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From 08/20/2019 to 09/18/2019

09/18/2019

07:36 PM bug #8329 (Feedback): Multiple representations exception when adding name relationship with alrea...
Andreas Müller
03:55 PM bug #8329 (Closed): Multiple representations exception when adding name relationship with already...
Played aroung on on rem_conf_am with nightly build and could not reprodcue the problem Patrick Plitzner
06:23 PM Revision 4c331cd7 (cdm-dataportal): fixing and improving test assertions
Andreas Kohlbecker
05:56 PM bug #8034 (Resolved): Recently used references shows all references
fix is committed, please review. Katja Luther
05:51 PM bug #8034: Recently used references shows all references
Patrick Plitzner wrote:
> Hmm, now when I already have a reference for the secundum, the selection dialog only shows...
Katja Luther
05:26 PM bug #8034: Recently used references shows all references
Hmm, now when I already have a reference for the secundum, the selection dialog only shows some of the last used refe... Patrick Plitzner
05:11 PM bug #8034: Recently used references shows all references
Katja Luther wrote:
> Did you selected the book in a selection dialog or only in bulk editor? The recently selected ...
Patrick Plitzner
04:53 PM bug #8034: Recently used references shows all references
Did you selected the book in a selection dialog or only in bulk editor? The recently selected references are only for... Katja Luther
03:42 PM bug #8034: Recently used references shows all references
ok, I tested the recently selected references with Article and Journal as InReference which works fine. Nevertheless ... Patrick Plitzner
03:38 PM bug #8034: Recently used references shows all references
Another thing I tested:
1. I imported a specimen via ABCD import which had the generic reference "DNA_Bank"
1. I ...
Patrick Plitzner
03:35 PM bug #8034: Recently used references shows all references
the reference needs to be an article because therefore an inreference type exist Katja Luther
03:33 PM bug #8034 (Feedback): Recently used references shows all references
I am not sure if I tested this correctly. Here is what I did:
1. I selected a Generic reference as secundum for on...
Patrick Plitzner
05:55 PM Revision 25e92728 (taxeditor): ref #8034: fixes for recently selected references
Katja Luther
05:42 PM Revision 3ea88987 (taxeditor): ref #8034: fix handling with recently selected references in s
Katja Luther
05:36 PM Revision 030ddaa9 (taxeditor): ref #8450 Only save edited rows in matrix editor
Patrick Plitzner
05:05 PM bug #8386 (Closed): Disable admin menu when not logged into a DB
works fine Katja Luther
02:17 PM bug #8386 (Resolved): Disable admin menu when not logged into a DB
fixed with commit:taxeditor|c2b34f0b89feff1b91fdb6eaa3434cad9dfa510f Patrick Plitzner
05:04 PM bug #8533: missing collector and fieldnumber in abcd import
ok, this seems to be a bigger problem.
If you compare your debug output with the two files it seems like it has mi...
Patrick Plitzner
04:47 PM bug #8533 (In Progress): missing collector and fieldnumber in abcd import
I think we have to move this to 5.11 Katja Luther
04:46 PM bug #8533: missing collector and fieldnumber in abcd import
Patrick Plitzner wrote:
> Katja Luther wrote:
> > the collector problem is solved, but the fieldnumber is not deliv...
Katja Luther
04:44 PM bug #8533: missing collector and fieldnumber in abcd import
Katja Luther wrote:
> ah there is another problem, the gathering agent for the tissue is Hutchison and for the tissu...
Patrick Plitzner
04:43 PM bug #8533: missing collector and fieldnumber in abcd import
Katja Luther wrote:
> the collector problem is solved, but the fieldnumber is not delivered. I debugged and also loo...
Patrick Plitzner
04:37 PM bug #8533: missing collector and fieldnumber in abcd import
ah there is another problem, the gathering agent for the tissue is Hutchison and for the tissue sample Lautner Katja Luther
04:34 PM bug #8533: missing collector and fieldnumber in abcd import
the collector problem is solved, but the fieldnumber is not delivered. I debugged and also looked at the output and t... Katja Luther
03:20 PM bug #8533 (Feedback): missing collector and fieldnumber in abcd import
I attached the two sample file: one is the DNA unit the other one the associated tissue sample.
I tested on night...
Patrick Plitzner
05:00 PM feature request #8489: Further issues for DB preferences
move to 5.11 for a last review whether all (wanted) preferences are available as db preferences Katja Luther
04:58 PM task #8458 (In Progress): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
Katja Luther
04:56 PM bug #8494 (In Progress): Better ABCD Preferences Page
I move this to 5.11 to solve the layout issues. Katja Luther
02:39 PM bug #8494: Better ABCD Preferences Page
Andreas Müller wrote:
> >This is fixed but still "Restore default" does not completely remove the preference (and ev...
Katja Luther
02:25 PM bug #8494: Better ABCD Preferences Page
>This is fixed but still "Restore default" does not completely remove the preference (and even does not clear the exi... Andreas Müller
02:23 PM bug #8494: Better ABCD Preferences Page
The "New provider" text field should have a label "New provider" or similar. Also the "Add Provider" button should be... Andreas Müller
02:22 PM bug #8494: Better ABCD Preferences Page
Second time it worked but still there was an empty entry in the provider list Andreas Müller
02:20 PM bug #8494: Better ABCD Preferences Page
Trying to create a new provider results in
~~~
login : admin
editor version : 5.10.0.201909180750
server : loc...
Andreas Müller
02:19 PM bug #8494 (Feedback): Better ABCD Preferences Page
is #8385#note-51 already fixed? It is part of **this** ticket description! (copied from)
The field NomenclaturalCo...
Andreas Müller
01:10 PM bug #8494 (Resolved): Better ABCD Preferences Page
The issues above are solved, so I think we can close this ticket. Katja Luther
04:54 PM Revision fde0968c (cdm-dataportal): fixing and improving test assertions
Andreas Kohlbecker
04:54 PM Revision d8de8d4d (cdm-dataportal): fixing order of typedesignations in registration page
Andreas Kohlbecker
04:53 PM task #8456 (Closed): FieldUnitDTO: remove newInstanceMethod
Katja Luther wrote:
> sorry I missed to add the last commit to this ticket.
Yes, I just realized that, too.
co...
Patrick Plitzner
04:51 PM task #8456 (Resolved): FieldUnitDTO: remove newInstanceMethod
Katja Luther
04:50 PM task #8456: FieldUnitDTO: remove newInstanceMethod
sorry I missed to add the last commit to this ticket. Katja Luther
04:41 PM task #8456: FieldUnitDTO: remove newInstanceMethod
Katja Luther wrote:
> Patrick Plitzner wrote:
> > looks fine. Only on question: Why did you remove the null check w...
Katja Luther
04:39 PM task #8456: FieldUnitDTO: remove newInstanceMethod
Katja Luther wrote:
>
> the null check is now in the gatheringEventDto
The parameter `gathering` is not checked...
Patrick Plitzner
04:30 PM task #8456: FieldUnitDTO: remove newInstanceMethod
Patrick Plitzner wrote:
> looks fine. Only on question: Why did you remove the null check when creating the Gatherin...
Katja Luther
04:08 PM task #8456 (Feedback): FieldUnitDTO: remove newInstanceMethod
looks fine. Only on question: Why did you remove the null check when creating the GatheringEvent -> https://dev.e-tax... Patrick Plitzner
04:04 PM feature request #8350 (Closed): Search dialog for named areas should work with abbreviations
tested on nightly. works fine. Patrick Plitzner
03:51 PM feature request #8123 (Closed): Make available features a DB preference
tested on nightly for local and DB prefs. works fine. Patrick Plitzner
03:43 PM task #8130: Check if related feature data is cleared when supported facts type is changed
Move to next milestone for remaining discussion Patrick Plitzner
03:43 PM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix
Move to next milestone because this is still considered experimental Patrick Plitzner
03:05 PM bug #7321 (Closed): multi-language textfields should not show empty text when there is text
tested on nightly. works fine Patrick Plitzner
02:42 PM Revision c1bd899f (taxeditor): use last selected abcd provider for import
Katja Luther
02:24 PM feature request #8539 (Closed): Add IndividualsAssociation when adding specimens to the character...
IndividualsAssocations are created when adding specimens which do not yet have one.
Still experimental so no revie...
Patrick Plitzner
02:22 PM feature request #8335 (Closed): Store character matrix table state as DB preference
closing the ticket -> created a new ticket for using the preference cache #8552 Patrick Plitzner
02:22 PM bug #8552 (Closed): Avoid DB call for matrix state DB preferences
Copied from #8335:
looks fine, but if you want to avoid a db call, you can use CdmPreferenceCache.instance().get(P...
Patrick Plitzner
02:19 PM bug #8488 (Resolved): Characters can not be added to feature trees
Patrick Plitzner
02:11 PM Revision 5bceba97 (taxeditor): ref #8494: save last abcd import configurator
Katja Luther
01:46 PM feature request #8469 (In Progress): Open PolytomousKeyGenerator issues
Andreas Müller
01:39 PM bug #8517 (Feedback): SpecimenOrObservation: data from protected titleCache missig in portal pages
This seems to work but handling the protected title cache of the **field** unit in the **derived**unit cachestrategy ... Andreas Müller
01:20 PM Revision 547189fd (taxeditor): ref #8494: abcd config nom. code is set to default nom. code
Katja Luther
01:03 PM Revision 5d616c75 (taxeditor): fix taxon search configurator preference
Katja Luther
12:46 PM Revision 49fbe818 (cdmlib): add ExactValue to possible input for PolytomousKeyGenerator
Andreas Müller
11:43 AM Revision e07260d7 (cdmlib): some cleanup in PolytomousKeyGenerator
Andreas Müller
11:39 AM Revision 430c5895 (taxeditor): fix taxon search configurator preference
Katja Luther
10:49 AM Revision b42c7515 (cdmlib-apps): ref #8509 fix missing IsraeliExclusiveEconomicZone issue
Andreas Müller
10:48 AM Revision c32dfb15 (cdmlib-apps): ref #1444, ref #8508, ref #8509 improve ERMS notes pipeline
Andreas Müller
10:44 AM Revision 23a201e7 (cdmlib-apps): ref #1444, ref #8508, ref #8508 Finish ERMS image import and som...
Andreas Müller
10:41 AM Revision 79c223b6 (cdmlib-apps): cleanup
Andreas Müller
10:37 AM Revision 93243e0f (cdmlib): ref #1444 fix missing status in DistributionCreation for ERMS
Andreas Müller
10:36 AM Revision 2dd7e54d (cdmlib): cleanup
Andreas Müller
09:36 AM Revision 9fb73f2a (taxeditor): minor in l10n
Katja Luther

09/17/2019

05:03 PM Revision 41027fc8 (cdmlib): ref #1444 fix feature creation mapper on setting the feature to the o...
Andreas Müller
05:03 PM Revision db5a2cc2 (cdmlib): cleanup
Andreas Müller
04:41 PM Revision c2f509ab (taxeditor): ref #8450 Use cached display data for matrix cells
pplitzner
04:40 PM Revision 14ce7344 (cdmlib): ref #8450 Cache display data in row wrapper
pplitzner
04:26 PM bug #8382 (Resolved): Local Supplemental Data Source Preferences should reflect the state of admi...
Katja Luther
04:26 PM bug #8382: Local Supplemental Data Source Preferences should reflect the state of admin preferences
this is fixed with #8489 Katja Luther
03:33 PM Revision 64705220 (taxeditor): ref #8329: fix multiple representation exception
Katja Luther
03:33 PM bug #8329 (Resolved): Multiple representations exception when adding name relationship with alrea...
with the last commit, I could not reproduce this problem anymore. please review. Katja Luther
03:23 PM bug #8551 (New): Some preferences should be available without login
Some preferences like the application language should be available even if not logged into a database.
Currently t...
Andreas Müller
02:59 PM bug #7321: multi-language textfields should not show empty text when there is text
this is fixed.
please review.
Katja Luther
02:59 PM bug #7321 (Resolved): multi-language textfields should not show empty text when there is text
Applied in changeset commit:taxeditor|3ac05bdb7abe97395018f3fbd57ed143c1a018d7. Katja Luther
02:59 PM bug #8034: Recently used references shows all references
Applied in changeset commit:taxeditor|44bee70cbd379cac7115a2e9de9fda497fd4894f. Katja Luther
02:17 PM bug #8034 (Resolved): Recently used references shows all references
this is fixed. please review.
For review you should open a reference selection dialog and choose a journal.
In a...
Katja Luther
02:58 PM Revision 3ac05bdb (taxeditor): fix #7321: check whether text of default language is set otherwise...
Katja Luther
02:58 PM Revision 44bee70c (taxeditor): fix #8034: preselected references should have correct type
Katja Luther
02:37 PM bug #7766 (In Progress): Remaining issues for using relationship DTO webservice in portal
The sort order seem to have problems. Is this an regression or has this point be missed? Andreas Kohlbecker
02:37 PM Revision 91408e53 (cdmlib-apps): ref #8509 increase number of taxa for description export partition
Andreas Müller
02:36 PM Revision 405dc768 (cdmlib-apps): ref #1444, ref #8508, ref #8509 some improvements on ERMS taxon...
Andreas Müller
02:35 PM Revision 047b2976 (cdmlib-apps): ref #1444, ref #8508, ref #8509 some improvements on ERMS notes...
Andreas Müller
02:33 PM feature request #8092 (Closed): set default for term and vocabulary selection preferences in sele...
I think this is solved with #8489 Katja Luther
02:32 PM Revision 7487f98f (cdmlib-apps): ref #1444, ref #8508, ref #8509 improve ERMS vernacular name tr...
Andreas Müller
02:30 PM Revision fa27ce80 (cdmlib-apps): ref #1444, ref #8508, ref #8509 improve ERMS distribution pipeline
Andreas Müller
02:29 PM feature request #8335 (Feedback): Store character matrix table state as DB preference
looks fine, but if you want to avoid a db call, you can use CdmPreferenceCache.instance().get(PrefKey key)
instead ...
Katja Luther
02:24 PM Revision 1437e192 (cdmlib-apps): ref #8509 improve isPesi taxon handling for export
Andreas Müller
02:23 PM Revision f8226169 (cdmlib-apps): ref #1444, ref #8508, ref #8509 improve rank handling in ERMS pi...
Andreas Müller
02:19 PM Revision 6535f3fe (cdmlib-apps): ref #8509 latest changes to PesiExportActivatorERMS
Andreas Müller
02:19 PM Revision c3b66cac (cdmlib-apps): ref #1444 latest changes to ErmsImportActivator
Andreas Müller
02:18 PM Revision d7f95f72 (cdmlib-apps): ref #1444, ref #8508, ref #8509 improve rank handling in ERMS pi...
Andreas Müller
02:12 PM Revision e126ec3a (cdmlib): ref #8034: filter last selected references by inReference type
Katja Luther
02:12 PM Revision 6af26c13 (cdmlib): ref #8034: filter last selected references by inReference type
Katja Luther
02:10 PM Revision f953097d (cdmlib-apps): ref #8509 adapt log4j.properties for PESI export
Andreas Müller
02:09 PM Revision 3b2e07f3 (cdmlib-apps): adapt FaueEuErmsMergeActivator to TaxonName.addRelationship changes
Andreas Müller
02:08 PM Revision 668cae43 (cdmlib-apps): ref #1444 adapt ERMS vernacular name import
Andreas Müller
02:07 PM Revision 3c993316 (cdmlib-apps): ref #8509 handle doEmpty tables for PesiDescriptionExport
Andreas Müller
02:05 PM Revision b4ffff96 (cdmlib-apps): adapt FaueEuTaxonNameImport to TaxonName.addRelationship changes
Andreas Müller
02:04 PM Revision a0f9168d (cdmlib-apps): ref #8508 latest changes to ERMS pipeline validation
Andreas Müller
02:03 PM Revision 1491a132 (cdmlib-apps): cleanup
Andreas Müller
02:00 PM Revision 710a5727 (taxeditor): ref #8450 Display full statistical measure label
Patrick Plitzner
01:54 PM Revision d8053698 (cdmlib): ref #8509 reduce logging for multiple sources problem
Andreas Müller
01:54 PM Revision 1adda666 (cdmlib): ref #1444 fix image import mapping
Andreas Müller
01:54 PM Revision 9db13e41 (cdmlib): fix (revert) incorrect signature in DbLanguageMapper
Andreas Müller
01:54 PM Revision 0997cbeb (cdmlib): update Feature mapper to set the feature immediately to the descripti...
Andreas Müller
01:54 PM Revision 865c4dc7 (cdmlib): cleanup
Andreas Müller
12:57 PM Revision c88416e1 (cdm-dataportal): ref #7766 completing test case
Andreas Kohlbecker
12:36 PM bug #8550 (New): taxon concept relationship editor is hard to find
It is hard to find the editor for taxon relationships. The UI gives not hints.
![](picture380-1.png)
This view...
Andreas Kohlbecker
12:34 PM feature request #8350 (Resolved): Search dialog for named areas should work with abbreviations
the search dialog searches for the selected abbreviation when the preference is set (default is the titlecache).
Y...
Katja Luther
12:31 PM task #8458 (Resolved): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
Applied in changeset commit:cdmlib|6b929840715bd88dc66fd3f0cc9abd88530b2487. Katja Luther
12:31 PM Revision 6b929840 (cdmlib): fix #8458: remove unused parameter
Katja Luther
12:25 PM bug #8531: factual data and media view always opened when opening taxon
the editor now remember whether the facts and media view were open before distribution editor was opened and dependin... Katja Luther
12:21 PM task #8425 (Closed): FieldUnitDTO: remove taxonRelatedDerivedUnits
it is removed. Katja Luther
12:19 PM Revision a853ae40 (cdmlib): fix NPE in FieldUnitDto
Katja Luther
12:07 PM Revision 87b9d856 (taxeditor): ref #8489: show local values in local distr status table
Katja Luther
11:33 AM feature request #8409 (Closed): add nomenclatural code select to NameRelationField
Wolf-Henning Kusber wrote:
> works for me as implemented.
>
> Would like to see for all codes ICBN (in capital le...
Andreas Kohlbecker
11:18 AM feature request #8409: add nomenclatural code select to NameRelationField
works for me as implemented.
Would like to see for all codes ICBN (in capital letters) except of 2011, and 2018 = ...
Wolf-Henning Kusber
11:11 AM feature request #8409: add nomenclatural code select to NameRelationField
> Was genau ist mit NameRelationField gemeint? Wir haben so etwas bisher nur bei "Orthographical correction"
Das g...
Andreas Kohlbecker
10:52 AM feature request #8409: add nomenclatural code select to NameRelationField
Rückfrage: bei allen Namen ist die "NomenclaturalStatusRow". Was genau ist mit NameRelationField gemeint? Wir haben s... Wolf-Henning Kusber
11:31 AM task #8456: FieldUnitDTO: remove newInstanceMethod
please review Katja Luther
11:31 AM task #8456 (Resolved): FieldUnitDTO: remove newInstanceMethod
Applied in changeset commit:cdmlib|ed34f59fbc07b3029f7c6f939d2108fc324a7d08. Katja Luther
11:31 AM Revision ed34f59f (cdmlib): fix #8456: remove newInstance methof in FieldUnitDTO
Katja Luther
11:24 AM Revision bd131507 (cdm-dataportal): ref #8134 fixing wrong case in type designation status labels
Andreas Kohlbecker
11:16 AM Revision f186b3b2 (cdmlib): add citation to type statement in cdm light export
Katja Luther
11:15 AM Revision f6bc63b0 (cdm-dataportal): avoiding access to unset variable
Andreas Kohlbecker
11:07 AM bug #8376 (Closed): RegistrationWorkingsetEditor: prevent clicking any futher buttons after the o...
Andreas Kohlbecker
10:01 AM bug #8376: RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting o...
resolved, ticket can be closed. Wolf-Henning Kusber
11:07 AM bug #8377 (Closed): TypeDesignationsEditors: Delete must not be allowe before the workingset is s...
Andreas Kohlbecker
10:12 AM bug #8377: TypeDesignationsEditors: Delete must not be allowe before the workingset is saved
no problems with name types and specimen types to not save erroneously opened editors or close editors with informati... Wolf-Henning Kusber
11:07 AM bug #8527 (Closed): TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when ...
Andreas Kohlbecker
10:39 AM bug #8527: TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is...
No problems with orthographical corrections. Ticket can be closed. Wolf-Henning Kusber
10:33 AM bug #8527: TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is...
So far no problems with orthographical variants.
No problems with validations. Ex-author teams are shown once the ...
Wolf-Henning Kusber
11:06 AM feature request #8408 (Closed): add nomenclatural code select to NomenclaturalStatusRow
Andreas Kohlbecker
10:49 AM feature request #8408: add nomenclatural code select to NomenclaturalStatusRow
issue resolved, ticket can be closed. Wolf-Henning Kusber
11:06 AM feature request #8342 (Closed): shift field Field number
Andreas Kohlbecker
09:57 AM feature request #8342: shift field Field number
perfect, ticket can be closed. Wolf-Henning Kusber
11:04 AM Revision 9f9135ff (cdm-dataportal): avoiding access to unset variable
Andreas Kohlbecker
11:02 AM feature request #8549 (New): while abcd import problems should be logged more in detail
this is a ticket to collect all that needs to be handled more in detail while abcd import:
problems like different...
Katja Luther
10:59 AM bug #8548 (Closed): ReferenceEditor: Layout problem when opening Reference editor (new journal, n...
Layout when opening Reference editor (new journal, new book, new thesis).
see test system, as of 17 Sept 2019. are...
Wolf-Henning Kusber
10:56 AM bug #8533 (Resolved): missing collector and fieldnumber in abcd import
problems like this should be handled more in detail and the user should be informed about this problems. Therefore I ... Katja Luther
10:49 AM feature request #8123 (Resolved): Make available features a DB preference
Katja Luther
10:44 AM feature request #8123: Make available features a DB preference
Name facts and taxon facts are preferences available as local and db preference, at the moment there is no vocabulary... Katja Luther
10:42 AM bug #8547: newly created article with new journal does not appear in selection dialog
this problem appears only when the newly created in-reference is not of the type journal. Katja Luther
10:18 AM bug #8547 (New): newly created article with new journal does not appear in selection dialog
mail from WB:
Hallo,
ich habe ausgehend vom Details view eine neue NomReferenz (Artikel) eingegeben. Dabei musste...
Katja Luther
10:21 AM Revision 8c34de8f (cdmlib): Fix potential NPE
Patrick Plitzner
08:48 AM Revision 0fd965ee (cdm-dataportal): ref #8134 simplifying code
Andreas Kohlbecker
08:40 AM Revision 85ac09e7 (cdm-dataportal): ref #8134 reverting change which caused duplication of annota...
Andreas Kohlbecker
08:27 AM Revision f3baa35e (cdm-dataportal): fixing bug in initialization of feature_block_distribution
Andreas Kohlbecker

09/16/2019

02:48 PM Revision db45a69b (taxeditor): Fix potential NPE
pplitzner
02:35 PM Revision f8fa200d (taxeditor): ref #8489: code cleaning
Katja Luther
01:59 PM feature request #8489 (In Progress): Further issues for DB preferences
Katja Luther
01:58 PM Revision 6fd0ac3c (taxeditor): ref #8489: improve table on dist status preference page
Katja Luther
01:29 PM Revision 12c30592 (cdmlib): ref #8450 Fix potential mysql syntax exception
Patrick Plitzner
12:45 PM Revision b2a4dcd5 (cdmlib-apps): adapt app-import to changes in taxonName.addRelationship
Andreas Müller
12:41 PM Revision 0813a168 (taxeditor): fix potential NPE in NameDescriptionFilter
Andreas Müller
12:36 PM Revision 9557c1a9 (taxeditor): fix potential NPE in NameDescriptionFilter
Andreas Müller
12:25 PM Revision 29d0296e (taxeditor): fix potential NPE in NameDescriptionFilter
Andreas Müller
12:03 PM task #8546 (New): type specimen editor: published in vs. designated by
Normally the bibliographical authors are also nomenclatural authors who designate types, so far no problem.
If a tre...
Wolf-Henning Kusber
11:19 AM bug #8545 (New): Name editor: Erroneous status in Status type cannot be made withdrawn
Example: Navicula tenuis F.Meister was erroneously set as "illegitimate"
It was not possible to make this reversible...
Wolf-Henning Kusber
10:33 AM Revision 19b5c3ee (cdmlib): Revert "Use only aggregated taxon descriptions for key generation"
This reverts commit d6567bcdd0ad9fc7768b7ab85be7f09386c05c6b. Patrick Plitzner
10:10 AM bug #8494: Better ABCD Preferences Page
now the Unit ID mapping is a combo box and the dna provider is a combo box containing the providers defined in the pr... Katja Luther
09:34 AM Revision d2389430 (cdmlib): ref #8450 Load supported categorical states in service layer
pplitzner
09:32 AM Revision 1d424e89 (taxeditor): ref #8450 Load supported categorical states in service layer
pplitzner
09:14 AM Revision 7b1740fe (cdmlib): ref #8489: PreferencePredicate update
Katja Luther
08:46 AM Revision d9a1b833 (cdmlib): ref #8450 Delete association taxon description when deleting specimen
pplitzner
06:46 AM Revision 656fdfa3 (taxeditor): Fix potential NPE
pplitzner
06:46 AM Revision 34c65e31 (taxeditor): Set taxonomic scope for generated polytomous key
pplitzner
06:46 AM Revision c0ad6a65 (taxeditor): Fix potential NPE
pplitzner
06:46 AM Revision 40f360dd (taxeditor): ref #8539 Update local data set after aggregation
pplitzner
06:46 AM Revision ddb0eef3 (taxeditor): ref #8539 Add specimens to matrix as long running task
pplitzner
06:46 AM Revision c1bf973e (taxeditor): ref #8539 Update local data set after adding specimen
pplitzner
06:45 AM Revision d6567bcd (cdmlib): Use only aggregated taxon descriptions for key generation
pplitzner
06:45 AM Revision ef0587b0 (cdmlib): ref #8539 Set data set for aggregation
pplitzner
06:45 AM Revision bbd7e287 (cdmlib): ref #8539 Add specimens to matrix as long running task
pplitzner
06:45 AM Revision c67a9006 (cdmlib): Fix potential NPE
pplitzner
06:45 AM Revision 92044c86 (cdmlib): Add missing classes to PermissonClass
pplitzner

09/13/2019

02:10 PM Revision 85c6cfb6 (taxeditor): ref #8488: adapt all term related preferences, abcd preference page
Katja Luther
11:22 AM Revision c9ac7f0d (taxeditor): ref #8489: adapt commonname named area voc selection to other voc ...
Katja Luther
11:07 AM Revision e7cdc2fb (taxeditor): ref #8385: better handling of distr preferences and term related p...
Katja Luther
11:04 AM Revision e1be2e3b (taxeditor): code cleaning
Katja Luther
11:02 AM Revision b6ea6bbc (cdmlib): ref #8385: methods for better voc selection pref pages
Katja Luther
10:03 AM Revision 1805001b (taxeditor): adaptions to changes in PreferencesUtil
Katja Luther

09/12/2019

02:26 PM Revision bf26c791 (taxeditor): Fix potential NPE
Patrick Plitzner
02:26 PM Revision e87ad53b (taxeditor): Disabling aggregation charts
Patrick Plitzner
02:26 PM Revision d19ffefd (taxeditor): ref #8539 Performance and session handling fixes
Patrick Plitzner
02:26 PM Revision 0e1a7631 (taxeditor): ref #8539 Add association taxon description to descriptive data set
Patrick Plitzner
02:26 PM Revision 47def0a1 (cdmlib): ref #8539 Filter aggregated, literature or default descriptions
Patrick Plitzner
02:26 PM Revision ff159227 (cdmlib): ref #8539 Performance and session handling fixes
Patrick Plitzner
02:26 PM Revision 47c3158d (cdmlib): ref #8539 Add taxon description to wrapper
Patrick Plitzner
01:54 PM Revision 7915799e (taxeditor): ref #8350: searchfield for namedArea is configurable
Katja Luther
01:46 PM Revision f541ce53 (cdmlib): ref #8350: create new predicate for namedArea search by abbreviation
Katja Luther
01:09 PM feature request #8544 (New): check for number of synonyms entered in name editor by copy paste an...
mail WB:

ich habe gerade aus Versehen die Fehlermeldung in den Name-Editor kopiert. Das gibt eine SEHR lange Sy...
Katja Luther
11:44 AM feature request #8350 (In Progress): Search dialog for named areas should work with abbreviations
Katja Luther
10:36 AM Revision e5299170 (cdmlib-apps): cleanup
Andreas Müller
10:29 AM Revision 9bc63b7a (cdmlib): cleanup
Andreas Müller

09/11/2019

07:25 PM feature request #8134: Implement verbatim type information in dataportal
Andreas Kohlbecker wrote:
> The textual type designation are now at least shown in the taxon synonymy and in the nam...
Andreas Müller
04:53 PM feature request #8134: Implement verbatim type information in dataportal
test data dumped and stored in _testdata/edit-int/testdb/5.10/cdm_integration_reference-2019-09-11-001.sql.bz2 Andreas Kohlbecker
04:41 PM feature request #8134: Implement verbatim type information in dataportal
The textual type designation are now at least shown in the taxon synonymy and in the name page.
Open issues are:
...
Andreas Kohlbecker
11:50 AM feature request #8134 (In Progress): Implement verbatim type information in dataportal
Andreas Kohlbecker
11:50 AM feature request #8134: Implement verbatim type information in dataportal
[Feedback from Walter]
Hallo,
mit Bezug auf das Portal folgender Vorschlag meinerseits:
Wenn nach dem Ausgabet...
Andreas Kohlbecker
10:19 AM feature request #8134 (New): Implement verbatim type information in dataportal
Andreas Müller
10:18 AM feature request #8134: Implement verbatim type information in dataportal
Andreas Kohlbecker wrote:
> Hi Andreas,
>
> the verbatim type information is represented by the class `TextualTyp...
Andreas Müller
08:34 AM feature request #8134 (Feedback): Implement verbatim type information in dataportal
Hi Andreas,
the verbatim type information is represented by the class `TextualTypeDesignation`. This class has a b...
Andreas Kohlbecker
07:18 PM bug #4964: footnotes for taxonRelationships annotations should be rendered together
The other milestone should not be used anymore Andreas Müller
04:37 PM Revision 2d95e99f (cdm-dataportal): ref #8134 displaying textual type designations in the taxon s...
Andreas Kohlbecker
04:30 PM feature request #8538 (Closed): add text_l10n for TextualTypeDesignation.text to web service resp...
Andreas Kohlbecker
12:53 PM feature request #8538 (Resolved): add text_l10n for TextualTypeDesignation.text to web service re...
Applied in changeset commit:cdmlib|c4942e5e5d1cc2acc566cf357a22a90a140ca5e0. Andreas Kohlbecker
08:49 AM feature request #8538 (Closed): add text_l10n for TextualTypeDesignation.text to web service resp...
The free text in `TextualTypeDesignation` needs to be localized for web service responses. See `DescriptionElementBea... Andreas Kohlbecker
04:29 PM Revision 5dbe78e5 (cdmlib): adding annotations endpoint to TypeDesignationController
Andreas Kohlbecker
03:50 PM Revision cae05f09 (cdmlib): ref #8538 initalization of type designation sources
Andreas Kohlbecker
03:23 PM Revision f814b2cd (cdm-dataportal): ref #8543 documenting foonote-key-suggestino handling in some...
Andreas Kohlbecker
03:19 PM task #8543 (New): overcome distinction of annotation and other foonotes
The distinction of annotation and other foonotes is causing problems as reported in #2602 and in #4964
Moreover it...
Andreas Kohlbecker
02:03 PM Revision 85f2a3c3 (taxeditor): ref #8539 Add association when adding specimens to the matrix
Patrick Plitzner
02:03 PM Revision 64952a5f (taxeditor): typo
Patrick Plitzner
02:03 PM Revision d956f204 (taxeditor): ref #8450 Show recordBasis and isIndividualsAssociation in table
Patrick Plitzner
02:02 PM Revision d6cce84d (cdmlib): ref #8539 Add new DescriptionType for IndividualsAssociations
Patrick Plitzner
02:02 PM Revision 0ef48948 (cdmlib): ref #8450 Add recordBasis and isIndividualsAssociation to wrapper
Patrick Plitzner
01:40 PM Revision 7fd4839f (cdmlib-apps): ref #1444 fix author handling for ERMS sources import
Andreas Müller
01:39 PM Revision e23437fb (cdmlib-apps): ref #1444 fix taxon handling for source of synonymy (but probabl...
Andreas Müller
01:38 PM Revision 9ec5ede2 (cdmlib-apps): ref #8508 latest changes to ERMS pipeline validator
Andreas Müller
01:37 PM Revision 768bf497 (cdmlib-apps): cleanup
Andreas Müller
01:36 PM Revision bee39571 (cdmlib-apps): ref #8509 add last action mapping to PesiDescriptionExport
Andreas Müller
01:35 PM Revision e91902c3 (cdmlib-apps): ref #8509 fix empty list bug for pesi RelTaxon export
Andreas Müller
01:34 PM Revision 1030c26a (cdmlib-apps): ref #8509 cleanup and handle nomCode not as class variable
Andreas Müller
01:29 PM Revision 8687bbb5 (cdmlib-apps): ref #1444 improve vernacular import (ERMS)
Andreas Müller
01:26 PM Revision b2956a5e (cdmlib-apps): ref #8509 add Subterclass, Parvorder and Infrakingdom, adapt nu...
Andreas Müller
01:17 PM Revision be6b41e5 (cdmlib-apps): cleanup
Andreas Müller
01:05 PM Revision 35b3906e (cdmlib): cleanup
Andreas Müller
01:05 PM feature request #8542 (New): TaxEditor only remembers the last db and credentials not last db for...
mail AM:
derzeit scheint es so zu sein, dass sich der TaxEditor nur die allgemein zuletzt verwendete DB + credenti...
Katja Luther
01:04 PM bug #8541 (New): Unify Phylum and Division
According to ICNAFP (https://www.iapt-taxon.org/nomen/pages/main/art_3.html) phylum and division are the same. Also i... Andreas Müller
01:03 PM feature request #8540 (New): for localhost mgd the name of the db is not shown in title
mail AM:
bei Verwendung von Localhost Mgd. Wird derzeit die DB nicht im Titel angezeigt. Das ist gerade etwas st...
Katja Luther
12:53 PM Revision c4942e5e (cdmlib): fix #8538 serialization of TextualTypeDesignation.text as text_l10 im...
Andreas Kohlbecker
12:51 PM task #8513 (Closed): CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator()
everything works as expected Andreas Kohlbecker
12:50 PM task #8505 (Closed): ConfigFileUtil: turn all spring bean methods into not statical methods.
fully solved and working as expected since there are no longer any problems in the dependent products Andreas Kohlbecker
11:48 AM feature request #8539 (Closed): Add IndividualsAssociation when adding specimens to the character...
Patrick Plitzner
10:21 AM Revision 983f0766 (cdmlib): ref #8526: fix failing test in editor
Katja Luther
10:12 AM Revision eeaeb3d1 (taxeditor): fix failing test
Katja Luther
10:10 AM Revision 2b83f448 (taxeditor): fix NPE for inverse TaxonrelationshipTypeInverseContainer
Katja Luther
10:10 AM Revision 6b77cd39 (taxeditor): ref #8526: remove workaround for hotfix
Katja Luther
09:30 AM Revision 95468153 (cdmlib): ref #8526: fix failing test
Katja Luther
09:21 AM bug #8535: Connect Dialog: Connect failure warning unreadable
Thank you for this screenshot. This clarifies the situation. There are a couple of eclipse bugs due to which eclipse ... Andreas Kohlbecker
08:28 AM bug #8535: Connect Dialog: Connect failure warning unreadable
This is how it looks on Windows:
![](picture342-2.png)
Should look similar after changing for linux. But open ...
Andreas Müller
06:57 AM bug #8535: Connect Dialog: Connect failure warning unreadable
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > This is only an issue on linux.
>
> Maybe only for KDE. @P...
Patrick Plitzner
09:05 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
moving to release 5.10 as this is prerequisite for #7696 Andreas Kohlbecker
09:00 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
The `TextualTypeDesignation` also need to be handled by the `TypeDesignationSetManager` currently the controller meth... Andreas Kohlbecker

09/10/2019

09:22 PM Revision cfcd10fd (cdmlib): ref #8526: fix swap syn and acc taxon in service method
Katja Luther
06:11 PM Revision b7e96f18 (cdm-dataportal): fixing typo in class attribute
Andreas Kohlbecker
05:45 PM bug #8537 (New): Connect Dialog: Connect failure warning can be missleading
When attempting to connect with invalid credentials the "Connect Dialog" reports this incident with an in-appropriate... Andreas Kohlbecker
05:33 PM bug #8535: Connect Dialog: Connect failure warning unreadable
Andreas Müller wrote:
> This is only an issue on linux.
Maybe only for KDE. @Patrick: Do you have similar experie...
Andreas Kohlbecker
05:20 PM bug #8535: Connect Dialog: Connect failure warning unreadable
This is only an issue on linux. Andreas Müller
05:15 PM bug #8535 (New): Connect Dialog: Connect failure warning unreadable
The relative luminance of font color and background are too close. Enhance the contrast for better readability.
![...
Andreas Kohlbecker
05:20 PM bug #8536 (Duplicate): Connect Dialog: UI elements exceed the available space
Depending on the system font dpi settings and "Widget style" parts of the Connect Dialog can become unreadable (see s... Andreas Kohlbecker
05:06 PM report #8534 (New): Usability/UX ticket overview
This ticket gives an overview on Usability/UX issues in the Taxeditor.
*Although user experience design (UX Desi...
Andreas Kohlbecker
01:33 PM Revision 16031bd8 (taxeditor): Merge branch 'hotfix/5.9.4'
jenkins
01:29 PM Revision 02a1a17e (taxeditor): ref #8238 Allow adding subtypes to term trees
pplitzner
01:22 PM Revision 9b84aae8 (taxeditor): Minor output formatting
Patrick Plitzner
01:16 PM Revision 32d2424e (taxeditor): Extract utility method for setText() without ModifyEvent
Patrick Plitzner
01:15 PM Revision 2394b07d (cdmlib): ref #8526: fix swap syn and acc taxon in service method
Katja Luther
12:22 PM Revision 736f31ef (taxeditor): fix #8532: fix missing selection in common name language combo
Katja Luther
12:07 PM Revision 4e4592ee (taxeditor): Updated version in pom / project files to taxeditor version : 5.9....
jenkins
12:05 PM Revision a3a55498 (cdmlib): ref #8533: check for all fields in gatheringEvent whether it is set a...
Katja Luther
11:28 AM bug #8533 (Closed): missing collector and fieldnumber in abcd import
when importing specimen/dna as associated units where the gathering event information is not complete in one of the d... Katja Luther
11:23 AM feature request #8014: Label wording im UI Name Editor
yes, perfectly implemented, thanks Wolf-Henning Kusber
11:17 AM feature request #8014 (Closed): Label wording im UI Name Editor
Andreas Kohlbecker
11:16 AM feature request #8014: Label wording im UI Name Editor
I implemented it exactly as suggested in the screenshot which is attached to the decription of this ticket:
Sugg...
Andreas Kohlbecker
10:57 AM feature request #8014: Label wording im UI Name Editor
"Replaced synonym" as decided, fine.
"Validation of": the idea was "Validation of designation" this would be the cor...
Wolf-Henning Kusber
11:03 AM bug #8462 (Closed): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWor...
agreed. Andreas Kohlbecker
09:25 AM bug #8462 (Resolved): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationW...
New species name with new genus with new replaced synonym with new orthographic variant successfully tested. I think ... Wolf-Henning Kusber
08:39 AM bug #8462 (Feedback): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationW...
the orthographic variant could also be tested, but I think your tests have sufficient coverage if you have started a ... Andreas Kohlbecker
10:14 AM bug #8532 (Resolved): common name language selection is not selected
Applied in changeset commit:taxeditor|c2a852f6e6b376780709a8da2ac614b1baf64bef. Katja Luther
10:13 AM bug #8532 (Resolved): common name language selection is not selected
Hallo Katja,
in nightly und jetzt auch auf Prduction getestet (mit Cichorieen – Cichorium endivia – Common Name „B...
Katja Luther
10:14 AM Revision c2a852f6 (taxeditor): fix #8532: fix missing selection in common name language combo
Katja Luther

09/09/2019

06:50 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
Tested: new genus with new reference: no problems
Tested: new basionym or replaced synonym with new reference: no pr...
Wolf-Henning Kusber
03:34 PM bug #8374 (Duplicate): Save genus generated for a species with a different reference
duplicates #8462 Andreas Kohlbecker
03:10 PM feature request #8014: Label wording im UI Name Editor
done, please review. Andreas Kohlbecker
03:09 PM feature request #8014 (Resolved): Label wording im UI Name Editor
Applied in changeset commit:cdm-vaadin|218b286e1ebf5a962c239f2bd726df714652257e. Andreas Kohlbecker
03:09 PM Revision 218b286e (cdm-vaadin): fix #8014 improving lables related to validation and replaced bas...
Andreas Kohlbecker
01:21 PM bug #8531 (In Progress): factual data and media view always opened when opening taxon
Katja Luther
01:20 PM bug #8531 (Resolved): factual data and media view always opened when opening taxon
Katja Luther
01:02 PM bug #8531 (Closed): factual data and media view always opened when opening taxon
the factual data and media view should stay closed when opening a new taxon.
when opening the distribution editor th...
Katja Luther
01:16 PM Revision 4297a77c (taxeditor): ref #8531: open facts view only if it was open before
Katja Luther
01:06 PM Revision 0c80b317 (taxeditor): ref
Katja Luther
01:05 PM Revision bcf07bcc (taxeditor): ref #8385: minor in preferencesUtil
Katja Luther
11:54 AM feature request #8528: new author should be entered atomised
If possible we should make this configurable. I guess there is a reason why we currently have it as it is. Andreas Müller
09:28 AM feature request #8528 (New): new author should be entered atomised
mail of ERS:
wenn man einen neuen Autoren einer bibliographischen Referenz eingeben will, ist der Cache default-m...
Katja Luther
11:05 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
Alles war vorher abgespeichert. Nur existierenden Type-Text aufgemacht, Text hinzugefügt, gespeichert.
~~~
login ...
Katja Luther
11:04 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
Hallo,
der Fehler scheint bei einfachen nom. details nicht aufzutauchen, also wenn nur eine Seitenangabe vorliegt.
...
Katja Luther
11:04 AM bug #8530: Multiple Representation Exceptions when editing Textual Type Designations
Hallo,
und jetzt einfach nach Anfügen der nom. Referenz des Synonyms und speichern – der Name war offenbar noch nich...
Katja Luther
11:04 AM bug #8530 (New): Multiple Representation Exceptions when editing Textual Type Designations
there is again a multiple representation exception when editing nomenclatural reference and textual type designation.... Katja Luther
10:02 AM feature request #8529 (New): [DISCUSS]Display of aggregated descriptions
NK:
Für die Ausgabe der Daten im Portal sind sicher noch darstellungstechnische Anpassungen nötig, ich stelle mir ...
Patrick Plitzner
07:55 AM Revision 5d0c723b (taxeditor): setup project: forcing update of snapshot builds
Andreas Kohlbecker
07:53 AM Revision e0a54776 (taxeditor): fixing broken imports
Andreas Kohlbecker

09/06/2019

10:59 PM bug #8527: TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is...
fixed! Please review once the server is updated. Andreas Kohlbecker
10:58 PM bug #8527 (Resolved): TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost whe...
Applied in changeset commit:cdm-vaadin|81472d534399543096e4e64d32b0026f5a8a6023. Andreas Kohlbecker
09:58 PM bug #8527 (Closed): TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when ...
# THIS BUG IS CRITICAL SINCE IT CAN CAUSE UN-NOTICED DATA LOSS!!!!!!!!
This bug affects the widgets for 'Validati...
Andreas Kohlbecker
10:58 PM Revision 81472d53 (cdm-vaadin): fix #8527 fixing loss of name relations when saving the name edit...
Andreas Kohlbecker
10:29 PM Revision 20abbff9 (taxeditor): ref #8398 adapting taxeditor to changes in NameRelationship
Andreas Kohlbecker
10:04 PM feature request #8408: add nomenclatural code select to NomenclaturalStatusRow
please review once the server is up to date Andreas Kohlbecker
07:38 PM feature request #8408 (Resolved): add nomenclatural code select to NomenclaturalStatusRow
Applied in changeset commit:cdm-vaadin|ee2bbfeb4aaffddede5d2788b9e3db733282e591. Andreas Kohlbecker
10:04 PM feature request #8409: add nomenclatural code select to NameRelationField
please review once the server is up to date Andreas Kohlbecker
10:02 PM feature request #8409 (Resolved): add nomenclatural code select to NameRelationField
Applied in changeset commit:cdm-vaadin|7ee1c79ac0fd622d7a7e7d8acf3963aaae2cf109. Andreas Kohlbecker
10:01 PM Revision 7ee1c79a (cdm-vaadin): fix #8409 adding select for code editions to NameRelationField
Andreas Kohlbecker
09:37 PM Revision 29de4478 (cdmlib): ref #8398 adding codeEdition to NameRelationship constructors and to ...
Andreas Kohlbecker
09:34 PM feature request #8398: Add nomenclatural code edition to ruleConsidered
excellently implemented, thanks a lot!
I extended the protected constructors in `NameRelationship` and the related...
Andreas Kohlbecker
07:38 PM Revision ee2bbfeb (cdm-vaadin): fix #8408 adding select for code editions to nom status row
Andreas Kohlbecker
07:35 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
... once the server is updated ;-) Andreas Kohlbecker
06:38 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
please review Andreas Kohlbecker
06:35 PM bug #8462 (Resolved): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationW...
Applied in changeset commit:cdm-vaadin|c80e35c14a41f15fc00f6bfa0cd5c46eadf5b37a. Andreas Kohlbecker
06:35 PM Revision c80e35c1 (cdm-vaadin): fix #8462 fuffering new blocking registrations for later associat...
Andreas Kohlbecker
02:40 PM Revision fe036473 (taxeditor): Merge branch 'hotfix/5.9.3'
jenkins
02:29 PM Revision b52b3d9a (taxeditor): Disable taxon filter + enable text filter on taxon names
Patrick Plitzner
02:28 PM Revision eac96113 (taxeditor): Disable taxon filter + enable text filter on taxon names
Patrick Plitzner
02:22 PM Revision f82960da (taxeditor): fix #8526: fix problem swap synonym and taxon
Katja Luther
02:19 PM bug #8516: Specimen editor (list) can not find FieldUnits with data only in protected titleCache
correct the `*` at the beginning of the search term helps.
I suggest renaming this issue to "improve and harmonize...
Andreas Kohlbecker
02:13 PM bug #8526 (Resolved): Swap synonym with accepted taxon does not work
Applied in changeset commit:taxeditor|cd9c544a43ceb69db7609d422f5c68abc1ccc115. Katja Luther
02:08 PM bug #8526 (Resolved): Swap synonym with accepted taxon does not work
the swap synonym with accepted taxon handler/operation calls the service but saves the old taxon afterwards and the n... Katja Luther
02:13 PM Revision cd9c544a (taxeditor): fix #8526: fix problem swap synonym and taxon
Katja Luther
01:39 PM Revision 9a7757ab (taxeditor): Updated version in pom / project files to taxeditor version : 5.9....
jenkins
01:13 PM Revision edec16d2 (cdmlib): ref #8248 Create State when termType is STATE
Patrick Plitzner
12:49 PM Revision 530ab926 (taxeditor): Revert "Add checkboxes for associating the ABCD unit with the fiel...
This reverts commit 7e19a94091e29289d12df03cf2ad3bcb78b29b81. Patrick Plitzner
11:01 AM bug #8520 (Rejected): Adding new user Group fails
Ticket rejected. Andreas Kohlbecker
10:57 AM bug #8521: User details view: Change password button accessible for ROLE_USER_MANAGER
according to what I wrote in https://dev.e-taxonomy.eu/redmine/projects/edit/wiki/CdmAuthorisationAndAccessControl th... Andreas Kohlbecker
09:44 AM Revision fc593598 (cdmlib): Add flag for associating the ABCD unit with the field unit
Patrick Plitzner
09:44 AM Revision 56dbf016 (cdmlib): ref #8248 Fix lazy loading problems for OWL import
Patrick Plitzner
09:44 AM Revision caa2350d (cdmlib): Revert "Add flag for associating the ABCD unit with the field unit"
This reverts commit 55b1bb529f2938de88202fd3b51447cab3cc5b58. Patrick Plitzner
09:44 AM Revision bcd7cc5a (taxeditor): Fix compile errors
Patrick Plitzner
09:40 AM Revision a7c1650e (cdmlib): ref #1444, ref #8509 improve ZoologicalNameCacheStrategy for infraspe...
Andreas Müller
09:29 AM Revision 7e19a940 (taxeditor): Add checkboxes for associating the ABCD unit with the field unit->...
Patrick Plitzner
08:46 AM Revision c084a011 (taxeditor): adapt TaxEditor to new name type
Andreas Müller
08:12 AM Revision 275bfcd0 (cdmlib): add Vlaans to Language uuids
Andreas Müller
08:12 AM Revision 0f44e94a (cdmlib): ref #1444, ref #8509 improve ZoologicalNameCacheStrategy for infraspe...
Andreas Müller

09/05/2019

11:43 PM Revision 27f61726 (cdmlib): cleanup
Andreas Müller
11:32 PM Revision b8911db5 (cdmlib): ref #1444, ref #8509 fix lastAction handling for ERMS
Andreas Müller
11:32 PM Revision 31b1547a (cdmlib): cleanup and remove ITaxonNameBase.getNomenclaturalCode
Andreas Müller
11:32 PM Revision b47d72dc (cdmlib): rename TaxonNameDefaultCacheStrategyTest
Andreas Müller
10:20 PM bug #8521: User details view: Change password button accessible for ROLE_USER_MANAGER
I think not only the change password button but generally all User related issues need to be accessible. Can you plea... Andreas Müller
05:08 PM bug #8521 (New): User details view: Change password button accessible for ROLE_USER_MANAGER
The "Change password button" mus also accessible for the Role `ROLE_USER_MANAGER` not only for `Admin` Andreas Kohlbecker
10:16 PM bug #8520 (Feedback): Adding new user Group fails
Isn't it self-explaining: "must match "[A-Za-z0-9_\.\-]+"?
As discussed we have a rule since 5.9 that usernames an...
Andreas Müller
03:47 PM bug #8520 (Rejected): Adding new user Group fails
I attempted to created the Group "User Manager", this failed with the following exception:
~~~
login : admin
...
Andreas Kohlbecker
10:02 PM bug #8516: Specimen editor (list) can not find FieldUnits with data only in protected titleCache
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Have you tried with Asterisk search. The specimen bulk editor...
Andreas Müller
09:52 PM Revision 3a180cbe (cdmlib-apps): ref #8508 improve ERMS validation
Andreas Müller
09:51 PM Revision 7e83bb1d (cdmlib-apps): ref #1444 force titleCache update for ERMS import
Andreas Müller
09:51 PM Revision f6c86214 (cdmlib-apps): ref #8508 improve import-export pipeline for ERMS
Andreas Müller
09:49 PM Revision de8788bd (cdmlib-apps): cleanup
Andreas Müller
09:49 PM Revision dc55d92e (cdmlib-apps): ref #1444, ref #8509 Updates for ERMS reference handling
Andreas Müller
09:47 PM Revision 2eaad1b1 (cdmlib-apps): ref #1444, ref #8509 LastAction(Date) handling for ERMS
Andreas Müller
06:59 PM Revision 3f545c52 (cdmlib-apps): minor
Andreas Müller
06:57 PM Revision f13666da (cdmlib-apps): ref #8104 adapt CubaExcelImport to lastNamePart
Andreas Müller
06:56 PM Revision c195f4fb (cdmlib-apps): fix #8513 adapt some Activators to missing CdmUtils method
Andreas Müller
06:15 PM bug #8522 (New): Make type status mandatory in Name type designation editor
Make "type status" mandatory in "Name type designation editor"
Record can be saved without entering a name status.
Wolf-Henning Kusber
05:48 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
The solution to this problems is tightly related to #7843.
Since I am assuming that we will decide for strategy 3....
Andreas Kohlbecker
05:23 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
this seems to happen, when the first name editor has been opened for a new name to be registered and has not jet been... Andreas Kohlbecker
05:45 PM task #7843: blocking registrations can get lost when first TaxonNamePopupEditor with new name is ...
I consider strategy 3 from above the most user friendly and robust solution Andreas Kohlbecker
05:19 PM Revision 62de7ebf (taxeditor): Merge branch 'hotfix/5.9.2'
jenkins
04:03 PM bug #8519 (Closed): ROLE_USER_MANAGER missing in FirstDataInserter
done Andreas Kohlbecker
04:01 PM bug #8519 (Resolved): ROLE_USER_MANAGER missing in FirstDataInserter
Applied in changeset commit:cdmlib|06e3b3f860d1e1813e97118ead71807ca7ee6414. Andreas Kohlbecker
03:42 PM bug #8519 (Closed): ROLE_USER_MANAGER missing in FirstDataInserter
The role `ROLE_USER_MANAGER` is missing in data bases and can not be created via the Taxeditor, see Andreas Kohlbecker
04:01 PM Revision 06e3b3f8 (cdmlib): fix #8519 adding ROLE_USER_MANAGER to FirstDataInserter
Andreas Kohlbecker
03:34 PM bug #7991: GrantedAuthority selection dialog extremly slow
this is a massive problem for me. This dialog is completely unusable. Andreas Kohlbecker
03:26 PM bug #8377: TypeDesignationsEditors: Delete must not be allowe before the workingset is saved
please review Andreas Kohlbecker
03:25 PM bug #8377 (Resolved): TypeDesignationsEditors: Delete must not be allowe before the workingset is...
Applied in changeset commit:cdm-vaadin|66af3161e72892bc06cb3ca9d9eb6e292f87c2fa. Andreas Kohlbecker
03:25 PM Revision 66af3161 (cdm-vaadin): fix #8377 disabling delete buttons in editors for new type design...
Andreas Kohlbecker
03:14 PM Revision 8a925e42 (taxeditor): ref #8389: adapt term preference handling
Katja Luther
03:13 PM Revision 1ced89e3 (taxeditor): ref #8389: fix problems with search preferences
Katja Luther
03:11 PM Revision 05bfe276 (taxeditor): ref #8389: fix problems with search preferences
Katja Luther
01:35 PM Revision 35910f47 (taxeditor): ref #8389: common name language combo needs termtype
Katja Luther
01:33 PM Revision 03fa610a (taxeditor): ref #8389: common name language combo needs termtype
Katja Luther
01:03 PM Revision d4527e75 (taxeditor): ref #8389: adapt term preference handling for nametypedesignation
Katja Luther
01:00 PM Revision acd9267c (taxeditor): ref #8389: adapt term preference handling for nametypedesignation
Katja Luther
12:53 PM Revision 62ae7823 (taxeditor): ref #8389: adapt term preference handling
Katja Luther
12:29 PM Revision ad368340 (taxeditor): ref #8389: fix preferred TaxonFeature Tree creation
Katja Luther
12:28 PM Revision 901d433e (taxeditor): ref #8389: fix preferred TaxonFeature Tree creation
Katja Luther
12:01 PM task #8518 (New): [PESI][DW] PESI export rules documented
Source:
Taxon:
* Displayname: seems not to be used in PESI portal; creation unclear, in ERMS SQL export only t...
Andreas Müller
10:58 AM Revision 0be6d8aa (taxeditor): ref #8389: minor
Katja Luther
10:57 AM Revision 45d7ee4e (taxeditor): ref #8389: minor
Katja Luther
10:08 AM Revision d947e6ad (taxeditor): ref #8389: fix NPE and smaller issues in preferences
Katja Luther
10:07 AM Revision e3fb78b6 (taxeditor): ref #8389: fix NPE and smaller issues in preferences
Katja Luther

09/04/2019

07:00 PM bug #8377 (In Progress): TypeDesignationsEditors: Delete must not be allowe before the workingset...
Andreas Kohlbecker
06:58 PM bug #8376: RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting o...
please review Andreas Kohlbecker
06:57 PM bug #8376 (Resolved): RegistrationWorkingsetEditor: prevent clicking any futher buttons after the...
Applied in changeset commit:cdm-vaadin|4e9b68d2176a076bf7bd07ee6680f752f2223e2d. Andreas Kohlbecker
06:57 PM Revision 4e9b68d2 (cdm-vaadin): fix #8376 disabling add new button after first click
Andreas Kohlbecker
06:18 PM Revision 11c97eb8 (taxeditor): logging feedback on connecting local dev cdm instance
Andreas Kohlbecker
05:56 PM Revision ca8b3fe8 (taxeditor): ref #8505 inverting incorrect null check
Andreas Kohlbecker
04:27 PM bug #8516: Specimen editor (list) can not find FieldUnits with data only in protected titleCache
Andreas Müller wrote:
> Have you tried with Asterisk search. The specimen bulk editor like all bulk editor do only a...
Andreas Kohlbecker
03:21 PM bug #8516 (Feedback): Specimen editor (list) can not find FieldUnits with data only in protected ...
Have you tried with Asterisk search. The specimen bulk editor like all bulk editor do only an exact search. The speci... Andreas Müller
04:01 PM feature request #8342: shift field Field number
please review Andreas Kohlbecker
04:01 PM feature request #8342 (Resolved): shift field Field number
Applied in changeset commit:cdm-vaadin|764269a10375767ce378c5e51a81639543a53eae. Andreas Kohlbecker
04:01 PM Revision 764269a1 (cdm-vaadin): fix #8342 solving layout problems of the AbstractTimePeriodField
Andreas Kohlbecker
03:50 PM Revision 079dd1a6 (taxeditor): ref #8489: disable combo for local taxonnode sort preference if no...
Katja Luther
03:49 PM Revision 41b6cbb7 (taxeditor): ref #8489: disable combo for local taxonnode sort preference if no...
Katja Luther
03:33 PM Revision 43b350e8 (taxeditor): ref #8489: taxon node order preferences
Katja Luther
03:32 PM Revision 14f76d1e (taxeditor): ref #8489: taxon node order preferences
Katja Luther
03:19 PM Revision d54dbb90 (taxeditor): ref #8489: fix preference and term issues - continue
Katja Luther
03:19 PM Revision 95ef4486 (taxeditor): fix preferences and term issues
Katja Luther
03:17 PM Revision d5a2a496 (taxeditor): ref #8489: fix preference and term issues - continue
Katja Luther
03:08 PM Revision cee6ae63 (taxeditor): Updated version in pom / project files to taxeditor version : 5.9....
jenkins
02:38 PM Revision 876d7bb3 (cdmlib): ref #8505 adapting ApplicationConfiguration
Andreas Kohlbecker
11:57 AM bug #8517 (Resolved): SpecimenOrObservation: data from protected titleCache missig in portal pages
please review Andreas Kohlbecker
11:55 AM bug #8517: SpecimenOrObservation: data from protected titleCache missig in portal pages
this is actually a problem in the `DerivedUnitFacadeCacheStrategy` which misses to respect protected `FieldUnit` titl... Andreas Kohlbecker
11:56 AM Revision c487ac2e (cdmlib): ref #8517 DerivedUnitFacadeCacheStrategy handling protected FieldUnit...
Andreas Kohlbecker
11:14 AM Revision eba7ec9d (taxeditor): ref #8505 adapting taxeditor to changes in ConfigFileUtil
Andreas Kohlbecker
10:33 AM Revision 2169c8d6 (cdmlib): ref #8505 removing test code
Andreas Kohlbecker
10:31 AM Revision 805b1fcf (cdmlib): ref #8505 making getCdmHomeSubDirFallback() static again
Andreas Kohlbecker
09:40 AM Revision 8a7e7d33 (taxeditor): fix preferences and term issues
Katja Luther
02:31 AM Revision 66061a00 (cdmlib): ref #1444, ref #8509 fix problems in TimePeriod mapping and toXXX method
Andreas Müller
02:31 AM Revision 7efb614a (cdmlib): ref #1444, ref #8509 add last action mapping
Andreas Müller
02:31 AM Revision 30643752 (cdmlib): ref #1444, ref #8509 add DOI mapper
Andreas Müller
02:31 AM Revision 6e9df385 (cdmlib): ref #1444, ref #8509 better handling of trim in mappers
Andreas Müller
02:31 AM Revision b1674bbf (cdmlib): cleanup
Andreas Müller
02:31 AM Revision 563333d2 (cdmlib): minor
Andreas Müller
02:30 AM Revision bb97054a (cdmlib-apps): minor
Andreas Müller

09/03/2019

06:51 PM bug #8517 (Resolved): SpecimenOrObservation: data from protected titleCache missig in portal pages
The following portal pages are missing to show data from protected SpecimenOrObservation.titleCaches:
* Registrati...
Andreas Kohlbecker
06:49 PM bug #8516 (Feedback): Specimen editor (list) can not find FieldUnits with data only in protected ...
while the *Specimen editor (list)* misses finding the below shown FielUnits the *Specimen editor (tree)* finds them ... Andreas Kohlbecker
06:06 PM bug #6523: Correct display of misspellings in synonymy
Andreas Kohlbecker wrote:
> Guten Morgen,
>
> ich bin hinsichtlich einer endgültigen Lösung leidenschaftslos und...
Andreas Kohlbecker
05:04 PM task #8512: Consider making Registration a subclass of IdentifiableEntity
As far as I understood will PhycoBank repeat the same registration that has been done in another registration.
Thi...
Andreas Kohlbecker
04:54 PM task #8512: Consider making Registration a subclass of IdentifiableEntity
We first need more information about the semantic of the additional registration. Should it be a pure clone like in G... Andreas Müller
12:59 PM task #8512 (New): Consider making Registration a subclass of IdentifiableEntity
For Phycobank it is needed to refer to external registration identifiers.
E.g.: A registration made in mycobank, z...
Andreas Kohlbecker
04:12 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Müller wrote:
> Andreas Müller wrote:
> > The test ConfigFileUtilTest.testGetFolderSeperator does not work ...
Andreas Kohlbecker
04:11 PM task #8513: CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator()
if there are no problems in the products a review by another person will not be needed and the ticket can be closed. Andreas Kohlbecker
04:09 PM task #8513 (Resolved): CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator()
Applied in changeset commit:cdmlib|c3fca4bd9b4120f48b605f36f5efc59dd8e4bba8. Andreas Kohlbecker
04:08 PM task #8513 (Closed): CdmUtils: remove MUST_EXIST_FILE and getResourceFolderSeperator()
follow up to #8189
The getResourceFolderSeperator() method is not needed at all. The separator character is only u...
Andreas Kohlbecker
04:09 PM Revision c3fca4bd (cdmlib): fix #8513 removing MUST-EXIST file and getResourceFolderSeperator() m...
Andreas Kohlbecker
03:29 PM Revision 768f6835 (cdmlib): ref #8505 renaming method to getResourceFolderSeperator() and adaptin...
Andreas Kohlbecker
03:12 PM task #8505 (Resolved): ConfigFileUtil: turn all spring bean methods into not statical methods.
Applied in changeset commit:cdmlib|68ea5e65a8f844fef8efbf698f53f4fbfa6367b3. Andreas Kohlbecker
03:11 PM task #8505 (In Progress): ConfigFileUtil: turn all spring bean methods into not statical methods.
Andreas Kohlbecker
03:12 PM Revision 68ea5e65 (cdmlib): fix #8505 turning statical methods of ConfigFileUtil into non statica...
Andreas Kohlbecker
10:00 AM bug #8511 (Closed): The structure path in the character details view should have a line break
As seen in the screen shot, a large structure path expands the width of the details view so that the user has to scro... Patrick Plitzner
09:51 AM bug #8510 (New): Non unique object exception when creating FeatureStates
I could reproduce this by creating about 4-5 FeatureStates for a character tree, then save, and then create another 3... Patrick Plitzner

09/02/2019

05:29 PM Revision ae1db989 (cdmlib-apps): new PESI Source and some cleanup
Andreas Müller
05:28 PM Revision a99910b1 (cdmlib-apps): ref #8509 link and notes for ERMS source export
Andreas Müller
04:59 PM Revision ca169a1e (cdmlib-apps): ref #8509 improve findKingdomIdFromTreeIndex
Andreas Müller
04:57 PM Revision 2741552d (cdmlib-apps): ref #8508 further improvements to ERMS pipeline validator
Andreas Müller
04:56 PM Revision 33f66be4 (cdmlib-apps): cleanup
Andreas Müller
04:55 PM Revision 3d4c80f2 (cdmlib-apps): ref #1444 add year to ErmsReferenceImport and not yet handled fo...
Andreas Müller
04:54 PM Revision 292c6d7f (cdmlib-apps): cleanup and remove pureNames from ERMSExport (not existing)
Andreas Müller
04:49 PM Revision 1893cc6d (cdmlib-apps): ref #1444 minor changes in ErmsImportActivator
Andreas Müller
04:46 PM Revision b59d1b6d (cdmlib): ref #1444 Add TimePeriodMapper for Referece.year import
Andreas Müller
04:46 PM Revision 42798909 (cdmlib): cleanup
Andreas Müller
01:12 PM Revision 83d22c83 (taxeditor): Merge branch 'hotfix/5.9.1'
jenkins
11:10 AM Revision 0b7666e2 (taxeditor): fix NPE in NomenclaturalStatusElement
Katja Luther
11:08 AM Revision 5e692cf1 (taxeditor): Updated version in pom / project files to taxeditor version : 5.9....
jenkins
10:27 AM Revision 63a07f6f (taxeditor): fix NPE in NomenclaturalStatusElement
Katja Luther
08:59 AM bug #8488 (In Progress): Characters can not be added to feature trees
It is now possible to add characters to a feature tree via the context menu. Patrick Plitzner
08:47 AM Revision f4abf969 (taxeditor): Fix log message
pplitzner
08:21 AM Revision e9a06541 (cdmlib): ref #8488 Recurse sub types of term types
pplitzner

09/01/2019

01:19 AM Revision 7034419f (cdmlib-apps): ref #8509 latest changes to PesiExportActivatorERMS
Andreas Müller
01:19 AM Revision 988f3c81 (cdmlib-apps): ref #8509 fix TaxonName id finding
Andreas Müller
01:18 AM Revision 3deab5ac (cdmlib-apps): cleanup
Andreas Müller
01:15 AM Revision 9ee93cb4 (cdmlib-apps): ref #8508 add some more columns to Reference validation
Andreas Müller
12:13 AM Revision adbd4a26 (cdmlib): fix compile error
Andreas Müller
11:30 PM Revision 6861320c (cdmlib-apps): ref #8509 update PesiExportActivatorERMS
Andreas Müller
11:22 PM Revision 308df7ca (cdmlib-apps): ref #8509 fix synonym handling in PesiTransformer
Andreas Müller
11:21 PM Revision 0f099b94 (cdmlib-apps): ref #8509 handle ClassCastException for Kingdom taxa
Andreas Müller
11:20 PM Revision 06039e15 (cdmlib-apps): ref #8509 update PesiExportActivatorERMS
Andreas Müller
11:14 PM Revision 3221710a (cdmlib-apps): cleanup
Andreas Müller
11:08 PM Revision 68fa46a4 (cdmlib-apps): ref #8508 add single reference diff to ERMS pipeline validation
Andreas Müller
11:06 PM Revision 2fda02f8 (cdmlib): Exception handling in DbSingleAttributeExportMapperBase
Andreas Müller
11:03 PM Revision 739fa8d6 (cdmlib): minor
Andreas Müller
06:59 PM Revision 96dc2943 (cdmlib-apps): ref #8508 add first ERMS pipeline tests
Andreas Müller
06:23 PM Revision cb547089 (cdmlib-apps): ref #8508 add first ERMS pipeline tests
Andreas Müller
06:21 PM Revision 2c7f7f9b (cdmlib-apps): ref #8509 changes to ERMS export activator
Andreas Müller
06:15 PM task #8509 (In Progress): [PESI][ERMS] Export ERMS data to PESI
Andreas Müller
06:10 PM Revision 72fbf719 (cdmlib-apps): ref #1444 latest changes on ERMS import
Andreas Müller
05:58 PM Revision 52825a0c (cdmlib-apps): cleanup
Andreas Müller
05:52 PM Revision 071a4ba6 (cdmlib): ref #8508 add uniqueResult methods to Source
Andreas Müller
05:52 PM bug #8508 (In Progress): [PESI][ERMS] ERMS import pipeline validation
Add validation for the correctnes of the ERMS->CDM->PESI pipeline Andreas Müller
05:49 PM Revision 990febd3 (cdmlib): ref #1444 add some ISO 639-3 languages for ERMS import
Andreas Müller
05:48 PM Revision cfe5663e (cdmlib): error handling in Language csv reading
Andreas Müller
05:47 PM Revision b2c0f0f3 (cdmlib): cleanup and add new TermVocabulary.NewInstance method
Andreas Müller

08/31/2019

03:00 PM Revision c6c1ede7 (cdmlib-apps): ref #1444 handle truncated source.name (reference.titleCache)
Andreas Müller
02:59 PM Revision cdf5b39d (cdmlib-apps): cleanup
Andreas Müller
02:56 PM Revision 649ffe58 (cdmlib-apps): ref #1444 rename ERMS transformer uuids
Andreas Müller
02:51 PM Revision c4879dac (cdmlib-apps): some changes to activators
Andreas Müller
02:50 PM Revision 8804a550 (cdmlib-apps): ref #1444 update pesi/erms sources and destinations
Andreas Müller
02:47 PM Revision 2002808b (cdmlib): ref #1444 handle truncated source.name (reference.titleCache)
Andreas Müller
02:27 PM Revision 21cbca85 (cdmlib): cleanup
Andreas Müller

08/30/2019

09:40 PM bug #8189: Allow configuration of 'user.home' via the spring environment
Andreas Müller wrote:
> The test ConfigFileUtilTest.testGetFolderSeperator does not work anymore on windows systems ...
Andreas Müller
04:50 PM bug #8189 (Closed): Allow configuration of 'user.home' via the spring environment
all remaining tasks copied to #8505
and closing this ticket
Andreas Kohlbecker
08:59 PM feature request #8507 (New): Handle common names with same name and language but different area b...
As an example see: https://www.europlusmed.org/cdm_dataportal/taxon/eaa22491-9bf2-44f6-ba13-3eb3af6134a9
We could...
Andreas Müller
08:04 PM task #8391: Name page shows complete name information (II)
If you create subtasks you should put all tasks to subtasks. Otherwise ticket handling doesn't work well.
Preferred ...
Andreas Müller
05:17 PM task #8506 (New): Remove the UpdatableRoutingDataSource, related classes and configuration
The UpdatableRoutingDataSource has not been used for years and will never be reactivated since this concept would cau... Andreas Kohlbecker
04:54 PM Revision 949c21de (cdmlib-apps): try to fix some compile errors with FeaturNode.NewInstance
Andreas Müller
04:45 PM task #8505 (Closed): ConfigFileUtil: turn all spring bean methods into not statical methods.
follow up to #8189
in ConfigFileUtil
**1.** turn all spring bean methods into not statically methods.
**2.*...
Andreas Kohlbecker
04:41 PM Revision 2e8d7de8 (cdmlib-apps): adapt erms destination and some minor cleanup
Andreas Müller
04:40 PM Revision 9c9b6f73 (cdmlib-apps): cleanup
Andreas Müller
04:35 PM Revision 4095de9d (cdmlib): remove deprecated listRankSpecificRootNodes
Andreas Müller
04:30 PM task #8504 (Closed): Name page: allow hiding the Taxon section via settings
works as expected Andreas Kohlbecker
03:22 PM task #8504 (Resolved): Name page: allow hiding the Taxon section via settings
Applied in changeset commit:cdm-dataportal|c05ac190012f0f56d4d2b8d47d6e227eabe353ed. Andreas Kohlbecker
03:05 PM task #8504 (Closed): Name page: allow hiding the Taxon section via settings
Andreas Kohlbecker
03:22 PM Revision c05ac190 (cdm-dataportal): fix #8504 setting to hide the taxa section in the name page
Andreas Kohlbecker
02:37 PM feature request #8344 (Feedback): cdm light export: add dummy line in simpla facts table
I have no time to review this. But I remember a discussion with WGB where he complaint that the line endings are linu... Andreas Müller
01:08 PM feature request #8178 (Rejected): Auto-create absence/presence character for every structure
Rejecting ticket -> It does not always make sense to auto-create the "presence" character e.g. "Tepal Tip" is a struc... Patrick Plitzner
08:56 AM feature request #8299: add typification column to scientific name and homotypical group in cdm light
move to 5.10 for feedback of WB Katja Luther

08/29/2019

10:17 PM bug #8385: Open issues in DB preferences
can you move open issues to #8489? Andreas Müller
04:25 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> In local preferences Publish Flag for "Use Default" the Camel Case is used, not the current ...
Katja Luther
03:30 PM bug #8385: Open issues in DB preferences
In local preferences Publish Flag for "Use Default" the Camel Case is used, not the current correct label. E.g. (NotP... Andreas Müller
02:37 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Distribution editor: Restore default removes the entry "distribution.status.term" from the a...
Katja Luther
02:37 PM bug #8385: Open issues in DB preferences
Katja Luther wrote:
> Andreas Müller wrote:
> > Distribution editor status and area selection: restore default dele...
Andreas Müller
02:32 PM bug #8385: Open issues in DB preferences
Distribution editor: Restore default removes the entry "distribution.status.term" from the above table (and completel... Andreas Müller
02:30 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Distribution editor status and area selection: restore default deletes the values correctly ...
Katja Luther
02:28 PM bug #8385: Open issues in DB preferences
Distribution editor status and area selection: restore default deletes the values correctly but when opening the sele... Andreas Müller
02:21 PM bug #8385: Open issues in DB preferences
Names.NomenclaturalStatus restores default only after clicking 2x "Restore Default". Or more exact, clicking the firs... Andreas Müller
01:58 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Andreas Müller wrote:
> > Generally values recovered by "Restore default" often seem not to...
Katja Luther
01:22 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Generally values recovered by "Restore default" often seem not to be persisted but old value...
Andreas Müller
01:16 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Andreas Müller wrote:
> > Saving of "Publish Flag" does not always work. You may try differ...
Katja Luther
01:15 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Andreas Müller wrote:
> > General: When choosing "No - allow override" for all 3 entries th...
Katja Luther
01:12 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Saving of "Publish Flag" does not always work. You may try different states including allow ...
Andreas Müller
12:53 PM bug #8385: Open issues in DB preferences
Katja Luther wrote:
> Andreas Müller wrote:
> > Is there a reason why allow override is always disabled for "Enable...
Katja Luther
12:48 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> General: When choosing "No - allow override" for all 3 entries the values shown in local pre...
Andreas Müller
12:45 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Is there a reason why allow override is always disabled for "Enable Distribution Editor"?
...
Katja Luther
12:34 PM bug #8385 (Feedback): Open issues in DB preferences
Is there a reason why allow override is always disabled for "Enable Distribution Editor"? Andreas Müller
11:58 AM bug #8385 (Resolved): Open issues in DB preferences
abcd preferences are moved to a new ticket, please review the rest. Katja Luther
06:58 PM Revision 064339ce (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
06:57 PM Revision abc1d0c7 (cdm-server): updating poms for branch'release/5.9.0' with non-snapshot versions
jenkins
06:49 PM Revision 227b1bf9 (cdm-webapp): Merge branch 'release/5.9.0' into develop
jenkins
06:48 PM Revision 4afdb1a4 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
06:48 PM Revision 284c75d7 (cdm-webapp): updating poms for branch'release/5.9.0' with non-snapshot versions
jenkins
06:48 PM Revision 59697fa9 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.9.0
jenkins
06:40 PM Revision 6c55794d (cdm-vaadin): Merge branch 'release/5.9.0' into develop
jenkins
06:40 PM Revision f96f11e8 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
06:37 PM Revision 56fdc29e (cdm-vaadin): updating poms for branch'release/5.9.0' with non-snapshot versions
jenkins
06:37 PM Revision 48bf314c (cdm-vaadin): jenkins bumping cdmlib.version to 5.9.0
jenkins
06:36 PM Revision ba26d477 (taxeditor): Merge branch 'release/5.9.0' into develop
jenkins
06:36 PM Revision f002ce64 (taxeditor): Merge branch 'release/5.9.0'
jenkins
06:35 PM Revision 18a58edc (cdm-dataportal): Merge branch 'release/5.9.0' into develop
jenkins
06:35 PM Revision 1472f5e7 (cdm-dataportal): updating poms for branch'release/5.9.0' with non-snapshot ver...
jenkins
06:35 PM Revision 697769be (cdm-dataportal): release-preparation: production level css
jenkins
06:35 PM Revision 81b02ea5 (cdmlib): Updating develop poms back to pre merge state
jenkins
06:35 PM Revision 42c74407 (cdmlib): Merge branch 'master' into develop
jenkins
06:34 PM Revision 8ef7ee37 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
06:34 PM Revision 12d3d93e (cdmlib): Merge branch 'release/5.9.0'
jenkins
06:17 PM Revision 3c1d7890 (cdmlib): updating poms for branch'release/5.9.0' with non-snapshot versions
jenkins
04:19 PM Revision 0a635f6d (taxeditor): ref #8385: label issues
Katja Luther
04:16 PM Revision bff2fb0f (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.9.0-SN...
jenkins
04:16 PM Revision 4150c139 (cdm-webapp): updating poms for 5.10.0-SNAPSHOT development
jenkins
04:16 PM Revision 35a26a79 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.10.0-S...
jenkins
04:15 PM Revision ada5bbbd (cdm-server): updating poms for 5.10.0-SNAPSHOT development
jenkins
04:15 PM Revision bd4d96d0 (cdm-dataportal): updating poms for 5.10.0-SNAPSHOT development
jenkins
04:15 PM Revision 76b888e0 (taxeditor): Updated version in pom / project files to taxeditor version : 5.10...
jenkins
04:14 PM Revision a1db19cb (taxeditor): Updated version in pom / project files to taxeditor version : 5.9....
jenkins
04:14 PM Revision 07aaf958 (cdm-vaadin): jenkins bumping cdmlib.version to 5.9.0-SNAPSHOT
jenkins
04:13 PM Revision cdf24655 (cdm-vaadin): updating poms for 5.10.0-SNAPSHOT development
jenkins
04:13 PM Revision 1526db86 (cdm-vaadin): updating poms for 5.9.0 branch with snapshot versions
jenkins
04:13 PM Revision c191327f (cdm-vaadin): jenkins bumping cdmlib.version to 5.10.0-SNAPSHOT
jenkins
04:11 PM Revision d29d8048 (cdmlib): updating poms for 5.10.0-SNAPSHOT development
jenkins
04:06 PM Revision 22a5aeff (cdmlib): ref #8248 Minor fixes for session saving
Patrick Plitzner
03:40 PM feature request #8503: Create abstract base UI from RegistrationUI and use it for all UIs
> Especially it needs to be available for the distribution editor
agreed! This means it need to be done for the Di...
Andreas Kohlbecker
03:10 PM feature request #8503: Create abstract base UI from RegistrationUI and use it for all UIs
Especially it needs to be available for the distribution editor Andreas Müller
03:08 PM feature request #8503 (New): Create abstract base UI from RegistrationUI and use it for all UIs
The code which configures the error hanlder should also go into the abstract base class:
~~~java
Delegati...
Andreas Kohlbecker
03:32 PM feature request #8304: Name page redirects to according taxon depending on query parameter
the result of our call was the following:
The global switch which overrides the redirect behavior is not causing p...
Andreas Kohlbecker
03:05 PM Revision 27bf6632 (cdmlib): ref #8441 remove cascading from FeatureState.feature and .state
Andreas Müller
02:49 PM bug #8462: NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPr...
the same issue was reported once again:
Test New name entered (not saved) new Basionym, new reference or selected ...
Andreas Kohlbecker
02:36 PM Revision 75ca45ac (taxeditor): ref #8385: do not show default preference for distributionstatus
Katja Luther
02:36 PM bug #8502: taxa with doubtful flag lack proper formatting
Eckhard please can you test in http://test.e-taxonomy.eu/dataportal/preview/euromed/ if this issue is solved now? Andreas Kohlbecker
02:35 PM bug #8502 (Resolved): taxa with doubtful flag lack proper formatting
Applied in changeset commit:cdm-dataportal|61fc6c9311b1053b08ebb32085842f231edb3746. Andreas Kohlbecker
02:15 PM bug #8502 (Resolved): taxa with doubtful flag lack proper formatting
taxa with doubtful flag lack proper formatting. The dataportal uses the titleCache instead of the taggedTitle. Andreas Kohlbecker
02:35 PM Revision 61fc6c93 (cdm-dataportal): fix #8502 proper handling of tagged text for douptful taxa
Andreas Kohlbecker
02:28 PM Revision d84ac885 (taxeditor): ref #8489: fix set default for db term preferences
Katja Luther
02:12 PM Revision 1d3ab649 (taxeditor): ref #8489: local term list are set to db preference value if defau...
Katja Luther
02:06 PM Revision cb75abfb (taxeditor): ref #8385: show db preference for local term preferences if defaul...
Katja Luther
01:39 PM Revision 6f5b48f3 (taxeditor): ref #8385: setToDefault needs to setApply = true
Katja Luther
01:15 PM Revision 53d771bb (taxeditor): ref #8385: fix enabling and disabling of distribution editor pref ...
Katja Luther
01:10 PM Revision 643f70e0 (taxeditor): ref #8385: adapt local default labels to db preference
Katja Luther
12:52 PM Revision 44c33856 (taxeditor): ref #8385: fix enabling of allow override button
Katja Luther
12:50 PM Revision c4ae573c (taxeditor): ref #8385: fix NPE
Katja Luther
12:10 PM task #8501 (New): setup OWASP vulnerability checker for projects

The (jenkins plugin](https://wiki.jenkins.io/display/JENKINS/OWASP+Dependency-Check+Plugin) seems not to be worki...
Andreas Kohlbecker
11:38 AM bug #8500: DistributionStatusUI: Error while detaching UI from session
back to unassigned .... Andreas Kohlbecker
10:54 AM bug #8500 (New): DistributionStatusUI: Error while detaching UI from session

~~~
[flora-cuba] 2019-08-29 10:12:43,276 WARN [org.eclipse.jetty.server.session.HashSessionManager@5330da99Timer...
Andreas Kohlbecker
10:58 AM Revision bad6ba63 (cdmlib): avoid NPE in abcd import
Katja Luther
10:52 AM Revision 10aabbdd (cdmlib): smaller issues in Abcd import
Katja Luther
09:26 AM Revision 10a23387 (cdmlib-apps): ref #8499 committed additional parameter import for E+M
Andreas Müller
09:20 AM task #8499 (New): Decide how to handle additional parameters like refAuthorString and originalNom...
They have been additionally imported to CDM from BM, as the information may be needed in future.
For Person it has...
Andreas Müller
09:14 AM Revision f49ceeee (cdmlib-apps): cleanup
Andreas Müller
09:11 AM Revision c202fe96 (cdmlib): ref #8248 Check existing feature/state of FeatureState during import
Patrick Plitzner
09:10 AM Revision 576de855 (cdmlib): ref #8248 Adapt to new term node service
Patrick Plitzner
09:09 AM Revision f0109d06 (cdmlib-apps): ref #8479 split taxon and description import, remove auditing an...
Andreas Müller
05:14 AM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
We could still add symbols with the current state of the flag to the "Set Flags" submenu. I created a new ticket for ... Andreas Müller
05:12 AM bug #8498 (In Progress): Set Flags should show the current status of the flags
Currently when setting the flag one does not know if the flag is set before or not. Especially for doubtful this is t... Andreas Müller

08/28/2019

04:51 PM feature request #8180 (Closed): Add property term "Presence/Absence" to CDM default terms
Terms and vocabulary are available in the taxeditor and replace possible existing presence/absence terms. Patrick Plitzner
04:50 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
Patrick Plitzner
01:27 PM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
For future a real freetext search might be preferable for the states in case there are >>10 states, but for now it is... Andreas Müller
10:00 AM feature request #8475 (Resolved): Adapt applicable state detail view elements to FeatureState
Removed empty element after first selection.
All issues should be fixed now.
Patrick Plitzner
04:46 PM Revision 076d19ba (cdmlib): ref #8248 Fix import of character structure and property
Patrick Plitzner
03:45 PM bug #8389 (Resolved): Correct handling of default values with allowOverride=false
now the allow override selection is now handled seperatly and the preference is only removed when default + allow ove... Katja Luther
10:28 AM bug #8389: Correct handling of default values with allowOverride=false
But this is what this ticket is all about.
I can't remember that we decided to delete if "default" was selected AND ...
Andreas Müller
10:12 AM bug #8389: Correct handling of default values with allowOverride=false
Andreas Müller wrote:
> Katja Luther wrote:
> > The actual implementation is that if the default value is chosen al...
Katja Luther
10:03 AM bug #8389 (Feedback): Correct handling of default values with allowOverride=false
Katja Luther wrote:
> The actual implementation is that if the default value is chosen allowOverride is set to true ...
Andreas Müller
09:58 AM bug #8389 (Resolved): Correct handling of default values with allowOverride=false
Katja Luther
09:37 AM bug #8389: Correct handling of default values with allowOverride=false
The actual implementation is that if the default value is chosen allowOverride is set to true and the checkbox is dis... Katja Luther
03:41 PM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
the labels are moved Katja Luther
03:40 PM Revision 89683c7f (taxeditor): ref #8385: smaller label issues
Katja Luther
03:40 PM Revision 76ab205e (taxeditor): ref #8282: adapt order in navigator menu
Katja Luther
03:25 PM Revision 8849a7eb (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into...
Katja Luther
03:24 PM Revision c87189a7 (cdmlib): SpecimenTypeDesignation representations for names
Katja Luther
03:09 PM bug #8496 (New): Improve public setters for entity collections
I had a problem when writing the CDM2CDM import. Here I wanted to call the setter and replace the old collection (whi... Andreas Müller
02:35 PM bug #8496 (Feedback): Improve public setters for entity collections
Does this implementation cause any real problems or is it only semantically problem?
As far as I remember the culp...
Andreas Kohlbecker
02:20 PM bug #8496 (New): Improve public setters for entity collections
These were implemented in #7600.
Unfortunately the current semantics is that e.g. AnnotatableEntity.setAnnotations...
Andreas Müller
02:54 PM Revision edf56664 (taxeditor): ref #8475 Remove empty element when single parent is selected
Patrick Plitzner
02:53 PM Revision ecc03050 (cdmlib): ref #8248 Import applicability feature states
Patrick Plitzner
02:23 PM feature request #8495 (Closed): classification tree horizontally scrolls to active entrty
done! Andreas Kohlbecker
02:16 PM feature request #8495 (Closed): classification tree horizontally scrolls to active entrty
Wenn man sich durch die Classification klickt, verschwindet ab einer gewissen Ebene das, was man eigentlich sehen wil... Andreas Kohlbecker
02:22 PM Revision dab60a9f (cdm-dataportal): ref #8495 classification tree scrolls horizontally to the act...
Andreas Kohlbecker
02:21 PM feature request #7600: public setters for entity collections
There is an open issue with the current implementation. I created a new ticket: #8496 Andreas Müller
02:13 PM task #8479 (In Progress): [PESI][FE] Cdm-2-Cdm import for FauEu
Andreas Müller
02:05 PM bug #8494 (In Progress): Better ABCD Preferences Page
to be done
see also #8489
also #8385#note-51,
#8385#note-52
~~Why does the nomenclatural code not provid...
Katja Luther
02:04 PM bug #8493: hide taxon page general tab TOC block if empty
adding work in progress as patch file: attachment:issue-8493.patch Andreas Kohlbecker
02:00 PM bug #8493 (In Progress): hide taxon page general tab TOC block if empty
I tried solving this issue and found that the table of contents is not empty. For Euro+Med the synonymy has been hidd... Andreas Kohlbecker
01:16 PM bug #8493 (In Progress): hide taxon page general tab TOC block if empty
reported by Anton:
Hallo,

da ist so ein verrutschtes “Content” (s.u.).
https://www.europlusmed.org/?q=cdm_d...
Andreas Kohlbecker
01:49 PM Revision de9fe10f (taxeditor): ref #8385: smaller label issues
Katja Luther
12:57 PM Revision 95a16223 (cdmlib): ref #6774 export feature states
Patrick Plitzner
12:36 PM Revision 79bd864f (taxeditor): ref #8389: revert disabling of allowOverride for default selection
Katja Luther
12:14 PM Revision 065f7e99 (cdmlib): ref #6794 Fix endless loop in OWL export
Patrick Plitzner
11:58 AM bug #8492: Adapt CsvNameExport to rollback only and generally review where and how it should be used
These 2 tests failed:
~~~
Tests in error:
IOServiceExportTest.exportCSVNameTest:99 ? UnexpectedRollback Trans...
Andreas Müller
11:57 AM bug #8492 (New): Adapt CsvNameExport to rollback only and generally review where and how it shoul...
To make the 2 CsvNameExport tests in TaxEditor test environment not fail, read only was set to false in CsvNameExport... Andreas Müller
11:33 AM Revision 9622040d (cdmlib): ref #6794 Add progress monitor break point
Patrick Plitzner
11:32 AM Revision fe330183 (cdmlib): ref #6794 Fix potential ClassCastException
Patrick Plitzner
11:16 AM feature request #8491 (New): show higher taxon graph in name and taxon pages optionally
Step 1: discuss the concept of showing the higher graph paths Andreas Kohlbecker
10:50 AM Revision 5087fadc (cdm-dataportal): renaming search page tab to 'Taxon graph search'
Andreas Kohlbecker
09:59 AM Revision e8617cf0 (taxeditor): ref #8475 Remove empty element after first feature selection
Patrick Plitzner
09:58 AM Revision e1dfd329 (taxeditor): ref #8389: disable allowOverride when 'use default' is selected
Katja Luther
09:52 AM Revision 5801fcdb (taxeditor): ref #8475 Update Finish button after state selection
Patrick Plitzner
09:40 AM feature request #8490 (New): Sitemap implemented
This feature has been requested since the early days of the dataportal.
A "sitemap" for the following data types i...
Andreas Kohlbecker
09:17 AM Revision cdbc4cb1 (cdmlib): adapt cdm light column names
Katja Luther
02:06 AM Revision 5e8ef6ba (cdmlib): fix NPE in setNomenclaturalSource
Andreas Müller
02:05 AM Revision dc6b9347 (cdmlib): revert JAXB issues on NamedArea
Andreas Müller
02:05 AM Revision 1d213d90 (cdmlib): cleanup
Andreas Müller

08/27/2019

01:43 AM Revision b617691e (cdmlib): remove redundant JAXB parameters from NamedArea
Andreas Müller
01:42 AM Revision 8da0b07f (cdmlib): ref #8479 add listUUIDs method
Andreas Müller
01:41 AM Revision 91c82b50 (cdmlib): cleanup
Andreas Müller
10:12 PM Revision e03ae1b2 (cdmlib-apps): ref #8479 rename taxon node import class
Andreas Müller
10:10 PM Revision e94f29fe (cdmlib-apps): ref #8479 add concurrency to configurator
Andreas Müller
10:08 PM Revision c0238c65 (cdmlib-apps): ref #8479 move cdm2cdm methods down to base class
Andreas Müller
04:49 PM Revision b440115a (cdmlib-apps): ref #8479 concurrency in FauEu2CdmImport and some other improvem...
Andreas Müller
04:36 PM Revision f1783317 (cdmlib): improved logging for TaxonNode with missing sortIndex
Andreas Müller
04:36 PM Revision d8ab86ef (cdmlib): ref #8479 propertyPaths fix for TermVocabulary
Andreas Müller
04:36 PM Revision 61f5e0eb (cdmlib): ref #8479 add concurrency, TaxonNodeOutStreamPartitionerConcurrent
Andreas Müller
04:36 PM Revision fccd79b3 (cdmlib): ref #8479 ordering for taxon nodes implemented in TaxonNodeFilter and...
Andreas Müller
04:36 PM Revision 73556d6c (cdmlib): ref #8479 propertyPaths for TaxonNodeOutStreamPartitioner and introdu...
Andreas Müller
04:36 PM Revision 676533cc (cdmlib): minor
Andreas Müller
02:44 PM Revision 531b0ee6 (taxeditor): ref #8385: fix specimen pref page
Katja Luther
12:41 PM Revision 8fecfdbd (taxeditor): ref #8385: fix general prefs and publish flag prefs page
Katja Luther
12:06 PM Revision d2a55134 (cdmlib): ref #8385: label issues
Katja Luther
12:06 PM Revision e649e0cb (taxeditor): ref #8385: label issues, search dialog prefs...
Katja Luther
09:08 AM Revision 694a5f9c (cdmlib): ref #8299: CdmLightExportTable new column
Katja Luther

08/26/2019

03:27 PM Revision c793c58b (taxeditor): ref #8385: fix namedetails view configuration and rank selection
Katja Luther
03:16 PM Revision 3d31b229 (taxeditor): ref #8385: fix nomenclatural status page
Katja Luther
02:56 PM feature request #8299: add typification column to scientific name and homotypical group in cdm light
I added two columns to homotypical group table: TypeString (for SpecimenTypeDesignations) and TypeCache (for TextualT... Katja Luther
02:55 PM Revision 423aaea9 (cdmlib): ref #8299: add TypeCache and TypeString to homotypical group table
Katja Luther
02:43 PM Revision f02e08f4 (taxeditor): ref #8385: fix general and abcd pages
Katja Luther
01:46 PM bug #8389: Correct handling of default values with allowOverride=false
Has this been fixed in 5.9 together with #8385. To me it looks like fixed but I did not test systematically.
Pleas...
Andreas Müller
01:41 PM bug #8385: Open issues in DB preferences
~~Generally values recovered by "Restore default" often seem not to be persisted but old values are kept.~~
fixed
Andreas Müller
01:36 PM bug #8385: Open issues in DB preferences
~~Saving of "Publish Flag" does not always work. You may try different states including allow override adn "Restore D... Andreas Müller
01:35 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Andreas Müller wrote:
> > General: When choosing "No - allow override" for all 3 entries th...
Andreas Müller
01:22 PM bug #8385: Open issues in DB preferences
~~Search dialog: "Search also for titlecache ..." -> "... title cache ..."~~
fixed
Andreas Müller
01:20 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> General: When choosing "No - allow override" for all 3 entries the values shown in local pre...
Andreas Müller
01:15 PM bug #8385: Open issues in DB preferences
~~Publish Flage:~~
~~"Not Publish" -> "Don't Publish"~~
~~"Use Default (InheritFromParent)" -> kein Camel Case so...
Andreas Müller
01:10 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Name details view: "Restore Defaults" does not enable "Secundum enabled" and "Secundum Refer...
Andreas Müller
01:08 PM bug #8385: Open issues in DB preferences
~~NDV: "Whole Authorship section" -> "Whole authorship section"~~ Andreas Müller
01:08 PM bug #8385: Open issues in DB preferences
~~NDV: NameCache of the name ... -> "Name cache of the name ..."~~ Andreas Müller
01:07 PM bug #8385: Open issues in DB preferences
~~NDV: "Secundum Reference Details" -> "Secundum reference details"~~ Andreas Müller
01:06 PM bug #8385: Open issues in DB preferences
~~Name details view: "Restore Defaults" does not enable "Secundum enabled" and "Secundum Reference Details"~~
fixed
Andreas Müller
01:02 PM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> Same for ranks. They are not stored.
Hmm, maybe I made a mistake. This seems to work.
Andreas Müller
12:59 PM bug #8385: Open issues in DB preferences
~~Same for ranks. They are not stored.~~
fixed
Andreas Müller
12:58 PM bug #8385: Open issues in DB preferences
~~Nomenclatural status is not stored. Neither after reopening the pref dialog nor after restarting the TaxEditor the ... Andreas Müller
12:13 PM bug #8385: Open issues in DB preferences
~~General: When choosing "No - allow override" for all 3 entries the values shown in local preferences are "Use Defau... Andreas Müller
10:48 AM bug #8385: Open issues in DB preferences
>similar for BiocaseProvider: io.ABCD.providerList is stored with "Keine Provider verfügbar;" which seems to be incor... Andreas Müller
10:45 AM bug #8385: Open issues in DB preferences
Andreas Müller wrote:
> > Biocase Provider for associated DNA should be moved to "Biocase Provider"
> >>this is no...
Andreas Müller
10:38 AM bug #8385: Open issues in DB preferences
>io.ABCD.config is stored in DB with value NULL even if nothing has changed, if this is default value, the default sh... Andreas Müller
10:23 AM bug #8385: Open issues in DB preferences
~~ABCD: Restore defaults does not seem to set allowOverride~~ Andreas Müller
10:21 AM bug #8385: Open issues in DB preferences
Why does the nomenclatural code not provide a default? Is this wanted? Does ABCD not need a nomenclatural code? I rem... Andreas Müller
10:14 AM bug #8385: Open issues in DB preferences
> Biocase Provider for associated DNA should be moved to "Biocase Provider"
>>this is not the same because this pro...
Andreas Müller
10:00 AM bug #8385: Open issues in DB preferences
~~ABCD: Ignore Authorship ... -> Ignore authorship ...~~
fixed
Andreas Müller
09:52 AM bug #8385: Open issues in DB preferences
~~"Show rank in Distribution Editor" should be relabled -> "Show rank column"~~
this is fixed
Andreas Müller
09:05 AM bug #8385: Open issues in DB preferences
~~Name Details View: when selecting "restore defaults" allow override is not set to default~~
this is fixed
Andreas Müller
09:04 AM bug #8385 (Feedback): Open issues in DB preferences
~~Name Details View: if UseDefaults(Disable) is selected the fields are not disabled in the same way as when selectin... Andreas Müller
01:37 PM feature request #8489 (Resolved): Further issues for DB preferences
* ~~Common names vocabulary select list:~~
* ~~has no "allow override" (as not yet present in local preferenc...
Andreas Müller
01:21 PM feature request #8235 (Closed): Create separate menu for term tree editors for each term tree type
Created new ticket for adding characters to feature trees - #8488 Patrick Plitzner
01:20 PM bug #8488 (Closed): Characters can not be added to feature trees
Patrick Plitzner
08:46 AM feature request #8486 (New): Indicating doubtful state in navigator and add set-doubtful to Set-F...
Reviewed the setFlag part and set back to new for main task. Andreas Müller
08:43 AM feature request #8180 (Resolved): Add property term "Presence/Absence" to CDM default terms
Andreas Müller
08:42 AM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
A minor issue: can we have the order of the flags in the same order as in the assistent. That makes it more intuitive... Andreas Müller
08:39 AM feature request #8447 (Closed): Adapt setPublishForSubtree to new parameters for pro parte, misap...
Andreas Müller

08/25/2019

01:39 PM Revision 7e398530 (cdmlib-apps): ref #8479 fix duplicate source repo creation
Andreas Müller
01:38 PM Revision 712e980f (cdmlib-apps): cleanup
Andreas Müller
01:37 PM Revision e3159da6 (cdmlib-apps): ref #8479 manual last commit for FauEu cdm2cdm import
Andreas Müller
01:35 PM Revision b71e7a9e (cdmlib): ref #8479 allow manual last commit for TaxonNodeOutStreamPartitioner
Andreas Müller

08/23/2019

12:44 AM Revision 42134444 (cdmlib): allow TaxonNodeOutStreamPartitioner to be readOnly = false and use in...
Andreas Müller
12:43 AM Revision 774b85df (cdmlib): cleanup
Andreas Müller
11:56 PM Revision e899bbdf (taxeditor): adapt rollback to new name
Andreas Müller
11:55 PM Revision 80b81212 (cdmlib): remove setRollbackOnly to test if this causes exception in TaxEditor ...
Andreas Müller
11:54 PM Revision 29421c03 (cdmlib): rename rollback method
Andreas Müller
11:53 PM Revision 063973ca (cdmlib): cleanup
Andreas Müller
11:44 PM Revision 8da3d0db (taxeditor): fix compile error due to new rollback method
Andreas Müller
11:10 PM Revision def8dda3 (cdmlib-apps): cleanup TaxonExcelCaryophyllalesActivator
Andreas Müller
11:10 PM Revision 5815f954 (cdmlib-apps): ref #8479 FauEu Cdm2Cdm import more or less running but still slow
Andreas Müller
11:09 PM Revision 9718c259 (cdmlib-apps): minor
Andreas Müller
11:07 PM Revision 52b594a2 (cdmlib): add rollback to ICdmRepository and use in TaxonNodeOutStreamPartitioner
Andreas Müller
11:06 PM Revision d0390c50 (cdmlib): cleanup
Andreas Müller
06:20 PM Revision 48a40f35 (taxeditor): ref #8475 Use feature selection dialog in feature state wizard
Patrick Plitzner
04:39 PM Revision 26d39860 (cdmlib): cleanup
Andreas Müller
04:12 PM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > In this case we do not need an "empty" choice for the dropdowns...
Andreas Müller
02:59 PM feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
Andreas Müller wrote:
> In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs...
Patrick Plitzner
10:07 AM feature request #8475: Adapt applicable state detail view elements to FeatureState
In general this ticket can be closed as it works as expected. Andreas Müller
10:06 AM feature request #8475: Adapt applicable state detail view elements to FeatureState
I wonder if we could reduce the availability of "InapplicableIf" and "OnlyApplicableIF" to term nodes of term type "... Andreas Müller
10:02 AM feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs to have both, feature an... Andreas Müller
04:01 PM feature request #8486: Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
Can you add the changes to the ticket or is this not yet pushed? Andreas Müller
04:00 PM feature request #8486 (Resolved): Indicating doubtful state in navigator and add set-doubtful to ...
I preliminary give this to me to not forgot reviewing the next function. Disabling already is a good solution though ... Andreas Müller
09:54 AM feature request #8486 (Closed): Indicating doubtful state in navigator and add set-doubtful to Se...
Indicate the doubtful state in the taxon navigator somehow. E.g. by symbol "?" that we normally use for doubtful info... Katja Luther
03:49 PM Revision 11f52a90 (taxeditor): ref #8475 Remove not needed super method
Patrick Plitzner
03:34 PM feature request #8282: Implement placementDoubtful in TaxEditor
the setDoubtful menu item is now implemented for the navigator, but it was not possible to set the menu to invisible ... Katja Luther
01:45 PM feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
Andreas Müller
12:24 PM feature request #8282: Implement placementDoubtful in TaxEditor
ok Andreas Müller
11:37 AM feature request #8282: Implement placementDoubtful in TaxEditor
Andreas Müller wrote:
> Andreas Müller wrote:
> > Also we should add the doubtful flag to the "Set flags" method in...
Katja Luther
11:35 AM feature request #8282: Implement placementDoubtful in TaxEditor
Katja Luther wrote:
> the checkbox is moved below the publish checkbox.
works as expected. Ticket can be closed o...
Andreas Müller
11:34 AM feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
Andreas Müller wrote:
> Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right ...
Andreas Müller
09:52 AM feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
the checkbox is moved below the publish checkbox. Katja Luther
09:51 AM feature request #8282: Implement placementDoubtful in TaxEditor
Andreas Müller wrote:
> The new field should be close to the taxon node information as it is from taxon node. Curren...
Katja Luther
03:29 PM Revision e9eec17d (taxeditor): Restructure ui.combo package
Patrick Plitzner
03:25 PM Revision 43ed2498 (taxeditor): ref #8282: add setDoubtful to setFlag menu in navigator
Katja Luther
03:20 PM Revision d3ca3e94 (taxeditor): ref #8479 fix removeTaxonAgentRelation in TaxEditor
Andreas Müller
03:16 PM bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.in...
The more sophisticated way is to adapt the underlying method to return an EnumSet, not an ordinary Set. With EnumSet ... Andreas Müller
01:12 PM bug #8482 (Feedback): java.lang.IllegalArgumentException: Collection is empty in DescriptionType....
The problems obviously is fixed and the implementation looks good. Why did you comment the commit with "workaround"? ... Andreas Kohlbecker
03:11 PM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
Andreas Müller wrote:
> Generally it works and can be closed.
>
> Open issue (new ticket?) is that Characters can...
Andreas Müller
12:06 PM feature request #8235 (Closed): Create separate menu for term tree editors for each term tree type
Adjusted the context menu entries. Closing ticket. Patrick Plitzner
09:50 AM feature request #8235: Create separate menu for term tree editors for each term tree type
Generally it works and can be closed.
Open issue (new ticket?) is that Characters can not be added to Featuretrees...
Andreas Müller
09:49 AM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
Andreas Müller wrote:
> "New" and "Delete" is enough, we do not need "... Term Tree"
This seems not yet implement...
Andreas Müller
02:57 PM Revision 570b874c (taxeditor): ref #8475 Only enable details view for feature and character term ...
Patrick Plitzner
02:51 PM Revision b3fbf38e (cdmlib): ref #8180 ... and again try to fix the test data
Andreas Müller
02:37 PM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, mis...
Andreas Müller wrote:
> Andreas Müller wrote:
> > Hybrids are not a set of independent taxa but more a filter on ea...
Katja Luther
11:38 AM feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, mis...
Andreas Müller wrote:
> Hybrids are not a set of independent taxa but more a filter on each group. So we should mayb...
Andreas Müller
09:44 AM feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, mis...
moving synonyms and hybrids is done. Katja Luther
09:42 AM feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplication...
Andreas Müller wrote:
> "Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't kn...
Katja Luther
02:36 PM Revision 0c676821 (taxeditor): ref #8447: disable finish if nothing is selected and hybrids disab...
Katja Luther
02:35 PM Revision 0a788123 (cdmlib): ref #8180 ... and update test data in other projects
Andreas Müller
02:25 PM Revision 03335762 (cdmlib): ref #8180 fix incorrect UUID in test data
Andreas Müller
02:08 PM Revision 57ab1b79 (cdmlib): ref #7600 add explict adders for adder and remover methods to EntityC...
Andreas Müller
02:08 PM Revision b781b5d5 (cdmlib): minor
Andreas Müller
02:08 PM Revision ed29b851 (cdmlib): ref #8479 make TaxonNode.addAgentRelation public and adapt remove met...
Andreas Müller
02:08 PM Revision 8b10ca03 (cdmlib): adapt CdmLightClassificationExport to hasXXX methods
Andreas Müller
02:08 PM Revision 749e8fb4 (cdmlib): ref #8180 Add vocabulary to test data
Andreas Müller
01:06 PM task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermT...
my implementation now is generic.
> Also it might be nice to have a little test that it works. Have you tested in ...
Andreas Kohlbecker
10:28 AM task #8437 (Feedback): ITermTreeService provides a list method which supports filtering by TermT...
Andreas Kohlbecker wrote:
> Agreed ... and implemented in the way you pointed out.
The current implementation is ...
Andreas Müller
10:21 AM task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
To me it looks like commit 1a5b2194 is not related to *this* ticket. Can you please check? Andreas Müller
12:59 PM Revision acdfa184 (cdmlib): ref #8437 using TermType.getGeneralizationOf() to expand the termType...
Andreas Kohlbecker
12:44 PM Revision 6d8c9ff0 (cdmlib): add doubtful flag to TaxonNodeDto
Katja Luther
12:30 PM Revision aa312f10 (taxeditor): ref #8475 Enhance FeatureStateWizard
- Pre-select single parent feature if exists
- filter out features without supported categorical states
Patrick Plitzner
12:07 PM task #8406 (Closed): specimens and occurrence code cleaning and harmonization
dead code removed.
I think we can close this issue now since all open tasks have been copied to other tickets.
Andreas Kohlbecker
09:04 AM task #8406: specimens and occurrence code cleaning and harmonization
Andreas Kohlbecker wrote:
> thank you for fixing this.
>
> there are two commented code parts in this method:
> ...
Katja Luther
12:05 PM Revision c1639218 (cdm-dataportal): ref #8406 removing commented dead code
Andreas Kohlbecker
12:04 PM Revision 0d40526c (taxeditor): remove debug message
Patrick Plitzner
12:04 PM Revision 38f0da6e (taxeditor): ref #8235 adjust context menu items
Patrick Plitzner
11:21 AM Revision 47ca6691 (cdmlib): cleanup
Andreas Müller
11:18 AM Revision 2c2b731a (cdmlib): fix clone method for User
Andreas Müller
11:17 AM Revision b0a48ddf (cdmlib): ref #8180 Add Presence state vocabulary to default terms
Andreas Müller
11:08 AM Revision 04eabef3 (cdmlib): ref #8479 add hasXXX methods to TaxonNodeFilter
Andreas Müller
11:07 AM Revision e68bc8fa (cdmlib): ref #8479 make TaxonNodeOutStreamPartitioner read only by default.
Andreas Müller
10:34 AM feature request #7450 (Closed): Allow setPublish for subtree to include misapplied names and pro ...
Moved better reporting to new ticket #8487 and close *this* ticket. Andreas Müller
10:33 AM feature request #8487 (New): Report results of set publish
It should include numbers per each group (taxa, synonyms, MAN, ...)
Also those MAN, ppSyns, shared taxa, which wer...
Andreas Müller
10:09 AM bug #8481 (Rejected): NPE when opening feature tree
I agree. Had a look to the data and for some reason the term with the given id really doesn't exist anymore. Don't kn... Andreas Müller
09:55 AM feature request #8470: Handle username constraints in user and group editing
I will implement this for the next release. Katja Luther
09:51 AM Revision b850c728 (taxeditor): ref #8282: move doubtful checkbox below publish checkbox
Katja Luther
09:50 AM Revision aee8ed69 (taxeditor): ref #8447: move hybrids and synonyms
Katja Luther
09:40 AM Revision 245bd5bc (taxeditor): ref #8447: only misapplied names or pro parte syn should work as well
Katja Luther
09:31 AM Revision 962e47b4 (taxeditor): ref #3472: adapt labels for operation
Katja Luther
09:31 AM feature request #3472 (Closed): Update name in source data when changing an accepted taxon into a...
the new ticket is #8478 and the labels are adapted. Katja Luther

08/22/2019

04:10 PM Revision c2b34f0b (taxeditor): Do not show admin menu when not logged in
Patrick Plitzner
04:10 PM Revision a9abb9b0 (taxeditor): Fix "General" missing menu items
Patrick Plitzner
12:05 PM Revision 0c64a24d (taxeditor): Hide terms menu when not connected
Patrick Plitzner
11:34 AM Revision 7f9d6ac4 (cdm-vaadin): removing vaading testbench test
Andreas Kohlbecker
11:33 AM Revision c4ce17b3 (cdm-vaadin): removing runtime artifact
Andreas Kohlbecker

08/21/2019

04:12 PM bug #8481 (Feedback): NPE when opening feature tree
Looking at the stacktrace this seem like corrupted data as the exception happen during TermRelationBase.getTerm().
...
Patrick Plitzner
04:10 PM feature request #8485 (Closed): Add column groups to character matrix
Does not have to be reviewed because still experimental Patrick Plitzner
04:09 PM feature request #8485 (Resolved): Add column groups to character matrix
Applied in changeset commit:taxeditor|c264cd9262db5bb03b83d94858c559cc985b8bc2. Patrick Plitzner
03:09 PM feature request #8485 (Closed): Add column groups to character matrix
Groups should reflect the hierarchy of the character tree. Patrick Plitzner
04:10 PM feature request #8235 (Resolved): Create separate menu for term tree editors for each term tree type
Patrick Plitzner
04:09 PM Revision c9332db4 (taxeditor): Move util method to StoreUtil
Patrick Plitzner
04:09 PM Revision 422fbab5 (taxeditor): ref #8235 Fix term tree sub menu and context menu
Patrick Plitzner
04:09 PM Revision c264cd92 (taxeditor): fix #8485 Add column groups to character matrix
Patrick Plitzner
12:29 PM bug #8484 (New): Exception is swallowed in taxon navigator
In a corrupt database with taxon nodes without classification I got the following exception in the log file.
However...
Andreas Müller
11:49 AM task #8483 (New): Return EnumSets in EnumeratedTermVoc.getGeneralizationOf and similar methods
This may prevent from errors like in #8482 Andreas Müller
11:46 AM bug #8482 (Resolved): java.lang.IllegalArgumentException: Collection is empty in DescriptionType....
Applied in changeset commit:cdmlib|244c62c6bee1863dfe79d71e0ecae7bdeb4d06b5. Andreas Müller
11:18 AM bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.in...
Can be reproduced by:
http://int.e-taxonomy.eu/cdmserver/integration_palmae/portal/taxon/ce870eca-0422-4a3c-b849-0...
Andreas Kohlbecker
11:46 AM Revision 244c62c6 (cdmlib): fix #8482 workaround fix for DescriptionType includes error
Andreas Müller
11:46 AM Revision 59b19202 (cdmlib): minor
Andreas Müller
11:09 AM bug #8385 (Resolved): Open issues in DB preferences
please review Katja Luther
09:51 AM Revision 4a3a3258 (taxeditor): add higher taxon to search options for specimen - taxeditor
Katja Luther
09:49 AM Revision 319a163b (cdmlib): add higher Taxon search option to specimen search
Katja Luther
09:17 AM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from s...
Hallo Andreas,

danke für deine Einschätzung. Da du mich in meiner Auffassung bestätigst, werde ich das "is accept...
Andreas Kohlbecker
09:17 AM feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from s...
Hallo Andreas,

das war mir völlig unbekannt, dass wir sowas überhaupt haben/hatten. Daher hatte ich das ganze...
Andreas Kohlbecker

08/20/2019

12:52 PM Revision 7dc115d1 (taxeditor): adapt display of multiple status in distr editor to preference value
Katja Luther
11:51 AM bug #8481: NPE when opening feature tree
I get the same exception when trying to add an InapplicableIf to "Test Feature Tree" -> Citation -> Leaf color -> Ana... Andreas Müller
11:47 AM bug #8481 (Rejected): NPE when opening feature tree
When opening feature tree "Testdasdfa" on rem_conf_am I got
~~~
login : admin
editor version : 5.9.0.20190819225...
Andreas Müller
11:45 AM feature request #8235: Create separate menu for term tree editors for each term tree type
"New" and "Delete" is enough, we do not need "... Term Tree" Andreas Müller
11:43 AM feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
Feature Tree Editors still have "New Structure Tree" and "New Property Tree" submenu.
Each Term type should have its...
Andreas Müller
11:04 AM Revision 49078739 (taxeditor): minor in l10n
Katja Luther
 

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