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bug #8753

closed

EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets

Added by Andreas Kohlbecker over 3 years ago. Updated almost 3 years ago.

Status:
Closed
Priority:
New
Assignee:
Katja Luther
Category:
taxeditor
Target version:
Release 5.15
Start date:
Due date:
% Done:

0%

Estimated time:
Severity:
normal
Found in Version:
Tags:
additivity

Description

Based on the dump and situation in #8752:

  • deleted both descriptive datasets
  • Immediately open the Character Tree Editor: The below exceptions occur but the character tree shows up neverthe less
  • Deleting the character tree does not solve the problem, opening the character tree editor raises the same exception even if it is emty now.
  • Reconnecting the editor solved the situation

Taxeditor Stack trace

login : admin
editor version : 5.12.0.201912060848
server : localhost (localhost-dev)
schema version : 5.12.0.0.20191202
os : Linux 5.0.0-37-generic amd64
java : 1.8.0_131
eu.etaxonomy.taxeditor.remoting.CdmEagerLoadingException: java.lang.NullPointerException
    at org.hibernate.collection.internal.AbstractPersistentCollection.remoteInitialize(AbstractPersistentCollection.java:1358)
    at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:627)
    at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:167)
    at org.hibernate.collection.internal.AbstractPersistentCollection.readSize(AbstractPersistentCollection.java:184)
    at org.hibernate.collection.internal.PersistentSet.size(PersistentSet.java:143)
    at eu.etaxonomy.taxeditor.ui.section.AbstractEntityCollectionSection.setSectionTitle(AbstractEntityCollectionSection.java:184)
    at eu.etaxonomy.taxeditor.ui.section.AbstractEntityCollectionSection.internalUpdateSection(AbstractEntityCollectionSection.java:210)
    at eu.etaxonomy.taxeditor.ui.section.AbstractEntityCollectionSection.setEntity(AbstractEntityCollectionSection.java:171)
    at eu.etaxonomy.taxeditor.view.detail.CdmSectionPart.setFormInput(CdmSectionPart.java:167)
    at org.eclipse.ui.forms.ManagedForm.setInput(ManagedForm.java:210)
    at eu.etaxonomy.taxeditor.view.e4.AbstractCdmDataViewerE4.refresh(AbstractCdmDataViewerE4.java:162)
    at eu.etaxonomy.taxeditor.view.e4.AbstractCdmDataViewerE4.setInput(AbstractCdmDataViewerE4.java:143)
    at eu.etaxonomy.taxeditor.view.e4.AbstractCdmEditorPartE4.showViewer(AbstractCdmEditorPartE4.java:269)
    at eu.etaxonomy.taxeditor.view.e4.supplementaldata.SupplementalDataPartE4.selectionChanged_internal(SupplementalDataPartE4.java:133)
    at eu.etaxonomy.taxeditor.view.e4.AbstractCdmEditorPartE4$DelaySelection.run(AbstractCdmEditorPartE4.java:92)
    at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
    at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
    at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4536)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4154)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
    at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
    at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
    at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
    at eu.etaxonomy.taxeditor.Application.start(Application.java:24)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
    at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
    at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
    at org.eclipse.equinox.launcher.Main.main(Main.java:1492)
Caused by: java.lang.NullPointerException
    at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl.initializeCollection(CdmGenericDaoImpl.java:872)
    at eu.etaxonomy.cdm.api.service.CommonServiceImpl.initializeCollection(CommonServiceImpl.java:354)
    at sun.reflect.GeneratedMethodAccessor118.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
    at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
    at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy164.initializeCollection(Unknown Source)
    at sun.reflect.GeneratedMethodAccessor118.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy253.initializeCollection(Unknown Source)
    at sun.reflect.GeneratedMethodAccessor128.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
    at org.springframework.remoting.support.DefaultRemoteInvocationExecutor.invoke(DefaultRemoteInvocationExecutor.java:39)
    at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
    at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
    at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:74)
    at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
    at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
    at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
    at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
    at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:871)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
    at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
    at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:841)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1634)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:213)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
    at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
    at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
    at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1621)
    at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1613)
    at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:541)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
    at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
    at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1584)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
    at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1228)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
    at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:481)
    at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1553)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
    at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1130)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.Server.handle(Server.java:564)
    at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:320)
    at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:251)
    at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
    at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:112)
    at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
    at org.eclipse.jetty.util.thread.Invocable.invokePreferred(Invocable.java:122)
    at org.eclipse.jetty.util.thread.strategy.ExecutingExecutionStrategy.invoke(ExecutingExecutionStrategy.java:58)
    at org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceConsume(ExecuteProduceConsume.java:201)
    at org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:133)
    at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:672)
    at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:590)
    at java.lang.Thread.run(Thread.java:748)
    at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
    at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
    at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
    at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:150)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy46.initializeCollection(Unknown Source)
    at eu.etaxonomy.taxeditor.service.CachedCommonServiceImpl.initializeCollection(CachedCommonServiceImpl.java:61)
    at org.hibernate.collection.internal.AbstractPersistentCollection.remoteInitialize(AbstractPersistentCollection.java:1340)
    ... 40 more

Server side stack strace

[cdm_kurs_bupleurum] 21:48:23,862 WARN [qtp759156157-84][or.sp.re.su.RemoteInvocationTraceInterceptor] - Processing of HttpInvokerServiceExporter remote call resulted in fatal exception: eu.etaxonomy.cdm.api.service.ICommonService.initializeCollection
java.lang.NullPointerException
    at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl.initializeCollection(CdmGenericDaoImpl.java:872)
    at eu.etaxonomy.cdm.api.service.CommonServiceImpl.initializeCollection(CommonServiceImpl.java:354)
    at sun.reflect.GeneratedMethodAccessor118.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
    at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
    at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy164.initializeCollection(Unknown Source)
    at sun.reflect.GeneratedMethodAccessor118.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy253.initializeCollection(Unknown Source)
    at sun.reflect.GeneratedMethodAccessor128.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
    at org.springframework.remoting.support.DefaultRemoteInvocationExecutor.invoke(DefaultRemoteInvocationExecutor.java:39)
    at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
    at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
    at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:74)
    at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
    at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
    at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
    at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
    at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:871)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
    at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
    at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:841)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1634)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:213)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
    at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
    at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
    at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1621)
    at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1613)
    at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:541)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
    at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
    at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1584)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
    at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1228)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
    at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:481)
    at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1553)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
    at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1130)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.Server.handle(Server.java:564)
    at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:320)
    at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:251)
    at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
    at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:112)
    at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
    at org.eclipse.jetty.util.thread.Invocable.invokePreferred(Invocable.java:122)
    at org.eclipse.jetty.util.thread.strategy.ExecutingExecutionStrategy.invoke(ExecutingExecutionStrategy.java:58)
    at org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceConsume(ExecuteProduceConsume.java:201)
    at org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:133)
    at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:672)
    at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:590)
    at java.lang.Thread.run(Thread.java:748)

Related issues

Related to EDIT - bug #8752: Matrix Editor: Can fail showing all SpecimenDescriptions in the datasetWorksformeKatja Luther

Actions
Copied to EDIT - bug #8754: DescriptionElements are not deleted with the Descriptive Data Set ResolvedAndreas Müller

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 #1

Updated by Andreas Kohlbecker over 3 years ago

  • Related to bug #8752: Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset added
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 #2

Updated by Andreas Kohlbecker over 3 years ago

  • Description updated (diff)
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 #3

Updated by Andreas Kohlbecker over 3 years ago

  • Description updated (diff)
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 #4

Updated by Andreas Kohlbecker over 3 years ago

  • Copied to bug #8754: DescriptionElements are not deleted with the Descriptive Data Set added
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 #5

Updated by Katja Luther about 3 years ago

  • Target version changed from Release 5.12 to Release 5.13
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 #6

Updated by Andreas Müller about 3 years ago

  • Target version changed from Release 5.13 to Release 5.14
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 #7

Updated by Andreas Müller almost 3 years ago

  • Target version changed from Release 5.14 to Release 5.15
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 #8

Updated by Katja Luther almost 3 years ago

  • Status changed from New to Worksforme

this seems to be solved with fixing the deletion of descriptive datasets. I could not reproduce this exception anymore.

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 #9

Updated by Andreas Müller almost 3 years ago

Andreas K., can you please decide if this needs to be reviewed as you reported the ticket?
If not necessary we should remove target version (as we always do for "Worksforme").

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 #10

Updated by Andreas Kohlbecker almost 3 years ago

Katja Luther wrote:

this seems to be solved with fixing the deletion of descriptive datasets. I could not reproduce this exception anymore.

Did you try to reproduce the bug by using the db dump from #8752 ?

Further review is not needed if this is the case, and you can close the ticket. (remove target version + "Worksforme").

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 #11

Updated by Katja Luther almost 3 years ago

  • Status changed from Worksforme to Resolved

This problem is caused because of a still available selection of the descriptive dataset. This is solved by setting the selection in selection service to null after deleting the descriptive dataset.

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 #12

Updated by Katja Luther almost 3 years ago

This problem was different as I thought before, but now it does not appear anymore with the dump from #8752.

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 #13

Updated by Katja Luther almost 3 years ago

  • Status changed from Resolved to Closed
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