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From 10/09/2018 to 11/07/2018

11/07/2018

05:46 PM bug #7893 (Closed): RegistrationWorkingsetEditor: canceling new name editor leaves the new name b...
Andreas Kohlbecker
04:37 PM bug #7893 (Resolved): RegistrationWorkingsetEditor: canceling new name editor leaves the new name...
Applied in changeset commit:cdm-vaadin|7d55de9a1fde53d044f9ee8cc51c7a702780ee67. Andreas Kohlbecker
04:36 PM bug #7893 (Closed): RegistrationWorkingsetEditor: canceling new name editor leaves the new name b...
Andreas Kohlbecker
05:45 PM bug #7892: RegistrationWorkingsetEditor: LIE creating new name for book section
please test if this is still reproducible Andreas Kohlbecker
05:44 PM bug #7892 (Resolved): RegistrationWorkingsetEditor: LIE creating new name for book section
Applied in changeset commit:cdm-vaadin|3e625af91f82acd7a9d628e09fe0e2f43f8c84c2. Andreas Kohlbecker
04:28 PM bug #7892 (Closed): RegistrationWorkingsetEditor: LIE creating new name for book section
This LazyInitializationException seems to require special circumstances to be reproducible:
1. login as *admin*
...
Andreas Kohlbecker
05:44 PM Revision 3e625af9 (cdm-vaadin): fix #7892 proper initialization of references for new taxon names
Andreas Kohlbecker
04:42 PM Revision 592cd32e (cdm-vaadin): ref #7893 supplying editor context information for new name button
Andreas Kohlbecker
04:37 PM Revision 7d55de9a (cdm-vaadin): fix #7893 always re-enabling the new name button when the new nam...
Andreas Kohlbecker
03:51 PM Revision 73f51846 (cdmlib): ref #7884 ref #7890 fixing NPE in name controllers
Andreas Kohlbecker
03:26 PM Revision 3c088da3 (cdm-dataportal): ref #7884 ref #7890 fixining some problems in name relations ...
Andreas Kohlbecker
03:05 PM Revision 6bae07b0 (cdmlib): ref #7887 Adapt moving terms based on DTOs
Patrick Plitzner
03:05 PM Revision fd61512c (taxeditor): ref #7887 Adapt moving terms based on DTOs
Patrick Plitzner
12:18 PM Revision d4ea0dd9 (cdm-dataportal): ref #7884 ref #7890 refactoring of name relations rendering a...
Andreas Kohlbecker
12:16 PM Revision 941a7fd0 (cdmlib): ref #7884 ref #7890 fixing LIE in name controllers regarding name rel...
Andreas Kohlbecker
11:47 AM task #5857: show nomenclatural status for for representations of TaxonName
also relevant for E+M, need to check how this is handled in BM E+M Andreas Müller
11:47 AM Revision ece2b239 (taxeditor): ref #7887 Implement editing of DTOs in details view
Patrick Plitzner
11:32 AM task #7890 (New): Display of name relations in the data portal [master ticket]
There are multiple issues regarding the display of name relationships in the portal, this ticket encloses all of these. Andreas Kohlbecker
09:26 AM Revision 67f98be5 (taxeditor): ref #7887 Refactor isModifiable() property test
Patrick Plitzner
09:16 AM Revision 37c60b14 (taxeditor): ref #7887 Adapt postOperation in term editor
- do not set dirty flag
- expand parent node
Patrick Plitzner
08:59 AM Revision 5ee3fb57 (taxeditor): ref #7887 Refactor AbstractPostOperation.postExecute() to Object
Patrick Plitzner
08:58 AM Revision 75c87e6f (taxeditor): ref #7887 Refactor IPostOperationEnabled.postOperation() to Object
Patrick Plitzner
08:20 AM Revision fe08ca2d (taxeditor): ref #7887 Use vocabulary service for term creation directly
Patrick Plitzner
08:19 AM Revision 1ce2be53 (cdmlib): ref #7887 Add service method for term create
Patrick Plitzner
07:43 AM Revision 036767ba (taxeditor): Merge branch 'develop' into areaSelect
Patrick Plitzner
07:43 AM Revision 45f49bea (taxeditor): Switch gfbio term service to production server
Patrick Plitzner
07:35 AM Revision b405585f (taxeditor): ref #7887 Use service for term creation directly
Patrick Plitzner
07:33 AM Revision 6baf8c40 (cdmlib): ref #7887 Add service methods for term move and create
Patrick Plitzner

11/06/2018

05:41 PM Revision f87155dc (taxeditor): ref #7887 code cleanup
Patrick Plitzner
03:59 PM Revision d02a5189 (taxeditor): ref #7887 Adapt term creation handler/operation to DTO (experimental)
Patrick Plitzner
03:36 PM Revision 792a9d48 (cdm-dataportal): improving description regarding placeholder image
Andreas Kohlbecker
03:31 PM feature request #7888: TypeSpecimenEditor: Collection date should be timespan
please review Andreas Kohlbecker
03:31 PM feature request #7888 (Resolved): TypeSpecimenEditor: Collection date should be timespan
Applied in changeset commit:cdm-vaadin|6fa4d6045855f038548d75d54ad5776f770f1992. Andreas Kohlbecker
02:03 PM feature request #7888: TypeSpecimenEditor: Collection date should be timespan
In the GatheringEvent the gatheringDate setter and getters only operate with Partials but the gatheringDate value is... Andreas Kohlbecker
11:47 AM feature request #7888: TypeSpecimenEditor: Collection date should be timespan
Collection geo reference: uncertainty already solved Wolf-Henning Kusber
10:20 AM feature request #7888 (Closed): TypeSpecimenEditor: Collection date should be timespan
There is an uncertainty in many old and new publications, for example only mm.yyyy or Autumn YY given, this can be ha... Wolf-Henning Kusber
03:30 PM Revision 6fa4d604 (cdm-vaadin): fix #7888 using EventBase.timespan for collection date
Andreas Kohlbecker
03:11 PM Revision 4b75986b (taxeditor): ref #7887 Change idInVocabulary to String
Patrick Plitzner
03:11 PM Revision ec95ad8e (cdmlib): ref #7887 Change idInVocabulary to String
Patrick Plitzner
02:40 PM Revision 3e72f342 (taxeditor): ref #7887 USe idInVocabulary and kindOfUuid of DTO
Patrick Plitzner
02:40 PM Revision ab4b0d27 (cdmlib): ref #7887 Add idInVocabulary and kindOfUuid to DTO + refactoring
Patrick Plitzner
01:30 PM bug #7889 (Closed): IE 11 cannot access apache on edit-comunity over https
The IE 11 which has a user agent string like
~~~
Mozilla/5.0 (Windows NT 6.3; Trident/7.0; rv:11.0) like Gecko
...
Andreas Kohlbecker
01:20 PM bug #7889 (Closed): IE 11 cannot access apache on edit-comunity over https
The following URLs can not be accessed with IE 11
* https://dev.e-taxonomy.eu/redmine/projects/edit/wiki
* https...
Andreas Kohlbecker
11:20 AM task #7846: PopupEditors show editor context information as 'breadcrumbs' in the header or toolbar.
please take a look Andreas Kohlbecker
11:12 AM task #7846 (Resolved): PopupEditors show editor context information as 'breadcrumbs' in the heade...
Applied in changeset commit:cdm-vaadin|ae69029fdb060770bd05a8c3cf578541bf01daf9. Andreas Kohlbecker
11:11 AM Revision ae69029f (cdm-vaadin): fix #7846 editor context information shown as breadcrumbs in the ...
Andreas Kohlbecker
11:10 AM Revision 5c609182 (cdm-vaadin): svg icons triangle-right-wide
Andreas Kohlbecker

11/05/2018

04:34 PM Revision 9f7d1f40 (taxeditor): ref #7887 Use DTOs in term editor (experimental)
Patrick Plitzner
04:29 PM Revision 7e89fd99 (cdmlib): ref #7887 Extract AbstractTermDto + add vocabulary dto service method
Patrick Plitzner
02:14 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
The general DB preferences are moved now to an extra page so they are not stored, if not opened.
Katja Luther
02:06 PM Revision b123c0b7 (taxeditor): ref #7849: move general db preferences to its own tab to avoid sav...
Katja Luther
02:04 PM Revision e7e84104 (taxeditor): update term cache when editing preferred terms in local preferences
Katja Luther
01:51 PM Revision ebd8810b (taxeditor): ref #7887 Fix potential NPE
Patrick Plitzner
01:51 PM Revision 8e85af8b (taxeditor): ref #7887 Add operations framework to term editor
Patrick Plitzner
01:49 PM feature request #7887 (Closed): Use DTOs in term editor
Patrick Plitzner
01:40 PM feature request #7886: Divide local preferences to db dependend local preferences
The local preferences are stored with the instance name now. The setting of default values are moved to contextStart ... Katja Luther
01:35 PM feature request #7886 (Resolved): Divide local preferences to db dependend local preferences
the local preferences are set for a taxEditor instance which is critical if the different cdm instances have differen... Katja Luther
01:29 PM Revision c643a8b9 (cdmlib): ref #7875 javadoc
Patrick Plitzner
12:10 PM bug #7883 (Closed): IndexOutOfBoundsException in TermComboElement
this works as expected. Katja Luther
11:37 AM bug #7880 (In Progress): Implement centralized preference default loading strategy
The initialization of the preferences is already moved to contextStart in LifeCycleManager, so the cdm data store is ... Katja Luther
11:37 AM Revision 060c7e9f (taxeditor): db specific local preferences adaption
Katja Luther
11:36 AM Revision 44be1b98 (taxeditor): ref #7880: improve search configuration initialization
Katja Luther
11:20 AM Revision 7832ef53 (taxeditor): ref #7875 Performance optimization for term content provider
- Load complete term hierarchy
- always return true for vocabulary hasChildren()
Patrick Plitzner
10:47 AM Revision 4db1bbe6 (taxeditor): ref #7875 Refactor term label provider
- add Styler to label provider Patrick Plitzner
10:47 AM Revision 0ebf52c1 (cdmlib): ref #7875 Add service method to load complete term hierarchy
Patrick Plitzner
10:36 AM Revision 19f02eea (taxeditor): Merge branch 'develop' into areaSelect
Patrick Plitzner

11/02/2018

03:00 PM bug #7885: registration search by name finds also typifications for this name
Combined seach name=Achnanthes gracillima plus Type=lectotype with no result (feature request)
Search=lectotype gi...
Wolf-Henning Kusber
12:06 PM bug #7885 (New): registration search by name finds also typifications for this name
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/f40c2286-1ba2-40b4-8afb-bd383b9b5312
Production ...
Wolf-Henning Kusber
02:53 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Reference Editor of Vaadin (2018-11-02) in square brackets: Differences in the TaxEditor
*Article*
Date published...
Wolf-Henning Kusber
01:55 PM Revision ceed9ceb (taxeditor): ref #7875 Fix initial selection of tree items
Patrick Plitzner
12:20 PM Revision 92f149d1 (taxeditor): Merge branch 'hotfix/5.4.2'
jenkins
12:00 PM bug #7884 (Duplicate): Replacement name not shown in Portal
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/144a44d0-730e-42b5-82b5-6d012db7d5d7
Production ...
Wolf-Henning Kusber
11:59 AM Revision dca5b257 (taxeditor): ref #7883 Revert visibility of class members + delete ambiguous me...
Patrick Plitzner
11:59 AM Revision 403ae331 (taxeditor): fix #7877 Fix refresh problem of wizard detail elements
Patrick Plitzner
11:59 AM Revision 5343149f (taxeditor): Updated version in pom / project files to taxeditor version : 5.4....
jenkins
11:54 AM Revision d037c408 (taxeditor): Merge branch 'hotfix/5.4.1'
jenkins
11:31 AM Revision a25f780a (taxeditor): Updated version in pom / project files to taxeditor version : 5.4....
jenkins
09:42 AM bug #7883 (Resolved): IndexOutOfBoundsException in TermComboElement
Patrick Plitzner
09:18 AM bug #7883: IndexOutOfBoundsException in TermComboElement
Fixed the problem by removing ambiguous method `setTerms()` which "overwrote" the actual filtering of the terms accor... Patrick Plitzner
08:56 AM bug #7883 (Closed): IndexOutOfBoundsException in TermComboElement
The combo element does not filter its elements according to the feature. It always shows all terms.
Example: Confi...
Patrick Plitzner
09:19 AM Revision 1610c4b8 (taxeditor): ref #7883 Revert visibility of class members + delete ambiguous me...
Patrick Plitzner
06:57 AM Revision 3c6e3fc6 (taxeditor): ref #7875 Adapt to TermDto based services
Patrick Plitzner
06:56 AM Revision 2d4cb2bf (cdmlib): ref #7875 Implement term service based on TermDto
Patrick Plitzner

10/31/2018

03:23 PM Revision 0ad58288 (taxeditor): enable multi-select for feature tree composite
Patrick Plitzner
10:38 AM Revision 54457f88 (taxeditor): ref #7806 Fix URL compilation for gfbio term search
Patrick Plitzner
09:34 AM feature request #7875 (Resolved): Add multiple area selection to descriptive data set editor
Patrick Plitzner

10/30/2018

10:42 PM bug #7882 (Duplicate): TeamOrPersonField: exception when selecting author
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/b52f4ef7-5743-44eb-84c9-0b06e67a256d
Produktions...
Andreas Kohlbecker
10:38 PM bug #7881 (Closed): reference selection combobox broken after error in ...
reported by henning:
17:44, der Fehler, den ich eben gemeldet habe (#7882) kann nicht ganz so dramatisch gewesen...
Andreas Kohlbecker
03:59 PM Revision cae7d9c1 (taxeditor): Adapt gfbio term search to use '*' wild card search
Patrick Plitzner
02:55 PM bug #7880 (Closed): Implement centralized preference default loading strategy
Some preferences are loaded at Taxeditor startup before any connection to a CDM data source was made. Since some pref... Patrick Plitzner
11:52 AM bug #7878: Edit CollectionCode not saved
The type designation editor is not refreshing the cache with the updated collection entity. Andreas Kohlbecker
11:22 AM bug #7879 (New): Book CacheStrategy does not show 'place published', 'publisher', 'editor'
the same problem seems to exist with `Print series`
----
Originally reported by Henning:
Hallo Andreas,
i...
Andreas Kohlbecker

10/29/2018

07:54 PM Revision 9df52c92 (taxeditor): ref #7875 Adapt to UuidAndTitleCache based services
Patrick Plitzner
04:31 PM feature request #7408: [E+M] Support for preferred common names in data portal
~~~
SELECT DISTINCT tb.id, tb.uuid, tb.titleCache, m.markerType_id
FROM DescriptionElementBase deb INNER JOIN Descr...
Andreas Müller
04:24 PM feature request #7408: [E+M] Support for preferred common names in data portal
Campanula trachelium (http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/taxon/ec389413-4102-43bc-9... Andreas Müller
11:50 AM feature request #7408 (Feedback): [E+M] Support for preferred common names in data portal
Please provide an example dataset. Andreas Kohlbecker
04:08 PM bug #7877: Form elements disappear in reference dialog after changing the reference type
Other work around: use "New" in bulk editor. Type change in details view works. Andreas Müller
01:14 PM bug #7877: Form elements disappear in reference dialog after changing the reference type
This was a refresh problem that was introduced with the performance optimization for this release.
Workaround unti...
Patrick Plitzner
01:12 PM bug #7877 (Resolved): Form elements disappear in reference dialog after changing the reference type
Applied in changeset commit:taxeditor|d728f00fbfb5b64be4c1f1fc3c6bd4d1162f42c7. Patrick Plitzner
12:54 PM bug #7877: Form elements disappear in reference dialog after changing the reference type
Patrick meint:
> Das ist ein Refresh-Problem
> einmal am Dialogfenster zupfen und es ist alles da
> zupfen = resize
Andreas Kohlbecker
11:49 AM bug #7877 (Closed): Form elements disappear in reference dialog after changing the reference type
TaxEditor 5.4.0
Tested with PhycoBank
File, New, Reference opens Reference Editor with default value "generic".
Se...
Wolf-Henning Kusber
03:59 PM Revision ce2334e5 (taxeditor): ref #7875 Use UuidAndTitleCache based services for area selection ...
Patrick Plitzner
03:57 PM Revision 74bdd593 (cdmlib): ref #7875 Implement term service based on UuidAndTitleCache
Patrick Plitzner
02:04 PM bug #7878 (Closed): Edit CollectionCode not saved
Vaadin UI, production system:
Working Set http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/cfdf0...
Wolf-Henning Kusber
01:12 PM Revision d728f00f (taxeditor): fix #7877 Fix refresh problem of wizard detail elements
Patrick Plitzner
01:10 PM Revision 065e4df4 (taxeditor): Fix possible NPE
Patrick Plitzner
10:56 AM Revision 790e1587 (taxeditor): ref #7875 Fix tree checkbox behavior + extract dialog class
Patrick Plitzner
10:28 AM feature request #7876 (New): Vaadin UI status update
Thema: Update bei Status-Änderung, betrifft Produktionssystem:
Als Curator muss jeder Eintrag jeweils von Preparatio...
Wolf-Henning Kusber

10/27/2018

12:04 PM bug #7872: use firePropertyChange only if the value has changed
Andreas Kohlbecker wrote:
> great and agreed!
>
> one hit before closing this as "worksforme", just in case you m...
Andreas Müller

10/26/2018

06:24 PM bug #7870 (Closed): RegistrationWorkingsetEditor: Internal error on clicking "new name"
I added to modifications
* adding the WindowErrorHandler also to the VaadinSession
* clearing the session to wipe...
Andreas Kohlbecker
01:45 PM bug #7870: RegistrationWorkingsetEditor: Internal error on clicking "new name"
above sub issue copied to #7874 Andreas Kohlbecker
01:42 PM bug #7870: RegistrationWorkingsetEditor: Internal error on clicking "new name"
AM:
ganz so kritisch ist es glaube ich nicht. Letztlich muss man nur den cache updaten mit dem Cacheupdater. Aller...
Andreas Müller
01:29 PM bug #7870: RegistrationWorkingsetEditor: Internal error on clicking "new name"
The initial problem is cause by the `protectedNomenclaturalTitleCache` flag of the Team being set to `false`. When bi... Andreas Kohlbecker
09:01 AM bug #7870 (Closed): RegistrationWorkingsetEditor: Internal error on clicking "new name"
Encrypted by a verified device
14:04 als submitter eine neue Referenz angelegt (StartRegistrationView), dann new "C...
Andreas Kohlbecker
06:22 PM Revision 1bc25606 (cdm-vaadin): ref #7870 clearing the session to wipe out any left overs from pr...
Andreas Kohlbecker
06:21 PM Revision 4329130b (cdm-vaadin): ref #7870 adding the WindowErrorHandler also to the VaadinSession...
Andreas Kohlbecker
06:16 PM bug #7872 (Worksforme): use firePropertyChange only if the value has changed
great and agreed!
one hit before closing this as "worksforme", just in case you missed this out so far:
Since j...
Andreas Kohlbecker
04:03 PM bug #7872 (Resolved): use firePropertyChange only if the value has changed
If you follow the firePropertyChange call you come to PropertyChangeSupport
~~~ java
public void fireProperty...
Andreas Müller
12:19 PM bug #7872 (Worksforme): use firePropertyChange only if the value has changed
this is an example from `Team` where a `PropertyChangeEvent` is fired even if `this.nomenclaturalTitle.equals(nomenc... Andreas Kohlbecker
05:42 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on ...
please review Andreas Kohlbecker
05:40 PM bug #7874 (Resolved): TeamOrPersonBase entity can become unusable due to replacement of the title...
Applied in changeset commit:cdmlib|cfcf723b6485a38d3b39e4d53696036d212d6d6c. Andreas Kohlbecker
05:39 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on ...
Running the CacheUpdater should fix the issue. But the method `IdentifiableServiceBase.updateTitleCacheForSingleEntit... Andreas Kohlbecker
04:07 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on ...
Andreas Kohlbecker wrote:
> The Problem comes from the Person named "A.M. Monroe" which has been entered in the Taxe...
Andreas Müller
02:27 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on ...
The Problem comes from the Person named "A.M. Monroe" which has been entered in the Taxeditor by Henning on 2018-04-2... Andreas Kohlbecker
01:45 PM bug #7874: TeamOrPersonBase entity can become unusable due to replacement of the title caches on ...
AM:
ganz so kritisch ist es glaube ich nicht. Letztlich muss man nur den cache updaten mit dem Cacheupdater. Aller...
Andreas Kohlbecker
01:44 PM bug #7874 (Closed): TeamOrPersonBase entity can become unusable due to replacement of the title c...
This issue is quite good explainable by the case examined in #7870#note-1 :
The initial problem is cause by the `p...
Andreas Kohlbecker
05:40 PM Revision cfcf723b (cdmlib): fix #7874 updating also the nomenclaturalTitle in updateTitleCacheFor...
Andreas Kohlbecker
04:39 PM feature request #7640: Update ISO country names where necessary
Musste heute im PhycoBank Production-System einen Country-Eintrag wieder rausnehmen. Ich wollte den Eintrag "Romania"... Wolf-Henning Kusber
04:08 PM Revision 4e514541 (taxeditor): ref #7875 first implementation of multiple area select (experimental)
Patrick Plitzner
04:06 PM feature request #7875 (Closed): Add multiple area selection to descriptive data set editor
Patrick Plitzner
01:30 PM Revision 08bcc80a (taxeditor): Increase gfbio term search timeout
Patrick Plitzner
01:27 PM feature request #7873 (Resolved): Implement copy&paste for feature nodes in feature tree editor
Applied in changeset commit:taxeditor|f3065796575239dbdc4afab4207bf70d87d72536. Patrick Plitzner
01:26 PM feature request #7873 (Closed): Implement copy&paste for feature nodes in feature tree editor
Patrick Plitzner
01:26 PM Revision f3065796 (taxeditor): fix #7873 Implement copy&paste for feature nodes in feature tree e...
Patrick Plitzner
12:24 PM task #7866: Phycobank UI further label improvements
wording also acceptec by Regine Wolf-Henning Kusber
09:30 AM Revision 7ec143e3 (taxeditor): ref #7715 re-enable source section in supplemental view for descri...
Patrick Plitzner
09:24 AM feature request #7871 (Resolved): Open character matrix as singleton
Applied in changeset commit:taxeditor|fcb2dae63a03e03ad65a4b0f2f564a5e002c0582. Patrick Plitzner
09:24 AM feature request #7871 (Closed): Open character matrix as singleton
The character matrix should only be opened once for a descriptive data set Patrick Plitzner
09:24 AM Revision fcb2dae6 (taxeditor): fix #7871 Open character matrix as singleton
Patrick Plitzner
09:23 AM feature request #7869 (Resolved): Run gfbio term service requests as background tasks
Patrick Plitzner
08:43 AM feature request #7869 (Closed): Run gfbio term service requests as background tasks
Patrick Plitzner
09:20 AM feature request #7868 (Resolved): Allow creating a new vocabulary in vocabulary selection dialog
Applied in changeset commit:taxeditor|aa95aad0606b24de8df073a2f2614e86ab91718b. Patrick Plitzner
08:10 AM feature request #7868 (Closed): Allow creating a new vocabulary in vocabulary selection dialog
Patrick Plitzner
09:17 AM Revision f3077849 (taxeditor): ref #7869 Run request for availabel ontologies in background task
Patrick Plitzner
08:47 AM Revision fb259956 (taxeditor): ref #7869 Run ontology search in background task
Patrick Plitzner
08:25 AM Revision aa95aad0 (taxeditor): fix #7868 Allow creating a new vocabulary in vocabulary selection ...
Patrick Plitzner
08:24 AM Revision c2527228 (taxeditor): ref #7806 Do not set dirty flag when voc selection was canceled
Patrick Plitzner
08:15 AM Revision 72774356 (taxeditor): ref #7806 Add warning for long running searches
Patrick Plitzner
07:58 AM Revision 05eb2382 (taxeditor): code refactoring + typo
Patrick Plitzner

10/25/2018

07:14 PM bug #7857: Update name relationship type representations and symmetrie
~~~ sql
UPDATE DefinedTermBase
SET symmetrical=0
WHERE uuid IN ('049c6358-1094-4765-9fae-c9972a0e7780', '6e23ad4...
Andreas Müller
07:11 PM feature request #7434: while importing sequences it should be possible to download fasta file
Can you please add a category? Andreas Müller
06:38 PM bug #7867 (Resolved): FieldGroup$BindException: The given field is not part of this FieldBinder i...
this issue is neither reproducible nor comprehensible, I tries to change the code in a way to avoid this issue in fut... Andreas Kohlbecker
06:00 PM bug #7867 (Closed): FieldGroup$BindException: The given field is not part of this FieldBinder in ...
[reported by henning]
Testsystem:
http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/537f...
Andreas Kohlbecker
06:30 PM Revision dee4cf65 (cdm-vaadin): ref #7867 attempting to avoid FieldGroup in TeamOrPersonField wit...
Andreas Kohlbecker
03:32 PM Revision 6537364c (taxeditor): Merge branch 'develop' into wordExport
Patrick Plitzner
03:32 PM Revision 892c023e (taxeditor): ref #7844 Show fail text when connection times out
Patrick Plitzner
03:32 PM Revision bcb47e99 (cdmlib): Merge branch 'develop' into wordExport
Patrick Plitzner
03:01 PM Revision c6fd42f2 (cdm-server): Merge branch 'release/5.4.0' into develop
jenkins
03:01 PM Revision 2ce817a4 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
03:00 PM Revision 5bd8483d (cdm-server): updating poms for branch'release/5.4.0' with non-snapshot versions
jenkins
03:00 PM Revision 858166f7 (cdm-webapp): Merge branch 'release/5.4.0' into develop
jenkins
03:00 PM Revision 59e5a93e (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
02:59 PM Revision b9970363 (cdm-webapp): updating poms for branch'release/5.4.0' with non-snapshot versions
jenkins
02:59 PM Revision 8361e62c (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.4.0
jenkins
02:48 PM Revision 5c0bc2b3 (cdm-dataportal): Merge branch 'release/5.4.0' into develop
jenkins
02:47 PM Revision d2fa3541 (cdm-dataportal): updating poms for branch'release/5.4.0' with non-snapshot ver...
jenkins
02:47 PM Revision 9d38710f (cdm-dataportal): release-preparation: production level css
jenkins
02:47 PM Revision 62c4807f (cdm-vaadin): Merge branch 'release/5.4.0' into develop
jenkins
02:46 PM Revision 3b4f7be8 (taxeditor): Merge branch 'release/5.4.0' into develop
jenkins
02:46 PM Revision 5f034f9d (taxeditor): Merge branch 'release/5.4.0'
jenkins
02:44 PM Revision 3b7e9a8a (cdm-vaadin): updating poms for branch'release/5.4.0' with non-snapshot versions
jenkins
02:43 PM Revision 00cc67ea (cdm-vaadin): jenkins bumping cdmlib.version to 5.4.0
jenkins
02:43 PM Revision 9b0b5ecb (cdmlib): Updating develop poms back to pre merge state
jenkins
02:43 PM Revision 11a45750 (cdmlib): Merge branch 'master' into develop
jenkins
02:43 PM Revision ac7c8a7c (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
02:43 PM Revision 1d1f800b (cdmlib): Merge branch 'release/5.4.0'
jenkins
02:26 PM Revision 42b6eb5f (cdmlib): updating poms for branch'release/5.4.0' with non-snapshot versions
jenkins
02:09 PM Revision 44ad5ba2 (taxeditor): Updated version in pom / project files to taxeditor version : 5.5....
jenkins
02:08 PM Revision 0a065607 (taxeditor): Updated version in pom / project files to taxeditor version : 5.4....
jenkins
02:08 PM Revision 4143b04a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.4.0-SN...
jenkins
02:08 PM Revision 841f67ba (cdm-webapp): updating poms for 5.5.0-SNAPSHOT development
jenkins
02:08 PM Revision 666e6b13 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.5.0-SN...
jenkins
02:06 PM Revision 13705783 (cdm-vaadin): jenkins bumping cdmlib.version to 5.4.0-SNAPSHOT
jenkins
02:06 PM Revision bb2324f9 (cdm-vaadin): updating poms for 5.5.0-SNAPSHOT development
jenkins
02:06 PM Revision 1f3dc75d (cdm-vaadin): jenkins bumping cdmlib.version to 5.5.0-SNAPSHOT
jenkins
02:05 PM Revision ea5a834d (cdm-server): updating poms for 5.5.0-SNAPSHOT development
jenkins
02:05 PM Revision 4ceb0a6f (cdm-dataportal): updating poms for 5.5.0-SNAPSHOT development
jenkins
02:03 PM Revision 22c932b7 (cdmlib): updating poms for 5.5.0-SNAPSHOT development
jenkins
01:57 PM Revision d91c1723 (taxeditor): Increase gfbio term search timeout
Patrick Plitzner
01:35 PM Revision 1e0fedbd (taxeditor): Change order of restart menu
Patrick Plitzner
01:33 PM Revision 6cac39d7 (taxeditor): Remove Core Expression for restart menu
Patrick Plitzner
01:30 PM Revision 5a4c3aac (taxeditor): Add "Restart" to General menu
- + i18n Patrick Plitzner
01:23 PM task #7355 (Closed): TaxonNamePopupEditor: newly created nomenclatural reference should be select...
works Andreas Kohlbecker
01:17 PM bug #7047 (Closed): Vaadin UI and View scope beans are not always destroyed correctly
this has been solved by the changes made for #7036 Andreas Kohlbecker
01:12 PM Revision 3a7c1c08 (taxeditor): Hide "Connect" menu when connected to a data source
Patrick Plitzner
01:12 PM Revision 2525cd92 (taxeditor): Increase gfbio term search timeout
Patrick Plitzner
01:09 PM bug #7222 (Closed): Phycobank UI improve labels
Wolf-Henning Kusber wrote:
> Offener ToDo-Text nach Diskussion mit Nick Turland (2018-10-25)
>
> Register a new n...
Andreas Kohlbecker
11:24 AM bug #7222: Phycobank UI improve labels
Offener ToDo-Text nach Diskussion mit Nick Turland (2018-10-25)
Register a new name or a new type designation.
Wolf-Henning Kusber
01:08 PM task #7866 (Closed): Phycobank UI further label improvements
**TODO**
* RegistrationDashboard: "Register a new name or a new type designation." suggested by Henning and Nick T...
Andreas Kohlbecker
01:05 PM Revision 8d788122 (cdm-vaadin): ref #7222 changing new registratino label to latest suggestion
Andreas Kohlbecker
12:53 PM Revision 77daaad4 (taxeditor): Disable preferences menu when not connected to a data source
Patrick Plitzner
12:45 PM Revision 2671a71c (taxeditor): Disabel public flag checkbox in node wizard in edit mode
Patrick Plitzner
12:33 PM bug #6287 (In Progress): Rolling cdmserver.log file only contains entries from startup phase
Andreas Kohlbecker
12:32 PM Revision 53894154 (taxeditor): ref #4611 Add missing translations
Patrick Plitzner
11:28 AM Revision 5e9919cc (taxongraph-view): adding node and edges in cytoscape.js data model for testing
Andreas Kohlbecker
11:09 AM bug #7855 (Closed): PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE ...
Andreas Kohlbecker
11:08 AM bug #7855 (Resolved): PersonField modifies the nomenclaturalTitle forcing users to have the UPDAT...
Applied in changeset commit:cdm-vaadin|db262dfa73bbc4f60e98b397b7986f05eefa6de6. Andreas Kohlbecker
11:03 AM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permissio...
my last nights impression on the cause of this problem was misled and thus not correct. The real cause is in the `Per... Andreas Kohlbecker
11:08 AM Revision db262dfa (cdm-vaadin): fix #7855 preventing nomenclaturalTitle from being changed in Per...
Andreas Kohlbecker
10:55 AM feature request #7775 (Closed): Factual Data label issue
remaining tasks have been moved to #7865 Patrick Plitzner
10:55 AM feature request #7865 (Resolved): Remaining factual data view label issues
Copied from #7775:
* If a source is added in the details view, and the titleCache is not protected, it should be g...
Patrick Plitzner
10:40 AM Revision bf0c676a (taxeditor): ref #7849 code refactoring
Patrick Plitzner
10:36 AM bug #7766 (Resolved): Remaining issues for using relationship DTO webservice in portal
Andreas Müller
10:23 AM feature request #7283 (Feedback): Improvements for alternative identifier search
Do I understand correctly that this functionality is only available for certain references searches? I tested for sea... Andreas Müller
10:21 AM feature request #7283: Improvements for alternative identifier search
I still fixed a new NPE: commit aaee4922 Andreas Müller
10:18 AM Revision cb56c869 (cdmlib): cleanup
Andreas Müller
10:17 AM Revision aaee4922 (cdmlib): ref #7283 fix NPE in AlternativeIdentifier constructor if no type is ...
Andreas Müller
09:43 AM Revision fb3b51ea (taxeditor): local preferences: if no db specific preference is available use t...
Katja Luther
09:34 AM feature request #7864: Use short forms in cache strategy for DescriptionBase
upps, just realized this is already implemented.
Only using the short form is still missing. Therefor relabel thi...
Andreas Müller
08:53 AM feature request #7864 (New): Use short forms in cache strategy for DescriptionBase
for how to implement see #7775.
something like "Factual Data from [source] for [taxon/specimen/name].
Use shor...
Andreas Müller
08:48 AM Revision 69e82edd (taxeditor): local preferences database specific
Katja Luther
08:03 AM feature request #7473: Replace PropertyChangeEvent architecture with e4 event bus in details view
subtask: Update changed source in description label (#7775#note-11) Patrick Plitzner
07:59 AM Revision f3df0663 (taxeditor): ref #7775 Select newly created description in factual data view
Patrick Plitzner
07:48 AM Revision 3dba4bc3 (taxeditor): Remove "Aggregate Taxon descriptions" menu from taxon navigator
Patrick Plitzner

10/24/2018

11:04 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
Patrick Plitzner wrote:
> "Änderungen an ABCD Import werden nicht gespeichert, außer allowOverride, aber auch das wi...
Katja Luther
10:33 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
Andreas Müller wrote:
> If the NomenclaturalCode is once set it can not be removed anymore in the DB Pref display ev...
Katja Luther
03:28 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
If the NomenclaturalCode is once set it can not be removed anymore in the DB Pref display even if the Preferences is ... Andreas Müller
02:56 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
"Änderungen an ABCD Import werden nicht gespeichert, außer allowOverride, aber auch das wird nicht richtig reloaded b... Patrick Plitzner
11:19 AM bug #7849: Improve DB Preferences handling and saving in TaxEditor
Das Problem ist aber eher, dass zuviel gespeichert wird.
Wenn man nur den DB Preferences Dialog öffnet und wieder sc...
Andreas Müller
11:02 PM Revision 923fbf1e (taxeditor): ref #7849: save ABCD configuration with correct preference subject
Katja Luther
10:30 PM Revision 8559a792 (taxeditor): check for the right preference in checklistEditor Handler
Katja Luther
08:59 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permissio...
Why should changes in type designation update the cache? Does it really update, I mean **change** the value or does i... Andreas Müller
07:51 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permissio...
I will adapt the subject of this issue since it is not adequately describing the root of the problem.
I feel like ...
Andreas Kohlbecker
07:43 PM bug #7855: PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE permissio...
the reason for this is that the cache strategy is modifying the `nomenclaturalTitle`
~~~
modified property found...
Andreas Kohlbecker
06:43 PM bug #7850: Further problems with term editor
Maybe one problem is the order index. After moving the area gets the highest order index though it is placed as child... Andreas Müller
06:37 PM bug #7850: Further problems with term editor
The problem always occurs during the second move. Moving first time works correctly. Andreas Müller
06:32 PM bug #7850: Further problems with term editor
Next time when opening term editor Belgium was completely gone, though in the DB everything was ok (vocabulary, paren... Andreas Müller
06:19 PM bug #7850: Further problems with term editor
still not yet fully fixed
![](picture357-1.png)
Andreas Müller
03:12 PM bug #7850 (Resolved): Further problems with term editor
Patrick Plitzner
06:22 PM bug #7814 (Closed): Section in Name and section in Basionym, usability
the status "worksforme" is applied to bug reports which can not be reproduced. In this context it means that there is... Andreas Kohlbecker
05:27 PM bug #7814 (Worksforme): Section in Name and section in Basionym, usability
Test 2: Neuer Name, neuer Autor in neuer Referenz, mit neuem Journal, ohne Fehler.
Aber: ich habe noch nicht alle ...
Wolf-Henning Kusber
05:01 PM bug #7814: Section in Name and section in Basionym, usability
Test: New reference, new name, new basionym, new section in new reference - without error Wolf-Henning Kusber
05:52 PM Revision 986b34c8 (taxeditor): ref #7849 Temporarily removed general DB preferences
Patrick Plitzner
05:24 PM task #7785: CdmUserHelper caches permission information
Sorry, currently I don't have time for review. But if it works for you review is not critical I think. Andreas Müller
05:13 PM Revision bdab9dc8 (taxeditor): shorten parent child rel ref label
Andreas Müller
05:10 PM feature request #7793: Master ticket for E+M editor issues
>DB preference to make all functionality related to multiple classification and reuse taxon support unavailable (exce... Andreas Müller
05:08 PM feature request #7793: Master ticket for E+M editor issues
>DB preference to make all functionality related to multiple classification and reuse taxon support unavailable
We...
Andreas Müller
04:49 PM feature request #7793: Master ticket for E+M editor issues
Andreas Müller wrote:
> >add menu items for setting of excluded or unplaced flag
>
> it seems to work with local ...
Andreas Müller
04:24 PM feature request #7793: Master ticket for E+M editor issues
>add menu items for setting of excluded or unplaced flag
it seems to work with local settings only, if one changes...
Andreas Müller
04:09 PM feature request #7793 (Feedback): Master ticket for E+M editor issues
Change "Use checklist perspective" seems to change local settings. Once this is set to true it was impossible for me ... Andreas Müller
03:27 PM feature request #7695 (Feedback): web service providing compact TypeDesignation representation fo...
... #7863
the last open issue regarding this is mentioned in #7695#note-4
who needs this and will continue the ...
Andreas Kohlbecker
03:20 PM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
currently we don't have a web service controller with `/homotypicGroup/` as base path. This would be a requirement fo... Andreas Kohlbecker
03:15 PM feature request #7695: web service providing compact TypeDesignation representation for homotypic...
Andreas Müller wrote:
> I wonder if we should really require a single name uuid as obligatory input parameter. The s...
Andreas Kohlbecker
03:22 PM feature request #7863 (New): /homotypicGroup/{uuid}/homotypicGroupTypeDesignationsDTO webservice ...
for details see #7695#note-9 Andreas Kohlbecker
03:20 PM Revision 39a72cef (taxeditor): ref #7849 Always show override checkbox in name details admin prefs
Patrick Plitzner
03:12 PM Revision 89cdb669 (taxeditor): ref #7850 Refresh vocabulary when moving terms
Patrick Plitzner
03:10 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names...
ok, all open tasks are copied to new issues: #7860, #7861
the reason why I passed this to you is written in comme...
Andreas Kohlbecker
03:06 PM task #7862 (New): improve documentation on TaxonGraphHibernateListener and related classes
the documentation on the TaxonGraphHibernateListener is still rudimentary and need to be improved
copied from #764...
Andreas Kohlbecker
03:03 PM feature request #7861 (New): TaxonGraphHibernateListener: inject the ITaxonGraphDao into TaxonGra...
we could think about refactoring the `TaxonGraphHibernateListener` a bit:
Andreas Müller suggested to inject the `...
Andreas Kohlbecker
02:54 PM bug #7036 (Closed): correctly release vaadin view resources when the browser windows has been closed
now all spring beans like RegistrationToolbar, RegistrationUI, RegistrationWorkingsetPresenter, NavigationManagerBean... Andreas Kohlbecker
02:53 PM bug #7036 (Resolved): correctly release vaadin view resources when the browser windows has been c...
Applied in changeset commit:cdm-vaadin|b14494a9c3be6a70f64c4560209ba8d406eb635f. Andreas Kohlbecker
02:53 PM Revision b14494a9 (cdm-vaadin): fix #7036 making sure all spring beans are disposed when the vaad...
- RegistrationToolbar, RegistrationUI, RegistrationWorkingsetPresenter, NavigationManagerBean as DisposableBean
- ...
Andreas Kohlbecker
02:52 PM Revision e974354a (taxeditor): ref #7849 Fix potential NPE
Patrick Plitzner
02:31 PM bug #7236: Make available distribution status a database preference for TaxEditor distribution ed...
It looks like the selected status are also written to the local preferences. This is very dangerous because
(1) c...
Andreas Müller
01:58 PM bug #7236 (Feedback): Make available distribution status a database preference for TaxEditor dist...
Generally it works.
Only open issue: if you change the status list you have to completely close and open the TaxE...
Andreas Müller
02:27 PM Revision 0c7f7de7 (taxeditor): ref #4611 i18n for admin preferences
Patrick Plitzner
02:14 PM feature request #7860 (New): [Master] Remaining E+M editor issues
this is a follow up ticket for #7793 after release 5.4 for all open issues and some new issues.
Detailsview
* M...
Andreas Müller
02:05 PM Revision cdad4890 (taxeditor): ref #7849 Set allowOverride to true
Patrick Plitzner
01:31 PM Revision 1af15fb7 (cdmlib): #7859 reverted max size for Pref.value. Test failed, need to check wh...
Andreas Müller
01:16 PM Revision 5e3a2c94 (taxeditor): ref #7849 Set override flag to true if no pref was found
Patrick Plitzner
01:14 PM Revision d3ec20ed (taxeditor): ref #7849 String externalization and label adjustment
Patrick Plitzner
12:58 PM Revision 325c8ebc (cdmlib): #7859 Changed length to 2000. Still need update script
Andreas Müller
12:57 PM bug #7859 (Closed): Increase size of CdmPreference.value
Storing longer term lists (as UUID lists) currently leads to exceptions. Andreas Müller
12:55 PM Revision 532a02bb (cdm-vaadin): ref #7858 removing delete button from name editor to avoid proble...
Andreas Kohlbecker
12:54 PM Revision a7058992 (cdmlib): cleanup
Andreas Müller
12:48 PM bug #7858 (New): names used in the TaxonGraph can not be deleted if the user has no DELETE permis...
Andreas Kohlbecker
12:42 PM bug #7845 (Resolved): NamePopupEditor new Genus button should clear the genus name field in the n...
the uninomial field for genus and higher ranks can be edited again. Andreas Kohlbecker
12:35 PM Revision a9316ea5 (taxeditor): code cleaning
Patrick Plitzner
12:33 PM Revision 959b2c17 (cdm-vaadin): ref #7830 ref #7814 fixing WeaklyRelatedEntityCombobox reset to t...
Andreas Kohlbecker
12:05 PM Revision 41058237 (taxeditor): ref #7844 Enhance error message when connection times out
Patrick Plitzner
12:05 PM Revision 9e4eb709 (taxeditor): ref #7844 Extend timeout to 7000ms
Patrick Plitzner
11:25 AM Revision f13fa7a2 (taxeditor): check if vocabulary preference page was opened
Katja Luther
11:09 AM bug #7222: Phycobank UI improve labels
#7222#note-15 in Diskussion (2018-10-24) Wolf-Henning Kusber
10:26 AM bug #7827 (Closed): LazyInitializationException when saving term editor (named areas)
Patrick Plitzner
10:08 AM Revision dba801a9 (cdmlib): #7849 set allow override to true as default in cdmlib CdmPreference
Andreas Müller
09:48 AM Revision 446a945a (taxeditor): ref #7775 Change menu order
Patrick Plitzner
09:28 AM bug #7848 (Closed): Exceptions for some cdm preference pages
Exception does not show up anymore. As it only appeared in 5.4 nightly I removed target version. Andreas Müller
09:20 AM feature request #7235 (Resolved): Make available area vocabularies a database preference for TaxE...
Applied in changeset commit:taxeditor|d4db40709483dba7f8451f64de1db944d0ba694e. Patrick Plitzner
09:20 AM Revision d4db4070 (taxeditor): fix #7235 Fix "allowOverride" flag for common name areas DB prefs
Patrick Plitzner
08:54 AM feature request #7809: Improve namerelationship handling in editor
Andreas Müller wrote:
> Works fine and can be closed. Only somehow open issue is that "symmetrical" relationships ar...
Katja Luther
07:57 AM Revision f662104a (taxeditor): ref #7810 Fix setting of specimen admin prefs
Patrick Plitzner
07:56 AM Revision b6c6423a (taxeditor): Comment unused method
Patrick Plitzner
07:12 AM bug #7844: LoginDialog freezes Taxeditor if no connection can be established
Andreas Müller wrote:
> This has been reverted due to failing test. Or did we only ignore the test?
>
> How shoul...
Patrick Plitzner
06:55 AM Revision c4c36f8e (taxeditor): ref #7810 Fix creation of local specimen preferences
Patrick Plitzner

10/23/2018

12:55 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Bulk Editor-"ShowFieldUnits in Specimen Editor (list) should be disabled.
However, we need move this to an other pag...
Andreas Müller
12:52 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In lokal preferences the "Specimens and FieldUnits" page is now always empty, even if showSpecimen = true. What was t... Andreas Müller
12:49 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Also it is not yet possible to select "allow override" if specimen are switched off in DB preferences. Andreas Müller
12:45 AM feature request #7810 (Feedback): DB preference to make all Specimen functionality/menu items inv...
Also we may want to disable the "Derivatives" perspective. Andreas Müller
12:43 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In Facts View we could remove all Features that need specimen support, or at least remove support for IndividualsAsso... Andreas Müller
12:38 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In name details view for all names of rank species and below we could remove the type designations section Andreas Müller
12:37 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
In preferences we could disable the Taxonomic-TypeDeignations(Specimen) part. Andreas Müller
12:34 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
TermEditor term types DnaMarker, DeterminationModifier, KindOfUnit can also be disabled (maybe we can implement this ... Andreas Müller
12:12 AM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Specimen imports are still shown.
![](picture585-1.png )
Note: this might be easier to handle if we group impor...
Andreas Müller
11:29 PM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
the check for the existence of the preference is needed to check whether the page was opened or not, because the pref... Katja Luther
04:08 PM feature request #7810 (Resolved): DB preference to make all Specimen functionality/menu items inv...
Applied in changeset commit:taxeditor|53d9aad00561967e0fbb8e3a87e5c0b2e57251e7. Patrick Plitzner
03:24 PM feature request #7810 (Feedback): DB preference to make all Specimen functionality/menu items inv...
Andreas Müller
03:24 PM feature request #7810: DB preference to make all Specimen functionality/menu items invisible
Currentyl can't test because preference can not be stored. See also #7849 Andreas Müller
10:46 AM feature request #7810 (Resolved): DB preference to make all Specimen functionality/menu items inv...
I think this was mostly fixed in the master ticket. Put to resolved to do the review if something is still missing. I... Andreas Müller
12:00 AM feature request #7809: Improve namerelationship handling in editor
I will keep this assigned to me to remember to update the symmetric values on our server DBs already and to update re... Andreas Müller
11:58 PM feature request #7809 (Feedback): Improve namerelationship handling in editor
Works fine and can be closed. Only somehow open issue is that "symmetrical" relationships are now shown twice. In gen... Andreas Müller
08:59 PM feature request #7809 (Resolved): Improve namerelationship handling in editor
this should be fixed now Katja Luther
11:36 PM bug #7857: Update name relationship type representations and symmetrie
also change "is new combination blocked by" to "has blocking name" Andreas Müller
11:30 PM bug #7857 (Closed): Update name relationship type representations and symmetrie
since #7809 it is now possible to store name relationships in both directions.
Many of the direct representations ...
Andreas Müller
11:10 PM Revision 4e6f2196 (taxeditor): fix save of db preferences not available in db before
Katja Luther
07:36 PM bug #7844 (Feedback): LoginDialog freezes Taxeditor if no connection can be established
This has been reverted due to failing test. Or did we only ignore the test?
How should I test it if feature is sti...
Andreas Müller
01:43 PM bug #7844 (Resolved): LoginDialog freezes Taxeditor if no connection can be established
Applied in changeset commit:taxeditor|a9c45e1e62a5e2b4af8107dba4cb1a27f9f3c076. Patrick Plitzner
12:47 PM bug #7844 (Feedback): LoginDialog freezes Taxeditor if no connection can be established
A timeout needs to be implemented Patrick Plitzner
07:34 PM feature request #7775: Factual Data label issue
final task: we should allow to set titleCache to protected, otherwise it is not possible to use user defined labels f... Andreas Müller
07:33 PM feature request #7775: Factual Data label issue
Patrick Plitzner wrote:
> The label in the factual data view is now updated when changing sources. But still it is n...
Andreas Müller
07:32 PM feature request #7775: Factual Data label issue
After creating Description it would be nice if the description gets the focus. This way you can also see the attached... Andreas Müller
07:27 PM feature request #7775: Factual Data label issue
The "New Factual Data Set with source" menu is now above the simple "New Factual Data Set" menu, but should be below. Andreas Müller
07:24 PM Revision abfc6b6e (taxeditor): ref #7063 change labels for dialog help
Andreas Müller
07:18 PM bug #7630 (Closed): blocking registration relations get lost after saving adding a typedesignatio...
solved Wolf-Henning Kusber
02:48 PM bug #7630: blocking registration relations get lost after saving adding a typedesignation to a ne...
this should be fully solved now
Andreas Kohlbecker
07:05 PM bug #7845 (In Progress): NamePopupEditor new Genus button should clear the genus name field in th...
The new popup form shows the preselected rank (species) and selecting Uninominal there is the dropdown OR the new but... Wolf-Henning Kusber
04:33 PM bug #7845: NamePopupEditor new Genus button should clear the genus name field in the new editor
solved, please review Andreas Kohlbecker
04:32 PM bug #7845 (Resolved): NamePopupEditor new Genus button should clear the genus name field in the n...
Applied in changeset commit:cdm-vaadin|3d093bed95b143473aad52db91c4954bf4398739. Andreas Kohlbecker
01:42 PM bug #7845 (Resolved): NamePopupEditor new Genus button should clear the genus name field in the n...
Clicking on the new button at the genus field in a NamePopupEditor opens a new NamePopupEditor with the genus name pr... Andreas Kohlbecker
06:44 PM feature request #7063: Improve the area selection wizard for distribution editor
I updated description to refelct our decisions how the selection tree should work Andreas Müller
06:36 PM feature request #7063 (Feedback): Improve the area selection wizard for distribution editor
Andreas Müller
06:12 PM feature request #7063: Improve the area selection wizard for distribution editor
Performance has been improved by preselecting vocabularies in DB prefs or local prefs. Andreas Müller
10:52 AM feature request #7063 (Resolved): Improve the area selection wizard for distribution editor
A lot of work on this has been done in #7793. I put to resolved to check if all issues reported here are resolved now. Andreas Müller
06:37 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
Resources which are still in memory after closing a browser window should be destroyed automatically once the next he... Andreas Kohlbecker
06:08 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
the problem seems mainly to be caused by the `NavigationManagerBean` not releasing the references to `RegistrationWor... Andreas Kohlbecker
04:57 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
after editing in parallel with 3 users for some time and closing all browser tabs afterwards, some spring beans like ... Andreas Kohlbecker
12:47 PM bug #7036: correctly release vaadin view resources when the browser windows has been closed
it seems as this is not yet solved. Andreas Kohlbecker
06:30 PM Revision 789f987c (taxeditor): ref #7063 remove "Base -" from area label for parent areas (was no...
Andreas Müller
06:07 PM bug #7856: Allow local override for distribution vocabularies
NOTE: currently when using the local preferences and deselecting some areas they are not shown anymore when you next ... Andreas Müller
05:59 PM bug #7856 (Closed): Allow local override for distribution vocabularies
copied from #7235
Currently local override for TaxDistributionEditor areas allows only to further reduce the vocab...
Andreas Müller
06:03 PM feature request #7235: Make available area vocabularies a database preference for TaxEditor distr...
Andreas Müller wrote:
>
> Only "local override" does not yet exist and therefore should the checkbox in DB prefs s...
Andreas Müller
05:08 PM feature request #7235 (Feedback): Make available area vocabularies a database preference for TaxE...
This works fine now. There are open issues with the setting of the local areas to be used. But this is another ticket... Andreas Müller
11:08 AM feature request #7235 (Resolved): Make available area vocabularies a database preference for TaxE...
I guess this is implemented with #7793 so I put to resolved for review Andreas Müller
05:49 PM bug #7855 (Closed): PersonField modifies the nomenclaturalTitle forcing users to have the UPDATE ...
User with role submitter creates a new specimen typedesignation and adds an existing collector for which the submitt... Andreas Kohlbecker
05:29 PM bug #7848 (Resolved): Exceptions for some cdm preference pages
I guess this is fixed with the given commits? Andreas Müller
03:03 PM bug #7848 (Closed): Exceptions for some cdm preference pages
There are NPEs and index exceptions for *ABCD import configuration* and *Nomenclatural Code Admin* Patrick Plitzner
05:25 PM Revision d909dc2b (cdm-vaadin): removin unused initstrategy
Andreas Kohlbecker
05:21 PM Revision 925bbb39 (taxeditor): ref #7063 change label for distribution area selection button
Andreas Müller
04:52 PM task #7854 (Closed): Open issues in TaxDistributionEditor

* ~~use NAT tables~~
* ~~improve area selection dialog~~ #7063
* remove factual data view, wenn opening distrib...
Andreas Müller
04:32 PM Revision 3d093bed (cdm-vaadin): fix #7845 new genus or species: setting value of genus or spec. e...
Andreas Kohlbecker
04:11 PM feature request #7502 (Closed): Add further columns to bulk editor
Open issues copied to new tickets. Close this ticket. Andreas Müller
04:11 PM feature request #7502: Add further columns to bulk editor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Question: does NAT support multi-sort? E.g. you want to sort fi...
Andreas Müller
04:08 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > The symbol still switches to label...
Andreas Müller
04:10 PM feature request #7853 (New): Support multi column sort for NAT tables (e.g. in bulk editor)
copied from #7502#note-16 Andreas Müller
04:08 PM Revision 53d9aad0 (taxeditor): fix #7810 Fix saving of specimen DB preferences
- failed to save when initally no preferences were set Patrick Plitzner
04:07 PM bug #7852 (New): NAT table symbols for boolean values change to text if columns are sorted
#7502#note-17 Andreas Müller
04:02 PM bug #7424: right click menu does not show up in name editor
As this is difficult to reproduce I close ticket. If it reoccurs we can reopen. Andreas Müller
04:02 PM bug #7424 (Closed): right click menu does not show up in name editor
PP: KL said this is fixed and discussed fix with me Andreas Müller
11:19 AM bug #7424 (Resolved): right click menu does not show up in name editor
Andreas Müller
11:19 AM bug #7424: right click menu does not show up in name editor
not sure if fully fixed already, however I set to resolved for review. Andreas Müller
04:01 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Can we create a new ticket for the remaining issues and close this one?
Does this ticket need further review from ...
Andreas Müller
03:54 PM bug #7851 (New): [DISCUSS] How to handle connection issues during tasks
If e.g. lazy loading fails any task (e.g. opening term editor) fails just at some undefined moment.
We need to handl...
Andreas Müller
03:44 PM bug #7827 (Feedback): LazyInitializationException when saving term editor (named areas)
removed open issues to new ticket #7850. I think we can close *this* ticket.
I only have a question: why can an LI...
Andreas Müller
01:01 PM bug #7827: LazyInitializationException when saving term editor (named areas)
I also can not reproduce the LIE anymore. However, whenever I move a term or save changes or even when opening E+M se... Andreas Müller
09:35 AM bug #7827 (Resolved): LazyInitializationException when saving term editor (named areas)
I added the named area level to the property path. With this change I could not reproduce this exception. This should... Patrick Plitzner
03:41 PM bug #7850: Further problems with term editor
AM:
Gibts für die MultiRep bzw. das Term Verschiebeproblem schon ein Ticket? Wenn ich ein Area verschiebe wird er ...
Andreas Müller
03:39 PM bug #7850: Further problems with term editor
Added commits from #727 related to this ticket to the ticket. Andreas Müller
03:33 PM bug #7850 (Duplicate): Further problems with term editor
After fixing LIE in #7827 there are further issues with term editor.
* Sometimes when opening or working with ter...
Andreas Müller
03:40 PM Revision 5d47cf79 (taxeditor): ref #7844 Filter out "localhost" cdm server in ping test
Patrick Plitzner
03:24 PM Revision 6f9a92e5 (taxeditor): ref #7844 Close http client after getting info
Patrick Plitzner
03:22 PM Revision bba916c9 (taxeditor): ref #7844 Close socket after ping
Patrick Plitzner
03:10 PM bug #7849: Improve DB Preferences handling and saving in TaxEditor
AM:
Grundsätzlich ist das Problem nicht ganz trivial, da das Zusammenspiel zwischen Default Werten, geänderten Wer...
Andreas Müller
03:09 PM bug #7849 (Feedback): Improve DB Preferences handling and saving in TaxEditor
Currently it often happens that DB preferences are not (correctly) saved if pressing OK or Apply in DB preferences di... Andreas Müller
03:07 PM Revision ebeb81f5 (taxeditor): ref #7848 Fix NPE
Patrick Plitzner
03:04 PM Revision 06738419 (taxeditor): ref #7848 Fix index out of bounds exception
Patrick Plitzner
03:04 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
if you think it is fixed shouldn't we set it to resolved and keep in 5.4 milestone? So we remember it as being primar... Andreas Müller
02:46 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
this should be fixed mean while according to the examination made for #7824
I am leaving this issue open to be con...
Andreas Kohlbecker
02:56 PM feature request #7660 (Closed): Indicate the row state in a NAT table via symbols
The row state is now indicated via symbol in title cache column. As described above a separate column would improve t... Andreas Müller
02:54 PM feature request #7847 (Closed): Use separate column for row state instead of symbol in titleCache...
copied from #7660#note-6 (description there) Andreas Müller
02:43 PM bug #7824 (Closed): PopupViewRegistration not removing registered views causes memleak
no more remains after editing in popups opened from the registrationworkingset Andreas Kohlbecker
02:38 PM bug #7822 (Duplicate): RegistrationUI potentially causes memory problems or deadlocks
Andreas Kohlbecker
02:02 PM feature request #7820: Add cron job for deleting cdmserver log files after a specified time period
the creation of rolling logs is still very much unreliabale so that working on this issue makes not much sense. Maybe... Andreas Kohlbecker
01:54 PM bug #6383 (Rejected): fatal error on git push: The remote end hung up unexpectedly
This will become irrelevant once we moved completely to github or gitlab.
Andreas Kohlbecker
01:53 PM bug #6257 (Worksforme): incorrect SNAPSHOT version after HFX release in cdm-vaadin and cdm-webapp
this did not occure again since 2 years Andreas Kohlbecker
01:49 PM bug #7783 (Closed): NamePopupEditor new buttons for genus and species
Wolf-Henning Kusber wrote:
> It should be pre-selected as "genus" or "species" respectively.
it works exactly lik...
Andreas Kohlbecker
01:16 PM bug #7783: NamePopupEditor new buttons for genus and species
Correction: Button new exists for genus, a new form is loaded. It should be pre-selected as "genus" or "species" resp... Wolf-Henning Kusber
01:05 PM bug #7783: NamePopupEditor new buttons for genus and species
Button new exists for genus, but seems to be without function (same form reloaded).
Functionallity for genus and spe...
Wolf-Henning Kusber
01:49 PM task #7846 (Closed): PopupEditors show editor context information as 'breadcrumbs' in the header ...
This is important for users not to lose track when opening multiple popups. Andreas Kohlbecker
01:47 PM feature request #7408: [E+M] Support for preferred common names in data portal
This is critical for Euro+Med Portal release Andreas Müller
01:43 PM Revision a9c45e1e (taxeditor): fix #7844 Add timeout to login dialog
Patrick Plitzner
01:03 PM bug #7835 (Closed): taxonGraph search block implemented
completed Andreas Kohlbecker
12:40 PM bug #7835 (Feedback): taxonGraph search block implemented
Andreas Müller
12:01 PM bug #7835 (Worksforme): taxonGraph search block implemented
Search implemented and functioning. Search result need some time. No user feedback, if a string is not in the system.... Wolf-Henning Kusber
01:02 PM Revision 0b494565 (cdm-dataportal): ref #7835 adding 'no results found' to registration search re...
Andreas Kohlbecker
12:38 PM task #7843 (New): blocking registrations can get lost when first TaxonNamePopupEditor with new na...
Consider the following situation:
1. Registration Workingset Editor: user starts creating a new name
1. From the ...
Andreas Kohlbecker
12:03 PM bug #7842 (Closed): TaxonNamePopEditor: adding new name as replaced synonym to name with basionym...
Andreas Kohlbecker
12:03 PM bug #7842 (Resolved): TaxonNamePopEditor: adding new name as replaced synonym to name with basion...
Applied in changeset commit:cdm-vaadin|c320e0fa87d07c13f3744f510c49504adf704f21. Andreas Kohlbecker
12:02 PM bug #7842: TaxonNamePopEditor: adding new name as replaced synonym to name with basionym causes N...
This problem is caused by the code which creates the blocking registrations see #7630 Andreas Kohlbecker
11:26 AM bug #7842 (Closed): TaxonNamePopEditor: adding new name as replaced synonym to name with basionym...
This case is not expected to occur often in real live situations:
A name has a basionym with authorship *A*. Addin...
Andreas Kohlbecker
12:03 PM Revision c320e0fa (cdm-vaadin): fix #7842 reloading registration before adding blocking registrat...
Andreas Kohlbecker
11:41 AM Revision f57aebc4 (cdmlib): ref #7831 using uuids in findTaxonNameParts() methods as name exclude...
Andreas Kohlbecker
11:37 AM bug #7723 (Closed): PhycoBank unpublished data must not be visible in Portal
Problem fixed, published records visible, unpublished records not visible. Wolf-Henning Kusber
11:18 AM feature request #7680: Refactor TaxonNodeDetailElement
some work has been done within #7793, I added the commits to *this* ticket.
However, due to the described problem ...
Andreas Müller
11:15 AM Revision d02788a3 (cdm-vaadin): ref #7630 fixing creation of blocking registrations realted to ne...
Andreas Kohlbecker
11:13 AM feature request #3989 (Resolved): [DISCUSS] Allow defining the vocabularies to be offered in the ...
maybe fixed already, so set to resolved Andreas Müller
11:11 AM bug #7236 (Resolved): Make available distribution status a database preference for TaxEditor dist...
I guess this is resolved with #6159 and #7793, set for review Andreas Müller
11:06 AM feature request #7283 (Resolved): Improvements for alternative identifier search
for review, move open issues to new ticket #7841 Andreas Müller
11:05 AM feature request #7841 (New): identifier search: filtering by identifier types
copied from #7283 Andreas Müller
10:57 AM bug #6159 (Resolved): improve distribution editor in TaxEditor
Setting this to resolved to do review. Open remaining issues ticket if necessary. Distribution will go online with th... Andreas Müller
10:48 AM feature request #7793 (Resolved): Master ticket for E+M editor issues
Set to resolved to do review for current version. Move open issues to follow up ticket. Andreas Müller
10:17 AM feature request #7840 (New): [DISCUSS] Remove authors from "Articles"
For nomenclatural references we do not necessarily need to store the author together with the "article". It is clear ... Andreas Müller
10:07 AM Revision 1f5b408c (taxeditor): ref #7827 Code cleanup
Patrick Plitzner
10:04 AM Revision 0bfb1b18 (taxeditor): ref #7827 Also remove generalizationOf if term is moved
Patrick Plitzner
10:04 AM Revision 3c6e3303 (taxeditor): ref #7827 Fix term/distribution content provider
- Remove accidental merging of "includes" set into "eneralizationOf"
set
Patrick Plitzner
10:03 AM bug #7839 (Duplicate): IJournal should not have author, date published etc.
Check again which parts are allowed for journals. Andreas Müller
09:36 AM Revision 602d39cf (taxeditor): ref #7827 Extend property path to NamedAreaLevel
Patrick Plitzner
09:36 AM Revision c0292658 (taxeditor): ref #7827 code cleaning
Patrick Plitzner
06:42 AM Revision f808cb88 (taxeditor): ref #7809: check if inverse representation is null instead of label
Katja Luther

10/22/2018

05:40 PM Revision 2ac69f0c (cdmlib): ref #7831 using uuids in findTaxonNameParts() methods as name exclude...
Andreas Kohlbecker
05:18 PM bug #7767 (In Progress): Incorrect handling of secundum detail reference in formatter
**TODO**: remove workaround applied with commit:cdm-dataportal|79f9e857 Andreas Kohlbecker
05:14 PM bug #7729 (New): potential ehcache CacheConfiguration problem
Andreas Kohlbecker
05:11 PM bug #7766 (Closed): Remaining issues for using relationship DTO webservice in portal
this issue seems complete, since #7771 is in it's own ticket. Andreas Kohlbecker
05:06 PM Revision aec3c7b7 (cdmlib): ref #7791 adding rank order index to TaxonGraphNodeDTO
Andreas Kohlbecker
05:05 PM Revision 876970d9 (cdmlib): ref #7834 bugfix: returning empty page when no name matches
Andreas Kohlbecker
04:37 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
for the coming release I will add the following configuration to edit-int, edit-test and edit-production:
~~~
##
...
Andreas Kohlbecker
02:48 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
we can use the Log4J config provided as
~~~
-Dlog4j.configuration=file:///opt/cdmserver/.cdmLibrary/log4j.proper...
Andreas Kohlbecker
02:45 PM bug #7827: LazyInitializationException when saving term editor (named areas)
I would move this issue to the next milestone because this exception does not happen every time.
The Termeditor ha...
Patrick Plitzner
02:40 PM bug #7827 (Feedback): LazyInitializationException when saving term editor (named areas)
I can't respoduce this reliably Patrick Plitzner
02:06 PM bug #7827 (In Progress): LazyInitializationException when saving term editor (named areas)
Patrick Plitzner
08:31 AM bug #7827 (Resolved): LazyInitializationException when saving term editor (named areas)
I added a property path to the term loading. Then I tried to reproduce the problem but it did not happen to me. Patrick Plitzner
02:41 PM Revision bb431d84 (cdm-server): ref #7085 changing logging initialization for more consistent log...
Andreas Kohlbecker
01:09 PM Revision a77e70cf (taxeditor): ref #7806 Add timeout to web requests
Patrick Plitzner
12:31 PM Revision bd3e9107 (cdmlib): Merge branch 'develop' into wordExport
Patrick Plitzner
12:30 PM Revision 4c8b61dd (taxeditor): ref #7806 Change search syntax
Patrick Plitzner
11:14 AM feature request #7838 (Closed): Optimize details view creation for section expansion
commit:taxeditor|ed60b90ee62498a090152019ecec946920feb2a8
commit:taxeditor|9d0d72efc1bb886e62820891ce080d84428052b1
...
Patrick Plitzner
11:10 AM feature request #7838 (Closed): Optimize details view creation for section expansion
Section expansion state should be evaluated at creation time Patrick Plitzner
11:11 AM bug #7814: Section in Name and section in Basionym, usability
this is fixed now, please confirm Andreas Kohlbecker
11:10 AM bug #7831 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when c...
fully solved Andreas Kohlbecker
11:08 AM feature request #7788 (Closed): Registration page shows registration date and office
Andreas Kohlbecker
11:07 AM bug #7777 (Closed): NPE on login attempt after logout
no more NPEs on re-logins Andreas Kohlbecker
09:52 AM feature request #7805 (Duplicate): GfBio Term Search issues
Patrick Plitzner
09:50 AM Revision edd8f8c8 (taxeditor): Refresh selection dialog after widget creation to evaluate button ...
Patrick Plitzner
09:14 AM bug #7835 (Resolved): taxonGraph search block implemented
implementation is complete, please review Andreas Kohlbecker
09:05 AM feature request #7775: Factual Data label issue
The label in the factual data view is now updated when changing sources. But still it is not directly updated in the ... Patrick Plitzner
08:35 AM feature request #7775: Factual Data label issue
Andreas Müller wrote:
> If reference selection dialog is canceled a new description is created, however AND an empty...
Patrick Plitzner
09:03 AM Revision c559d0b4 (taxeditor): ref #7775 Update label when changing sources
Patrick Plitzner
08:55 AM feature request #7791 (Resolved): Visualize the phycobank higher taxon graph
Andreas Kohlbecker
08:34 AM Revision a347d48a (taxeditor): ref #7775 Canceling reference selection does not create a description
Patrick Plitzner
08:29 AM Revision b32ea08b (taxeditor): ref #7827 Add property path to term loading in term editor
Patrick Plitzner
08:25 AM Revision b0ad8fba (taxeditor): i18n + code clean up
Patrick Plitzner
08:04 AM Revision 4d231867 (taxeditor): Remove misplaced <definition> tag in plugin extensions
Patrick Plitzner
07:58 AM feature request #7776: Add source of descriptive data set to SpecimenDescriptions added to it
@Andreas: A simple code review on the first commit is probably enough if you don't have the time to test it in live a... Patrick Plitzner
07:52 AM Revision dc6c8364 (cdm-server): ref #7085 Remove whitespace in log file time stamp
Patrick Plitzner

10/20/2018

01:23 PM feature request #7793: Master ticket for E+M editor issues
for taxon details view the possibility to disable the sec reference and to remove the sec detail is added to the name... Katja Luther
01:07 PM Revision 6fa5c755 (taxeditor): ref #7793: add possibility to disable sec and do not show sec details
Katja Luther

10/19/2018

11:25 PM Revision 62306db3 (taxeditor): ref #7793: fix named area and commonNameArea selection filter
Katja Luther
09:13 PM Revision e10f18ed (taxeditor): ref #6159:dirty flag only if status has changed in distribution ed...
Katja Luther
09:01 PM Revision b40f38ec (taxeditor): fix distribution editor label for columns and long label for status
Katja Luther
06:03 PM Revision 4670ff1d (cdmlib): ref #7834 avoiding NPE in case of names which are not in the graph
Andreas Kohlbecker
05:47 PM Revision b18d70f6 (cdm-dataportal): ref #7835 adding registration search block combining filter a...
Andreas Kohlbecker
05:46 PM bug #7779 (Closed): swagger UI broken after springfox-swagger2 upgrade
works again as expected Andreas Kohlbecker
11:42 AM bug #7779 (Resolved): swagger UI broken after springfox-swagger2 upgrade
Applied in changeset commit:cdmlib|695c2b14af3b70f3cf8b0c33fed45de81060ec13. Andreas Kohlbecker
09:53 AM bug #7779 (In Progress): swagger UI broken after springfox-swagger2 upgrade
the URLs of the static swagger doc needs to be adapted Andreas Kohlbecker
03:54 PM Revision ca5c272c (cdm-server): ref #7085 Adjust log path
Patrick Plitzner
03:54 PM Revision 3aae2857 (cdm-server): ref #7085 Set logging to daily rollover
Patrick Plitzner
03:54 PM Revision 045673ca (cdm-server): ref #7085 Adjust log path
Patrick Plitzner
03:54 PM Revision 04c948d8 (cdm-server): Revert "ref #7085 Use DailyRollingFileAppender (in code)"
This reverts commit 02ef1e472669c30153c94f27084bde7e85e9482b. Patrick Plitzner
03:53 PM Revision cf681ac9 (cdm-server): ref #7085 Use DailyRollingFileAppender (in code)
Patrick Plitzner
03:53 PM Revision 3775575b (cdm-server): ref #7085 Use DailyRollingFileAppender to generate one log per day
Patrick Plitzner
03:04 PM bug #7826 (Closed): NPE after saving groupbulkeditor
works Patrick Plitzner
02:59 PM feature request #7674 (Closed): Show taxon descriptions in character matrix editor
Patrick Plitzner
02:27 PM Revision c6997339 (taxeditor): Set dirty flag to false when closing checklist editor
Patrick Plitzner
02:11 PM Revision 45c989af (taxeditor): truncate distribution string
Andreas Müller
01:44 PM Revision 72937d27 (cdmlib): fix #7779 fixing missing file extension in StaticSwaggerApiDoc contro...
Andreas Kohlbecker
01:29 PM Revision ac22c576 (taxeditor): Use titleCache, not abbrev title for Distribution Sources
Andreas Müller
01:17 PM Revision 6df87ada (taxeditor): fix NPE in DistributionEditor source status
Andreas Müller
12:53 PM Revision fccd196f (taxeditor): handle empty symbol for status in distribution editor
Katja Luther
12:40 PM Revision 09ce7653 (taxeditor): distribution editor local preference is available if no db preference
Katja Luther
12:39 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
third issue:
unfortunately you committed all changes to the master branch:
~~~
* 469b75d - Fri, 12 Oct 2018 11...
Andreas Kohlbecker
12:24 PM bug #7085: cdmserver logfiles getting too big, use DailyRollingFileAppender
i found a second issue:
The rolling daily file appender only works if the custom loj4j.properties are defined in t...
Andreas Kohlbecker
12:19 PM bug #7085 (In Progress): cdmserver logfiles getting too big, use DailyRollingFileAppender
The rolled daily log files have a whitespace character, please remove the whitespace from the filenames.
~~~~
-rw...
Andreas Kohlbecker
12:34 PM Revision c92093d1 (taxeditor): ref #7837 Use .docx export in feature tree editor
Patrick Plitzner
12:33 PM Revision ecc9026b (cdmlib): ref #7837 Implement .docx (Word) export
Patrick Plitzner
12:32 PM Revision d9172f65 (cdmlib): ref #7837 Add org.apache.poi.ooxml-schemas to pom.xml
Patrick Plitzner
12:31 PM feature request #7837 (New): Implement export to .docx for feature tree editor
The resulting .docx file should contain the feature tree with each feature indented according to the hierarchy. Patrick Plitzner
11:59 AM Revision 566e18a2 (taxeditor): presenceAbsence terms in distribution editor are sorted, labels in...
Katja Luther
11:55 AM Revision 5195ddf2 (cdm-dataportal): ref #7835 minor fix for front page
Andreas Kohlbecker
11:42 AM Revision 695c2b14 (cdmlib): fix #7779 adapting the creation delivery of the static swagger doc to...
Andreas Kohlbecker
11:23 AM Revision d7936791 (taxeditor): do not save cdm preference which are not changed
Katja Luther
11:16 AM Revision f15b2642 (taxeditor): do not save cdm preference which are not changed
Katja Luther
11:03 AM Revision 4b3e5e40 (taxeditor): Labels for Area Selection updated
Andreas Müller
10:32 AM Revision 3ff7f19c (taxeditor): set preferences with missing db preference to default value
Katja Luther
10:12 AM bug #7836 (Closed): ClassCastException when invoking cdm light export with wrong selection
Steps to reproduce:
1. Select a FeatureTree in the FeatureTreeEditor (or e.g. a taxon description in the factual d...
Patrick Plitzner
10:11 AM Revision 36f97cf7 (taxeditor): revert change in plugin.xml
Katja Luther
09:53 AM Revision 88df332d (taxeditor): smaller changes in preferences for distribution vocabularies
Katja Luther
08:59 AM feature request #7345: [E+M] Common name references selectable in TaxEditor
now there is a cdmPreference CommonNameReferencesWithMarker which can be set to true, if the selection dialog should ... Katja Luther
08:58 AM Revision 5c331673 (taxeditor): ref
Katja Luther
08:56 AM Revision c8631826 (cdmlib): ref #7345: rename cdmPreference for common name marker
Katja Luther
06:55 AM Revision c8e611f0 (cdmlib): ref #7793: add preferencePredicate for disable multiple classifications
Katja Luther

10/18/2018

10:50 PM Revision efbff4b3 (cdm-dataportal): ref #7835 first version of taxonGraph search block implemented
- registration search page with tabs for filter search and taxon graph search
- changing the search page path was n...
Andreas Kohlbecker
10:35 PM feature request #7793: Master ticket for E+M editor issues
the following db preferences are not available in admin preference pages yet, but can be added in DB:
* disable mu...
Katja Luther
10:32 PM Revision 6e0d89ec (taxeditor): ref #7793: preference to disable id in source and name in source
Katja Luther
10:32 PM Revision 30189b61 (taxeditor): ref #7793: add cdm preference to disable multi classification func...
Katja Luther
08:16 PM bug #7779 (Resolved): swagger UI broken after springfox-swagger2 upgrade
ready for review Andreas Kohlbecker
08:05 PM Revision ae797143 (cdmlib): ref #7770 fixing layout issue and menu items active state and updatin...
Andreas Kohlbecker
07:42 PM Revision ef485f52 (cdmlib): #7770 documenting springfox-swagger-ui update process
Andreas Kohlbecker
07:09 PM Revision dac99c73 (cdmlib): ref #7779 applying Cdm specific changes to springfox-ui:
- preserving the modified index.hml as index-last.html
- creatng diffs with the changes applied last time
- a...
Andreas Kohlbecker
06:35 PM Revision 24e59406 (cdmlib): ref #7779 upgrading springfox-swagger-ui to 2.6.1 and preserving the ...
Andreas Kohlbecker
03:53 PM Revision 8ea0f81f (cdmlib): ref #7779 upgrading springfox-swagger-ui to 2.6.1 and preserving the ...
Andreas Kohlbecker
03:41 PM Revision 6140d10b (taxeditor): Remove unused class
Patrick Plitzner
03:41 PM Revision 04ee4c38 (taxeditor): Fix details editing for TermEditor
Patrick Plitzner
03:16 PM Revision f573f946 (taxeditor): revert changes in cellEditor of distribution editor
Katja Luther
03:11 PM feature request #7834 (Closed): taxonGraph search listing all included names implemented
controller endpoint:
~~~
/registrationDTO/findInTaxonGraph?taxonNameFilter={QUERYTEXT}&pageNumber={PAGEINDEX}'
~...
Andreas Kohlbecker
03:06 PM feature request #7834 (Resolved): taxonGraph search listing all included names implemented
Applied in changeset commit:cdmlib|f37e7436b7a5e7315fea12bf11bddfd41952a254. Andreas Kohlbecker
03:06 PM Revision f37e7436 (cdmlib): fix #7834 findInTaxonGraph implemented for Registrations with Registr...
Andreas Kohlbecker
02:52 PM Revision 6a534f27 (taxeditor): add button to select default source in distribution editor
Katja Luther
02:29 PM Revision c0f42391 (cdmlib): fix problems for taxEditor preferences
Katja Luther
02:16 PM Revision 819ee4a9 (cdm-dataportal): Code cleaning
Patrick Plitzner
12:39 PM Revision b9cade28 (cdm-dataportal): Evaluate preference for auto suggest in csv export module
Patrick Plitzner
10:30 AM Revision 68a31601 (taxeditor): improve termdeletion, show only a warning when term can not be del...
Katja Luther
09:51 AM Revision 43a34efe (cdmlib): ref #7345: add preferencePredicate for commonname references
Katja Luther
09:12 AM Revision fa9caef2 (taxeditor): use NewTaxEditorInstance for CdmPreferences in TaxEditor and fix r...
Katja Luther
09:06 AM Revision 9b6c1bf1 (cdmlib): restructure preference predicates and add newTaxeditorInstance to cdm...
Katja Luther

10/17/2018

09:55 PM task #7795 (Closed): untilis xml DataSets creation without "[NULL]" values
I havn't really tested, just looked at the code. Good we have changed it not. The NULL values are disturbing. Andreas Müller
05:03 PM bug #7835 (Closed): taxonGraph search block implemented
Andreas Kohlbecker
05:02 PM feature request #7834 (Closed): taxonGraph search listing all included names implemented
Andreas Kohlbecker
04:47 PM bug #7833 (Rejected): submitters can access see any registration in any RegistrationWorkingSet
Submitters can access any RegistrationWorkingSet where the registrations are all visible.
Registrations where the su...
Andreas Kohlbecker
04:20 PM bug #7832 (New): rename RegistrationStatus READY to COMPLETE
this change need also be adapted in cdm-vaadin where the `sass` files might also require to be modified accordingly. Andreas Kohlbecker
04:17 PM bug #7831 (Resolved): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when...
Applied in changeset commit:cdm-vaadin|db1db90169123bf1cb0ef824211fc0cdd6c33df0. Andreas Kohlbecker
01:02 PM bug #7831 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet name is not exluded when c...
Example:
Species *Navicula bahusiensis* being edited in TaxonNamePopupeditor with mode `VALIDATE_AGAINST_HIGHER_N...
Andreas Kohlbecker
04:17 PM Revision db1db901 (cdm-vaadin): fix #7831 excluding the current name from the WeaklyRelatedEntity...
Andreas Kohlbecker
04:16 PM Revision efc5d1e3 (cdmlib): ref #7831 adding name exlude filter to TaxonNamePartsFilter
Andreas Kohlbecker
03:55 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> The view configurations dialog does not disable buttons which are not available. Also "Done"...
Patrick Plitzner
03:54 PM feature request #7502: Add further columns to bulk editor
All the rest works very fine and is great new functionality!! Andreas Müller
03:53 PM feature request #7502: Add further columns to bulk editor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > The symbol still switches to label if if one sorts by a "protec...
Andreas Müller
03:53 PM feature request #7502: Add further columns to bulk editor
The view configurations dialog does not disable buttons which are not available. Also "Done" I would relabel to "Clos... Andreas Müller
03:52 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> The symbol still switches to label if if one sorts by a "protected" boolean field.
I have...
Patrick Plitzner
03:49 PM feature request #7502: Add further columns to bulk editor
Andreas Müller wrote:
> Question: does NAT support multi-sort? E.g. you want to sort first by protected or not prote...
Patrick Plitzner
03:47 PM feature request #7502: Add further columns to bulk editor
et al => et al. Andreas Müller
03:44 PM feature request #7502: Add further columns to bulk editor
Question: does NAT support multi-sort? E.g. you want to sort first by protected or not protected titleCache, second o... Andreas Müller
03:39 PM feature request #7502 (Feedback): Add further columns to bulk editor
The symbol still switches to label if if one sorts by a "protected" boolean field. Andreas Müller
03:48 PM Revision 9387c2d2 (taxeditor): ref #7502 Fix et al. label
Patrick Plitzner
03:47 PM Revision 2e23de44 (taxeditor): minor optimization
Patrick Plitzner
03:08 PM feature request #7345 (Feedback): [E+M] Common name references selectable in TaxEditor
The PreferencePredicate still seems to be missing so I can't review and functionality is not yet there.
If UI impl...
Andreas Müller
02:52 PM feature request #7809: Improve namerelationship handling in editor
It works now if English is chosen as language for representations. I had German installed. Andreas Müller
10:08 AM feature request #7809: Improve namerelationship handling in editor
still not available in nightly Andreas Müller
02:50 PM feature request #3990 (In Progress): [DISCUSS] How to implement citation suggestion to each taxon
Andreas Müller
02:49 PM feature request #3990 (Resolved): [DISCUSS] How to implement citation suggestion to each taxon
Andreas Müller
02:46 PM bug #7792 (Closed): Rendering of context menu of factual data view is super slow
It is much faster now and functionality still seems to work. So we can close the ticket. Andreas Müller
02:39 PM Revision d3feab7b (taxeditor): set specimen preference to true when editing the first time
Katja Luther
02:37 PM Revision f2efb095 (taxeditor): set specimen preference to true when editing the first time
Katja Luther
02:35 PM task #2406 (Closed): DeterminationEventElement is lacking references
Yes selecting the name is not so critical for now.
The new function works, ticket can be closed.
There is a mod...
Andreas Müller
02:34 PM Revision a2a58fcc (cdmlib): Add tax editor preferences utilities
Andreas Müller
02:00 PM bug #7830 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to test...
Andreas Kohlbecker
02:00 PM bug #7830 (Resolved): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to te...
Applied in changeset commit:cdm-vaadin|68cc664b0f005de9c2d20aa0b518074811d90ce9. Andreas Kohlbecker
12:55 PM bug #7830 (Closed): VALIDATE_AGAINST_HIGHER_NAME_PART specific epithet is not being reset to test...
For ranks below species when mode `VALIDATE_AGAINST_HIGHER_NAME_PART` is enabled the "specific epithet" field restric... Andreas Kohlbecker
02:00 PM Revision 68cc664b (cdm-vaadin): fix #7830 fixing WeaklyRelatedEntityCombobox reset to textfield f...
Andreas Kohlbecker
01:44 PM Revision 9f73bcfe (taxeditor): Fix potential NPE
Patrick Plitzner
01:36 PM Revision 362c07ab (taxeditor): ref #6554 Set initial expansion state
Patrick Plitzner
12:39 PM Revision 3b82f2c7 (cdmlib): ref #7791 adding CORS headers to TaxonGraphService method
Andreas Kohlbecker
12:39 PM Revision 388fc07c (cdmlib): ref #7648 fixing bugs related to single taxa per graph and updating r...
Andreas Kohlbecker
12:37 PM Revision 1717c91b (taxeditor): minor changes in factual data menu
Katja Luther
11:45 AM feature request #2444 (Closed): Disable binom and trinom hybrid flag when epithets are not available
Seems to work Andreas Müller
11:43 AM feature request #7775: Factual Data label issue
If reference selection dialog is canceled a new description is created, however AND an empty source is created.
Bo...
Andreas Müller
11:39 AM feature request #7775 (Feedback): Factual Data label issue
> If a source is added in the details view, and the titleCache is not protected, it should be generated into the labe... Andreas Müller
11:37 AM Revision 15aa0a1c (taxeditor): ref #6554 Fix initial expansion state
Patrick Plitzner
11:31 AM Revision 97c5aaf3 (taxeditor): Increase max length for factual data label provider
Patrick Plitzner
10:46 AM feature request #7660 (Feedback): Indicate the row state in a NAT table via symbols
This is generally fixed and can be closed. But there are 2 open issues.
* The symbol for "set target" is blue and...
Andreas Müller
10:43 AM Revision 8544e2d4 (taxeditor): minor
Katja Luther
10:37 AM feature request #7793: Master ticket for E+M editor issues
Now the New command in Factual Data View is on top, but in parallel we have "New Factual Data Set" and "New Factual D... Andreas Müller
10:24 AM Revision fe3f1c66 (taxeditor): ref #7793 rename English command for Move Factual Data to Other Ta...
Andreas Müller
09:54 AM bug #7773 (Closed): when changing rank the hybrid section is empty
Seems to be fixed. Andreas Müller
07:37 AM Revision 96e2a5dc (taxeditor): Change label for "et al" column in agent bulk editor
Patrick Plitzner

10/16/2018

06:05 PM Revision 1c4a145c (cdmlib): ref #7829 ref #7800 remove nomenclaturallyRelevant from Reference mat...
Andreas Müller
06:02 PM bug #7829 (In Progress): Improve deduplication of parsed names and references
Andreas Müller
06:01 PM bug #7829 (In Progress): Improve deduplication of parsed names and references
The default matching strategies are to strict for data name and nom. ref. data created by a parser. Also there are so... Andreas Müller
05:52 PM Revision 517ecf1f (cdmlib): ref #7800 add specific subclass matching to matching strategies
Andreas Müller
05:51 PM bug #7828 (In Progress): Remove date published from journals in E+M
>1200 journals from the initial import in 2004 do have a date published. Journals generally should not have a date pu... Andreas Müller
05:49 PM Revision c7a433e1 (cdmlib): cleanup
Andreas Müller
05:45 PM Revision ae79d763 (cdmlib-apps): ref #7420 latest changes to PhycobankActivator
Andreas Müller
03:28 PM Revision 84f5eea0 (taxeditor): ref #7063: fix NPE in distribution editor
Katja Luther
03:22 PM bug #7827 (Closed): LazyInitializationException when saving term editor (named areas)
This happens when dragging a term on at least level 2 to another term on at least level 2
~~~ text
login : admin
...
Katja Luther
02:24 PM Revision f53701cb (taxeditor): ref #7063: fix NPE in local preferences
Katja Luther
02:10 PM Revision 67b5b870 (taxeditor): missing english label
Katja Luther
02:06 PM bug #7826: NPE after saving groupbulkeditor
please review Katja Luther
02:05 PM bug #7826 (Resolved): NPE after saving groupbulkeditor
Applied in changeset commit:taxeditor|782e447962cac9eef6e2e7f9c1a394ad8657c1c8. Katja Luther
01:38 PM bug #7826 (Closed): NPE after saving groupbulkeditor
~~~ text
!ENTRY org.eclipse.core.jobs 4 2 2018-10-16 13:37:28.658
!MESSAGE An internal error occurred during: "Lade...
Katja Luther
02:05 PM Revision 782e4479 (taxeditor): fix #7826: change service for loading entity
Katja Luther
01:36 PM bug #7699: NPE when searching for specimen in bulk editor
I also had it today in the Users Bulkeditor:
~~~
login :
editor version : 5.4.0.201810151448
server : ()
sch...
Andreas Kohlbecker
01:07 PM Revision 8ce2c6bd (taxeditor): ref #3989: add preferred vocs to named area selection dialog
Katja Luther
12:40 PM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
in admin preferences now there is the possibility to define the vocabularies for common name area selection, distribu... Katja Luther
12:38 PM feature request #7283: Improvements for alternative identifier search
the search for identifier and titleCache is implemented as well. Katja Luther
12:36 PM Revision 032bbbac (cdmlib): code cleaning
Katja Luther
12:11 PM Revision 6c029f30 (taxeditor): ref #7283: minor
Katja Luther
11:54 AM Revision c459863f (cdmlib): ref #7283: add service method to search for identifier and titleCache
Katja Luther
11:38 AM Revision 305c1b35 (taxeditor): ref # #7283: add preference to configure search for identifier
Katja Luther
09:30 AM Revision 8ce2d72b (taxeditor): ref #7809: change order of inverse label and label of the namerela...
Katja Luther
09:19 AM feature request #7809: Improve namerelationship handling in editor
jenkins failed because of download problems, but the nightly build of this night contains the implementation, now. Katja Luther
09:06 AM feature request #7809 (Feedback): Improve namerelationship handling in editor
In yesterday evenings nightly the invers direction still is not available so I can't test. Andreas Müller

10/15/2018

07:08 PM bug #7825 (New): NPE in eu.etaxonomy.taxeditor.bulkeditor.input.sortprovider.GroupNameComparator ...
after editing the Group "Curator" in edit-test/phycobank
~~~
login :
editor version : 5.4.0.201810151448
serve...
Andreas Kohlbecker
05:05 PM Revision ee370389 (taxeditor): ref #7589 Adapt to service layer changes
Patrick Plitzner
05:05 PM Revision 0848df46 (cdmlib): ref #7589 Move long running task to corresponding service
- this solves the deadlocks when opening the matrix editor Patrick Plitzner
05:05 PM Revision 412ba757 (cdmlib): ref #7589 Remove auto creation of default description
Patrick Plitzner
05:05 PM Revision a3141e13 (cdmlib): ref #7589 Fix transactional annotations
Patrick Plitzner
04:43 PM feature request #7809 (Resolved): Improve namerelationship handling in editor
please review. I adapted the wizard like it is descriped in ticket description. Maybe the text should be different?? Katja Luther
04:41 PM Revision f9328c66 (taxeditor): ref #7809: adapt namerelationship wizard
Katja Luther
04:04 PM Revision 74389de2 (taxeditor): ref #7793: smaller chenges in factual data context menu
Katja Luther
04:02 PM Revision 85ad5f88 (taxeditor): ref #7809: namerelationshiptypes should be shown in both directions
Katja Luther
03:47 PM Revision 67bf2db8 (cdm-vaadin): ref #7785 preliminary commit
Andreas Kohlbecker
03:47 PM Revision 3b278eb0 (cdm-vaadin): ref #7785 using CdmTransientEntityAndUuidCacher to promote using ...
Andreas Kohlbecker
03:45 PM feature request #7800 (In Progress): Parse preliminary RefDetails
Andreas Müller
03:44 PM feature request #7801 (In Progress): AM: Deduplicate references
Andreas Müller
12:55 PM task #7785: CdmUserHelper caches permission information
Implemented and description updated. Andreas Kohlbecker
12:05 PM task #7785 (Resolved): CdmUserHelper caches permission information
Applied in changeset commit:cdmlib|8bbd4f27e47a00d244480b4f5a01056d415bda27. Andreas Kohlbecker
12:04 PM Revision 8bbd4f27 (cdmlib): fix #7785 CdmUserHelper can use ICdmEntityUuidCacher to avoid loading...
- inner class CachingCdmUserHelper to be used when CdmUserHelper.withCache() is called
- ICdmEntityUuidCacher and...
Andreas Kohlbecker
11:56 AM Revision 97315e05 (taxeditor): minor
Katja Luther
11:55 AM Revision 2a4b0092 (taxeditor): ref #7793: show supplemental data for distribution editor and smal...
Katja Luther
10:14 AM Revision fae291ad (taxeditor): Remove unused dependency
Patrick Plitzner
10:14 AM Revision ae328426 (taxeditor): Use image resources for button image
Patrick Plitzner
10:14 AM Revision 487ef756 (taxeditor): ref #7674 Add icon for different description types
Patrick Plitzner
09:51 AM Revision 25b69c4e (taxeditor): import/export should not be shown whithout connection
Katja Luther

10/14/2018

08:09 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
Andreas Müller wrote:
> * the eu.etaxonomy.taxeditor.remoting.cache.ConversationalTransientEntityCacher transform...
Andreas Kohlbecker
07:45 PM bug #7824 (Resolved): PopupViewRegistration not removing registered views causes memleak
Applied in changeset commit:cdm-vaadin|bba202394eb654dfbdba5a8e7feeda461635157e. Andreas Kohlbecker
07:16 PM bug #7824 (Closed): PopupViewRegistration not removing registered views causes memleak
The PopupViewRegistration registers `ApplicationView`s and PopupViews. Alt least the `ApplicationView` are not remove... Andreas Kohlbecker
07:44 PM Revision bba20239 (cdm-vaadin): fix #7824 cleaning up maps in PopupViewRegistration when views ar...
Andreas Kohlbecker
02:57 PM feature request #7801: AM: Deduplicate references
Find deduplicated records in CDM
~~~ sql
SELECT osb.id, ref.id, osb.idInSource, osb.idNamespace, ref.refType, ref...
Andreas Müller
02:56 PM Revision aecf2600 (cdmlib-apps): ref #7823 implement user.person deduplication
Andreas Müller
02:56 PM bug #7823 (In Progress): User Persons are not deduplicated
Andreas Müller
02:55 PM bug #7823 (Resolved): User Persons are not deduplicated
Persons related to users are often the same as they are only for different sec's.
We may want to deduplicate them....
Andreas Müller
02:53 PM Revision 6943d396 (cdmlib-apps): ref #7799 deduplicate and parse authorteams
Andreas Müller
02:52 PM Revision db652f5c (cdmlib-apps): ref #7801 and ref #3787 deduplicate reference.authorstring and r...
Andreas Müller
02:49 PM Revision f6275b1f (cdmlib): ref #7801 unify cache initialization in deduplicationHelper
Andreas Müller
02:48 PM Revision 96741cad (cdmlib): cleanup
Andreas Müller
09:45 AM Revision 3f3714e3 (cdmlib): ref #7799 compute author caches in deduplicationHelper
Andreas Müller

10/13/2018

07:10 AM Revision 321b9521 (taxeditor): ref #7793: fix problem with details view after save in distributio...
Katja Luther

10/12/2018

10:43 PM task #7758: Manual cleanup after E+M import
Clean up Agent duplicates:
~~~ sql

SELECT osb.id, ab.id, ab.DTYPE, osb.idInSource, osb.idNamespace, ab.titleC...
Andreas Müller
10:25 PM bug #7814 (Resolved): Section in Name and section in Basionym, usability
Applied in changeset commit:cdm-vaadin|23cee55fd9f05d189974daa67201c0f552c216d3. Andreas Kohlbecker
10:22 PM Revision 23cee55f (cdm-vaadin): fix #7814 CdmEditor not readlony with un-persisted entities and h...
Andreas Kohlbecker
06:49 PM Revision 52df026c (cdm-vaadin): ref #7630 fixing creation of blocking relations - removing old p...
Andreas Kohlbecker
06:35 PM Revision 886e3f27 (cdmlib): ref #7648 avoiding NPE during equality check in TaxonGraphBeforeTrans...
Andreas Kohlbecker
06:12 PM Revision 644bd633 (cdmlib): ref #7648 adding links to the ticket as preliminary rudimentary docum...
Andreas Kohlbecker
06:10 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
now the expected functionality I implemented, but we could think about refactoring the `TaxonGraphHibernateListener` ... Andreas Kohlbecker
05:52 PM Revision c621e94f (cdm-vaadin): ref #7648 using runAsAuthenticator for RunAsAdmin to configure Ta...
Andreas Kohlbecker
05:38 PM Revision ee7aab02 (cdmlib): ref #7709 fixing missing runAsAuthenticator for RunAsAdmin, TaxonGrap...
Andreas Kohlbecker
04:57 PM Revision 6623206c (cdmlib): ref #7709 adding missing @CdmHibernateListener config annotation to a...
Andreas Kohlbecker
04:34 PM bug #7822 (Duplicate): RegistrationUI potentially causes memory problems or deadlocks
Currently users complain about very slow response time of the edit-production server.
In order to verify the presu...
Andreas Kohlbecker
03:59 PM Revision dea7d769 (taxeditor): Fix saving of FeatureTreeEditor
Patrick Plitzner
02:31 PM Revision cf26134d (taxeditor): Fix possible ClassCastException
Patrick Plitzner
01:58 PM bug #7818: TaxonRelationshipsDTOTest leaves test environment in unpredictable state
> Also the TermLoader has an unloadAllTerms method. We could call this in the AfterClass method, but ONLY if the term... Andreas Kohlbecker
01:44 PM Revision 6ec42fab (cdm-vaadin): ref #7648 adapting CdmVaadinConfiguration to changes in the Taxon...
Andreas Kohlbecker
01:23 PM Revision 8a790929 (cdmlib): ref #7709 adding REGISTRATION to ClearDBDataSet.xml to solve test pro...
Andreas Kohlbecker
01:23 PM Revision 7df5025d (cdmlib): removing useless annotation
Andreas Kohlbecker
01:13 PM Revision 8d2b7d49 (cdmlib): ref #7793: add preferencePredicates for taxeditor
Katja Luther
12:28 PM Revision 6c5e8c9a (cdmlib): cleanup
Andreas Müller
11:26 AM Revision 469b75d0 (cdm-server): ref #7085 Adjust log path
Patrick Plitzner
11:16 AM Revision 9672401c (cdmlib): ref #7709 JUnit testsuite to reproduce the test failure when running ...
Andreas Kohlbecker
11:15 AM feature request #7821 (New): Use log4j2 for cdmserver logging to avoid having a separate cron job...
Have a look at:
https://logging.apache.org/log4j/2.x/manual/appenders.html#RollingFileAppender
In this case an ...
Patrick Plitzner
11:06 AM bug #6287 (Closed): Rolling cdmserver.log file only contains entries from startup phase
This is fixed by fixing #7085 Patrick Plitzner
11:03 AM bug #7085 (Resolved): cdmserver logfiles getting too big, use DailyRollingFileAppender
The logging is now configured to daily logging i.e. every day a new log file is generated.
The change was done man...
Patrick Plitzner
11:03 AM feature request #7820 (New): Add cron job for deleting cdmserver log files after a specified time...
By fixing #7085 the log files are now generated on a daily base. A cron job should delete the old log files, e.g. aft... Patrick Plitzner
10:58 AM feature request #7819 (New): Log4j.properties file is not properly packaged by the cdmserver inst...
Changes applied to the log4j.properties file in the cdm-server project resources are not reflected in the installed c... Patrick Plitzner
10:47 AM Revision 04656595 (cdm-server): ref #7085 Set logging to daily rollover
Patrick Plitzner
10:24 AM feature request #7793 (In Progress): Master ticket for E+M editor issues
Katja Luther
10:24 AM Revision 3d9956a8 (taxeditor): ref #7793: smaller changes in original sources part
Katja Luther
10:16 AM Revision 05a6f11d (taxeditor): ref #7793: add preference for show taxonnode wizard
Katja Luther
10:09 AM Revision 8c2c3497 (cdmlib): cleanup
Andreas Müller
09:25 AM Revision b154ea92 (cdmlib-apps): include filtered authors in E+M import
Andreas Müller
09:23 AM Revision 274e96c0 (cdmlib-apps): #7799 reduce duplicated sources
Andreas Müller
09:19 AM Revision 8794602e (cdmlib-apps): improve performance for author loading in E+M
Andreas Müller
09:18 AM Revision 72c3d333 (cdm-server): ref #7085 Adjust log path
Patrick Plitzner
09:08 AM task #7796 (In Progress): [CHECK] Handle Bibliography Name Facts correctly
Andreas Müller
09:07 AM Revision 52e6e4b5 (cdmlib-apps): ref #7796 remove ILDIS Bibliographie NameFacts from E+M import
Andreas Müller

10/11/2018

09:39 PM bug #7818: TaxonRelationshipsDTOTest leaves test environment in unpredictable state
There are multiple possibilities.
The simplest is to add a logger saying that this test should not run as first whi...
Andreas Müller
06:30 PM bug #7818 (Feedback): TaxonRelationshipsDTOTest leaves test environment in unpredictable state
Andreas Kohlbecker
04:04 PM bug #7818 (Feedback): TaxonRelationshipsDTOTest leaves test environment in unpredictable state
as stated in #7648#note-14 the `TaxonRelationshipsDTOTest` causes problems for other tests.
e.g.: Running the foll...
Andreas Kohlbecker
06:39 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
The problem described in #7818 was not the actual cause for the test failing in the full suite, another candidate is ... Andreas Kohlbecker
04:08 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Since this is not a problem with the `TaxonGraphHibernateListenerTest` I am creating a new issue: #7818 Andreas Kohlbecker
03:10 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
After moving the `TaxonGraphHibernateListenerTest` into `cdmlib-services` we are again facing problems with test bein... Andreas Kohlbecker
05:13 PM Revision b78e167b (cdm-server): Revert "ref #7085 Use DailyRollingFileAppender (in code)"
This reverts commit 02ef1e472669c30153c94f27084bde7e85e9482b. Patrick Plitzner
04:57 PM Revision 02ef1e47 (cdm-server): ref #7085 Use DailyRollingFileAppender (in code)
Patrick Plitzner
04:43 PM Revision 99c113d2 (cdm-server): ref #7085 Use DailyRollingFileAppender to generate one log per day
Patrick Plitzner
04:24 PM Revision e7c1c8fa (cdmlib): Change system.out to log.info()
Patrick Plitzner
02:01 PM Revision 83f2186a (taxeditor): ref #7793: adapt taxonnode wizard and add menu item to set exclude...
Katja Luther
01:31 PM Revision 4443b90a (taxeditor): ref #7793: adapt taxonnode wizard and add menu item to set unplace...
Katja Luther
12:07 PM Revision e8bf913b (taxeditor): missed fragment.e4xmi for bulk editor
Katja Luther
11:45 AM bug #7817 (New): Team caches should not show '& al.'
If a team is fully defined with all members of the team the caches should not show "at al." if the team is larger the... Andreas Müller
11:24 AM Revision f97f57f1 (taxeditor): set default for SHOW_SPECIMEN preference to true
Katja Luther
10:14 AM feature request #7799: AM: Parse authorteams
Useful scripts
~~~ sql
DECLARE @authorId as int;
Set @authorId = 3395
;
SELECT *
FROM Name n INNER JOIN dbo...
Andreas Müller
09:07 AM Revision f528c666 (cdmlib): ref #7648 free configurable TaxonGraphHibernateListener ready
Andreas Kohlbecker

10/10/2018

06:02 PM Revision 48e27c57 (cdmlib): ref #7648 moving TaxonGraphHibernateListener and related classes into...
Andreas Kohlbecker
05:51 PM Revision fb8a4982 (cdmlib): fixing usage of wrong logger in RunAsAuthenticator
Andreas Kohlbecker
05:51 PM Revision f7df0b93 (cdmlib): ref #7648 TaxonGraphHibernateListener as Spring bean configured via t...
Andreas Kohlbecker
05:51 PM Revision 134e39f0 (cdmlib): sanitizing contoller method doGetIncludedTaxa
Andreas Kohlbecker
03:37 PM Revision 69be3e73 (taxeditor): ref #7793: add preference to hide all specimen related issues
Katja Luther
02:47 PM Revision 87cbb479 (cdmlib): ref #7793: preferencePredicate for mediaview and checklist perspective
Katja Luther
02:01 PM Revision cc4e78d1 (taxeditor): ref #7793: add preference to set checklist perspective as default
Katja Luther
01:58 PM feature request #7648 (Feedback): Create taxonrelation to genus or species when subordinate names...
The `RunAsAuthenticator` is in cdmlib-service and `TaxonGraphBeforeTransactionCompleteProcess` in cdmlib-persistence.... Andreas Kohlbecker
01:49 PM feature request #7648 (In Progress): Create taxonrelation to genus or species when subordinate na...
The taxon graph management processes are currently run in with the current authentication, this causes problems if a... Andreas Kohlbecker
12:54 PM Revision 1ff3a9d2 (cdmlib-apps): cleanup
Andreas Müller
12:53 PM Revision 31e71264 (cdmlib-apps): ref #7799 improve performance of authorteam loading
Andreas Müller
12:52 PM Revision a5e9dc2f (cdmlib-apps): ref #7799 and others reinstall null check
Andreas Müller
12:52 PM Revision 5d979b5d (cdmlib-apps): add euromed production to activator
Andreas Müller
12:51 PM Revision 14295b4b (cdmlib-apps): ref #7798 implement and improve occurrence.nameUsedInSource impo...
Andreas Müller
12:48 PM Revision 640d8847 (cdmlib-apps): split occurrence and occurrence source import
Andreas Müller
12:45 PM Revision 14ec817b (cdmlib-apps): ref #7800 parse preliminary RefDetails (first start)
Andreas Müller
12:38 PM Revision f4b9ac06 (cdmlib-apps): ref #7799 implement author parsing for AuthorTeam and Reference....
Andreas Müller
12:35 PM Revision 4f033523 (cdmlib-apps): cleanup
Andreas Müller
12:17 PM Revision 449cd4da (cdmlib-apps): ref #7346 create areas only if vocabulary does not yet exist
Andreas Müller
12:03 PM bug #7813 (Duplicate): Basionym without journal
Andreas Kohlbecker
10:32 AM Revision 41b21192 (cdmlib-apps): add euromed production to destinations
Andreas Müller
10:30 AM Revision 1b9b7bfd (cdmlib): ref #7799 handle initials for teamOrPerson.getFullTitle
Andreas Müller
10:30 AM Revision c277d1a7 (cdmlib): ref #7799 handle protected titlecache for teamOrPerson.getFullTitle
Andreas Müller
10:30 AM Revision d6fcab17 (cdmlib): cleanup
Andreas Müller
10:06 AM Revision 38029748 (taxeditor): Merge branch 'develop' into detailsViewCache
Patrick Plitzner
09:45 AM task #7816 (New): Handle nomStatus references correctly
In E+M most nomenclatural status have a reference. In most cases it is one of the references 7000000, 7100000, 720000... Andreas Müller
09:27 AM Revision 0e786079 (taxeditor): minor
Katja Luther
09:14 AM Revision 0211eb37 (cdmlib): add new preferencePredicates
Katja Luther
08:53 AM Revision 329e699e (taxeditor): Merge branch 'develop' into detailsViewCache
Patrick Plitzner
08:42 AM task #7785: CdmUserHelper caches permission information
Answer is in the updated description. Andreas Kohlbecker

10/09/2018

06:26 PM task #7785: CdmUserHelper caches permission information
Can you define what functionality is exactly needed from the CdmTransientEntityCacher and why #7709 needs to be fixed... Andreas Müller
05:58 PM bug #7222: Phycobank UI improve labels
To "Start a new registration process either for a name or typification."
Suggestion:
* "Start registering scien...
Andreas Kohlbecker
05:54 PM bug #7222: Phycobank UI improve labels
This issue is almost complete, please see the two open TODOs in the issue description. Andreas Kohlbecker
05:51 PM task #7796: [CHECK] Handle Bibliography Name Facts correctly
ERS: probably not to be imported at all Andreas Müller
05:40 PM feature request #7815 (New): TaxonNameEditor: Hint user on missing citation detail for nomenclatu...
Reference detail, wenn NULL bei Speicherversuch: warning “Please insert the reference page and of figure of the nomen... Andreas Kohlbecker
05:32 PM Revision d98b71cb (cdm-vaadin): ref #7222 modifying the text on nomRef sub sections
Andreas Kohlbecker
05:27 PM Revision b378fe05 (cdm-vaadin): ref #7222 removing the 'Hint:' line in TaxonNameEditor
Andreas Kohlbecker
03:40 PM feature request #7799 (In Progress): AM: Parse authorteams
Andreas Müller
03:18 PM Revision 3b975922 (taxeditor): ref #7793: add DB preferences to hide specimen and import issues a...
Katja Luther
02:58 PM Revision 81641aab (taxeditor): Fix possible IOOB exception
Patrick Plitzner
02:00 PM bug #7814: Section in Name and section in Basionym, usability
Es funktioniert nur die erste Version, die für User etwas fehlerhaft wirkt.
Ich kann bei der Basionym-Referenz mit...
Wolf-Henning Kusber
01:23 PM bug #7814: Section in Name and section in Basionym, usability
2. Screenshot sollte zeigen:
You, Q. & Kociolek, J.P. - in You, Q., Kociolek, J.P. & Wang, X., New Gomphoneis Cleve ...
Wolf-Henning Kusber
01:22 PM bug #7814 (Closed): Section in Name and section in Basionym, usability
Bedienungsfehler möglich, wenn neuer Name und Basionym jeweils eine In-Zitierung haben.
Vorgehen: Referenz eingebe...
Wolf-Henning Kusber
12:55 PM bug #7813 (Duplicate): Basionym without journal
When a new name has a basionym, the basionym reference can be selected or be new.
If the reference is a new article ...
Wolf-Henning Kusber
 

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