolved): ArrayIndexOutOfBoundsException in term combo
- 10:34 AM bug #8757 (Closed): ArrayIndexOutOfBoundsException in term combo
- … im Details View, beim Versuch Leaf length über Facts View einzugeben. Leaf length hat recommendedMeasurementUnit „...
- 09:54 AM Revision 8af14eec (taxeditor): fix IndexOutOfBoundsException in TermComboElement
12/10/2019
- 11:56 PM feature request #8028: Better representation of web app media in the image gallery
- AM:
Grundsätzlich sollten wir zwischen wirklichen Media und ExternalLinks unterscheiden. Das sind 2 Dinge, Media k... - 05:25 PM feature request #8028 (New): Better representation of web app media in the image gallery
- 05:24 PM feature request #8028: Better representation of web app media in the image gallery
- Alternative suggestion from Walter [06.12.19]:
Am wichtigsten wäre es mir, den grauen Kasten loszuwerden (das find... - 06:57 PM feature request #8755: Show all structure/property trees in CharacterEditor
- We tested intensively today during the integrated taxonomy course. It worked fine.
2 questions:
1) with the cu... - 06:57 PM feature request #8756: Refresh button for structure tree and property tree in Character Editor
- I assigned this to KL for now. PP if you think it is a no-brainer and you can immediately do it please feel free to t...
- 06:55 PM feature request #8756 (Feedback): Refresh button for structure tree and property tree in Character Editor
- copied from #8755, explanations see there
- 05:36 PM task #8741 (Closed): Create test for MapServices to test if they support https
- done, see https://dev.e-taxonomy.eu/gitweb/edit-map-service-test.git/commit/9603e65de34cde146ba1020f0ed5e1290bf558c7
- 11:00 AM bug #8747: Matrix Editor: Can not unset categorical data
- Sorry, but I consider the priority of this ticket here as being much higher than the priority of #8755. #8755 does no...
- 09:59 AM bug #8747 (New): Matrix Editor: Can not unset categorical data
- This should be done sooner or later but it has not highest priority so not a task for PP anymore. Change user and ver...
- 09:15 AM bug #8747 (In Progress): Matrix Editor: Can not unset categorical data
- Please change it so that checkbox state is toggled each time when being clicked.
- 10:51 AM Revision dce889fe (taxeditor): case insensitive sorting in vocabulary combo
- 12:13 AM Revision e153cc8e (cdmlib): ref #8679 handle null values in missing values correctly
12/09/2019
- 10:43 PM Revision 9d08bc87 (cdmlib): cleanup
- 09:55 PM Revision 151c9262 (cdmlib): ref #8679 fix structured desc aggregation for missing values and min/max only values
- 06:16 PM feature request #8755 (Resolved): Show all structure/property trees in CharacterEditor
- Applied in changeset commit:taxeditor|6803fca4a0c8065b5c4227de7ee853b7969e5332.
- 03:55 PM feature request #8755 (Closed): Show all structure/property trees in CharacterEditor
- Currently you can only choose one tree for each term type
- 06:16 PM Revision 6803fca4 (taxeditor): fix #8755 Show all structure/property trees in CharacterEditor
- 06:13 PM Revision f2816950 (cdmlib): cleanup
- 05:17 PM Revision 244c2806 (cdmlib-apps): ref #2717 adapt export for DisplayName, WebShowName etc. to E+M requirements
- 05:07 PM Revision 509d3795 (cdmlib-apps): adapt E+M activator to new AggregationMode class
- 05:07 PM Revision 3556e662 (cdmlib-apps): cleanup
- 05:06 PM Revision ce2d36db (cdmlib-apps): add Serbia + Kosovo, remove NorthAmerica from PESI areas
- 05:02 PM Revision e16a65b4 (cdmlib): add comment that volumes with dot are maybe handled incorrectly
- 05:02 PM Revision 3ebca137 (cdmlib): cleanup
- 05:01 PM Revision 1d498af3 (cdmlib): add Ko and Se to BerlinModelTransformer for PESI
- 04:20 PM Revision 463a9393 (cdmlib): remove duplicated call of getTitleWithoutYearAndAuthorGeneric
- 04:19 PM Revision 7ea3e253 (cdmlib): cleanup
- 04:08 PM bug #8663 (Feedback): LIE when trying to save a tree node
- I cannot reproduce this. I also tested saving some changes for this character tree on rem_conf_am.
If you cannot r... - 01:38 PM bug #8663 (New): LIE when trying to save a tree node
- No this is not a duplicate. It looks like it happened in the term tree editor, not in the Character editor.
- 12:57 PM bug #8663 (In Progress): LIE when trying to save a tree node
- Is this a duplicate for 8744?
- 04:03 PM bug #8747 (Feedback): Matrix Editor: Can not unset categorical data
- Andreas Kohlbecker wrote:
> I don't consider this as user friendly. Is this default behavior of the nattable?
>
>... - 03:27 PM bug #8748 (Resolved): Supported state vocabularies should be ordered
- This should be fixed now, please review.
- 12:51 PM bug #8748: Supported state vocabularies should be ordered
- This is handled by KL as far as I know.
- 03:21 PM Revision edca2436 (taxeditor): ref #8748: fix filter, change combo from ccombo to combo
- 01:59 PM bug #8746: Multiple representations problem on saving Matrix Editor
- Is this reproducable? Otherwise I would close this ticket because MRE occurr everywhere from time to time.
- 01:30 PM feature request #8656 (Resolved): [DISCUSS] Should only characters be allowed for DescriptiveDataSets/Character Matrix?
- 01:19 PM bug #7990: Moving a feature via d&d does not make the Feature Tree Editor dirty
- In general the feature tree editor should persist data only after pushing save and therefore needs to be refactored. ...
- 01:03 PM bug #7994: Implement allowDuplicates for term trees in TaxEditor
- There is a flag now for term trees which defines if duplicates are allowed: "allowDuplicates"
But the according fu... - 12:42 PM feature request #7701 (Resolved): Add link to typified name on specimen page of data portal
- So I put this to resolved in current milestone so it can be reviewed. Please change back if not yet solved.
- 12:40 PM feature request #7701: Add link to typified name on specimen page of data portal
- maybe this is already solved
12/07/2019
- 06:11 PM bug #8312 (In Progress): Test, fix, improve and run Transmission engine for E+M
- 06:07 PM feature request #6352 (Duplicate): Add Transmission Engine trigger to Admin menu
- 09:57 AM Revision ff19d87a (cdmlib): ref #8679 add done() to monitoring if unexpected exception occurred.
- 09:57 AM Revision 49c84c83 (cdmlib): add getNameCache(name, tagRules) to INameCacheStrategy
12/06/2019
- 10:04 PM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- Based on the dump and situation in #8752:
* deleted both descriptive datasets
* delete the Character trees (for p... - 09:53 PM bug #8753 (Closed): EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- Based on the dump and situation in #8752:
* deleted both descriptive datasets
* Immediately open the Character T... - 09:44 PM bug #8752 (Worksforme): Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset
- It seems as if the DescriptiveDataset has been corrupted somehow.
1. I removed all "specimens" from the matrix at ... - 06:19 PM bug #8747 (New): Matrix Editor: Can not unset categorical data
- I don't consider this as user friendly. Is this default behavior of the nattable?
Since there are check boxes in t... - 12:21 PM bug #8747 (Resolved): Matrix Editor: Can not unset categorical data
- You have to hold CTRL and select the chosen state again to de-select.
- 06:16 PM bug #8746: Multiple representations problem on saving Matrix Editor
- Patrick Plitzner wrote:
> Did you just enter categorical and quantitative data?
> Did you only enter data for this... - 12:23 PM bug #8746 (Feedback): Multiple representations problem on saving Matrix Editor
- Did you just enter categorical and quantitative data?
Did you only enter data for this one specimen?
Did you edit a... - 04:03 PM Revision 66de5a6c (taxeditor): ref #8450 Fix refresh after changes
- 03:44 PM bug #8744 (Resolved): LazyInitializationException (LIE) saving the Character Editor
- This seems to be fixed now by using merge(). We still have to have a look at TermTreeEditor which currently still use...
- 02:05 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- hmm, it does not really seem to be the problem, but I found that there seems no session to be defined
 saving the Character Editor
- After changing the users such that only 1 user was attached to all data like TermRelation, DefinedTermBase, TermVocab...
- 01:13 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- We need to test the behavior if data is edited with different users, it seems like at least one user (former user - u...
- 01:11 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
- I do not understand how we can have a LIE within a save. With save all objects should be within the session by Merge....
- 03:42 PM bug #8751 (Duplicate): Replace saveOrUpdate() in AbstractTermTreeEditor
- Unexpectedly saveOrUpdate() is used instead of merge().
Currently, if you change to merge() an exception is thrown... - 03:36 PM Revision 64be1450 (taxeditor): ref #8744 Use merge in CharacterEditor.save()
- 02:18 PM Revision 1cfa8b28 (taxeditor): update layer doc
- 01:58 PM Revision fe281c15 (taxeditor): ws for biocase provider moved
- 01:41 PM feature request #8750 (New): Write tests for service layer methods getting the specimens for an assiociated taxon
- The service method for getting all specimen for an associated taxon needs tests:
The method should return all spec... - 01:27 PM Revision b9f38c00 (taxeditor): ref #8749: sort elements of vocabulary combo
- 01:18 PM bug #8748 (In Progress): Supported state vocabularies should be ordered
- Now there is a filter for the combo boxes.
- 11:17 AM bug #8748 (Closed): Supported state vocabularies should be ordered
- For characters there is a long list of state vocabularies now. Therefore they are difficult to find in the dropdown. ...
- 01:17 PM feature request #8749 (Duplicate): Add proposalProvider to AbstractComboElement
- 01:15 PM feature request #8749 (Closed): Add proposalProvider to AbstractComboElement
- To provide the filter to all combo elements add the proposalProvider to the AbstractComboElement.
This is used for... - 01:16 PM Revision a5a9ec69 (taxeditor): ref #8749: add proposalProvider to combo elements
- 11:59 AM feature request #7071: Reenable restore functionality
- Idea:
* After CdmStore has connected invoke "open Part" command on saved editors.
* EditorInput/UUID can be sav... - 09:20 AM Revision cbf13384 (taxeditor): ref #8677: rank combo contains rank of selected taxon
12/05/2019
- 05:20 PM bug #8747 (New): Matrix Editor: Can not unset categorical data
- Once categorical data state has been set in a cell this cell can not be made blank
- 05:01 PM bug #8744 (In Progress): LazyInitializationException (LIE) saving the Character Editor
- 04:59 PM bug #8744 (Resolved): LazyInitializationException (LIE) saving the Character Editor
- Applied in changeset commit:taxeditor|5fa6172961481d22d6282abc10b4c350fe1c8bce.
- 04:58 PM Revision 5fa61729 (taxeditor): fix #8744 Fix LIE while saving character editor
- 04:38 PM bug #8746 (Rejected): Multiple representations problem on saving Matrix Editor
we did several edits in the matrix for multiple specimens.
Last edit was setting the the state for leave architect...- 04:33 PM bug #8745 (Resolved): Type designations of synonyms missing on specimen page
- please review
- 04:31 PM bug #8745 (Closed): Type designations of synonyms missing on specimen page
- Type designations of synonyms are missing in the compressed specimen page.
mail NK:
Es geht darum, dass von den... - 04:30 PM Revision ca25238c (cdmlib): fix missing type designations of synonyms on specimen page
- 04:26 PM Revision 64c04c7d (taxeditor): ref #8450 Fix refresh of character tree after adding characters
- 04:25 PM Revision a494d916 (cdm-dataportal): add class name to type designation exception
- 04:23 PM Revision 5fedf5d5 (taxeditor): ref #8450 Do not show sec reference in matrix
- 02:57 PM Revision 3c162754 (cdmlib): ref #8679 top level error handling and renaming aggregation methods
- 02:36 PM Revision 851664fd (cdmlib): ref #8679 try to fix progress tasks and percentage not showing up
- 02:35 PM Revision 9cabea44 (cdmlib): cleanup
- 02:20 PM feature request #8677 (In Progress): Add distribution aggregation to set subtree menu
- Open issues:
* ~~highest rank should include the rank of the selected taxon~~
* ~~lowest rank should inlcude th... - 02:10 PM Revision e6b6fbe5 (taxeditor): ref #8677 minor tooltip changes
- 08:20 AM Revision c6883acf (cdmlib): ref #8679 Add test for incomplete categorical data
12/04/2019
- 10:40 PM bug #6629 (Closed): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
- NK: Ist jetzt OK.
- 02:34 PM bug #6629 (Resolved): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank levels
- For Acanthoscephalus, Heteroderis, Crepis and Lagoseriopsis the aggregation seems to work now. For Cichorium intybus ...
- 06:57 PM bug #8744 (Closed): LazyInitializationException (LIE) saving the Character Editor
- saving the Character Editor after changing the Character Node details causes an LazyInitializationException every tim...
- 05:58 PM Revision 475575b3 (cdmlib): Fix gcTime calculation
- 05:58 PM Revision 2a71dd1c (cdmlib): ref #8679 Add cancel points for aggregation progress monitor
- 05:58 PM Revision 80c4e54e (cdmlib): ref #8679 Filter out cloned specimen descriptions
- 05:29 PM bug #8743 (New): BioCASE specimen import: ignore invalid biocase accesspoint urls
- This is especially important for the DNA import. If an URL is specified which is not pointing to a BioCase provider t...
- 02:51 PM Revision 724c463a (taxeditor): ref #8677: correct enabling and disabling of elements
- 02:50 PM feature request #8742 (New): Allow deleting vocabularies
- Currently it is not possible to delete a vocabulary if it contains terms.
With OWL import (additivity) it is now pos... - 02:39 PM Revision 5373a0e9 (taxeditor): ref #8677: fix wrong type
- 02:37 PM Revision 80e27bc2 (cdmlib): fix compile error
- 02:28 PM Revision c274b9cc (taxeditor): ref #8677: smaller issues
- 02:18 PM Revision ef976e5a (taxeditor): ref #8677: set default selections, sort combos and other smaller issues
- 02:07 PM Revision 19739293 (cdmlib): ref #8679 rename supports fields and make public
- 02:01 PM Revision aaafab4d (cdmlib): make misappliedName uuid public (needed for PESI)
- 02:01 PM Revision 47992818 (cdmlib): ref #8679 let AggregationMode and AggregationSourceMode implement IKeyTerm and implement some list methods
- 01:37 PM Revision de4502ef (taxeditor): ref #8679 Adapt to cdmlib changes
- 01:20 PM Revision 5ee7595c (cdmlib): ref #8679 move aggregation modes to own class file
- 11:48 AM Revision 25a98c3f (cdmlib): ref #8677: getNamedAreaDTO
- 11:47 AM Revision 629035f4 (cdmlib): ref #8677: getNamedAreaDTO
- 11:18 AM Revision 5bafde13 (cdmlib): ref #8450 Fix quantitative data + add test
- 10:12 AM task #8741 (Closed): Create test for MapServices to test if they support https
- This especially tests if the existing certificate is still valid.
- 09:53 AM Revision 70946cb4 (taxeditor): ref #8677: layout and labeling in aggregation config wizard
- 09:38 AM Revision 882f3d24 (cdmlib): add left join for level in ternmDto sql query
- 09:38 AM Revision 3fb760db (cdmlib): fix cdmlight export test
12/03/2019
- 06:37 PM feature request #8721: Use webservice to get all biocase provider listed by gbif
- I agree with the above. Maybe the title is enough. Users usually recognize a collection by its title not it's service...
- 06:24 PM feature request #8721: Use webservice to get all biocase provider listed by gbif
- The access points should be searchable also by the accesspoint title, For the BGBM Herbarium the webservice lists th...
- 06:32 PM feature request #8740 (New): BioCASE specimen import: implement data set filter in specimen import dialog page 2
- once an access point has been selected in the fist step it should be possible to limit the search to a specific data ...
- 05:31 PM Revision 98fb83d7 (cdmlib): ref #8450 Set max to min if max null and vica versa
- - static method
- 05:28 PM Revision 693b87f5 (cdmlib): ref #8450 Set max to min if max null and vica versa
- 04:35 PM feature request #8657: Order description element in portal according to CharacterTree
- Can you provide an example url?
- 12:14 PM feature request #8657: Order description element in portal according to CharacterTree
- Assignin to you Andreas M.
But maybe also Andreas K. needs to look at the code - 04:34 PM Revision 2fc6f4c0 (cdmlib): set monitor methods to protected in DescriptionAggregationBase
- 04:28 PM Revision a4ca6fce (cdmlib): ref #8679 Add sources to aggregated description
- - within taxon: specimen description
- parent taxon: aggregated taxon description - 03:15 PM feature request #8713 (Resolved): Improve structured descriptive data aggregation
- At least tests exist now and also base class algorithm is used. Can you please review and put open issues into a foll...
- 02:20 PM Revision 20245cca (cdm-dataportal): ref #8595 Do not filter description sources by class
- 02:15 PM bug #8670: Unwanted distribution aggregation/display on 2 levels
- Auch hier bitte einen letzten Check ob noch was offen ist.
Anschließend können wir das Ticket schließen. - 02:14 PM bug #4134: Transmissionengine Distribution seems to miss distributions for higher Taxa
- I think this is fully fixed with the new implementation of the transmission engine (which allows the user to decide t...
- 02:08 PM feature request #5176 (Closed): TransmissionEngineDistribution can run on selected taxa
- This should be fully fixed. As it has been used already and also a TaxEditor UI for using it has been developped I cl...
- 01:49 PM feature request #8472 (Closed): Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- 01:48 PM Revision 412b2eee (cdmlib): ref #8472 remove final links to old MarkerType.COMPUTED handling
- 01:41 PM task #8468 (Closed): Remove old InapplicableIf tables
- 01:40 PM bug #8738 (Closed): CdmLink.startPos and .endPos should allow Null
- 01:40 PM bug #8702 (Closed): Remove Not null constraint for uuid in AUD tables
- 01:09 PM Revision 03d98738 (taxeditor): ref #8738 , ref #8702 , ref #8468 update TaxEditor test DB
- 01:09 PM Revision bcac7f33 (taxeditor): minor
- 01:07 PM Revision 86493549 (cdm-vaadin): ref #8738 , ref #8702 , ref #8468 update vaadin test DB
- 01:06 PM Revision b9b25534 (cdmlib): ref #8738 , ref #8702 , ref #8468 last changes for 5.12 update script
- 12:30 PM Revision 06d7ad52 (cdm-dataportal): ref #8595 Fix potential null pointer
- 12:21 PM feature request #8714: description page: Show multiple datasets per description as list of links
- To review you would have to manually add a description to multiple datasets in the database. There is no test data li...
- 12:19 PM feature request #8595: Create description detail page
- created new ticket for remaining issues and discussion -> #8739
- 12:17 PM bug #8739 (Closed): remaining issues for description detail page
- Copied from #8595
* Evtl. will man auf aggr. Description von höheren Taxa nicht die Specimen als Quellen anzeigen,... - 09:43 AM Revision dacb449b (cdmlib-apps): minor
- 09:39 AM Revision c64d9f63 (taxeditor): ref #8450 Remove aggregation/summary row
- 09:26 AM Revision ab5959ce (taxeditor): ref #8450 Remove charts and tooltip button
- 09:15 AM Revision 44e7eed6 (taxeditor): ref #8450 Disable re-ordering of columns
- 09:14 AM Revision b533829a (taxeditor): ref #8450 Fix freeze column index
12/02/2019
- 05:32 PM Revision b6143fd1 (cdmlib): cleanup
- 05:24 PM Revision 9f6ce960 (cdmlib): fix potential NPE when retrieving identifiers via type == null
- 04:56 PM Revision 0d1a8c63 (cdmlib): cleanup
- 04:53 PM Revision 1cbe14bb (cdmlib): cleanup
- 04:46 PM Revision 86c08d73 (taxeditor): Add tooltip to TermSearch menu item
- 04:35 PM Revision 287ae15a (taxeditor): ref #8450 Fix matrix taxon node hierarchy
- 03:56 PM Revision 7dd0d600 (cdmlib): ref #8766 Fix potential ArrayIndexOutOfBoundsException
- 03:43 PM Revision 57b6d909 (cdmlib): ref #8468 replace Inapplicable tables in ClearDB files (remaining)
- 03:39 PM Revision f7a5f872 (cdmlib): ref #8766 remove a.level from TermDto SELECT statement
- 03:24 PM Revision dfbe0f52 (cdmlib): ref #8468 replace Inapplicable tables in ClearDB files
- 03:05 PM Revision 2fcd811a (cdmlib): ref #8468 further fix test schema
- 02:19 PM Revision 32d3420e (cdmlib): ref #8468 fix model cache and test sql
- 01:33 PM Revision 69b55e11 (cdmlib): ref #8766: add level to TermDto
- 01:29 PM Revision 07b9b244 (taxeditor): ref #8679 Set taxon node filter and no batch size adaption
- 01:28 PM Revision b1b9414c (cdmlib): typo
- 01:28 PM Revision 34726589 (cdmlib): ref #8679 Add initTransaction() super method
- - hook for initializing object when a new transaction starts
- 01:27 PM Revision 26024c71 (taxeditor): ref #8677: layout issues - continue
- 01:21 PM Revision f67d22e7 (taxeditor): ref #8677: layout issues
- 12:54 PM Revision b58f9986 (cdmlib): minor
- 12:54 PM Revision 9e5a8c54 (cdmlib): ref #8468 fix JAXB for removed inapplicableIF
- 12:31 PM feature request #8433 (Duplicate): Disallow user names with whitespace
- This is a duplicate for #8454 and has been fixed in CDM UML 5.8
- 12:26 PM task #8468 (Resolved): Remove old InapplicableIf tables
- Applied in changeset commit:cdmlib|73391892ccf6af23d1f83357e460ea9b55df4e2d.
- 12:26 PM Revision a2c8f975 (cdmlib): ref #8468 remove old attributes from TermNode
- 12:25 PM Revision 65397e52 (cdmlib): rename TableDroper -> TableDropper
- 12:23 PM Revision 73391892 (cdmlib): fix #8468
- 12:23 PM Revision cdaeac9a (cdmlib): ref #8738 , ref #8702 add update script to remove null constraints from AUD.uuid and CdmLing.endPos (II)
- 12:12 PM bug #8702 (Resolved): Remove Not null constraint for uuid in AUD tables
- 12:12 PM bug #8738 (Resolved): CdmLink.startPos and .endPos should allow Null
- 10:55 AM bug #8738 (Closed): CdmLink.startPos and .endPos should allow Null
- The table was IntextReference before. After using it for class CdmLinkSource also the originally NOT NULL columns mus...
- 12:11 PM Revision dc5a41f6 (cdmlib): ref #8738 , ref #8702 add update script to remove null constraints from AUD.uuid and CdmLing.endPos
- 12:09 PM Revision 38f1e0aa (cdmlib): cleanup
- 12:01 PM Revision c3193e02 (cdmlib): rename SchemaUpdater v5.x packages
- 11:32 AM bug #8737 (Resolved): delete taxon included in two classifications deletes taxonname
- Now there is also the possibility to set the taxonnode configurator to deletetaxon = false. This was missing in the d...
- 09:42 AM bug #8737: delete taxon included in two classifications deletes taxonname
- please review.
- 09:35 AM bug #8737 (Closed): delete taxon included in two classifications deletes taxonname
- when deleting a taxon used in two classifications, the taxon still exist, but the name is deleted. This is because of...
- 11:28 AM Revision a66ea40a (taxeditor): ref #8737: add possibility to delete taxonnode wizard for only delete taxonnode
- 10:35 AM bug #8733: Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- This ticket is complex. In the ticket description is not written HOW the taxon is added. In general the underlying se...
- 08:24 AM bug #8733 (Feedback): Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- Currently the specimens listed in the specimen selection dialog are cached after the first time opening the dialog be...
- 08:40 AM feature request #8665 (Resolved): Rename "New" to "New Tree" in Term Tree editors
- Applied in changeset commit:taxeditor|210af90ccae0c45e1234bdb8fe216285293546c6.
- 08:40 AM Revision 210af90c (taxeditor): fix #8665 Show human readable term type in new tree string
- 08:37 AM bug #8732 (Duplicate): Descriptive Data Set Navigator: label not refreshed after change in Descriptive Dataset Editor
- This is already solved for release 5.12 with #8661
Please validate with the current nightly build. - 08:15 AM Revision 6f4db5c3 (taxeditor): remove system.out
- 07:40 AM Revision 9a2d6065 (cdmlib): ref #8679 Set batchMinFreeHeap in test setup
11/29/2019
- 05:17 PM bug #8736 (Closed): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
- To reproduce:
* use database: caryophyllales_spp (cactaceae)
* create new Descriptive Dataset (non specimens so f... - 04:27 PM Revision 73f2833f (cdmlib-apps): cleanup
- 04:20 PM Revision b4e7eccb (cdmlib-apps): #3945 move some PESI classes to new packages and minor issues
- 04:09 PM task #7976 (In Progress): [PESI][ERMS] Erms taxon import
- 04:09 PM task #8509 (In Progress): [PESI][ERMS] Export ERMS data to PESI
- 04:06 PM task #8577 (In Progress): [PESI][E+M] Validation for E+M export
- 03:35 PM bug #8735 (Duplicate): Character Node Editor: allow line breaks at slashes in structure representation
The line wrapping does not work for long structure representation. Breaks only happen where the term labels contain...- 01:48 PM Revision 45ca2f16 (cdmlib): ref #8679 Replace existing description elements in re-aggregation
- -add test for re-aggregation
- 12:58 PM Revision 91f2c632 (cdmlib): ref #8679 Load dataset in each session
- 11:28 AM task #8734 (Closed): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
- 10:34 AM task #8734 (In Progress): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
- SQL to use
~~~
UPDATE DescriptionElementBase deb
INNER JOIN DefinedTermBase a ON deb.area_id = a.id
INNER JOIN ... - 10:33 AM task #8734 (Closed): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
- This will shorten the textuell representations of distribution data in the data portal
- 01:49 AM bug #8731 (Resolved): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- now it works again with the nightly build.
- 12:47 AM bug #8731 (In Progress): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- This is strange, I can not reproduce this with an editor started from the workspace, also when using the actual git d...
- 01:44 AM Revision c11b0cd2 (taxeditor): data cleaning
- 01:30 AM Revision 7b017c3e (taxeditor): test other exception handling
- 01:07 AM Revision 947597cb (cdmlib): fix test
- 12:32 AM Revision 5adfd05a (taxeditor): ref #8731: minor
- 12:11 AM Revision 9b954e94 (cdmlib): add check for taxon and name in test
- 12:03 AM Revision 25f62069 (cdmlib): fix delete problems of taxa used in multiple classifications
11/28/2019
- 06:57 PM bug #8733 (Closed): Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- to reproduce
1. create Descriptive data set in caryophyllales_spp
* adding *Rhipsalis pilocarpa* by drag and dro... - 06:33 PM bug #8732 (Duplicate): Descriptive Data Set Navigator: label not refreshed after change in Descriptive Dataset Editor
- just exactly what is written in the subject.
- 03:55 PM Revision ec07174a (cdmlib-apps): fix E+M Activator
- 03:54 PM Revision 46ae6d5a (taxeditor): ref #8679 Set taxon node filter and aggregation mode
- 03:54 PM Revision 7079d656 (cdmlib-apps): cleanup
- 03:53 PM Revision 456a8f57 (taxeditor): Fix potential NPE
- 03:52 PM Revision 2adab869 (cdmlib-apps): update BgbmInstancesUpdater
- 03:45 PM bug #8731: BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- An import of specimens is not possible wit the current code base in the development branch.
- 03:40 PM bug #8731 (Closed): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- I am not sure about the timing of the situation in which this exception occurred.
I was searching the `http://ww3.... - 03:31 PM Revision 2b226eee (cdmlib): ref #8679 Add checks and repairs for valid quantitative data
- 03:31 PM Revision 2bc176df (cdmlib): Enhance toString()
- 03:31 PM Revision 33373464 (cdmlib): ref #8679 Remove usage of apache commons math
- 03:23 PM bug #8730 (New): OWL Term export progress monitor reports wrong process percentage
- The initial percentage is really funny:
 - 12:30 PM Revision 4bbc2279 (cdmlib): minor
- 12:29 PM bug #8720: blank perspective after using "Switch User"
- the perspective looked like this:
today is the first day this is not happening for quite ... - 12:05 PM bug #8720: blank perspective after using "Switch User"
- I am not sure if I fully understand the problem. When I try to change the user I get the "Taxonomic" perspective but ...
- 12:18 PM Revision 7903d041 (cdmlib): ref #8679 PropertyPath and code cleanup
- 12:18 PM Revision 5ef244fc (cdmlib): ref #8679 Convert to base class aggregation architecture
- - convert aggregation of quantitative data to parent
- convert aggregation of categorical data to parent - 12:18 PM Revision ba1bc425 (cdmlib): Enhance toString()
- 12:18 PM Revision 93c52359 (cdmlib): ref #8679 Convert to base class aggregation architecture
- - init dataset in preAccumulate
- filter SpecimenDescriptions by data set - 12:18 PM Revision 185e63ee (cdmlib): ref #8679 Convert to base class aggregation architecture
- - convert aggregation of quantitative data within taxon
- 12:18 PM Revision 54ed2cf2 (cdmlib): ref #8679 Add apache commons math to pom
- 12:18 PM Revision 497e4d3a (cdmlib): add toString()
- 12:18 PM Revision 1f0292f8 (cdmlib): ref #8679 Convert to base class aggregation architecture
- - convert aggregation of categorical data within taxon
- 12:18 PM Revision 1eb0391c (cdmlib): Add count to toString()
- 11:51 AM bug #8729: Refresh Taxon Navigator after Specimen import
- Seems to be very similar to #8659. So we may think about putting it also to 5.12. Katja, what do you think?
- 10:54 AM bug #8729 (New): Refresh Taxon Navigator after Specimen import
- After a successful specimen import vi BioCASE Provider the Taxon Navigator is not being refreshed.
New created Clas... - 11:03 AM Revision 0e6482c8 (cdmlib): ref #8724 fix JAXB for CdmLink
- 10:04 AM Revision 4cda0d0e (cdmlib): ref #7623: fix NPE
- 09:34 AM bug #8728: Specimen import via BioCASE silently fails
- Andreas Kohlbecker wrote:
> The problem in one specific case was that the user was not permitted to update a person:... - 09:26 AM bug #8728: Specimen import via BioCASE silently fails
- Next Problem:
~~~
[CREATE] not permitted for 'kurs1' on TaxonNode[uuid:79c3deac-ee1d-4622-91fa-746be0894161', toS... - 08:51 AM bug #8728: Specimen import via BioCASE silently fails
- The problem in one specific case was that the user was not permitted to update a person:
~~~
[UPDATE] not permitt...
11/27/2019
- 04:42 PM bug #8728: Specimen import via BioCASE silently fails
- As the import works without problems with the `admin` user, it seems as if this is a permission problem.
@Katja: 1... - 04:24 PM bug #8728: Specimen import via BioCASE silently fails
- this is reproducible
once this error has occurred the taxeditor has to be restarted, otherwise further import atte... - 04:15 PM bug #8728 (New): Specimen import via BioCASE silently fails
- ABCD Specimen import via BioCASE provider silently fails
Logged in as user with GAs: `Editor` + `TAXONNODE.[CREATE... - 03:39 PM EDIT Platform Etablierung task #8727 (In Progress): Test Workshop workflow
- 03:21 PM EDIT Platform Etablierung task #8727 (Closed): Test Workshop workflow
- **Use the simple editor user accounts: kurs1..5**
The section of taxa to test the workflow with is based in the ... - 03:00 PM Revision 700aa970 (cdmlib): Fix potential NPE
- 02:58 PM Revision 5a36818d (cdmlib): ref #8724 handle taxon in CdmLinkSource
- 02:39 PM feature request #8686: Support CdmLink sources in bibliography
- Further more there is a discussion if links to taxa should be direct links from the description(element) to the taxon...
- 02:38 PM feature request #8686: Support CdmLink sources in bibliography
- Support for link to taxa has been added in #8724. So we need to check or implement that also links to taxa are handle...
- 02:36 PM feature request #8724 (Resolved): Allow OriginalSource to link to Taxon
- 02:25 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon
- When aggregating (or moving) data one may want to link to the taxon the data originally comes from so we need a possi...
- 02:35 PM feature request #8726 (New): the search preference search field should be a list
- The preference defining the search field should be not a single value, but a list of fields on which the seach should...
- 02:34 PM feature request #8725 (Feedback): Add abbreviation to namedArea text field in distribution details view
- Some named areas have the same label therefore it would be nice to show an abbreviation like idInVoc. This should be ...
- 02:31 PM Revision 35a4f2f3 (cdmlib): ref #8724 add Taxon to ICdmTarget
- 02:31 PM Revision 41e8eb66 (cdmlib): minor
- 02:28 PM Revision de51cd68 (cdmlib): ref #7623: improve gathering agent parsing and query generation
- 02:24 PM Revision f084efb4 (taxeditor): ref #8677: layout issues in aggregation dialog
- 09:41 AM feature request #8721 (In Progress): Use webservice to get all biocase provider listed by gbif
- The prefilled combo and the filtering for entered text is implemented in the specimen dialog now.
- 09:38 AM Revision 14a62f14 (taxeditor): ref #8721: use webservice to get all biocase provider
- 09:18 AM Revision cf6340d0 (cdmlib): ref #8679 Test leaf color
- 09:11 AM bug #8723 (Worksforme): Distribution detailsview: changing the area removes the state
- When changing the area of a distribution the status is not displayed anymore. But the distribution still has the stat...
- 08:57 AM Revision 5125fb32 (cdmlib): fix NPE in media rights part of biocase import
- 07:31 AM Revision eace364b (cdmlib): ref #8679 Add leaf color
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