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From 11/20/2019 to 12/19/2019

12/19/2019

05:14 PM bug #8739 (Resolved): remaining issues for description detail page
AS far as I see, this ticket is either solved or remaining issues are copied to new tickets.
Therefore I suggest c...
Andreas Kohlbecker
05:12 PM Revision 753a8083 (cdm-dataportal): ref #8739 description page better and stylable DOM
Andreas Kohlbecker
05:08 PM task #8786 (Feedback): Display of mean value with min max
Andreas Kohlbecker
05:08 PM task #8786 (Resolved): Display of mean value with min max

> abgesehen davon, dass die Mittelwertangabe zwischen Min und Max unüblich ist, ... Eine bessere Darstellung wär...
Andreas Kohlbecker
03:59 PM Revision 16ab19f1 (cdm-dataportal): ref #8781 first feature element starts with upper case letter...
Andreas Kohlbecker
03:00 PM feature request #8769 (New): Biocase import configuration should be shown when clicking on import...
Andreas Kohlbecker wrote:
> I fear that just opening the import config dialog does not really help.
> I suggest to ...
Andreas Müller
02:59 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I find it very useful for debugging that computed description...
Andreas Kohlbecker
02:28 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
Andreas Kohlbecker wrote:
> I find it very useful for debugging that computed descriptions can be viewed and modifie...
Andreas Müller
02:40 PM bug #8785: Improve add+delete for specimen (descriptions) in the descriptive data matrix
Katja Luther wrote:
> this should be possible in character matrix. I have to test this.
yes, it should be handled...
Andreas Müller
02:35 PM bug #8785 (In Progress): Improve add+delete for specimen (descriptions) in the descriptive data m...
this should be possible in character matrix. I have to test this. Katja Luther
11:58 AM bug #8785: Improve add+delete for specimen (descriptions) in the descriptive data matrix
Also this one I put to current milestone for same reason as #8784 Andreas Müller
11:58 AM bug #8785 (Resolved): Improve add+delete for specimen (descriptions) in the descriptive data matrix
The issue is described in #8784 but I created a new ticket as it is as deleting a specimen description (which is hand... Andreas Müller
02:30 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
As this is a critical issue I suggest to put it into 5.13. (5.12 is probably not possible as the task is difficult). ... Andreas Müller
02:23 PM bug #8784: Deleting a specimen description not possible
fixing the delete handling in deletehandler of the factual data view. Now the deletion of descriptions and descriptio... Katja Luther
11:57 AM bug #8784 (In Progress): Deleting a specimen description not possible
this is already in process because I already found this problem while working on #8782 Katja Luther
11:54 AM bug #8784: Deleting a specimen description not possible
I put this into the current milestone because it is a blocker for undoing incorrect/unwanted data entries. Andreas Müller
11:53 AM bug #8784 (Closed): Deleting a specimen description not possible
Currently it seems to be impossible to delete a specimen description.
In the specimen LIST editor specimen descrip...
Andreas Müller
02:21 PM Revision a776559e (taxeditor): ref #8784: fix deleteHandler for factual data
Katja Luther
02:21 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
Looks fine now Andreas Müller
01:51 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
Andreas Müller wrote:
> Now the semicolon is missing everywhere, it should be removed ONLY at the end:
>
Proble...
Andreas Kohlbecker
01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
An example can be found here: http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/taxon/8718... Andreas Müller
01:19 PM feature request #8781 (Feedback): Descriptions (aggregated): futher improvements
Andreas Müller
01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
Now the semicolon is missing everywhere, it should be removed ONLY at the end:
![](picture967-1.png)
The capita...
Andreas Müller
02:12 PM Revision bea70813 (cdm-dataportal): ref #8739 labels of CategoricalData and QuatitativeData stylable
Andreas Kohlbecker
01:50 PM Revision caf1ed73 (cdm-dataportal): ref #8781 restoring lost semicolons in description element st...
Andreas Kohlbecker
10:20 AM Revision 3db61e83 (cdm-dataportal): ref #8739 description page: improved dom and using stylesheet...
Andreas Kohlbecker
01:10 AM Revision 6f40bb03 (cdmlib): cleanup
Andreas Müller
01:10 AM Revision e04e5f03 (cdmlib): ref #8469 use correct handling for removeChildNode
Andreas Müller

12/18/2019

12:53 AM Revision ca83d76f (cdmlib): ref #8469 add useTaxonHierarchy for PolytomousKeyGenerator
Andreas Müller
12:51 AM Revision e667c033 (cdmlib): ref #8469 fix remove taxon node from taxon for TaxonNode.remove()
Andreas Müller
12:49 AM Revision af44169e (cdmlib): cleanup
Andreas Müller
05:03 PM Revision ad7fa57c (cdm-dataportal): ref #8739 description page: solving problems with unit displa...
Andreas Kohlbecker
04:38 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
I find it very useful for debugging that computed descriptions can be viewed and modified in the editor. Can't we all... Andreas Kohlbecker
02:43 PM bug #8783 (Resolved): Massive Heap consumption in server instance opening the Description-Matrix ...

This was observed with a locally running cdmlib-remote-webapp instance configured with 700 MB of Heap:
![](pic...
Andreas Kohlbecker
01:39 PM bug #8782 (Closed): Delete a description included in a CdmSource should not be possible
mail AM:
ich habe gerade DescriptionBase gelöscht (aus dem Facts View heraus), die noch verlinkt waren über eine C...
Katja Luther
01:24 PM bug #8780: Repair sortindex does not work on TermTree index
This should be fixed. Please review. Andreas Müller
11:57 AM bug #8780 (Resolved): Repair sortindex does not work on TermTree index
Applied in changeset commit:cdmlib|dad659722b698863a2dee711782748b0de216a71. Andreas Müller
09:16 AM bug #8780 (Closed): Repair sortindex does not work on TermTree index
Andreas Müller
01:11 PM Revision 7b8c575b (cdmlib): cleanup
Andreas Müller
01:00 PM Revision cc6c7d5e (cdmlib): cleanup
Andreas Müller
01:00 PM Revision 6c143263 (cdmlib): ref #8780 fix autowire issue for repository (workaround)
Andreas Müller
12:47 PM Revision 86f7ea85 (cdmlib): cleanup
Andreas Müller
12:43 PM Revision a483ffcd (cdmlib): ref #8780 test nodes recursive and generic
Andreas Müller
12:42 PM Revision 365cff58 (cdmlib): cleanup
Andreas Müller
12:41 PM Revision a2928800 (cdmlib): fix ConcurrentSessionTest testdata
Andreas Müller
12:21 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
ticket complete Andreas Kohlbecker
12:08 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
Hallo Andreas,
1. am Ende der aggregated descriptions gibt es derzeit im noch ein überflüssiges Komma. Könntest du...
Andreas Kohlbecker
12:20 PM Revision 2bc2b13e (cdm-dataportal): ref #8781 first feature element starts with upper case letter
Andreas Kohlbecker
12:18 PM Revision e425fd81 (cdmlib): cleanup
Andreas Müller
12:17 PM Revision 1d287b23 (cdmlib): ref #8780 reduce test dataset
Andreas Müller
12:09 PM Revision 2e5f796f (cdm-dataportal): ref #8781 removing semicolon from end of description
Andreas Kohlbecker
11:59 AM Revision 3076588b (cdmlib): ref #8780 add SortIndexUpdaterWrapperTest for term nodes
Andreas Müller
11:58 AM Revision b171b803 (cdmlib): ref #8780 cleanup SortIndexUpdaterWrapper
Andreas Müller
11:58 AM Revision 386112b5 (cdmlib): replace featureTreeService by termTreeService
Andreas Müller
11:57 AM Revision 0a165781 (cdmlib): cleanup
Andreas Müller
11:46 AM Revision 87aa88d6 (cdm-dataportal): ref #8739 aggregated description feature block: explainig bra...
Andreas Kohlbecker
11:22 AM feature request #7981 (In Progress): Add configuration UI for matrix description aggregation
Katja Luther
11:21 AM Revision 6722d9a5 (cdm-dataportal): ref #8739 description page: explainig bracketed numbers
Andreas Kohlbecker
09:47 AM Revision 1da7de81 (cdmlib): ref #8780 cleanup
Andreas Müller
09:47 AM Revision dad65972 (cdmlib): fix #8780 fix term node sortindex updater (TermNode->TermRelation)
Andreas Müller
09:36 AM Revision 558d4b79 (cdmlib): cleanup
Andreas Müller
09:26 AM Revision 61cfb399 (cdmlib): cleanup
Andreas Müller

12/17/2019

04:01 PM Revision 01e26d23 (taxeditor): ref #7981: remove aggregation call in wizard
Katja Luther
03:55 PM bug #8566 (Rejected): Recursive aggregation for common parent taxon does not work if not in data set
This is expected behavior, not a bug IMO. However, with the UI aggregation trigger we may have more possibilities to ... Andreas Müller
03:47 PM feature request #8686: Support CdmLink sources in bibliography
An example could be shown here: http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/taxon/... Andreas Müller
03:46 PM feature request #8686 (Feedback): Support CdmLink sources in bibliography
Andreas Kohlbecker wrote:
> **Note**: The links to the taxa are having a fragment which directly focuses on the "Agg...
Andreas Müller
03:42 PM Revision 20bfe15b (cdm-dataportal): fix #8779 harmonization of taxon display in descriptions
Andreas Kohlbecker
03:40 PM bug #8779 (Resolved): Description page: use render_taxon_or_name() for creating the page and desc...
after harmonization the top of the page now looks like
![](picture451-1.png)
If more detailed display of the ta...
Andreas Kohlbecker
03:20 PM bug #8779 (Closed): Description page: use render_taxon_or_name() for creating the page and descri...
in `compose_description_table()` the `render_taxon_or_name()` method must be used for portal wide consistend display ... Andreas Kohlbecker
03:35 PM feature request #8777: Make visiblity of CDM Source configurable
Andreas Müller wrote:
> ... hmm, maybe an even better solution is to show the field only if data exists. Is this pos...
Andreas Müller
03:08 PM feature request #8777: Make visiblity of CDM Source configurable
... hmm, maybe an even better solution is to show the field only if data exists. Is this possible? Andreas Müller
03:00 PM feature request #8777 (New): Make visiblity of CDM Source configurable
see #8688, for some projects the CDM Source should not be visible (because not used). This is similar to ID in Source... Andreas Müller
03:15 PM feature request #8688 (Feedback): Make OriginalSourceBase.cdmSource visible in TaxEditor
The current solution shows titleCache+uuid for identifiable entities. This is too much. For now we need only the titl... Andreas Müller
03:12 PM feature request #8778 (New): Have explicit subclass for CdmSourceLink sources
copied from #8688: Possible open questions related: do we want to have a new subclass for OriginalSourceBase which on... Andreas Müller
02:27 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon
I think we can close this. If problems occurr we may reopen or immediately fix. Andreas Müller
02:14 PM feature request #8044 (Feedback): Add "Move to..." menu to term editor
* For this usecase the title and the description in the term selection wizard needs to be adapted. It should be somet... Andreas Müller
01:56 PM bug #7994 (Duplicate): Implement allowDuplicates for term trees in TaxEditor
This is a duplicate for #8477, #8776 Andreas Müller
01:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:47 PM feature request #8476 (In Progress): Implement support for TermCollection.isFlat in TaxEditor
Only the flag is editable until now so I put this back to InProgress. Andreas Müller
01:53 PM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:50 PM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees
Only editing the flag is implemented until now so I put it back to InProgress Andreas Müller
01:52 PM bug #8776: Open issues for TermCollection.allowDuplicates handling in TaxEditor
Note: saving often does not work due to issues to be solved in #8774 Andreas Müller
01:25 PM bug #8776 (New): Open issues for TermCollection.allowDuplicates handling in TaxEditor
* The error message currently looks like an unhandled error. The message should only inform about the fact that dupli... Andreas Müller
01:41 PM feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor
Generally this works but there are some open issues. I moved them all to a new ticket: #8776 Andreas Müller
12:19 PM feature request #8242 (Closed): Implement filtered combo boxes for state selection in CharacterMa...
This is generally implemented. There are follow up tickets like #8254 and #8775 Andreas Müller
12:14 PM bug #8313 (Closed): Multiple categorical data get deleted when clicked on in Character Matrix
This seems to work now. There are issues with the general (rapid) data entry of categorical data into the matrix. The... Andreas Müller
12:12 PM feature request #8775 (New): Improve (rapid) data entry into characater matrix for categorical data
Quantitative data can be entered into the matrix very fast by only using the keyboard via return, left, right and num... Andreas Müller
11:50 AM feature request #8665 (Closed): Rename "New" to "New Tree" in Term Tree editors
Andreas Müller
11:44 AM bug #8751: Replace saveOrUpdate() in AbstractTermTreeEditor
This is probably more or less a duplicate for #8774 and will be fixed by #8774 Andreas Müller
11:41 AM bug #8663 (Duplicate): LIE when trying to save a tree node
This is probably a duplicate for #8744 Andreas Müller
11:38 AM bug #8744 (Closed): LazyInitializationException (LIE) saving the Character Editor
The LIE itself seems to be fixed by switching to merge() but there are still very serious issues related to saving of... Andreas Müller
11:28 AM bug #8744: LazyInitializationException (LIE) saving the Character Editor
Andreas Müller wrote:
> hmm, it does not really seem to be the problem, but I found that there seems no session to b...
Andreas Müller
11:36 AM bug #8774 (In Progress): Reimplement term tree editors to implement the general save strategy
Currently term trees save changes in the hierarchy (including new terms/nodes) immediately in the DB. This is against... Andreas Müller
11:24 AM bug #8748 (Closed): Supported state vocabularies should be ordered
This is fixed and is a very nice and important feature. Andreas Müller
11:22 AM feature request #8755 (Closed): Show all structure/property trees in CharacterEditor
Follow up issues are moved to extra tickets so we can close this one. Andreas Müller
11:20 AM feature request #8773 (New): [DISCUSS] Allow editing structure and properties tree in Character E...
copied from #8755#note-3:
"with the current state of the structure tree it is sometimes wanted to extend this tree...
Andreas Müller
10:23 AM feature request #8772 (New): Recognize Character duplicates
Characters constructed from structure and property (and structural modifier) can be recognized as duplicates by this ... Andreas Müller
09:10 AM feature request #8771 (Feedback): display of average value with precision so that it differs from...
do you agree with my suggestion? Andreas Kohlbecker
09:07 AM feature request #8771 (Resolved): display of average value with precision so that it differs from...
The display of decimal place for average value should be adjusted so that it differs from the values on min and max (... Andreas Kohlbecker

12/16/2019

05:05 PM feature request #8769 (Feedback): Biocase import configuration should be shown when clicking on i...
I fear that just opening the import config dialog does not really help.
I suggest to solve this problem differently:...
Andreas Kohlbecker
02:11 PM feature request #8769 (New): Biocase import configuration should be shown when clicking on import...
The configuration dialog should be opened everytime the import button is clicked.
At the moment the configuration ...
Katja Luther
04:58 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
ready for review Andreas Kohlbecker
01:41 PM bug #8766 (Resolved): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
Applied in changeset commit:cdm-dataportal|f63479aed323653e11922bb4dc3865537c5904cb. Andreas Kohlbecker
04:33 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found
fixed Andreas Kohlbecker
04:33 PM bug #8770 (Resolved): NameControllers responds with all entities when name uuid is not found
Applied in changeset commit:cdmlib|cc3ce6e30c74308b6697f6007d03d37b00cce8ff. Andreas Kohlbecker
04:25 PM bug #8770 (Closed): NameControllers responds with all entities when name uuid is not found
When the uuid in `portal/name/c0b7aa13-301d-4a0c-a8c6-843e96c34ba8/taxonNameDescriptions.json` is not found in the db... Andreas Kohlbecker
04:32 PM Revision cc3ce6e3 (cdmlib): fix #8770 responding with http code 404 in case name uuid is not found
Andreas Kohlbecker
04:01 PM Revision b0b87ef4 (cdm-dataportal): ref #8658 relaxing palmweb test assertions to conform new dat...
Andreas Kohlbecker
02:42 PM Revision d43a3486 (cdm-dataportal): ref #8658 again using feature name as key for blocks (uuid br...
Andreas Kohlbecker
01:41 PM Revision f63479ae (cdm-dataportal): fix #8766 improving display of statistical measures (sample s...
Andreas Kohlbecker
11:41 AM Revision 86bbdab9 (taxeditor): ref #7981: add aggregation wizard to character matrix
Katja Luther
11:39 AM Revision bb7eab5c (taxeditor): ref #7981: externalization of strings
Katja Luther
11:35 AM Revision 70e39ea8 (taxeditor): ref #7981: implement aggregation configuration wizard
Katja Luther
09:26 AM Revision cba88a5e (cdmlib): rename ExternalNameIdentifier to ExternalIdentifier
Katja Luther

12/13/2019

03:47 PM bug #8739: remaining issues for description detail page
removing obsolete conversation records from the issue description since these points are already handled in other iss... Andreas Kohlbecker
03:40 PM bug #8739 (In Progress): remaining issues for description detail page
Andreas Kohlbecker
03:32 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
Hallo Andreas,
erstmal zu Extrems und so. Eigentlich sind min und max die Extremwerte. TypicalXXXBoundary sind die...
Andreas Kohlbecker
03:32 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
Hallo,
ich habe eine Verständnisfrage zur Ausgabe Quantitativer Daten mit Min, Max und Exact values.
Beispiel w...
Andreas Kohlbecker
08:15 AM bug #8766 (Closed): Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
1. nur [27],
2. das sollte dann irgendwo generell erklärt werden.
Übrigens sollten die anderen counts dann auch...
Andreas Kohlbecker
03:22 PM Revision ff197011 (cdmlib): ref #8477 Check if duplicates are allowed before adding terms to trees
Patrick Plitzner
02:41 PM Revision eab86ee2 (cdm-dataportal): ref #8739 removing dead code
Andreas Kohlbecker
02:14 PM task #8768 (New): DISCUSS: place CdmLinks in a separate pseudo feature block?
Norbert [Freitag, 22. November 2019 10:22]
sorry, nee, das gefällt mir überhaupt nicht!!
Einmal schon nicht weg...
Andreas Kohlbecker
02:07 PM feature request #8686 (Resolved): Support CdmLink sources in bibliography
**Note**: The links to the taxa are having a fragment which directly focuses on the "Aggregation Description"
As ...
Andreas Kohlbecker
02:03 PM feature request #8686: Support CdmLink sources in bibliography
Andreas Müller wrote:
> Support for link to taxa has been added in #8724. So we need to check or implement that also...
Andreas Kohlbecker
02:02 PM Revision 4dfb209d (cdmlib): fixing ClassCastException in CdmLinkSource for taxa
Andreas Kohlbecker
01:52 PM Revision fec3fd41 (cdm-dataportal): ref #8686 adding support for Taxon CdmLinks in "Bibliography"
Andreas Kohlbecker
01:48 PM Revision d29f2403 (taxeditor): aggregation configuration wizard page super class
Katja Luther
01:04 PM bug #8687: Description page must show all DescriptionElement subclasses
Assigning AK because it is a dataportal ticket Patrick Plitzner
01:02 PM feature request #8655 (Duplicate): Handle duplicates in term tree editor
Patrick Plitzner
12:47 PM bug #7994 (Resolved): Implement allowDuplicates for term trees in TaxEditor
Patrick Plitzner
09:54 AM bug #7994 (In Progress): Implement allowDuplicates for term trees in TaxEditor
Patrick Plitzner
12:46 PM Revision d800b880 (taxeditor): ref #8476, #8474 Set isFlat to false when creating a term tree
Patrick Plitzner
12:46 PM feature request #8474 (Resolved): Make TermCollection.orderRelevant usable for TermTrees
Patrick Plitzner
09:54 AM feature request #8474 (In Progress): Make TermCollection.orderRelevant usable for TermTrees
Patrick Plitzner
12:44 PM feature request #8476 (Resolved): Implement support for TermCollection.isFlat in TaxEditor
Patrick Plitzner
12:42 PM feature request #8477 (Resolved): Implement support for TermCollection.allowDuplicates in TaxEditor
Patrick Plitzner
09:54 AM feature request #8477 (In Progress): Implement support for TermCollection.allowDuplicates in TaxE...
Patrick Plitzner
12:38 PM Revision a9c3f41a (taxeditor): ref #8477 Set allow duplicates to false when creating a term tree
Patrick Plitzner
12:32 PM Revision 2ba9931c (cdmlib): ref #8477 Check if duplicates are allowed before adding terms to trees
Patrick Plitzner
12:31 PM Revision 46809662 (cdmlib): fix abcd import when gathering date of associated unit is null
Katja Luther
12:22 PM Revision 8de7ec9f (cdmlib): make all MAN uuids public
Andreas Müller
12:22 PM Revision 53838507 (cdmlib): remove unneccary instanceof
Andreas Müller
12:18 PM Revision 236273db (taxeditor): ref #8477 Check if duplicates are allowed before adding terms to t...
Patrick Plitzner
11:40 AM Revision d1d5ffd0 (cdmlib): fix abcd import when gathering date of associated unit is null
Katja Luther
10:23 AM Revision 1e03f16d (taxeditor): ref #8450 Check for duplicate features in matrix startup
Patrick Plitzner
10:03 AM Revision 4f2c16a0 (taxeditor): ref #8476, #8474, #7994, #8477 Add checkboxes for term tree flags
Patrick Plitzner
08:52 AM bug #8767 (New): Change Synonym to Misapplied Name handles publish flag not correctly
When changing an unpublished synonym to a MAN aftwards the MAN is published. This is not correct. The publish flag sh... Andreas Müller

12/12/2019

06:11 PM bug #8718 (Closed): polytomousKey page: better handling of invalid uuids
"Named area" is the term being used in general in the dataportal, but this is another issue - closing this ticket. Andreas Kohlbecker
06:00 PM bug #8718 (Feedback): polytomousKey page: better handling of invalid uuids
Yes it seems to work now.
Only minor issue: instead of Named Area we could say simply "Area". Named area is a bit ...
Andreas Müller
06:07 PM feature request #8758: Aggregated Descriptions: order states by frequency
please review or pass to someone else of the additivity team. Andreas Kohlbecker
06:06 PM feature request #8758 (Resolved): Aggregated Descriptions: order states by frequency
Applied in changeset commit:cdm-dataportal|4c9d7e324d3c0e2795465c774284abb0704c7e7c. Andreas Kohlbecker
06:06 PM Revision 4c9d7e32 (cdm-dataportal): fix #8758 aggregated descriptions: states ordered by frequency
Andreas Kohlbecker
05:27 PM Revision 089fb6ea (cdm-dataportal): ref #8765 fixing bug regarding order of toc items
Andreas Kohlbecker
03:56 PM bug #8765 (Resolved): defined weight for feature and pseudo feature blocks and position "Descript...
This is now implemented for all pseudo feature blocks. The position of the blocks can be configured in the setting in... Andreas Kohlbecker
03:45 PM bug #8765 (Resolved): defined weight for feature and pseudo feature blocks and position "Descript...
*recovery from accidentally deleted previous ticket #8658*
----
copied from #8596#note-8
* weight value for ...
Andreas Kohlbecker
03:08 PM Revision c3a41ddb (cdm-dataportal): fix #8658 position of all pseudo feature blocks configurable ...
Andreas Kohlbecker
02:47 PM bug #8313 (Resolved): Multiple categorical data get deleted when clicked on in Character Matrix
Patrick Plitzner
02:45 PM Revision a1171a3c (taxeditor): ref #8313 Adapt display converter to Collection<String> display value
Patrick Plitzner
02:45 PM Revision 74e7e3df (cdmlib): ref #8313 Return a collection of strings for display value
Patrick Plitzner
01:15 PM bug #8764 (New): moving subtree results in NPE
Moving a subtree in character editor results in NullPointerException.
This problem again comes with null values in...
Katja Luther
11:47 AM Revision bf8aea21 (cdm-dataportal): ref #8658 constants for pseudo feature blocks
Andreas Kohlbecker
11:28 AM bug #8735 (Duplicate): Character Node Editor: allow line breaks at slashes in structure represent...
Andreas Müller
10:52 AM task #8716: Configure taxeditor to run with GTK2 in linux
Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > On my home desktop PC with Linux Mint, Cinnamon desktop I h...
Patrick Plitzner
10:12 AM task #8716: Configure taxeditor to run with GTK2 in linux
Patrick Plitzner wrote:
> On my home desktop PC with Linux Mint, Cinnamon desktop I have no problems but I also did ...
Andreas Kohlbecker
10:39 AM Revision b6ebeb25 (taxeditor): add check for potential session exception
Patrick Plitzner
10:26 AM bug #8511: The structure path in the character details view should have a line break
please also close the duplicate if this issue is fixed Patrick Plitzner
10:25 AM bug #8511 (Resolved): The structure path in the character details view should have a line break
Applied in changeset commit:taxeditor|f8139f49d666289b10c06aa59d09986adebfe258. Patrick Plitzner
10:17 AM bug #8511: The structure path in the character details view should have a line break
This issue has a duplicate #8735
please see this ticket for ideas on handling this issue
Andreas Kohlbecker
09:18 AM bug #8511 (In Progress): The structure path in the character details view should have a line break
Patrick Plitzner
10:24 AM Revision f8139f49 (taxeditor): fix #8511 Add line break to structure and property path in detail ...
Patrick Plitzner
10:04 AM bug #8757 (Closed): ArrayIndexOutOfBoundsException in term combo
Seems to work as expected. Andreas Müller
09:41 AM feature request #8756 (Feedback): Refresh button for structure tree and property tree in Characte...
It does not work. I changed the order of the properties tree in demo bupleurum 01. After saving an pushing refresh bu... Andreas Müller

12/11/2019

09:54 PM bug #8511: The structure path in the character details view should have a line break
.. and this is probably a no-brainer? Andreas Müller
09:52 PM bug #8338: Newly created structural modifier terms are not available in details view
This is also a bit annoying, therefore I move it to 5.12 in case time is there to fix it. Andreas Müller
06:46 PM Revision 034ce108 (cdmlib): ref #8736 minor performance improvement when adding specimens to matrix
Patrick Plitzner
06:19 PM bug #8736 (Resolved): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
Applied in changeset commit:cdmlib|9e89976076d8a735426f40e4cebb49c42bd5ab33. Patrick Plitzner
06:19 PM Revision 9e899760 (cdmlib): fix #8736 Fix LIE when adding specimens to matrix
Patrick Plitzner
06:09 PM feature request #8688: Make OriginalSourceBase.cdmSource visible in TaxEditor
Current implementation shows the titleCache if it is an IdentifiableEntity. It shows the UUID if it is a CdmBase. Oth... Patrick Plitzner
06:08 PM feature request #8688 (Resolved): Make OriginalSourceBase.cdmSource visible in TaxEditor
Applied in changeset commit:taxeditor|5d945a6ece2394f970845815a0dc7f08bb70e1b4. Patrick Plitzner
06:07 PM Revision 5d945a6e (taxeditor): fix #8688 Make OriginalSourceBase.cdmSource visible in TaxEditor
Patrick Plitzner
05:43 PM task #8716 (Feedback): Configure taxeditor to run with GTK2 in linux
On my home desktop PC with Linux Mint, Cinnamon desktop I have no problems but I also did not have any problems befor... Patrick Plitzner
05:26 PM feature request #8044: Add "Move to..." menu to term editor
This is not not experimental anymore.
Known issues when reviewing:
* It is still possible to select multiple te...
Patrick Plitzner
05:25 PM bug #8763 (Duplicate): Remaining issues for "Move term" in term editor
Known issues:
* ~~It is still possible to select multiple terms in the term search dialog but a warning will appea...
Patrick Plitzner
05:17 PM Revision 2c450f49 (taxeditor): Remove "experimental" status from
- polytomous key generation
- move term menu in term editor
- export ontology in term tree editor
Patrick Plitzner
05:07 PM feature request #8755: Show all structure/property trees in CharacterEditor
Andreas Müller wrote:
> We tested intensively today during the integrated taxonomy course. It worked fine.
>
> 2 ...
Patrick Plitzner
12:36 PM feature request #8755 (Feedback): Show all structure/property trees in CharacterEditor
I am passing this ticket to you since the questions in comment 3 are addressed to the implementer. Andreas Kohlbecker
04:22 PM Revision bf3acb28 (taxeditor): fix potential NPE
Patrick Plitzner
03:46 PM Revision c7d8a579 (cdm-dataportal): moving description related functions into descriptions.inc
Andreas Kohlbecker
03:43 PM Revision 6b9012bd (cdm-dataportal): renaming method compose_cdm_description to compose_cdm_descri...
Andreas Kohlbecker
03:36 PM feature request #8762 (New): [DISCUSS] Do we need/want to report a count for missing data in aggr...
... for reasons why this could be useful see #8759#note-4 Andreas Müller
03:33 PM feature request #8759: Description aggregation : suppress state present when more details are ava...
This case usually is dirty or incomplete data. Dirty data should be shown on the portal to make it findable (correcta... Andreas Müller
03:00 PM feature request #8759 (Feedback): Description aggregation : suppress state present when more deta...
I adapted the description to avoid misunderstandings
In your comment you seem to suggest to show the following si...
Andreas Kohlbecker
02:43 PM feature request #8759: Description aggregation : suppress state present when more details are ava...
No this is a misunderstanding. The requirement is:
Do not show character and value for characters of property pres...
Andreas Müller
01:19 PM feature request #8759: Description aggregation : suppress state present when more details are ava...
This should be handled already during the aggregation process. Andreas Kohlbecker
01:18 PM feature request #8759 (Resolved): Description aggregation : suppress state present when more deta...
In character trees frequently a parent character is being used to determine the presence or absence of subordinate ch... Andreas Kohlbecker
03:17 PM bug #8718 (Resolved): polytomousKey page: better handling of invalid uuids
Andreas Müller wrote:
> Instead of saying "page not found" can't we do the same as for taxa and say "xxx does not ex...
Andreas Kohlbecker
02:49 PM bug #8718 (Feedback): polytomousKey page: better handling of invalid uuids
Instead of saying "page not found" can't we do the same as for taxa and say "xxx does not exist". This sounds a bit m... Andreas Müller
02:41 PM bug #8718: polytomousKey page: better handling of invalid uuids
done
please review I you have time to:
http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/n...
Andreas Kohlbecker
01:58 PM bug #8718 (Resolved): polytomousKey page: better handling of invalid uuids
Applied in changeset commit:cdm-dataportal|4d9660ef5a78a9d741385db13549716889ceabb1. Andreas Kohlbecker
02:40 PM Revision de017852 (cdm-dataportal): fix #8718 humane error message in case the page does not exis...
Andreas Kohlbecker
02:24 PM feature request #8756 (Resolved): Refresh button for structure tree and property tree in Characte...
Applied in changeset commit:taxeditor|a0f4664b4135fac8549cf6a0b0836acb248abbb8. Patrick Plitzner
01:46 PM feature request #8756 (In Progress): Refresh button for structure tree and property tree in Chara...
Patrick Plitzner
02:23 PM Revision ba2f2883 (taxeditor): ref #8744 Correctly initialize cdmEntitySession for character editor
Patrick Plitzner
02:13 PM feature request #8761 (New): Remove TaxonName_NomenclaturalStatus MN table
As a status belongs always to exactly 1 name an MN table is not necessary Andreas Müller
02:13 PM Revision a0f4664b (taxeditor): fix #8756 Add Refresh button for Character Editor
Patrick Plitzner
01:58 PM Revision 4d9660ef (cdm-dataportal): fix #8718 humane error message in case the page does not exis...
Andreas Kohlbecker
01:41 PM bug #8760 (New): No provider für Molecular Data
Hallo,
mir ist auf http://test.e-taxonomy.eu/dataportal/preview/campanulaceae/cdm_dataportal/taxon/48249487-e921...
Patrick Plitzner
01:10 PM feature request #8758 (Closed): Aggregated Descriptions: order states by frequency
Most frequent states should be displayed first.
Another option to order the stated would be the term order as defi...
Andreas Kohlbecker
10:36 AM bug #8757 (Resolved): ArrayIndexOutOfBoundsException in term combo
Katja Luther
10:34 AM bug #8757 (Closed): ArrayIndexOutOfBoundsException in term combo
… im Details View, beim Versuch Leaf length über Facts View einzugeben. Leaf length hat recommendedMeasurementUnit „... Katja Luther
09:54 AM Revision 8af14eec (taxeditor): fix IndexOutOfBoundsException in TermComboElement
Katja Luther

12/10/2019

11:56 PM feature request #8028: DISCUSS better representation of web app media in the image gallery
AM:
Grundsätzlich sollten wir zwischen wirklichen Media und ExternalLinks unterscheiden. Das sind 2 Dinge, Media k...
Andreas Müller
05:25 PM feature request #8028 (New): DISCUSS better representation of web app media in the image gallery
Andreas Kohlbecker
05:24 PM feature request #8028: DISCUSS better representation of web app media in the image gallery
Alternative suggestion from Walter [06.12.19]:
Am wichtigsten wäre es mir, den grauen Kasten loszuwerden (das find...
Andreas Kohlbecker
06:57 PM feature request #8755: Show all structure/property trees in CharacterEditor
We tested intensively today during the integrated taxonomy course. It worked fine.
2 questions:
1) with the cu...
Andreas Müller
06:57 PM feature request #8756: Refresh button for structure tree and property tree in Character Editor
I assigned this to KL for now. PP if you think it is a no-brainer and you can immediately do it please feel free to t... Andreas Müller
06:55 PM feature request #8756 (Resolved): Refresh button for structure tree and property tree in Characte...
copied from #8755, explanations see there Andreas Müller
05:36 PM task #8741 (Closed): Create test for MapServices to test if they support https
done, see https://dev.e-taxonomy.eu/gitweb/edit-map-service-test.git/commit/9603e65de34cde146ba1020f0ed5e1290bf558c7 Andreas Kohlbecker
11:00 AM bug #8747: Matrix Editor: Can not unset categorical data
Sorry, but I consider the priority of this ticket here as being much higher than the priority of #8755. #8755 does no... Andreas Kohlbecker
09:59 AM bug #8747 (New): Matrix Editor: Can not unset categorical data
This should be done sooner or later but it has not highest priority so not a task for PP anymore. Change user and ver... Andreas Müller
09:15 AM bug #8747 (In Progress): Matrix Editor: Can not unset categorical data
Please change it so that checkbox state is toggled each time when being clicked. Andreas Kohlbecker
10:51 AM Revision dce889fe (taxeditor): case insensitive sorting in vocabulary combo
Katja Luther

12/09/2019

12:13 AM Revision e153cc8e (cdmlib): ref #8679 handle null values in missing values correctly
Andreas Müller
10:43 PM Revision 9d08bc87 (cdmlib): cleanup
Andreas Müller
09:55 PM Revision 151c9262 (cdmlib): ref #8679 fix structured desc aggregation for missing values and min/...
Andreas Müller
06:16 PM feature request #8755 (Resolved): Show all structure/property trees in CharacterEditor
Applied in changeset commit:taxeditor|6803fca4a0c8065b5c4227de7ee853b7969e5332. Patrick Plitzner
03:55 PM feature request #8755 (Closed): Show all structure/property trees in CharacterEditor
Currently you can only choose one tree for each term type Patrick Plitzner
06:16 PM Revision 6803fca4 (taxeditor): fix #8755 Show all structure/property trees in CharacterEditor
Patrick Plitzner
06:13 PM Revision f2816950 (cdmlib): cleanup
Andreas Müller
05:17 PM Revision 244c2806 (cdmlib-apps): ref #2717 adapt export for DisplayName, WebShowName etc. to E+M ...
Andreas Müller
05:07 PM Revision 509d3795 (cdmlib-apps): adapt E+M activator to new AggregationMode class
Andreas Müller
05:07 PM Revision 3556e662 (cdmlib-apps): cleanup
Andreas Müller
05:06 PM Revision ce2d36db (cdmlib-apps): add Serbia + Kosovo, remove NorthAmerica from PESI areas
Andreas Müller
05:02 PM Revision e16a65b4 (cdmlib): add comment that volumes with dot are maybe handled incorrectly
Andreas Müller
05:02 PM Revision 3ebca137 (cdmlib): cleanup
Andreas Müller
05:01 PM Revision 1d498af3 (cdmlib): add Ko and Se to BerlinModelTransformer for PESI
Andreas Müller
04:20 PM Revision 463a9393 (cdmlib): remove duplicated call of getTitleWithoutYearAndAuthorGeneric
Andreas Müller
04:19 PM Revision 7ea3e253 (cdmlib): cleanup
Andreas Müller
04:08 PM bug #8663 (Feedback): LIE when trying to save a tree node
I cannot reproduce this. I also tested saving some changes for this character tree on rem_conf_am.
If you cannot r...
Patrick Plitzner
01:38 PM bug #8663 (New): LIE when trying to save a tree node
No this is not a duplicate. It looks like it happened in the term tree editor, not in the Character editor. Andreas Müller
12:57 PM bug #8663 (In Progress): LIE when trying to save a tree node
Is this a duplicate for 8744? Andreas Müller
04:03 PM bug #8747 (Feedback): Matrix Editor: Can not unset categorical data
Andreas Kohlbecker wrote:
> I don't consider this as user friendly. Is this default behavior of the nattable?
>
>...
Patrick Plitzner
03:27 PM bug #8748 (Resolved): Supported state vocabularies should be ordered
This should be fixed now, please review. Katja Luther
12:51 PM bug #8748: Supported state vocabularies should be ordered
This is handled by KL as far as I know. Andreas Müller
03:21 PM Revision edca2436 (taxeditor): ref #8748: fix filter, change combo from ccombo to combo
Katja Luther
01:59 PM bug #8746: Multiple representations problem on saving Matrix Editor
Is this reproducable? Otherwise I would close this ticket because MRE occurr everywhere from time to time. Andreas Müller
01:30 PM feature request #8656 (Resolved): [DISCUSS] Should only characters be allowed for DescriptiveData...
Andreas Müller
01:19 PM bug #7990: Moving a feature via d&d does not make the Feature Tree Editor dirty
In general the feature tree editor should persist data only after pushing save and therefore needs to be refactored. ... Andreas Müller
01:03 PM bug #7994: Implement allowDuplicates for term trees in TaxEditor
There is a flag now for term trees which defines if duplicates are allowed: "allowDuplicates"
But the according fu...
Andreas Müller
12:42 PM feature request #7701 (Resolved): Add link to typified name on specimen page of data portal
So I put this to resolved in current milestone so it can be reviewed. Please change back if not yet solved. Andreas Müller
12:40 PM feature request #7701: Add link to typified name on specimen page of data portal
maybe this is already solved Katja Luther

12/07/2019

06:11 PM bug #8312 (In Progress): Test, fix, improve and run Transmission engine for E+M
Andreas Müller
06:07 PM feature request #6352 (Duplicate): Add Transmission Engine trigger to Admin menu
Andreas Müller
09:57 AM Revision ff19d87a (cdmlib): ref #8679 add done() to monitoring if unexpected exception occurred.
Andreas Müller
09:57 AM Revision 49c84c83 (cdmlib): add getNameCache(name, tagRules) to INameCacheStrategy
Andreas Müller

12/06/2019

10:04 PM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
Based on the dump and situation in #8752:
* deleted both descriptive datasets
* delete the Character threes (for ...
Andreas Kohlbecker
09:53 PM bug #8753 (Closed): EagerLoadingException on opening Character Tree Editor after deleting all Des...
Based on the dump and situation in #8752:
* deleted both descriptive datasets
* Immediately open the Character T...
Andreas Kohlbecker
09:44 PM bug #8752 (Worksforme): Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset
It seems as if the DescriptiveDataset has been corrupted somehow.
1. I removed all "specimens" from the matrix at ...
Andreas Kohlbecker
06:19 PM bug #8747 (New): Matrix Editor: Can not unset categorical data
I don't consider this as user friendly. Is this default behavior of the nattable?
Since there are check boxes in t...
Andreas Kohlbecker
12:21 PM bug #8747 (Resolved): Matrix Editor: Can not unset categorical data
You have to hold CTRL and select the chosen state again to de-select. Patrick Plitzner
06:16 PM bug #8746: Multiple representations problem on saving Matrix Editor
Patrick Plitzner wrote:
> Did you just enter categorical and quantitative data?
> Did you only enter data for this...
Andreas Kohlbecker
12:23 PM bug #8746 (Feedback): Multiple representations problem on saving Matrix Editor
Did you just enter categorical and quantitative data?
Did you only enter data for this one specimen?
Did you edit a...
Patrick Plitzner
04:03 PM Revision 66de5a6c (taxeditor): ref #8450 Fix refresh after changes
Patrick Plitzner
03:44 PM bug #8744 (Resolved): LazyInitializationException (LIE) saving the Character Editor
This seems to be fixed now by using merge(). We still have to have a look at TermTreeEditor which currently still use... Patrick Plitzner
02:05 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
hmm, it does not really seem to be the problem, but I found that there seems no session to be defined
![](picture1...
Andreas Müller
01:25 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
After changing the users such that only 1 user was attached to all data like TermRelation, DefinedTermBase, TermVocab... Andreas Müller
01:13 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
We need to test the behavior if data is edited with different users, it seems like at least one user (former user - u... Andreas Müller
01:11 PM bug #8744: LazyInitializationException (LIE) saving the Character Editor
I do not understand how we can have a LIE within a save. With save all objects should be within the session by Merge.... Andreas Müller
03:42 PM bug #8751 (New): Replace saveOrUpdate() in AbstractTermTreeEditor
Unexpectedly saveOrUpdate() is used instead of merge().
Currently, if you change to merge() an exception is thrown...
Patrick Plitzner
03:36 PM Revision 64be1450 (taxeditor): ref #8744 Use merge in CharacterEditor.save()
Patrick Plitzner
02:18 PM Revision 1cfa8b28 (taxeditor): update layer doc
Patrick Plitzner
01:58 PM Revision fe281c15 (taxeditor): ws for biocase provider moved
Katja Luther
01:41 PM feature request #8750 (New): Write tests for service layer methods getting the specimens for an a...
The service method for getting all specimen for an associated taxon needs tests:
The method should return all spec...
Katja Luther
01:27 PM Revision b9f38c00 (taxeditor): ref #8749: sort elements of vocabulary combo
Katja Luther
01:18 PM bug #8748 (In Progress): Supported state vocabularies should be ordered
Now there is a filter for the combo boxes. Katja Luther
11:17 AM bug #8748 (Closed): Supported state vocabularies should be ordered
For characters there is a long list of state vocabularies now. Therefore they are difficult to find in the dropdown. ... Andreas Müller
01:17 PM feature request #8749 (Duplicate): Add proposalProvider to AbstractComboElement
Katja Luther
01:15 PM feature request #8749 (Closed): Add proposalProvider to AbstractComboElement
To provide the filter to all combo elements add the proposalProvider to the AbstractComboElement.
This is used for...
Katja Luther
01:16 PM Revision a5a9ec69 (taxeditor): ref #8749: add proposalProvider to combo elements
Katja Luther
11:59 AM feature request #7071: Reenable restore functionality
Idea:
* After CdmStore has connected invoke "open Part" command on saved editors.
* EditorInput/UUID can be sav...
Patrick Plitzner
09:20 AM Revision cbf13384 (taxeditor): ref #8677: rank combo contains rank of selected taxon
Katja Luther

12/05/2019

05:20 PM bug #8747 (New): Matrix Editor: Can not unset categorical data
Once categorical data state has been set in a cell this cell can not be made blank Andreas Kohlbecker
05:01 PM bug #8744 (In Progress): LazyInitializationException (LIE) saving the Character Editor
Patrick Plitzner
04:59 PM bug #8744 (Resolved): LazyInitializationException (LIE) saving the Character Editor
Applied in changeset commit:taxeditor|5fa6172961481d22d6282abc10b4c350fe1c8bce. Patrick Plitzner
04:58 PM Revision 5fa61729 (taxeditor): fix #8744 Fix LIE while saving character editor
Patrick Plitzner
04:38 PM bug #8746 (Rejected): Multiple representations problem on saving Matrix Editor

we did several edits in the matrix for multiple specimens.
Last edit was setting the the state for leave architect...
Andreas Kohlbecker
04:33 PM bug #8745 (Resolved): Type designations of synonyms missing on specimen page
please review Katja Luther
04:31 PM bug #8745 (Closed): Type designations of synonyms missing on specimen page
Type designations of synonyms are missing in the compressed specimen page.
mail NK:
Es geht darum, dass von den...
Katja Luther
04:30 PM Revision ca25238c (cdmlib): fix missing type designations of synonyms on specimen page
Katja Luther
04:26 PM Revision 64c04c7d (taxeditor): ref #8450 Fix refresh of character tree after adding characters
Patrick Plitzner
04:25 PM Revision a494d916 (cdm-dataportal): add class name to type designation exception
Katja Luther
04:23 PM Revision 5fedf5d5 (taxeditor): ref #8450 Do not show sec reference in matrix
Patrick Plitzner
02:57 PM Revision 3c162754 (cdmlib): ref #8679 top level error handling and renaming aggregation methods
Andreas Müller
02:36 PM Revision 851664fd (cdmlib): ref #8679 try to fix progress tasks and percentage not showing up
Andreas Müller
02:35 PM Revision 9cabea44 (cdmlib): cleanup
Andreas Müller
02:20 PM feature request #8677 (In Progress): Add distribution aggregation to set subtree menu
Open issues:
* ~~highest rank should include the rank of the selected taxon~~
* ~~lowest rank should inlcude th...
Andreas Müller
02:10 PM Revision e6b6fbe5 (taxeditor): ref #8677 minor tooltip changes
Andreas Müller
08:20 AM Revision c6883acf (cdmlib): ref #8679 Add test for incomplete categorical data
pplitzner

12/04/2019

10:40 PM bug #6629 (Closed): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to high...
NK: Ist jetzt OK. Andreas Müller
02:34 PM bug #6629 (Resolved): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to hi...
For Acanthoscephalus, Heteroderis, Crepis and Lagoseriopsis the aggregation seems to work now. For Cichorium intybus ... Andreas Müller
06:57 PM bug #8744 (Closed): LazyInitializationException (LIE) saving the Character Editor
saving the Character Editor after changing the Character Node details causes an LazyInitializationException every tim... Andreas Kohlbecker
05:58 PM Revision 475575b3 (cdmlib): Fix gcTime calculation
Patrick Plitzner
05:58 PM Revision 2a71dd1c (cdmlib): ref #8679 Add cancel points for aggregation progress monitor
Patrick Plitzner
05:58 PM Revision 80c4e54e (cdmlib): ref #8679 Filter out cloned specimen descriptions
Patrick Plitzner
05:29 PM bug #8743 (New): BioCASE specimen import: ignore invalid biocase accesspoint urls
This is especially important for the DNA import. If an URL is specified which is not pointing to a BioCase provider t... Andreas Kohlbecker
02:51 PM Revision 724c463a (taxeditor): ref #8677: correct enabling and disabling of elements
Katja Luther
02:50 PM feature request #8742 (New): Allow deleting vocabularies
Currently it is not possible to delete a vocabulary if it contains terms.
With OWL import (additivity) it is now pos...
Andreas Müller
02:39 PM Revision 5373a0e9 (taxeditor): ref #8677: fix wrong type
Katja Luther
02:37 PM Revision 80e27bc2 (cdmlib): fix compile error
Andreas Müller
02:28 PM Revision c274b9cc (taxeditor): ref #8677: smaller issues
Katja Luther
02:18 PM Revision ef976e5a (taxeditor): ref #8677: set default selections, sort combos and other smaller i...
Katja Luther
02:07 PM Revision 19739293 (cdmlib): ref #8679 rename supports fields and make public
Andreas Müller
02:01 PM Revision aaafab4d (cdmlib): make misappliedName uuid public (needed for PESI)
Andreas Müller
02:01 PM Revision 47992818 (cdmlib): ref #8679 let AggregationMode and AggregationSourceMode implement IKe...
Andreas Müller
01:37 PM Revision de4502ef (taxeditor): ref #8679 Adapt to cdmlib changes
Patrick Plitzner
01:20 PM Revision 5ee7595c (cdmlib): ref #8679 move aggregation modes to own class file
Andreas Müller
11:48 AM Revision 25a98c3f (cdmlib): ref #8677: getNamedAreaDTO
Katja Luther
11:47 AM Revision 629035f4 (cdmlib): ref #8677: getNamedAreaDTO
Katja Luther
11:18 AM Revision 5bafde13 (cdmlib): ref #8450 Fix quantitative data + add test
Patrick Plitzner
10:12 AM task #8741 (Closed): Create test for MapServices to test if they support https
This especially tests if the existing certificate is still valid. Andreas Müller
09:53 AM Revision 70946cb4 (taxeditor): ref #8677: layout and labeling in aggregation config wizard
Katja Luther
09:38 AM Revision 882f3d24 (cdmlib): add left join for level in ternmDto sql query
Katja Luther
09:38 AM Revision 3fb760db (cdmlib): fix cdmlight export test
Katja Luther

12/03/2019

06:37 PM feature request #8721: Use webservice to get all biocase provider listed by gbif
I agree with the above. Maybe the title is enough. Users usually recognize a collection by its title not it's service... Andreas Müller
06:24 PM feature request #8721: Use webservice to get all biocase provider listed by gbif
The access points should be searchable also by the accesspoint title, For the BGBM Herbarium the webservice lists th... Andreas Kohlbecker
06:32 PM feature request #8740 (New): BioCASE specimen import: implement data set filter in specimen impor...
once an access point has been selected in the fist step it should be possible to limit the search to a specific data ... Andreas Kohlbecker
05:31 PM Revision 98fb83d7 (cdmlib): ref #8450 Set max to min if max null and vica versa
- static method Patrick Plitzner
05:28 PM Revision 693b87f5 (cdmlib): ref #8450 Set max to min if max null and vica versa
Patrick Plitzner
04:35 PM feature request #8657: Order description element in portal according to CharacterTree
Can you provide an example url? Andreas Müller
12:14 PM feature request #8657: Order description element in portal according to CharacterTree
Assignin to you Andreas M.
But maybe also Andreas K. needs to look at the code
Patrick Plitzner
04:34 PM Revision 2fc6f4c0 (cdmlib): set monitor methods to protected in DescriptionAggregationBase
Andreas Müller
04:28 PM Revision a4ca6fce (cdmlib): ref #8679 Add sources to aggregated description
- within taxon: specimen description
- parent taxon: aggregated taxon description
Patrick Plitzner
03:15 PM feature request #8713 (Resolved): Improve structured descriptive data aggregation
At least tests exist now and also base class algorithm is used. Can you please review and put open issues into a foll... Andreas Müller
02:20 PM Revision 20245cca (cdm-dataportal): ref #8595 Do not filter description sources by class
Patrick Plitzner
02:15 PM bug #8670: Unwanted distribution aggregation/display on 2 levels
Auch hier bitte einen letzten Check ob noch was offen ist.
Anschließend können wir das Ticket schließen.
Andreas Müller
02:14 PM bug #4134: Transmissionengine Distribution seems to miss distributions for higher Taxa
I think this is fully fixed with the new implementation of the transmission engine (which allows the user to decide t... Andreas Müller
02:08 PM feature request #5176 (Closed): TransmissionEngineDistribution can run on selected taxa
This should be fully fixed. As it has been used already and also a TaxEditor UI for using it has been developped I cl... Andreas Müller
01:49 PM feature request #8472 (Closed): Transmission engine for distribution aggregation needs to be adap...
Andreas Müller
01:48 PM Revision 412b2eee (cdmlib): ref #8472 remove final links to old MarkerType.COMPUTED handling
Andreas Müller
01:41 PM task #8468 (Closed): Remove old InapplicableIf tables
Andreas Müller
01:40 PM bug #8738 (Closed): CdmLink.startPos and .endPos should allow Null
Andreas Müller
01:40 PM bug #8702 (Closed): Remove Not null constraint for uuid in AUD tables
Andreas Müller
01:09 PM Revision 03d98738 (taxeditor): ref #8738 , ref #8702 , ref #8468 update TaxEditor test DB
Andreas Müller
01:09 PM Revision bcac7f33 (taxeditor): minor
Andreas Müller
01:07 PM Revision 86493549 (cdm-vaadin): ref #8738 , ref #8702 , ref #8468 update vaadin test DB
Andreas Müller
01:06 PM Revision b9b25534 (cdmlib): ref #8738 , ref #8702 , ref #8468 last changes for 5.12 update script
Andreas Müller
12:30 PM Revision 06d7ad52 (cdm-dataportal): ref #8595 Fix potential null pointer
Patrick Plitzner
12:21 PM feature request #8714: description page: Show multiple datasets per description as list of links
To review you would have to manually add a description to multiple datasets in the database. There is no test data li... Patrick Plitzner
12:19 PM feature request #8595: Create description detail page
created new ticket for remaining issues and discussion -> #8739
Patrick Plitzner
12:17 PM bug #8739 (Closed): remaining issues for description detail page
Copied from #8595
* Evtl. will man auf aggr. Description von höheren Taxa nicht die Specimen als Quellen anzeigen,...
Patrick Plitzner
09:43 AM Revision dacb449b (cdmlib-apps): minor
Andreas Müller
09:39 AM Revision c64d9f63 (taxeditor): ref #8450 Remove aggregation/summary row
Patrick Plitzner
09:26 AM Revision ab5959ce (taxeditor): ref #8450 Remove charts and tooltip button
Patrick Plitzner
09:15 AM Revision 44e7eed6 (taxeditor): ref #8450 Disable re-ordering of columns
Patrick Plitzner
09:14 AM Revision b533829a (taxeditor): ref #8450 Fix freeze column index
Patrick Plitzner

12/02/2019

05:32 PM Revision b6143fd1 (cdmlib): cleanup
Andreas Müller
05:24 PM Revision 9f6ce960 (cdmlib): fix potential NPE when retrieving identifiers via type == null
Andreas Müller
04:56 PM Revision 0d1a8c63 (cdmlib): cleanup
Andreas Müller
04:53 PM Revision 1cbe14bb (cdmlib): cleanup
Andreas Müller
04:46 PM Revision 86c08d73 (taxeditor): Add tooltip to TermSearch menu item
Patrick Plitzner
04:35 PM Revision 287ae15a (taxeditor): ref #8450 Fix matrix taxon node hierarchy
Patrick Plitzner
03:56 PM Revision 7dd0d600 (cdmlib): ref #8766 Fix potential ArrayIndexOutOfBoundsException
Patrick Plitzner
03:43 PM Revision 57b6d909 (cdmlib): ref #8468 replace Inapplicable tables in ClearDB files (remaining)
Andreas Müller
03:39 PM Revision f7a5f872 (cdmlib): ref #8766 remove a.level from TermDto SELECT statement
Patrick Plitzner
03:24 PM Revision dfbe0f52 (cdmlib): ref #8468 replace Inapplicable tables in ClearDB files
Andreas Müller
03:05 PM Revision 2fcd811a (cdmlib): ref #8468 further fix test schema
Andreas Müller
02:19 PM Revision 32d3420e (cdmlib): ref #8468 fix model cache and test sql
Andreas Müller
01:33 PM Revision 69b55e11 (cdmlib): ref #8766: add level to TermDto
Katja Luther
01:29 PM Revision 07b9b244 (taxeditor): ref #8679 Set taxon node filter and no batch size adaption
Patrick Plitzner
01:28 PM Revision 34726589 (cdmlib): ref #8679 Add initTransaction() super method
- hook for initializing object when a new transaction starts Patrick Plitzner
01:28 PM Revision b1b9414c (cdmlib): typo
Patrick Plitzner
01:27 PM Revision 26024c71 (taxeditor): ref #8677: layout issues - continue
Katja Luther
01:21 PM Revision f67d22e7 (taxeditor): ref #8677: layout issues
Katja Luther
12:54 PM Revision b58f9986 (cdmlib): minor
Andreas Müller
12:54 PM Revision 9e5a8c54 (cdmlib): ref #8468 fix JAXB for removed inapplicableIF
Andreas Müller
12:31 PM feature request #8433 (Duplicate): Disallow user names with whitespace
This is a duplicate for #8454 and has been fixed in CDM UML 5.8 Andreas Müller
12:26 PM task #8468 (Resolved): Remove old InapplicableIf tables
Applied in changeset commit:cdmlib|73391892ccf6af23d1f83357e460ea9b55df4e2d. Andreas Müller
12:26 PM Revision a2c8f975 (cdmlib): ref #8468 remove old attributes from TermNode
Andreas Müller
12:25 PM Revision 65397e52 (cdmlib): rename TableDroper -> TableDropper
Andreas Müller
12:23 PM Revision 73391892 (cdmlib): fix #8468
Andreas Müller
12:23 PM Revision cdaeac9a (cdmlib): ref #8738 , ref #8702 add update script to remove null constraints fr...
Andreas Müller
12:12 PM bug #8702 (Resolved): Remove Not null constraint for uuid in AUD tables
Andreas Müller
12:12 PM bug #8738 (Resolved): CdmLink.startPos and .endPos should allow Null
Andreas Müller
10:55 AM bug #8738 (Closed): CdmLink.startPos and .endPos should allow Null
The table was IntextReference before. After using it for class CdmLinkSource also the originally NOT NULL columns mus... Andreas Müller
12:11 PM Revision dc5a41f6 (cdmlib): ref #8738 , ref #8702 add update script to remove null constraints fr...
Andreas Müller
12:09 PM Revision 38f1e0aa (cdmlib): cleanup
Andreas Müller
12:01 PM Revision c3193e02 (cdmlib): rename SchemaUpdater v5.x packages
Andreas Müller
11:32 AM bug #8737 (Resolved): delete taxon included in two classifications deletes taxonname
Now there is also the possibility to set the taxonnode configurator to deletetaxon = false. This was missing in the d... Katja Luther
09:42 AM bug #8737: delete taxon included in two classifications deletes taxonname
please review. Katja Luther
09:35 AM bug #8737 (Closed): delete taxon included in two classifications deletes taxonname
when deleting a taxon used in two classifications, the taxon still exist, but the name is deleted. This is because of... Katja Luther
11:28 AM Revision a66ea40a (taxeditor): ref #8737: add possibility to delete taxonnode wizard for only del...
Katja Luther
10:35 AM bug #8733: Descriptive data set: Specimens of a newly added taxon are not listed in Select Specim...
This ticket is complex. In the ticket description is not written HOW the taxon is added. In general the underlying se... Andreas Müller
08:24 AM bug #8733 (Feedback): Descriptive data set: Specimens of a newly added taxon are not listed in Se...
Currently the specimens listed in the specimen selection dialog are cached after the first time opening the dialog be... Patrick Plitzner
08:40 AM feature request #8665 (Resolved): Rename "New" to "New Tree" in Term Tree editors
Applied in changeset commit:taxeditor|210af90ccae0c45e1234bdb8fe216285293546c6. Patrick Plitzner
08:40 AM Revision 210af90c (taxeditor): fix #8665 Show human readable term type in new tree string
Patrick Plitzner
08:37 AM bug #8732 (Duplicate): Descriptive Data Set Navigator: label not refreshed after change in Descri...
This is already solved for release 5.12 with #8661
Please validate with the current nightly build.
Patrick Plitzner
08:15 AM Revision 6f4db5c3 (taxeditor): remove system.out
Patrick Plitzner
07:40 AM Revision 9a2d6065 (cdmlib): ref #8679 Set batchMinFreeHeap in test setup
Patrick Plitzner

11/29/2019

05:17 PM bug #8736 (Closed): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
To reproduce:
* use database: caryophyllales_spp (cactaceae)
* create new Descriptive Dataset (son specimens so f...
Andreas Kohlbecker
04:27 PM Revision 73f2833f (cdmlib-apps): cleanup
Andreas Müller
04:20 PM Revision b4e7eccb (cdmlib-apps): #3945 move some PESI classes to new packages and minor issues
Andreas Müller
04:09 PM task #7976 (In Progress): [PESI][ERMS] Erms taxon import
Andreas Müller
04:09 PM task #8509 (In Progress): [PESI][ERMS] Export ERMS data to PESI
Andreas Müller
04:06 PM task #8577 (In Progress): [PESI][E+M] Validation for E+M export
Andreas Müller
03:35 PM bug #8735 (Duplicate): Character Node Editor: allow line breaks at slashes in structure represent...

The line wrapping does not work for long structure representation. Breaks only happen where the term labels contain...
Andreas Kohlbecker
01:48 PM Revision 45ca2f16 (cdmlib): ref #8679 Replace existing description elements in re-aggregation
-add test for re-aggregation Patrick Plitzner
12:58 PM Revision 91f2c632 (cdmlib): ref #8679 Load dataset in each session
Patrick Plitzner
11:28 AM task #8734 (Closed): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
Andreas Müller
10:34 AM task #8734 (In Progress): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
SQL to use
~~~
UPDATE DescriptionElementBase deb
INNER JOIN DefinedTermBase a ON deb.area_id = a.id
INNER JOIN ...
Andreas Müller
10:33 AM task #8734 (Closed): Update distributions from TDWG-L4 to TDWG-L3 where L4=L3
This will shorten the textuell representations of distribution data in the data portal Andreas Müller
01:49 AM bug #8731 (Resolved): BioCase Specimenimport: empty result list and SWTException:Invalid thread a...
now it works again with the nightly build. Katja Luther
01:44 AM Revision c11b0cd2 (taxeditor): data cleaning
Katja Luther
01:30 AM Revision 7b017c3e (taxeditor): test other exception handling
Katja Luther
01:07 AM Revision 947597cb (cdmlib): fix test
Katja Luther

11/28/2019

12:47 AM bug #8731 (In Progress): BioCase Specimenimport: empty result list and SWTException:Invalid threa...
This is strange, I can not reproduce this with an editor started from the workspace, also when using the actual git d... Katja Luther
03:45 PM bug #8731: BioCase Specimenimport: empty result list and SWTException:Invalid thread access in se...
An import of specimens is not possible wit the current code base in the development branch. Andreas Kohlbecker
03:40 PM bug #8731 (Closed): BioCase Specimenimport: empty result list and SWTException:Invalid thread acc...
I am not sure about the timing of the situation in which this exception occurred.
I was searching the `http://ww3....
Andreas Kohlbecker
12:32 AM Revision 5adfd05a (taxeditor): ref #8731: minor
Katja Luther
12:11 AM Revision 9b954e94 (cdmlib): add check for taxon and name in test
Katja Luther
12:03 AM Revision 25f62069 (cdmlib): fix delete problems of taxa used in multiple classifications
Katja Luther
06:57 PM bug #8733 (Closed): Descriptive data set: Specimens of a newly added taxon are not listed in Sele...
to reproduce
1. create Descriptive data set in caryophyllales_spp
* adding *Rhipsalis pilocarpa* by drag and dro...
Andreas Kohlbecker
06:33 PM bug #8732 (Duplicate): Descriptive Data Set Navigator: label not refreshed after change in Descri...
just exactly what is written in the subject.
Andreas Kohlbecker
03:55 PM Revision ec07174a (cdmlib-apps): fix E+M Activator
Andreas Müller
03:54 PM Revision 46ae6d5a (taxeditor): ref #8679 Set taxon node filter and aggregation mode
Patrick Plitzner
03:54 PM Revision 7079d656 (cdmlib-apps): cleanup
Andreas Müller
03:53 PM Revision 456a8f57 (taxeditor): Fix potential NPE
Patrick Plitzner
03:52 PM Revision 2adab869 (cdmlib-apps): update BgbmInstancesUpdater
Andreas Müller
03:31 PM Revision 2bc176df (cdmlib): Enhance toString()
Patrick Plitzner
03:31 PM Revision 33373464 (cdmlib): ref #8679 Remove usage of apache commons math
Patrick Plitzner
03:31 PM Revision 2b226eee (cdmlib): ref #8679 Add checks and repairs for valid quantitative data
Patrick Plitzner
03:23 PM bug #8730 (New): OWL Term export progress monitor reports wrong process percentage
The initial percentage is really funny:
![](picture396-1.png)
Andreas Kohlbecker
12:30 PM Revision 4bbc2279 (cdmlib): minor
Andreas Müller
12:29 PM bug #8720: blank perspective after using "Switch User"
the perspective looked like this:
![](picture283-1.png)
today is the first day this is not happening for quite ...
Andreas Kohlbecker
12:05 PM bug #8720: blank perspective after using "Switch User"
I am not sure if I fully understand the problem. When I try to change the user I get the "Taxonomic" perspective but ... Andreas Müller
12:18 PM Revision 54ed2cf2 (cdmlib): ref #8679 Add apache commons math to pom
Patrick Plitzner
12:18 PM Revision 1f0292f8 (cdmlib): ref #8679 Convert to base class aggregation architecture
- convert aggregation of categorical data within taxon Patrick Plitzner
12:18 PM Revision 185e63ee (cdmlib): ref #8679 Convert to base class aggregation architecture
- convert aggregation of quantitative data within taxon Patrick Plitzner
12:18 PM Revision 497e4d3a (cdmlib): add toString()
Patrick Plitzner
12:18 PM Revision 93c52359 (cdmlib): ref #8679 Convert to base class aggregation architecture
- init dataset in preAccumulate
- filter SpecimenDescriptions by data set
Patrick Plitzner
12:18 PM Revision ba1bc425 (cdmlib): Enhance toString()
Patrick Plitzner
12:18 PM Revision 7903d041 (cdmlib): ref #8679 PropertyPath and code cleanup
Patrick Plitzner
12:18 PM Revision 1eb0391c (cdmlib): Add count to toString()
Patrick Plitzner
12:18 PM Revision 5ef244fc (cdmlib): ref #8679 Convert to base class aggregation architecture
- convert aggregation of quantitative data to parent
- convert aggregation of categorical data to parent
Patrick Plitzner
11:51 AM bug #8729: Refresh Taxon Navigator after Specimen import
Seems to be very similar to #8659. So we may think about putting it also to 5.12. Katja, what do you think? Andreas Müller
10:54 AM bug #8729 (New): Refresh Taxon Navigator after Specimen import
After a successful specimen import vi BioCASE Provider the Taxon Navigator is not being refreshed.
New created Clas...
Andreas Kohlbecker
11:03 AM Revision 0e6482c8 (cdmlib): ref #8724 fix JAXB for CdmLink
Andreas Müller
10:04 AM Revision 4cda0d0e (cdmlib): ref #7623: fix NPE
Katja Luther
09:34 AM bug #8728: Specimen import via BioCASE silently fails
Andreas Kohlbecker wrote:
> The problem in one specific case was that the user was not permitted to update a person:...
Andreas Müller
09:26 AM bug #8728: Specimen import via BioCASE silently fails
Next Problem:
~~~
[CREATE] not permitted for 'kurs1' on TaxonNode[uuid:79c3deac-ee1d-4622-91fa-746be0894161', toS...
Andreas Kohlbecker
08:51 AM bug #8728: Specimen import via BioCASE silently fails
The problem in one specific case was that the user was not permitted to update a person:
~~~
[UPDATE] not permitt...
Andreas Kohlbecker

11/27/2019

04:42 PM bug #8728: Specimen import via BioCASE silently fails
As the import works without problems with the `admin` user, it seems as if this is a permission problem.
@Katja: 1...
Andreas Kohlbecker
04:24 PM bug #8728: Specimen import via BioCASE silently fails
this is reproducible
once this error has occurred the taxeditor has to be restarted, otherwise further import atte...
Andreas Kohlbecker
04:15 PM bug #8728 (New): Specimen import via BioCASE silently fails
ABCD Specimen import via BioCASE provider silently fails
Logged in as user with GAs: `Editor` + `TAXONNODE.[CREATE...
Andreas Kohlbecker
03:39 PM EDIT Platform Etablierung task #8727 (In Progress): Test Workshop workflow
Andreas Kohlbecker
03:21 PM EDIT Platform Etablierung task #8727 (Closed): Test Workshop workflow
**Use the simple editor user accounts: kurs1..5**
The section of taxa to test the workflow with is based in the ...
Andreas Kohlbecker
03:00 PM Revision 700aa970 (cdmlib): Fix potential NPE
Patrick Plitzner
02:58 PM Revision 5a36818d (cdmlib): ref #8724 handle taxon in CdmLinkSource
Andreas Müller
02:39 PM feature request #8686: Support CdmLink sources in bibliography
Further more there is a discussion if links to taxa should be direct links from the description(element) to the taxon... Andreas Müller
02:38 PM feature request #8686: Support CdmLink sources in bibliography
Support for link to taxa has been added in #8724. So we need to check or implement that also links to taxa are handle... Andreas Müller
02:36 PM feature request #8724 (Resolved): Allow OriginalSource to link to Taxon
Andreas Müller
02:25 PM feature request #8724 (Closed): Allow OriginalSource to link to Taxon
When aggregating (or moving) data one may want to link to the taxon the data originally comes from so we need a possi... Andreas Müller
02:35 PM feature request #8726 (New): the search preference search field should be a list
The preference defining the search field should be not a single value, but a list of fields on which the seach should... Katja Luther
02:34 PM feature request #8725 (Feedback): Add abbreviation to namedArea text field in distribution detail...
Some named areas have the same label therefore it would be nice to show an abbreviation like idInVoc. This should be ... Katja Luther
02:31 PM Revision 35a4f2f3 (cdmlib): ref #8724 add Taxon to ICdmTarget
Andreas Müller
02:31 PM Revision 41e8eb66 (cdmlib): minor
Andreas Müller
02:28 PM Revision de51cd68 (cdmlib): ref #7623: improve gathering agent parsing and query generation
Katja Luther
02:24 PM Revision f084efb4 (taxeditor): ref #8677: layout issues in aggregation dialog
Katja Luther
09:41 AM feature request #8721 (In Progress): Use webservice to get all biocase provider listed by gbif
The prefilled combo and the filtering for entered text is implemented in the specimen dialog now. Katja Luther
09:38 AM Revision 14a62f14 (taxeditor): ref #8721: use webservice to get all biocase provider
Katja Luther
09:18 AM Revision cf6340d0 (cdmlib): ref #8679 Test leaf color
Patrick Plitzner
09:11 AM bug #8723 (New): Distribution detailsview: changing the area removes the state
When changing the area of a distribution the status is not displayed anymore. But the distribution still has the stat... Katja Luther
08:57 AM Revision 5125fb32 (cdmlib): fix NPE in media rights part of biocase import
Katja Luther
07:31 AM Revision eace364b (cdmlib): ref #8679 Add leaf color
pplitzner

11/26/2019

06:41 PM Revision 6b6ebf81 (cdmlib): ref #8679 Refactoring
pplitzner
06:16 PM Revision 4bf5063f (cdmlib): ref #8679 Add specimen to sibling taxon
pplitzner
05:48 PM Revision c14bf2dc (cdmlib): Avoid empty description elements
Patrick Plitzner
05:09 PM Revision 9af9bac7 (taxeditor): ref #8679 adapt TaxEditor to changes in DescriptionAggregation dat...
Andreas Müller
05:06 PM Revision 3177d9fb (taxeditor): ref #8679 adapt TaxEditor to changes in DescriptionAggregation dat...
Andreas Müller
05:01 PM Revision f34d4889 (cdmlib): adapt TestAggregations to areaUuidList (2)
Andreas Müller
04:45 PM Revision 79e76c25 (cdmlib): adapt TestAggregations to areaUuidList
Andreas Müller
04:42 PM Revision ab856113 (cdmlib): update TestAggregations
Andreas Müller
04:39 PM Revision 672c7781 (cdmlib): Avoid empty description elements
Patrick Plitzner
04:32 PM Revision 84b66dd2 (cdmlib): cleanup
Andreas Müller
04:32 PM Revision d22d2ab0 (cdmlib): ref #8679 add tests to StructuredDescriptionAggregation and fix toGra...
Andreas Müller
04:09 PM EDIT Platform Etablierung task #8722 (Closed): Provide Manuals and Dokumentation for the Kurs „Integrated Taxonomy“ WiSe 20...
Documentation needed for the Kurs:
* Matrix-Editor manual - is being prepared ...
* List of user accounts for dem...
Andreas Kohlbecker
03:59 PM EDIT Platform Etablierung task #8712 (Closed): Kurs "Integrated Taxonomy" : prepare setup for workshop computers
Andreas Kohlbecker
03:01 PM Revision 1520e79e (cdmlib): implement another possibility of gathering agent text in abcd (agentT...
Katja Luther
02:53 PM feature request #8721 (Closed): Use webservice to get all biocase provider listed by gbif
For the specimen search it would be nice to have a list of all biocase provider. (Jörg provided us a webservice)
W...
Katja Luther
01:39 PM Revision 515150ac (cdmlib): ref #8677: revert a change of last commit
Katja Luther
12:58 PM Revision ff7c0745 (cdmlib): ref #8677: use changes DistributionAggregationConfig in controller
Katja Luther
12:31 PM Revision 68362152 (taxeditor): ref #8677: add distribution aggregation as long running task to ed...
Katja Luther
12:10 PM Revision 421a91e6 (taxeditor): smaller changes in specimen import view
Katja Luther
12:10 PM Revision 44ba5690 (taxeditor): ref #8677: add distribution aggregation as long running task to ed...
Katja Luther
12:08 PM Revision 26cfae1e (cdmlib): ref #8677: use uuid list instead of namedArea list in DistributionAgg...
Katja Luther
10:43 AM bug #8720 (New): blank perspective after using "Switch User"
When switching the user *General > Switch User* all views and editors are closed, making the perspective blank. After... Andreas Kohlbecker
09:19 AM bug #8719 (Resolved): installation profile 'CDM_Portal' causes Integrity constraint violation: 10...
Applied in changeset commit:cdm-dataportal|56d39875a598bad7e9c7591d5436b0ac63160cae. Andreas Kohlbecker
08:23 AM bug #8719 (Closed): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048...
this bug has been discovered in the process of automatic creation of workshop servers (`server-scripts/workshop-setup... Andreas Kohlbecker
09:19 AM Revision 56d39875 (cdm-dataportal): fix #8719 add missing page and cache values for new blocks in...
Andreas Kohlbecker

11/25/2019

12:01 AM Revision 775d38e1 (cdmlib): ref #8469 avoid merge to singular branches
Andreas Müller
10:54 PM Revision 9415e8dd (cdmlib): cleanup
Andreas Müller
10:53 PM Revision dd864603 (cdmlib): ref #8469 fix min max issue
Andreas Müller
07:32 PM Revision ca93e81e (cdmlib): ref #8469 handle all sub-branch taxa on the level they belong to
Andreas Müller
02:51 PM feature request #8460: Show examples in text field
Try to implement a base functionality.
This is already implemented in taxon search.
Andreas Müller
12:14 PM Revision d1504e5a (cdmlib): ref #8469 first handling of taxa covering all subbranches, but probab...
Andreas Müller
12:14 PM Revision 85d65189 (cdmlib): ref #8469 fix no feature left, prepare taxon covering all subbranches...
Andreas Müller
12:14 PM Revision cde6a65d (cdmlib): cleanup
Andreas Müller
09:00 AM Revision ab96570c (cdmlib): ref #8713 Only add aggregated cat. data if states are present
pplitzner
08:52 AM Revision c8def030 (cdmlib): ref #8450 Only add aggregated quant. data if data present
pplitzner

11/23/2019

09:45 PM Revision 455db50e (cdmlib): ref #8469 fix reuse of reature states filter
Andreas Müller

11/22/2019

10:06 PM Revision ad5bae70 (cdmlib): cleanup
Andreas Müller
10:06 PM Revision ad8460be (cdmlib): ref #8679 preliminary fix failing test for rank aggregation with abse...
Andreas Müller
09:18 PM Revision f6fda820 (cdmlib): ref #8679 remove old COMPUTE marker and move ignore lists to configur...
Andreas Müller
01:27 PM bug #8718: polytomousKey page: better handling of invalid uuids
Patrick, this is relevant for additivity (currently PKs get a new uuid with every generation) so we may think about m... Andreas Müller
12:53 PM bug #8718 (Closed): polytomousKey page: better handling of invalid uuids
ich habe gerade gesehen, dass ein PolyKey, wenn dessen uuid nicht stimmt unschöne Fehler schmeißt:
http://test.e-t...
Andreas Kohlbecker
10:43 AM Revision 1b7e1801 (cdm-dataportal): ref #8595 Fix moved method invocation
Patrick Plitzner
10:41 AM Revision eb89b236 (cdm-dataportal): ref #8595 Fix feature table when no data available
Patrick Plitzner
10:38 AM Revision 5ac909c0 (cdm-dataportal): ref #8595 Only show available datasets label when data available
Patrick Plitzner

11/21/2019

12:12 AM Revision 8e29c4cc (cdmlib): ref #8469 introduce KeyTaxon to allow multiple data and multiple desc...
Andreas Müller
05:19 PM Revision 9b434f6a (cdm-dataportal): ref #8657 moving description methods to description.inc
Andreas Kohlbecker
05:13 PM Revision ab025781 (cdm-dataportal): ref #8686 removing linebreaks from description labels and sim...
Andreas Kohlbecker
04:16 PM task #8716 (Resolved): Configure taxeditor to run with GTK2 in linux
please report if you are having any problems due to the switch to GTK2 Andreas Kohlbecker
04:09 PM task #8716: Configure taxeditor to run with GTK2 in linux
Andreas Kohlbecker wrote:
> as documented in https://wiki.eclipse.org/SWT/Devel/Gtk/GtkVersion the gtk version can b...
Andreas Kohlbecker
04:03 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
as documented in https://wiki.eclipse.org/SWT/Devel/Gtk/GtkVersion the gtk version can be set via
~~~
--launcher...
Andreas Kohlbecker
01:12 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
Der Taxeditor verwendet SWT in der Version 3.105.3.v20170228-0512 (Id: org.eclipse.swt, Version: 3.105.3.v20170228-05... Andreas Kohlbecker
04:15 PM Revision 2279c433 (taxeditor): ref #8716 setting GTK to version 2 in the product launcher configu...
Andreas Kohlbecker
04:13 PM Revision c7e854d5 (cdm-dataportal): ref #8595 Only show feature table when data available
Patrick Plitzner
03:58 PM bug #8717 (New): Improve display of PolytomousKey nodes which have a feature
If a PKN has a feature and not a statement it is repeated multiple times for the child alternatives. A better layout ... Andreas Müller
03:58 PM Revision 9078b9c6 (cdm-dataportal): ref #8686 fixing refactoring bug
Andreas Kohlbecker
03:29 PM bug #8313 (Feedback): Multiple categorical data get deleted when clicked on in Character Matrix
Reopen as it happens again.
How to reproduce: in any categorical cell select 2 states. Leafe the cell (it shows bo...
Andreas Müller
03:21 PM feature request #8714 (Resolved): description page: Show multiple datasets per description as li...
Applied in changeset commit:cdm-dataportal|cf89f7e20f7cbd623d7d373bbf9061003f175179. Patrick Plitzner
11:42 AM feature request #8714 (Resolved): description page: Show multiple datasets per description as li...
A description can have multiple descriptive data sets. These define which features are displayed and in which order.
...
Patrick Plitzner
03:21 PM Revision cf89f7e2 (cdm-dataportal): fix #8714 Show list of available datasets when description ha...
Patrick Plitzner
02:59 PM Revision 185dfa24 (cdmlib): ref #8469 fix multiple dependencies for 1 parent feature issue
Andreas Müller
02:57 PM Revision 92a7f32b (cdmlib): cleanup
Andreas Müller
02:38 PM feature request #8595 (Resolved): Create description detail page
Patrick Plitzner
02:33 PM Revision 16515bdf (cdm-dataportal): ref #8595 Add creation date for cloned source descriptions
Patrick Plitzner
02:32 PM Revision 9705e44e (cdm-dataportal): ref #8657 Avoid null in URL
Patrick Plitzner
02:07 PM Revision 424a2bee (cdmlib): ref #8469 use FeatureState in PolytomousKeyGenerator
Andreas Müller
02:00 PM Revision 1e16407a (cdm-dataportal): ref #8657 Use link icon for descriptions, taxa and specimens
Patrick Plitzner
01:47 PM Revision 875d5c3b (cdm-dataportal): ref #8657 Add taxon information to description detail page
Patrick Plitzner
01:23 PM Revision 7e99b1ac (cdm-dataportal): ref #8657 Remove $linkText parameter
Patrick Plitzner
01:19 PM Revision ea0ae3c7 (cdm-dataportal): ref #8657 Add descriptive data set information to description...
Patrick Plitzner
12:53 PM Revision fe3a5674 (cdm-dataportal): ref #8686 showing CdmLink sources - initial implementation, n...
Andreas Kohlbecker
12:35 PM task #8468 (In Progress): Remove old InapplicableIf tables
Andreas Müller
12:21 PM feature request #8715: Make 'delete Taxonnode' a lonrunning task
Deleting nodes can take some time and results in connection warnings or timeouts. This can be solved by running the d... Katja Luther
12:16 PM feature request #8715 (New): Make 'delete Taxonnode' a lonrunning task
Katja Luther
11:49 AM Revision 51133f9a (cdmlib): ref #8469 filter non-character data
Andreas Müller
11:49 AM Revision 3f678339 (cdmlib): cleanup PolytomousKeyGenerator
Andreas Müller
10:46 AM Revision c0d26dcf (cdmlib): logging of canceled import
Andreas Kohlbecker
10:46 AM Revision b6f0e806 (cdmlib): ref #8673 extend initstrategy by cdmSource for ref #8686
Andreas Kohlbecker
10:32 AM Revision 16a4ba6a (cdmlib): minor
Andreas Müller
10:11 AM Revision e0fce64c (cdmlib): ref #8713 add test class for StructuredDescriptionAggregation
Andreas Müller
08:58 AM Revision 6d2d9cf5 (cdmlib): ref #8713 add test class for StructuredDescriptionAggregation
Andreas Müller
08:19 AM feature request #8713 (Resolved): Improve structured descriptive data aggregation
* Tests
* Remove empty categorical data creation
* use base class algorithm from #8679
* TBC
Andreas Müller
02:26 AM Revision e434b808 (cdmlib): ref #8469 better handling of empty or null CategoricalData
Andreas Müller

11/20/2019

11:54 PM Revision 7e2ee71e (cdmlib): cleanup
Andreas Müller
11:54 PM Revision b73be607 (cdmlib): Some more monitoring during StructuredDescriptionAggregation
Andreas Müller
05:11 PM EDIT Platform Etablierung task #8689: Export Flora of Greece Bupleurum using Cdm2Cdm export
I change Project and milestone as it is mostly data related. Andreas Müller
03:37 PM EDIT Platform Etablierung task #8689 (Closed): Export Flora of Greece Bupleurum using Cdm2Cdm export
The data looks complete and did not cause any errors when opening the taxa in the editor.
I consider this issue as...
Andreas Kohlbecker
05:01 PM feature request #8281 (Closed): Doubtful flag for TaxonNode
E+M data updated
~~~
UPDATE TaxonNode
Set unplaced = 0, doubtful = 1
WHERE unplaced = 1
~~~
also for _AUD
Andreas Müller
05:00 PM feature request #8686 (In Progress): Support CdmLink sources in bibliography
Andreas Kohlbecker
04:59 PM Revision 6527c2f5 (cdm-dataportal): php-doc: return value
Andreas Kohlbecker
04:51 PM EDIT Platform Etablierung task #8711 (Closed): add additivity ontologies to the bupleurum database
completed a dump is stored at edit-test:/root/cdm_test_bupleurum-2019-11-20-001.sql.bz2 Andreas Kohlbecker
01:25 PM EDIT Platform Etablierung task #8711 (Closed): add additivity ontologies to the bupleurum database
the ontology can be downloaded from https://cybertaxonomy.eu/download/data/ontology/additivity/
the characters mus...
Andreas Kohlbecker
04:24 PM feature request #8657 (Resolved): Order description element in portal according to CharacterTree
Patrick Plitzner
02:19 PM Revision c2138217 (taxeditor): german i18n for "Descriptive Data Set"
Patrick Plitzner
02:04 PM Revision e7b6e47a (cdmlib): remove possibility to define aggreaged distributions on description e...
Andreas Müller
02:04 PM Revision 65bc38bc (cdmlib): cleanup
Andreas Müller
02:04 PM Revision b11aa70a (cdmlib): cleanup
Andreas Müller
01:54 PM Revision 8eaf9b31 (cdmlib): abcd import: avoid potential NPE and emtpy authors
Katja Luther
01:32 PM EDIT Platform Etablierung task #8712 (Closed): Kurs "Integrated Taxonomy" : prepare setup for workshop computers

* We will be using the edit-demo-2 server for the Kurs "Integrated Taxonomy"
* prepare database: - **DONE**
...
Andreas Kohlbecker
12:58 PM task #8710: Decide if sub-area Preference and/or status order preference rule
relevant code:
~~~
define('CDM_DISTRIBUTION_FILTER_DEFAULT', serialize(
array(
'filter_rules' => array(
'statu...
Andreas Müller
12:57 PM task #8710: Decide if sub-area Preference and/or status order preference rule
Probably needs discussion with users. Andreas Müller
12:56 PM task #8710 (New): Decide if sub-area Preference and/or status order preference rule
Currently they are switched of in default dataportals.
The setting can be found in the portal settings on the genera...
Andreas Müller
12:47 PM Revision d3ac3ea7 (cdmlib): ref #8657 Extend property path for description init strategy
Patrick Plitzner
12:41 PM Revision b6fb9923 (cdmlib): Revert "ref #8657 Add (remote) service for ordered description elemen...
This reverts commit 7af2c90016dd6215526a732c2d5d8b281c779d0f. Patrick Plitzner
12:40 PM Revision a38c0718 (cdm-dataportal): ref #8657 Retain hierarchy information of description elements
- remove web service for flat ordered list Patrick Plitzner
12:10 PM feature request #8709 (New): Show last selected name in selection dialog of name in source
mail Eckhard v. Raab-Straube:
was auch nett wäre: wenn sich der Editor bei der Auswahl des „name in source“ an die...
Katja Luther
12:05 PM feature request #8708 (New): Sort taxa in distribution editor same as in navigator
mail Eckhard v. Raab-Straube:
Hallo,
zum Verbreitungseditor:
wenn man den Verbreitungseditor von einem höher...
Katja Luther
12:03 PM feature request #8707 (New): Use NAT Table for specimen search result
The search result for the specimen search contains not all informations needed. Therefore it should be shown in a NAT... Katja Luther
11:45 AM feature request #8706 (Resolved): taxeditor error report with timestamps
Wie wäre es wenn wir dem Fehlerprotokoll mal einen Timestamp spendierten? Damit wäre es leichter den Fehler einem bes... Andreas Kohlbecker
01:35 AM bug #8670 (Resolved): Unwanted distribution aggregation/display on 2 levels
Dieses Ticket hat primär mit der Kartenanzeige und nicht mit der Aggregation zu tun. Bei der Kartenanzeige gibt es di... Andreas Müller
 

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