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From 11/08/2018 to 12/07/2018

12/07/2018

04:20 PM Revision 3cbea5bb (cdmlib-apps): E+M latest changes to taxon relations import
Andreas Müller
04:20 PM Revision c7178a2e (cdmlib-apps): Handle Willing, E as artist for media
Andreas Müller
04:20 PM Revision 7aeff4a9 (cdmlib-apps): E+M use uuids for Authors, Teams and references
Andreas Müller
04:20 PM Revision 1a63486c (cdmlib-apps): E+M latest changes to name import (mostly for unparsed refdetail...
Andreas Müller
04:20 PM Revision 07f242db (cdmlib-apps): minor
Andreas Müller
03:56 PM Revision a41e78d9 (cdmlib-apps): Adapt to coding convention
Patrick Plitzner
03:13 PM Revision 713cacdb (cdmlib-apps): Fix multiple vocabulary generation
Patrick Plitzner
03:01 PM Revision 43c3f7df (cdmlib-apps): Fix db connection
Patrick Plitzner
02:26 PM Revision 66768fff (cdmlib-apps): Add plant glossary import
Patrick Plitzner
02:12 PM bug #7943 (In Progress): TypeDesignationsEditor Select Reference for figure
it is not clear why this problem exists for the reference combobox and not for the collection combobox. Both are impl... Andreas Kohlbecker
12:04 PM bug #7943 (In Progress): TypeDesignationsEditor Select Reference for figure
Double selection of a reference needed to be saved as reference of a figure (Release & Test)
First selection of a ...
Wolf-Henning Kusber
02:08 PM Revision b6b666d7 (cdm-vaadin): ref #7943 removing duplicate assignment of RelatedEntityButtonUpd...
Andreas Kohlbecker
02:04 PM bug #7245 (Closed): validation of ToOneRelatedEntityCombobox not working
Tested:
Name can not be saved without a referene, warning is fine.
No problems.
Wolf-Henning Kusber
01:25 PM Revision e3e487e3 (taxeditor): ref #7923 Set character representation during creation
Patrick Plitzner
01:25 PM Revision 0c625cd1 (taxeditor): ref #7923 Show character combination during drag&drop
Patrick Plitzner
01:25 PM Revision e12ddaf5 (taxeditor): ref #7939: adapt TaxonNavigator to moved comparator
Katja Luther
01:25 PM Revision 83fc192e (taxeditor): ref #7589 Only add characters as matrix columns
Patrick Plitzner
01:25 PM Revision ddc509bc (taxeditor): ref #6774 Add owl export to feature tree editor context menu
Patrick Plitzner
01:25 PM Revision 9a212770 (taxeditor): ref #6774 Rename export handler
Patrick Plitzner
01:25 PM Revision c2849ea1 (taxeditor): Fix potential NPE
Patrick Plitzner
01:25 PM Revision a4063890 (taxeditor): ref #7923 Use character transfer instead of LocalSelectionTransfer
Patrick Plitzner
01:25 PM Revision fd79a16f (taxeditor): Clear candidates and target when saving + minor refactoring
Patrick Plitzner
01:03 PM task #7918 (Feedback): Revision of reference type specific properties
this should be complete now except of the fact that ISection inherits datePublished from IWithAuthorAndDate, which ma... Andreas Kohlbecker
01:01 PM Revision b62ebf52 (taxeditor): ref #7939: adapt TaxonNavigator to moved comparator
Katja Luther
01:01 PM Revision cfb05c06 (cdmlib): ref #7918 harmonizing ReferencePropertyDefinitions with latest change...
Andreas Kohlbecker
12:08 PM Revision 45cac117 (cdmlib): ref #7939: add oderInderComnparator and use it in taxonnodeDtoRankAnd...
Katja Luther
12:04 PM feature request #7942 (In Progress): SpecimenTypeDesignationEditor: Explanation on why editor can...
Andreas Kohlbecker
12:03 PM feature request #7942: SpecimenTypeDesignationEditor: Explanation on why editor can not be saved ...
We agreed on using the required flag of the "Type status", "Kind of unit" field ("Collection", "Accession number" mus... Andreas Kohlbecker
11:34 AM feature request #7942: SpecimenTypeDesignationEditor: Explanation on why editor can not be saved ...
Den zweiten Text verstehe ich sprachlich nicht.
proposed wording: "Typedesignation editor can not be saved without...
Wolf-Henning Kusber
11:26 AM feature request #7942 (Feedback): SpecimenTypeDesignationEditor: Explanation on why editor can no...
We have two options:
1. Show a message in the footer of the editor as long as the save button is blocked: "Editor ...
Andreas Kohlbecker
11:20 AM feature request #7942 (Closed): SpecimenTypeDesignationEditor: Explanation on why editor can not ...
Das Speichern eines TypedesignationWorkingsets geht erst wenn mind. ein Type angelegt ist.
Andernfalls würde die Sp...
Andreas Kohlbecker
12:03 PM Revision 1312cd94 (cdmlib): Dto classes for distribution editor
Katja Luther
11:26 AM feature request #7937 (Closed): TaxoNamePopupEditor: Exclude current name from name relationship ...
Wolf-Henning Kusber
11:22 AM feature request #7937: TaxoNamePopupEditor: Exclude current name from name relationship comboboxes
tested for validation: ok
tested for replaced synonym: ok
tested for basionym: ok
Wolf-Henning Kusber
11:17 AM feature request #6869 (Closed): Reference editor: Advanced mode only available for curators
Test: reference in preparation can be changed by the submitter and curator
Reference by admin or curator can be chan...
Wolf-Henning Kusber
09:24 AM Revision 0c523381 (taxeditor): continuing work on NAT tables for distribution editor
Katja Luther

12/06/2018

08:33 PM feature request #6869: Reference editor: Advanced mode only available for curators
please review once test-server is updated Andreas Kohlbecker
08:32 PM feature request #6869 (Resolved): Reference editor: Advanced mode only available for curators
Applied in changeset commit:cdm-vaadin|2ef98d3ee5667951a9c7402fa6b963e949125d9d. Andreas Kohlbecker
08:32 PM Revision 2ef98d3e (cdm-vaadin): fix #6869 ReferencePopupEditor: only admins and curation are allo...
Andreas Kohlbecker
04:58 PM feature request #7937: TaxoNamePopupEditor: Exclude current name from name relationship comboboxes
please review once test-server is updated Andreas Kohlbecker
04:58 PM feature request #7937 (Resolved): TaxoNamePopupEditor: Exclude current name from name relationshi...
Applied in changeset commit:cdm-vaadin|1f016f085dbd0429382f8fb393ac53c81ed4a04b. Andreas Kohlbecker
04:58 PM Revision 1f016f08 (cdm-vaadin): fix #7937 excluding current name from name relation selects
Andreas Kohlbecker
04:39 PM bug #7245: validation of ToOneRelatedEntityCombobox not working
Please review once the test-server is updated Andreas Kohlbecker
04:37 PM bug #7245 (Resolved): validation of ToOneRelatedEntityCombobox not working
Applied in changeset commit:cdm-vaadin|98a2455f3da2841496b415bc1f402515a6e0b034. Andreas Kohlbecker
04:37 PM Revision 98a2455f (cdm-vaadin): fix #7245 fixing validation of ToOneRelatedEntityCombobox and re-...
Andreas Kohlbecker
11:10 AM bug #7941 (Closed): Deduplication does not work in new taxon dialog
When creating a new taxon including nomenclatural reference via new taxon dialog the data is saved but it seems not t... Andreas Müller
10:59 AM bug #7940 (Feedback): "New" menu in navigator not available for certain users
g.fassou in caryo_spp had often (always ?) the problem that "new" did not show up. The taxon node she was working wit... Andreas Müller
10:53 AM bug #7939 (Closed): TaxonNodeDTO need sortIndex of Rank
To avoid a DB call for comparing the ranks of two TaxonNodeDTOs the sortIndex of the rank needs to be part of the DTO... Katja Luther
10:15 AM Revision e4ce2709 (taxeditor): ref #7923 Show character combination during drag&drop
Patrick Plitzner
10:05 AM Revision c872869c (taxeditor): ref #7923 Set character representation during creation
Patrick Plitzner
08:55 AM bug #7938: cdmserver sub-processes (threads) with constant high cpu
[Comment on bug report]:
Hi Andreas Kohlbecker,
Thanks for reporting this incident to Oracle.
This is with r...
Andreas Kohlbecker
08:53 AM bug #7938: cdmserver sub-processes (threads) with constant high cpu
[Answer vom Oracle:]
Dear Java Developer,
We have finished evaluating your report and have assigned it a Bug ID...
Andreas Kohlbecker

12/05/2018

05:06 PM bug #7938: cdmserver sub-processes (threads) with constant high cpu
I filed a bug report to oracle:
"We will review your report and have assigned it an internal review ID : 9058426. ...
Andreas Kohlbecker
01:41 PM bug #7938: cdmserver sub-processes (threads) with constant high cpu
The cdm-server is running as subprocess of `jsvc` can this be a reason for the observed problem? Andreas Kohlbecker
11:58 AM bug #7938 (New): cdmserver sub-processes (threads) with constant high cpu
This performance problem was observed at the edit production server but might also affect other installations.
Use...
Andreas Kohlbecker
02:02 PM Revision d1dd048b (taxeditor): ref #6774 Rename export handler
Patrick Plitzner
01:29 PM task #7921 (Closed): Create database for Caucasus distribution editing
Andreas Müller
01:29 PM task #7921: Create database for Caucasus distribution editing
Logfile:
~~~
14:08:44,013 INFO ResultSetPartitioner:153 - Saved 85 Authors
14:10:03,343 WARN BerlinModelAuthor...
Andreas Müller
01:20 PM Revision 8e4eddeb (taxeditor): build layers for distribution editor
Katja Luther
11:26 AM feature request #6774 (In Progress): Implement OWL export
Patrick Plitzner
11:26 AM Revision 8315bf09 (taxeditor): ref #6774 Add owl export to feature tree editor context menu
Patrick Plitzner
11:13 AM Revision 6846dba7 (cdmlib): ref #6774 Fix owl export file generation
Patrick Plitzner

12/04/2018

03:38 PM Revision 353bb041 (taxeditor): ref #7589 Only add characters as matrix columns
Patrick Plitzner
03:23 PM Revision ecf88434 (taxeditor): Fix potential NPE
Patrick Plitzner
01:21 PM feature request #7937 (Closed): TaxoNamePopupEditor: Exclude current name from name relationship ...
Andreas Kohlbecker
12:14 PM task #7935: Discuss new solution to establish the communication between submitter and curator
curation@phycobank.org wäre noch besser Andreas Kohlbecker
12:13 PM task #7935: Discuss new solution to establish the communication between submitter and curator
[Henning]
Normaler Weise würde man auf normalen E-Mail-Kontakt ausweichen und eine Funktions-Email einrichten, z.B...
Andreas Kohlbecker
12:02 PM task #7935 (Closed): Discuss new solution to establish the communication between submitter and cu...
As stated in #7785 the checking for messaged in the Redmine instance serving as communication hub slows down the disp... Andreas Kohlbecker
12:12 PM bug #7908 (Closed): Redmine communication hub slows down RegistrationWorkingSets
all open issues and tasks copied to other tickets. Andreas Kohlbecker
12:11 PM bug #7936 (New): Consider complete removal of redmine communication hub code
As stated in #7785 the checking for messaged in the Redmine instance serving as communication hub slows down the disp... Andreas Kohlbecker
10:17 AM Revision 53b63498 (taxeditor): ref #7923 Use character transfer instead of LocalSelectionTransfer
Patrick Plitzner
10:11 AM Revision 5b204e01 (taxeditor): Merge branch 'develop' into characterTransfer
Patrick Plitzner
10:08 AM Revision 51771c44 (taxeditor): ref #7923 Use character transfer instead of LocalSelectionTransfer
Patrick Plitzner
09:23 AM Revision 952ef0ec (taxeditor): first steps for using nat tables for distribution editor
Katja Luther

12/03/2018

05:15 PM bug #7245: validation of ToOneRelatedEntityCombobox not working
This issue becomes more important now that blocking registrations are created. Names with missing nom. references cau... Andreas Kohlbecker
04:07 PM Revision 307279d3 (taxeditor): Clear candidates and target when saving + minor refactoring
Patrick Plitzner
03:38 PM Revision 8842e357 (taxeditor): Merge branch 'develop' into characterTransfer
Patrick Plitzner
03:34 PM bug #7934 (Resolved): sometimes the signs for deduplication are not shown
Fixed by commit:taxeditor|8f7409d9e3e9cb3550f65e194a634543fc6aa94d Patrick Plitzner
02:42 PM bug #7934 (Closed): sometimes the signs for deduplication are not shown
in some cases the signs for deduplication are not shown, but the context menu is adapted, for example it shows only r... Katja Luther
03:33 PM Revision 8f7409d9 (taxeditor): Revert "ref #7847 Fixate deduplication icon to first column"
This reverts commit 6fde7721bdb9cca2640864544d9606f90c5064b0. Patrick Plitzner
02:33 PM Revision c8fc9715 (taxeditor): minor
Katja Luther
02:29 PM bug #7913: Remove authorship from IJournal and IPrintSeries
this is also implemented in taxeditor. Please review. Katja Luther
02:29 PM bug #7915: Remove date published from journals and print series
this is also implemented in taxeditor. please review. Katja Luther
02:28 PM Revision 87f7c0f5 (taxeditor): ref #7915: remove date published for journal, print series in taxe...
Katja Luther
02:26 PM Revision cfbcbdcb (taxeditor): ref #7913: remove author for journal, print series in taxeditor
Katja Luther
02:22 PM bug #7737 (Resolved): Reference Details view does NOT give a multiple usage warning
this should be fixed. Please review Katja Luther
02:16 PM bug #7930: Remove DOI from journals, print series and person communications
for these three reference types the doi is removed. please review. Katja Luther
02:14 PM Revision b3f2ffb6 (taxeditor): ref #7930: remove doi for journal, print series and personal commu...
Katja Luther
12:00 PM Revision e2d46f06 (cdmlib): remove predicates moved to TaxonEditorPredicates
Katja Luther
11:59 AM bug #5926: Update labels in TermEditor for Vocabularies
Andreas Müller wrote:
> give back to me for review. Has this been fixed with DTO version of term editor or before?
...
Patrick Plitzner
11:59 AM Revision fe474060 (cdmlib): smaller changes in abcd import
Katja Luther
11:46 AM bug #7690 (In Progress): adapt available typedesignation editors to name rank
Andreas Kohlbecker
11:28 AM feature request #7928: Name type should not be identical to typified name
Another option to avoid this is filtering the available taxon name in the combobox to exclude the typified name.
S...
Andreas Kohlbecker
11:23 AM bug #7924 (Closed): LazyInitializationException (LIE) in taxon/{uuid}/synonymy.json when used wit...
the bugfix works as expected Andreas Kohlbecker
10:26 AM Revision cb9801c1 (cdmlib): ref #7755: provide all data for specimen pages
Katja Luther
10:20 AM Revision a2acff0a (cdm-dataportal): ref #7755: implement detail pages for occurrences, add links ...
Katja Luther

12/02/2018

10:56 PM bug #5926 (Resolved): Update labels in TermEditor for Vocabularies
give back to me for review. Has this been fixed with DTO version of term editor or before? Andreas Müller
10:54 PM bug #6231: Correctly handle failed term deletions in the editor
Shouldn't we always give tickets from other back for review or at least ask if they want to do review, before they ar... Andreas Müller

11/30/2018

05:02 PM bug #7933 (Closed): Adding a new Term to the "Country" vocabulary leads to corrupt data
After adding a new term to the "Country" vocabulary the cdm server throws an exception during startup Patrick Plitzner
05:01 PM Revision 8652abf4 (taxeditor): Experimental characterTransfer
Patrick Plitzner
05:00 PM Revision cbbdffcb (cdmlib): Generate character label in constructor
Patrick Plitzner
04:14 PM feature request #7847 (Closed): Use separate column for row state instead of symbol in titleCache...
Andreas Müller
02:34 PM feature request #7847: Use separate column for row state instead of symbol in titleCache column
If it is not possible to put the symbol beside the text we should better leave it where it is. Andreas Müller
01:46 PM feature request #7847: Use separate column for row state instead of symbol in titleCache column
The icon can be put in any corner or even centered. But, at least for now I haven't found an easy solution, if we put... Patrick Plitzner
01:19 PM feature request #7847: Use separate column for row state instead of symbol in titleCache column
I think we can will with this implementation though I still think that a separate column would be even better.
Is...
Andreas Müller
03:36 PM Revision 794f1010 (taxeditor): Fix possible NPE
Patrick Plitzner
03:12 PM feature request #5474 (Resolved): TermEditor menu should be more structured
@Andreas: Can you please check if this is still open? For example, "Others" is now translated when language is switched. Patrick Plitzner
02:55 PM bug #5926 (Worksforme): Update labels in TermEditor for Vocabularies
This has been fixed in the meantime. Patrick Plitzner
02:52 PM bug #6231 (Worksforme): Correctly handle failed term deletions in the editor
This has been fixed in the meantime. A popup will show what entities are still references when deletion is impossible... Patrick Plitzner
02:48 PM bug #6765 (Worksforme): NonUnique exception when dragging and dropping a lot of terms in the term...
This seems to be fixed by implementing DTOs in term editor #7887 Patrick Plitzner
02:31 PM Revision 6b834909 (cdmlib): fix #7367 Fix handling of referenced element in isDeletable() method
Patrick Plitzner
01:23 PM bug #6951 (Resolved): Drag and drop does not update term hierarchy in the UI
This issue is fixed with the implementation of DTOs in the term editor #7887 Patrick Plitzner
01:20 PM bug #6952 (Resolved): Deleting terms does not get reflected in the UI and in the DB
This issue is fixed with the implementation of DTOs in the term editor #7887 Patrick Plitzner
01:17 PM bug #7649: Term editor loads/saves extremely slow
true, I was just cleaning up tickets and there was actually no work done on this. But it makes sense to regard it as ... Patrick Plitzner
01:13 PM bug #7649: Term editor loads/saves extremely slow
why did you remove target version. It is a bug fix and needs to be reported for 5.5 I think. Andreas Müller
11:15 AM bug #7649 (Feedback): Term editor loads/saves extremely slow
This should be fixed with the implementation of using DTOs in #7887
@Katja: Can you close this once #7887 is revie...
Patrick Plitzner
12:06 PM bug #7367 (Resolved): Deleting a term in the term editor does not update the UI
Applied in changeset commit:cdmlib|4f93bc356e3a3ebd6f427310a451ab30ea89cc62. Patrick Plitzner
11:59 AM bug #7367 (In Progress): Deleting a term in the term editor does not update the UI
Patrick Plitzner
12:06 PM Revision 4f93bc35 (cdmlib): fix #7367 Evaluate configurator in isDeletable()
Patrick Plitzner
12:05 PM Revision e00917d5 (taxeditor): ref #7367 Use TermDeletionConfigurator in term editor
Patrick Plitzner
11:19 AM bug #7634: Timeout/Performance problems in Taxeditor
The context menu performance should have improved with fixing #7792 Patrick Plitzner
11:15 AM feature request #7887: Use DTOs in term editor
@Katja: Please also check and close #7649 when this is reviewed. Patrick Plitzner
11:11 AM bug #7850: Further problems with term editor
@Andreas M.: Can you please check if this is still an issue? Patrick Plitzner
11:08 AM Revision ab71093a (taxeditor): ref #7887 Fix possible NPE when dropping on same term
Patrick Plitzner
08:55 AM feature request #6805 (Resolved): Implement drag and drop from Term Editor (Feature) to FeatureTr...
Patrick Plitzner
08:54 AM Revision 4914816d (cdmlib): ref #6805 code cleanup
Patrick Plitzner
08:53 AM Revision 9092e20b (taxeditor): ref #6805 Fix term dragging into feature tree editor
Patrick Plitzner

11/29/2018

01:40 PM Revision aaeb1aaa (cdmlib-apps): Adapt palm import to new match strategy handling
Andreas Müller
01:39 PM Revision 32ec6ef6 (cdmlib): minor (reduce log level for inrefs not being books)
Andreas Müller
01:38 PM Revision a732ba17 (cdmlib): Add validation for journals with authors
Andreas Müller
01:37 PM Revision a44c8394 (cdmlib): ref #7699 Allow 3 representations for CdmImportBase.getImageMedia
Andreas Müller
01:35 PM Revision 7eba7072 (cdmlib-apps): minor chanes to PhycobankHigherClassificationActivator
Andreas Müller
01:34 PM Revision b718e9c2 (cdmlib-apps): minor changes to Greece image import Activator
Andreas Müller
01:33 PM Revision 106c8a4d (cdmlib-apps): ref #7669 improve Willing import
Andreas Müller
01:30 PM Revision afdbbd6e (cdmlib-apps): ref #3979 implement CdmPreferences for E+M Activator and some ot...
Andreas Müller
01:25 PM Revision a26a9112 (cdmlib-apps): ref #7921 Caucasus area import for E+M
Andreas Müller
01:20 PM Revision d7949dc1 (cdmlib): ref #7921 add Caucasus area voc uuids
Andreas Müller
01:18 PM Revision b45c1f2d (cdmlib): ref #7932 first implementation of PreferenceResolver and some adaptio...
* Correct handling of subtree subjects still open.
* Also creation of user defined subjects still open.
Andreas Müller
01:18 PM Revision 3986faa0 (cdmlib): cleanup
Andreas Müller
01:08 PM feature request #7932: Implement subject resolver for CdmPreferences
For now we implement solution 2. Andreas Müller
01:07 PM feature request #7932 (In Progress): Implement subject resolver for CdmPreferences
Finding the best matching preference for preferences with same predicates but differing subjects is currently not yet... Andreas Müller
12:54 PM Revision 4fa20463 (taxeditor): small layout changes
Patrick Plitzner
11:50 AM feature request #7847: Use separate column for row state instead of symbol in titleCache column
Patrick Plitzner wrote:
> It would also be possible to show the icon in the first column no matter what property is ...
Patrick Plitzner
11:10 AM feature request #7847 (Feedback): Use separate column for row state instead of symbol in titleCac...
It would also be possible to show the icon in the first column no matter what property is shown in the first column. ... Patrick Plitzner
11:46 AM Revision 6fde7721 (taxeditor): ref #7847 Fixate deduplication icon to first column
Patrick Plitzner
09:03 AM Revision 3a082bf5 (taxeditor): ref #7887 Enable supplemental data view for term DTOs
Patrick Plitzner
08:53 AM Revision 16a5a5e5 (taxeditor): ref #7837 Update docx4j version
Patrick Plitzner
08:53 AM Revision b7c2be3a (cdmlib): ref #7837 Update docx4j version
Patrick Plitzner

11/28/2018

02:06 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
After discussion with Henning DOI should not be available for journals and print series.
And I guess also for pers...
Andreas Müller
01:39 PM Revision 89ea7aed (cdmlib): ref #7930 remove IWithDoi from IAuthoredPublicationBase
Andreas Müller
01:38 PM Revision 1ef801b6 (cdmlib): revert unwanted last commit
Andreas Müller
01:37 PM Revision 2441a5df (cdmlib): ref #7930 remove IWithDoi from IAuthoredPublicationBase
Andreas Müller
01:32 PM bug #7930: Remove DOI from journals, print series and person communications
Please review and implement accordingly in TaxEditor (remove DOI from these 3 reference types if not yet done). Andreas Müller
01:30 PM bug #7930 (Resolved): Remove DOI from journals, print series and person communications
Applied in changeset commit:cdmlib|8bda418b4eea02e8a41111630a811719ab4ecc2f. Andreas Müller
01:02 PM bug #7930 (Closed): Remove DOI from journals, print series and person communications
Talking with WHK about DOIs we decided that journals and print series do not have DOIs. Therefore these should be rem... Andreas Müller
01:29 PM Revision 8bda418b (cdmlib): fix #7930 removed getDoi from IPublicationBase and IArticle and use I...
Andreas Müller
01:25 PM Revision f81ce9c8 (cdmlib): add Identifier to CdmPermissionClass
Andreas Müller
01:03 PM feature request #7931 (Resolved): add symbol2 to term detailsview
Katja Luther
01:02 PM feature request #7931 (Closed): add symbol2 to term detailsview
Katja Luther
12:36 PM Revision f0fed63a (taxeditor): add symbol2 to term details view
Katja Luther

11/27/2018

03:42 PM task #7921 (Resolved): Create database for Caucasus distribution editing
Andreas Müller
03:28 PM bug #7924: LazyInitializationException (LIE) in taxon/{uuid}/synonymy.json when used with subtree...
seems to be fixed correctly. I tested on test.E+M with http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_datap... Andreas Müller
02:35 PM bug #7924 (Resolved): LazyInitializationException (LIE) in taxon/{uuid}/synonymy.json when used w...
Applied in changeset commit:cdmlib|387f1cf1049dcda4829cbc80f230ba35de8eaceb. Andreas Müller
02:35 PM Revision 387f1cf1 (cdmlib): fix #7924 fix LIE in TaxonPortalController getSynonymy with subtree f...
Andreas Müller
02:35 PM Revision 763eed56 (cdmlib): some renamings and javadoc
Andreas Müller
02:11 PM Revision 78e3bcbc (cdmlib): ref #7929: clear the member list in group when deleting the group
Katja Luther
02:09 PM bug #7929 (Closed): after delete of not persisted object in bulkeditor the object is still in bul...
when deleting a not persisted objekt in bulk editor it is not removed from the list, this is because of the setting o... Katja Luther
01:41 PM Revision c11a2278 (taxeditor): fix delete of not persisted data in bulk editor
Katja Luther
12:05 PM feature request #7928 (New): Name type should not be identical to typified name
It is possible to typify a for example a genus name with itself.
There might be a warning, if typified and typifyin...
Wolf-Henning Kusber
09:58 AM Revision 4736d50c (taxeditor): ref #3767: add DOI to reference detail element
Katja Luther

11/26/2018

07:57 PM feature request #7927 (Closed): Registration not found, Portal handling registrations in preparat...
Problem: When http-Identifier are inserted in a manuscript, authors or editors or copy editors are checking the link.... Wolf-Henning Kusber
03:10 PM Revision 12d75812 (taxeditor): ref #7849: remove OVERRIDE constants from IPreferenceKeys and hand...
Katja Luther
01:22 PM Revision 9181d281 (taxeditor): ref #7849: continue adapt db and local preference pages
Katja Luther

11/23/2018

06:52 PM feature request #6869: Reference editor: Advanced mode only available for curators
submitter: caches = readonly
Author team cache can be altered by authorised submitters until formatting problems ("e...
Wolf-Henning Kusber
04:37 PM feature request #6869 (Feedback): Reference editor: Advanced mode only available for curators
From the point of view that titlecaches of the authorteams are often not satisfying this request makes not much sens... Andreas Kohlbecker
06:44 PM bug #7690: adapt available typedesignation editors to name rank
corrected correctly:
rank <= genus & rank > species: NameTypeDesignationEditor + SpecimenTypeDesignationEditor
Wolf-Henning Kusber
06:41 PM bug #7690 (Feedback): adapt available typedesignation editors to name rank
@Henning:
I think this is a typo:
> rank **>=** genus & rank > species: NameTypeDesignationEditor + SpecimenTyp...
Andreas Kohlbecker
04:58 PM bug #7690 (In Progress): adapt available typedesignation editors to name rank
Andreas Kohlbecker
04:59 PM Revision f9c6b1eb (cdm-vaadin): fixing incomplete enter() method of StartRegistrationViewBean
Andreas Kohlbecker
04:27 PM bug #7881: reference selection combobox broken after error in ...
close this issue if tit does not occur again in 15 days Andreas Kohlbecker
02:42 PM Revision e6f7451a (taxeditor): remove old class
Katja Luther
02:40 PM Revision 185eb33b (taxeditor): ref #7849: improve DB preference handling and use editorpreference...
Katja Luther
02:22 PM feature request #7217 (Closed): SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fi...
Test (Test system) 2018-11-23
Error radius shown
Normal Geo references converted
Forbidden entries result in an er...
Wolf-Henning Kusber
02:21 PM feature request #7642 (Rejected): PhycoBank Anzeige und Zugreifbarkeit von Basionymen in Vaadin (...
Andreas Kohlbecker
02:19 PM feature request #7642: PhycoBank Anzeige und Zugreifbarkeit von Basionymen in Vaadin (zur Diskuss...
Das Fehlen des Basionyms im Workingset der zugehörigen nomenklatorischen Referenz ist dadurch zu erklären, dass das a... Andreas Kohlbecker
02:14 PM feature request #7926 (New): for polytomous key nodes a move up/down alternative method should be...
creating a new node creates always an alternative linked to the next node and the second alternative is placed behind... Katja Luther
12:29 PM Revision 5d27006a (cdm-vaadin): harmonizing StartRegistrationPresenter with other presenters
Andreas Kohlbecker
12:19 PM bug #7925 (Closed): AbstractPopupEditor: exception handling in save method is incomplete
Andreas Kohlbecker
12:14 PM bug #7925 (Resolved): AbstractPopupEditor: exception handling in save method is incomplete
Applied in changeset commit:cdm-vaadin|73a2fd4785286f5eccabd56d4f1c08f67305a375. Andreas Kohlbecker
11:28 AM bug #7925 (Closed): AbstractPopupEditor: exception handling in save method is incomplete
the exception handling in the AbstractPopupEditor.save() method does not reliably find `FieldGroupInvalidValueExcepti... Andreas Kohlbecker
12:14 PM Revision 73a2fd47 (cdm-vaadin): fix #7925 more sofisticated exception handling in AbstractPopupEd...
Andreas Kohlbecker
11:58 AM Revision a213a051 (taxeditor): ref #7865 Update source details when editing source
Patrick Plitzner
10:46 AM feature request #7923 (Resolved): Add context menu and drag'n'drop to CharacterEditor
Patrick Plitzner
09:43 AM Revision b86c0b46 (taxeditor): ref #7923 i18n
Patrick Plitzner
09:43 AM Revision baafe6d6 (taxeditor): code cleanup
Patrick Plitzner
09:38 AM Revision f29b01d4 (taxeditor): Replace popup menu id by constant
Patrick Plitzner
09:34 AM Revision 63ddf9a7 (taxeditor): code cleanup
Patrick Plitzner
09:33 AM Revision 8127ab5c (taxeditor): javadoc
Patrick Plitzner
09:30 AM Revision 86fcba21 (taxeditor): ref #7923 Extend drag & drop action for creating characters
Patrick Plitzner

11/22/2018

05:42 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allo...
Nach wie vor internal error bei
http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/a0ddaa05-...
Wolf-Henning Kusber
01:49 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allo...
Test server was not yet build, please try again. Andreas Kohlbecker
01:40 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allo...
Fehler reproduzierbar, gleiche Fehlermeldung. Wolf-Henning Kusber
01:14 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allo...
Problem solved please test again Andreas Kohlbecker
03:39 PM Revision 3e157055 (taxeditor): ref #7923 Add context menu to character editor
Patrick Plitzner
03:07 PM Revision 567b23b7 (cdmlib): initializing GatheringEvent.exactLocation to avoid LIE in UIs
Andreas Kohlbecker
02:56 PM bug #7924 (Closed): LazyInitializationException (LIE) in taxon/{uuid}/synonymy.json when used wit...

http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/d7bb858b-d8e0-4f9a-8a47-081d1cb740e9/synonymy.json?s...
Andreas Kohlbecker
02:23 PM Revision 6268cff8 (taxeditor): ref #7923 Extract common interface for feature tree editors
Patrick Plitzner
02:23 PM feature request #7923 (Closed): Add context menu and drag'n'drop to CharacterEditor
Add all context functionality to character editor like in feature tree editor.
Add support for creating characters...
Patrick Plitzner
01:14 PM Revision a3a78809 (cdm-vaadin): ref #7217 better geo coordinate validation and parsing error feed...
Andreas Kohlbecker
01:10 PM Revision 8ed3ed80 (taxeditor): fix typo
Patrick Plitzner
12:08 PM feature request #7875 (Closed): Add multiple area selection to descriptive data set editor
Patrick Plitzner
12:06 PM feature request #7868 (Closed): Allow creating a new vocabulary in vocabulary selection dialog
Patrick Plitzner
12:05 PM feature request #7806 (Closed): GfBio Term Search issues
Patrick Plitzner
12:02 PM feature request #7869 (Closed): Run gfbio term service requests as background tasks
Patrick Plitzner
11:46 AM Revision d2ee9fd0 (cdmlib): ref #7922: add markertype for distribution editor descriptions
Katja Luther
11:42 AM Revision 08446924 (cdm-vaadin): ref #7223 hiding publication date field by reference type
Andreas Kohlbecker
11:38 AM Revision 239530ee (taxeditor): ref #7922: add preference to save distribution editor factual data...
Katja Luther
11:33 AM feature request #7922: Add possibility to save distributions created with the distribution editor...
It should be possible to save distributions created by the distribution editor in explicit descriptions.
This feat...
Katja Luther
11:29 AM feature request #7922 (In Progress): Add possibility to save distributions created with the distr...
Katja Luther
11:17 AM Revision a51915c2 (taxeditor): ref #7849: handle exception if value of preference not in Enum for...
Katja Luther
11:08 AM task #7921: Create database for Caucasus distribution editing
Standard v_cdm_exp_namesAll:
~~~ sql
SELECT NameId, NomRefFk, NomRefDetailFk
FROM dbo.Name
WH...
Andreas Müller
10:56 AM task #7921: Create database for Caucasus distribution editing
Standard v_cdm_exp_taxaDirect
~~~ sql
SELECT RIdentifier, PTNameFk, PTRefFk, 0 AS MA
FROM dbo....
Andreas Müller
10:55 AM task #7921 (Closed): Create database for Caucasus distribution editing
The following taxonomic groups should be included:
Caryophyllales: E9ADC31F-BF5B-4868-8D8E-D870DC848663 / 533921...
Andreas Müller
10:38 AM feature request #7920: Possibility to define area specific status selection
Changed Assignee as I will try to implement the algorithm class first. Andreas Müller
10:38 AM feature request #7920: Possibility to define area specific status selection
Result of discussion: we use the subject part of the CdmPreferences. By defining something like /taxeditor/NamedArea:... Andreas Müller
09:32 AM feature request #7920 (Feedback): Possibility to define area specific status selection
We need a possibility to define status selection lists depending on the area. For example in euro + med the status li... Katja Luther
10:01 AM Revision bae281da (taxeditor): ref #7837 Make feature tree export experimental
Patrick Plitzner
09:33 AM Revision ad042feb (taxeditor): ref #7837 Add docx export to feature tree context menu
Patrick Plitzner
09:30 AM Revision f4ec5c82 (cdmlib): ref #7837 Implement docx export
Patrick Plitzner
09:25 AM Revision 0bdaa913 (cdmlib): ref #7837 Format change for text body
Patrick Plitzner

11/21/2018

08:14 PM task #7917: Revise ReferenceSystemTerms
I did some further investigation on reference systems and their importance on geolocations. I adding these informatio... Andreas Kohlbecker
11:18 AM task #7917: Revise ReferenceSystemTerms
The entries are mixing Reference class and the method for finding the correct value. The method might be of interest,... Wolf-Henning Kusber
08:31 AM task #7917: Revise ReferenceSystemTerms
I discovered that adding 'gazetteer' was an explicit requirement which was handled in #2374. What was the purpose, us... Andreas Kohlbecker
05:27 PM Revision 3b4d17ef (taxeditor): ref #7873 Add docx4j jar to taxeditor dependencies
Patrick Plitzner
05:07 PM Revision 552fc1d1 (taxeditor): Merge branch 'develop' into wordExport
Patrick Plitzner
05:03 PM Revision 0387e75a (cdmlib): Merge branch 'develop' into wordExport
Patrick Plitzner
04:51 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
completed, please review vaadin reference editor Andreas Kohlbecker
11:34 AM bug #7223: ReferenceEditor: disable fields depending on the Reference type
I now moved the model discussion to #7918.
Andreas Kohlbecker
11:24 AM bug #7223: ReferenceEditor: disable fields depending on the Reference type
> InProceedings - Series: Correct, that this is not needed.
> Also it is not available in the IInProceedings inter...
Andreas Kohlbecker
08:15 AM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I think it is also worth mentioning the class `eu.etaxonomy.c...
Andreas Kohlbecker
07:50 AM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > The notes added in comment 19 should go into a separate taxed...
Andreas Kohlbecker
04:44 PM Revision 7e48a212 (cdmlib): ref #7918 harmonizing ReferencePropertyDefinitions with updated refer...
Andreas Kohlbecker
04:17 PM Revision bfe8226d (taxeditor): ref #7912 Centralize layout
Patrick Plitzner
04:17 PM task #7918: Revision of reference type specific properties
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > [copied from #7223#note-29 , Andreas Kohlbecker]
> >
> > >...
Andreas Kohlbecker
01:16 PM task #7918: Revision of reference type specific properties
Andreas Kohlbecker wrote:
> [copied from #7223#note-29 , Andreas Kohlbecker]
>
> > InProceedings - Series: Correc...
Andreas Müller
11:33 AM task #7918: Revision of reference type specific properties
[copied from #7223#note-29 , Andreas Kohlbecker]
> InProceedings - Series: Correct, that this is not needed.
> ...
Andreas Kohlbecker
11:32 AM task #7918: Revision of reference type specific properties
[copied from #7223#note-28 , Andreas Kohlbecker]
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I think i...
Andreas Kohlbecker
11:31 AM task #7918: Revision of reference type specific properties
[copied from #7223#note-26 , Andreas Müller]
Andreas Kohlbecker wrote:
> I think it is also worth mentioning the ...
Andreas Kohlbecker
11:30 AM task #7918: Revision of reference type specific properties
[partially copied from #7223#note-12 , Andreas Kohlbecker]
I think it is also worth mentioning the class `eu.etaxo...
Andreas Kohlbecker
11:29 AM task #7918: Revision of reference type specific properties
[copied from #7223#note-19 , Andreas Müller]
Some notes on the above:
DOIs: are available but just not implem...
Andreas Kohlbecker
11:27 AM task #7918 (Closed): Revision of reference type specific properties
Reference Editor of Vaadin (2018-11-02) in square brackets: Differences in the TaxEditor
*Article*
Date published...
Andreas Kohlbecker
04:03 PM feature request #7912 (Resolved): Enhance checkbox tree viewer
Patrick Plitzner
04:02 PM Revision a3895d57 (taxeditor): ref #7912 i18n
Patrick Plitzner
03:57 PM Revision 9ab27a32 (taxeditor): ref #7912 Fix selection states in checkbox viewer
Patrick Plitzner
01:51 PM feature request #7919 (Closed): GeoLocationField uses OpenTopoMap
Andreas Kohlbecker
01:51 PM feature request #7919 (Resolved): GeoLocationField uses OpenTopoMap
Applied in changeset commit:cdm-vaadin|fc2887de3c858ccda77df51d2c5196cf206e86d7. Andreas Kohlbecker
12:38 PM feature request #7919 (Closed): GeoLocationField uses OpenTopoMap
Use https://opentopomap.org/ for the map widget in the GeoLocationField Andreas Kohlbecker
01:51 PM Revision fc2887de (cdm-vaadin): fix #7919 using opentopomap as map layer for the GeoLocationField
Andreas Kohlbecker
11:07 AM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allo...
Fehler im Testsystem reproduzierbar. Wolf-Henning Kusber
11:01 AM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allo...
Parser is workin fine, except of "forbidden entries"
50°61'15"N seems to produce not only a warn "Latitude !" in r...
Wolf-Henning Kusber
08:57 AM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allo...
please review Andreas Kohlbecker
10:46 AM bug #7480: ReferenceEditor misses institution, organization and school fields
Im Prinzip funktioniert es.
Habe unter "School" ein Institut eingebeben, bei "part of" die Freie Universität Berlin....
Wolf-Henning Kusber
09:55 AM bug #7833: submitters can access see any registration in any RegistrationWorkingSet
RegistrationWorkingSet Unpublished references must only be accessible for submitters which have UPDATE permission | w... Wolf-Henning Kusber
08:54 AM feature request #7218: SpecimenTypedesignationsWorkingsetEditor: support for Reference system
please review Andreas Kohlbecker
08:52 AM feature request #7218 (Resolved): SpecimenTypedesignationsWorkingsetEditor: support for Referenc...
Applied in changeset commit:cdm-vaadin|9e57a9b35bf0f2cc2439cd0b3ad1630111efc211. Andreas Kohlbecker
08:49 AM feature request #7218 (In Progress): SpecimenTypedesignationsWorkingsetEditor: support for Refer...
Andreas Kohlbecker
08:51 AM Revision 9e57a9b3 (cdm-vaadin): fix #7218 GeoLocationField: reference system select fully functional
Andreas Kohlbecker

11/20/2018

06:41 PM task #7917 (Feedback): Revise ReferenceSystemTerms
Hi Andreas, please commment Andreas Kohlbecker
06:41 PM task #7917 (Feedback): Revise ReferenceSystemTerms
A spatial reference system (SRS) or coordinate reference system (CRS) is a coordinate-based local, regional or global... Andreas Kohlbecker
06:21 PM Revision 042f5d3a (cdmlib): minor
Andreas Müller
06:13 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Andreas Kohlbecker wrote:
> I think it is also worth mentioning the class `eu.etaxonomy.cdm.model.reference.Referenc...
Andreas Müller
06:01 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Andreas Kohlbecker wrote:
> The notes added in comment 19 should go into a separate taxeditor ticket since this tick...
Andreas Müller
05:34 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Maybe we should also remove DOI from journal and print series. Andreas Müller
03:57 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
The notes added in comment 19 should go into a separate taxeditor ticket since this ticket here is mainly focused on ... Andreas Kohlbecker
02:55 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
Some notes on the above:
DOIs: are available but just not implemented yet #3767
Date published for Journals a...
Andreas Müller
06:10 PM bug #7916 (Closed): SpecimenTypeDesignationEditor: Map shows error radius
Andreas Kohlbecker
05:52 PM bug #7916 (Resolved): SpecimenTypeDesignationEditor: Map shows error radius
Applied in changeset commit:cdm-vaadin|d8487d07970641cf88b82276829e5c88301df9cb. Andreas Kohlbecker
05:49 PM bug #7916 (Closed): SpecimenTypeDesignationEditor: Map shows error radius
The map in the `GeoLocationField` should show the error radius Andreas Kohlbecker
05:52 PM Revision d8487d07 (cdm-vaadin): fix #7916 visualizing the error radius in the GeolocationField map
Andreas Kohlbecker
05:24 PM bug #7828 (In Progress): Remove date published from journals in E+M
Andreas Müller
05:17 PM bug #7828 (Duplicate): Remove date published from journals in E+M
Andreas Müller
05:20 PM bug #7913 (Resolved): Remove authorship from IJournal and IPrintSeries
Andreas Müller
05:17 PM bug #7913 (Duplicate): Remove authorship from IJournal and IPrintSeries
Andreas Müller
05:16 PM bug #7913 (Resolved): Remove authorship from IJournal and IPrintSeries
Applied in changeset commit:cdmlib|67aae1661ccedd224c4e57400eeb012d0e06f8fb. Andreas Müller
03:19 PM bug #7913 (Closed): Remove authorship from IJournal and IPrintSeries
Authorship should be removed from journals and print series. Even if they share a common author the authorship should... Andreas Müller
05:17 PM bug #7839 (Duplicate): IJournal should not have author, date published etc.
Andreas Müller
05:16 PM bug #7915 (Resolved): Remove date published from journals and print series
Applied in changeset commit:cdmlib|f2c63453989c2752a87d078b61049b2806fd0097. Andreas Müller
05:09 PM bug #7915 (Closed): Remove date published from journals and print series
Journals (and also print series) do not have a single publication date but only a period in which single volumes have... Andreas Müller
05:16 PM feature request #7914 (Resolved): Add ISBN to IProceedings
Applied in changeset commit:cdmlib|3d01e669fc0a9d6846b879af96935d028d008c26. Andreas Müller
03:29 PM feature request #7914: Add ISBN to IProceedings
sorry, this is for proceedings, not in-proceedings. Andreas Müller
03:26 PM feature request #7914 (Closed): Add ISBN to IProceedings
Proceedings are books though they do not implement the IBook interface as they do not have editions.
ISBN needs to...
Andreas Müller
05:15 PM Revision cb247b1b (cdmlib): some improvements to name parser for better BookSection identification
Andreas Müller
05:15 PM Revision 435a77ca (cdmlib): add convenience methods for reference type
Andreas Müller
05:15 PM Revision 83cf9df2 (cdmlib): ref #7914 add javadoc to IWithIsbn interface
Andreas Müller
05:15 PM Revision dd74d50b (cdmlib): improve journal parser
Andreas Müller
05:15 PM Revision c3ea667f (cdmlib): cleanup and javadoc
Andreas Müller
05:15 PM Revision f2c63453 (cdmlib): fix #7915 move datePublished to subinterface IWithAuthorAndDate, remo...
Andreas Müller
05:15 PM Revision 3d01e669 (cdmlib): fix #7914 add ISBN to IProceedings (by adding new interface IWithIsbn)
Andreas Müller
05:15 PM Revision 67aae166 (cdmlib): fix #7913 remove authorship from IJournal and IPrintSeries
Andreas Müller
04:58 PM Revision f610b87d (cdm-vaadin): ref #7217 validator and converter for geolocations used in GeoLoc...
Andreas Kohlbecker
04:57 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allo...
Parsing now works perfectly, the GeoLocationField needs some changes thought ... Andreas Kohlbecker
04:54 PM Revision 2cda7860 (cdmlib): fixing NPE in Point and minor change in java doc to ReferenceProperty...
Andreas Kohlbecker
03:51 PM Revision 05d18da0 (taxeditor): ref #7912 Add toolbar to checkbox viewer + visualize selection state
Patrick Plitzner
01:48 PM Revision aca8da6b (taxeditor): missed in last commit
Katja Luther
01:22 PM Revision c130c5fe (taxeditor): ref #7849: do not save preferences if page was not edited
Katja Luther
12:51 PM Revision 432276e4 (taxeditor): ref #7849: harmonize admin and local preferences for distribution ...
Katja Luther
11:27 AM task #7636 (Closed): remove obsolete code which dissociates removed TypeDesignations from Registr...
This code has already been removed commit:cdm-vaadin|9dab909 Andreas Kohlbecker
10:26 AM Revision 6b16ea9a (cdmlib): Merge branch 'develop' into wordExport
Patrick Plitzner
09:31 AM bug #7631 (Worksforme): PhycoBank Vaadin: Institution selected, edit with Collection code fails
This issue has been solved meanwhile. Andreas Kohlbecker
09:18 AM feature request #7655 (Duplicate): References Editor: book section offers title field
duplicate of #7223 Andreas Kohlbecker
09:14 AM bug #7721 (Rejected): Contraint Violation Exception on saving Reference Popup Editor
This issue is 3 months old. The cause which lead to this aftereffect has most probably been fixed meanwhile. Andreas Kohlbecker
09:10 AM bug #7480 (Closed): ReferenceEditor misses institution, organization and school fields
Done! Andreas Kohlbecker
09:09 AM bug #7480 (Resolved): ReferenceEditor misses institution, organization and school fields
Applied in changeset commit:cdm-vaadin|c6db362dfc15d063b5111b04e0a4c0e683445e75. Andreas Kohlbecker
09:09 AM Revision 67d3b70d (cdm-vaadin): delete button not needed when creating new institution
Andreas Kohlbecker
09:07 AM Revision c6db362d (cdm-vaadin): fix #7480 implementing school, institute and school fields in Ref...
Andreas Kohlbecker

11/19/2018

05:59 PM Revision b0e76d4c (cdmlib): adding iReport to ReferencePropertyDefinitions - 2
Andreas Kohlbecker
05:58 PM Revision 56c52253 (cdmlib): adding iReport to ReferencePropertyDefinitions
Andreas Kohlbecker
05:56 PM task #7758: Manual cleanup after E+M import
Make Strid & Kit Tan a BookSection
~~~
in Strid & Kit Tan, Mount. Fl. Greece 1: 570. 1986 | Euphorbia myrsinites ...
Andreas Müller
04:55 PM bug #7223: ReferenceEditor: disable fields depending on the Reference type
except of the institution, organization and school fields which are handled in #7480 all issues named in this ticket ... Andreas Kohlbecker
04:50 PM Revision c397c928 (cdm-vaadin): ref #7223 fixing field visibility of various reference types
Andreas Kohlbecker
04:49 PM Revision dd8c884c (cdm-vaadin): new reference for registration starts as Article
Andreas Kohlbecker
01:22 PM Revision 32e7335f (cdmlib): ref #7837 cleanup + add TOC generation example
Patrick Plitzner
12:59 PM feature request #7217 (Resolved): SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude ...
I added double apostrophe as marker for seconds. This fixes the tests.
I also replaced the UTF8 constants by links...
Andreas Müller
12:57 PM Revision ac6f2b2b (cdmlib): ref #7217 add double apostrophe as second marker
Andreas Müller
12:21 PM Revision 1b996cca (cdmlib): ref #7902, ref #7901 add generic to allow return types for defaultVal...
Andreas Müller
12:09 PM feature request #7912 (Closed): Enhance checkbox tree viewer
Implement buttons:
* to (de-)select all children
* select all children recursively or only direct children
Vis...
Patrick Plitzner
11:52 AM Revision 3ca67b85 (cdmlib): ref #7217 creating test to reproduce long lat parsing problem
Andreas Kohlbecker
11:38 AM Revision 48cdd986 (cdmlib): CoordinateConverterTest using unicode constants for all signs
Andreas Kohlbecker
10:50 AM Revision 5250237d (cdm-vaadin): using IntegerConverter for Geolocation.errorRadius field
Andreas Kohlbecker
10:33 AM feature request #7886: Divide local preferences to db dependend local preferences
ok Andreas Müller
10:09 AM feature request #7886 (Resolved): Divide local preferences to db dependend local preferences
Andreas Müller wrote:
> is the resolved or are there open issues?
>
> Maybe we need to clearly define somewhere w...
Katja Luther
10:32 AM bug #7911: Changing areas in Distribution Editor yields to wrong column labels
can you please link to other Distribution Editor tickets, especially the one for open issues. Andreas Müller
10:30 AM bug #7639 (Resolved): SpecimenTypeDesignationEditor: Altitude not saved and displayed properly
Problem solved, please review. Andreas Kohlbecker
10:29 AM feature request #7600 (Resolved): public setters for entity collections
Reopen for doing review. Andreas Müller
10:28 AM Revision 6d6b02e9 (cdm-vaadin): ref #7639 using fixed NumberFormat for integers to avoid locale c...
Andreas Kohlbecker
10:28 AM Revision 943f7a01 (taxeditor): Merge branch 'develop' into wordExport
Patrick Plitzner
10:28 AM Revision e0e575d0 (cdmlib): Merge branch 'develop' into wordExport
Patrick Plitzner
10:06 AM Revision 617f3dc9 (cdm-vaadin): ref #7639 removing custom decimal point, comma translation witch ...
Andreas Kohlbecker
09:37 AM Revision 3bc664c1 (cdmlib): code cleaning, removing system.err...
Katja Luther

11/16/2018

03:31 PM bug #7911 (Resolved): Changing areas in Distribution Editor yields to wrong column labels
please review. Katja Luther
03:30 PM bug #7911: Changing areas in Distribution Editor yields to wrong column labels
this is fixed in hotfix 5.4.3 and with commit Revision fecf5fd5 Katja Luther
03:26 PM bug #7911 (Resolved): Changing areas in Distribution Editor yields to wrong column labels
when changing the areas displayed in distribution editor yields to wrong order of column labels. Katja Luther
03:27 PM Revision fecf5fd5 (taxeditor): ref #7911: fix wrong order index of columns in distribution editor...
Katja Luther
03:20 PM Revision 7e445485 (taxeditor): Merge branch 'hotfix/5.4.3'
jenkins
02:37 PM Revision 5cb02a23 (taxeditor): code cleaning
Katja Luther
02:06 PM Revision 5a143666 (cdmlib): ref #7760 Add collection code to citation
Patrick Plitzner
02:02 PM Revision ae00edaa (cdmlib): ref #7837 Use docx4j to generate docx file
Patrick Plitzner
01:57 PM Revision 8f3316f4 (taxeditor): fix problems with column index of distribution editor when changin...
Katja Luther
01:42 PM Revision e6639161 (taxeditor): Updated version in pom / project files to taxeditor version : 5.4....
jenkins
01:27 PM feature request #7600 (Closed): public setters for entity collections
I think it is save now to close this issue. Andreas Kohlbecker
01:26 PM Revision c37df82d (cdmlib): ref #7600 removing EntityCollectionSetterAdapter fields from Team and...
Andreas Kohlbecker
01:15 PM bug #7910 (Resolved): TeamOrPersonField: readonly exception on bindig data
Hallo Henning,
Das TeamOrPersonField sollte nun korrekt funktionieren. Bitte teste verschiedene Varianten durch.
Andreas Kohlbecker
01:06 PM bug #7910: TeamOrPersonField: readonly exception on bindig data
I implemented the `EntityCollectionSetterAdapter` (#7600) in order to provide a public setter method for teammembers.... Andreas Kohlbecker
01:13 PM Revision ea92bdaa (cdm-vaadin): ref #7910 TeamOrPersonField adapting read only state handling to ...
Andreas Kohlbecker
01:09 PM Revision 64bf3ea5 (cdm-vaadin): ref #7910 ToManyRelatedEntitiesListSelect: no longer setting read...
Andreas Kohlbecker
12:47 PM Revision 695f0fab (taxeditor): Revert "Revert "ref #7849: move general db preferences to its own ...
This reverts commit e78f3e6c944dd0630daef5ecfab96773a875c695. Patrick Plitzner
09:05 AM Revision 75052754 (cdmlib): Merge branch 'develop' into wordExport
Patrick Plitzner

11/15/2018

04:46 PM Revision ea42fa08 (cdmlib): ref #7600 EntityCollectionSetterAdapter no longer caching Methods to ...
Andreas Kohlbecker
04:26 PM feature request #7600: public setters for entity collections
Another serialization issue:
~~~
login : admin
editor version : 5.5.0.qualifier
server : localhost (localhost-d...
Andreas Kohlbecker
04:10 PM feature request #7600 (In Progress): public setters for entity collections
EntityCollectionSetterAdapter is causing problems in the http-invoker during serialization:
~~~
login : admin
ed...
Andreas Kohlbecker
02:44 PM feature request #7600 (Feedback): public setters for entity collections
The `EntityCollectionSetterAdapter` is implemented and being used for `Team.teamMembers` and `AnnotatableEntity.annot... Andreas Kohlbecker
01:56 PM feature request #7600 (In Progress): public setters for entity collections
Andreas Kohlbecker
04:15 PM Revision f978754c (cdmlib): Merge branch 'develop' into wordExport
Patrick Plitzner
04:14 PM Revision 43fd7d93 (cdmlib): ref #7600 EntityCollectionSetterAdapter serializable
Andreas Kohlbecker
03:50 PM Revision 4eed634d (taxeditor): Merge branch 'develop' into wordExport
Patrick Plitzner
03:50 PM Revision a2596a71 (cdmlib): Merge branch 'develop' into wordExport
Patrick Plitzner
03:22 PM Revision 8646730e (taxeditor): Close matrix and descriptive data set editor when closing connection
Patrick Plitzner
03:17 PM Revision cd035648 (taxeditor): code cleanup
Patrick Plitzner
03:14 PM Revision 7d85b770 (cdmlib): Return created feature node instead of feature tree
Patrick Plitzner
03:14 PM Revision c41a916e (taxeditor): Fix selection when creating new nodes
Patrick Plitzner
02:54 PM bug #6807 (Rejected): Deleting a FeatureNode is persisted although the editor is set to dirty
with fixing #6806 the saving strategy has changed and the editor is only set to dirty when editing in the details vie... Patrick Plitzner
02:52 PM feature request #6806 (Resolved): Add context menu to FeatureTreeEditor
Patrick Plitzner
02:32 PM feature request #6806 (In Progress): Add context menu to FeatureTreeEditor
Patrick Plitzner
02:52 PM Revision 1bedfdc0 (taxeditor): code cleaning
Patrick Plitzner
02:50 PM Revision 4f315fd2 (taxeditor): Use utility method to confirm deletion
Patrick Plitzner
02:50 PM Revision 41e1666a (taxeditor): ref #6806 Fix dirty state handling and saving in feature tree editor
Patrick Plitzner
02:50 PM Revision 9fa62583 (cdmlib): ref #7600 adding usage example to EntityCollectionSetterAdapter doc
Andreas Kohlbecker
02:33 PM Revision 288109a7 (taxeditor): ref #6806 Add isDirty() to IE4SavablePart + extract dirty check to...
Patrick Plitzner
02:24 PM Revision ba1a500d (cdmlib): ref #7600 renaming arument in EntityCollectionSetterAdapter
Andreas Kohlbecker
02:23 PM Revision 0ba3b57d (cdmlib): ref #7600 using EntityCollectionSetterAdapter for AnnotatableEntity.a...
Andreas Kohlbecker
02:23 PM Revision f1ea206f (cdmlib): ref #7600 using EntityCollectionSetterAdapter for Team.teamMembers - ...
Andreas Kohlbecker
01:19 PM Revision ffc36c9b (cdmlib): ref #7600 using EntityCollectionSetterAdapter for Team.teamMembers
Andreas Kohlbecker
01:18 PM Revision eb6691aa (cdmlib): ref #7600 EntityCollectionSetterAdapter implemented
Andreas Kohlbecker
12:21 PM Revision 1e4ee5f1 (cdmlib): Merge branch 'develop' into wordExport
Patrick Plitzner
11:18 AM Revision cf349935 (taxeditor): Ask for saving before executing operations
Patrick Plitzner
11:18 AM Revision 54571b82 (taxeditor): Add savablePart to FeatureNodeDropAdapter
Patrick Plitzner
09:38 AM bug #7910: TeamOrPersonField: readonly exception on bindig data
The preferred solution to this is making the `setTeamMembers()` in Team `public`
Are you ok with this Andreas Mül...
Andreas Kohlbecker
08:45 AM bug #7910 (In Progress): TeamOrPersonField: readonly exception on bindig data
The root of this problem is the Team class in which the setter for members is `protected`. This causes the `PropertyD... Andreas Kohlbecker
08:25 AM bug #7910 (Closed): TeamOrPersonField: readonly exception on bindig data

~~~
Caused by: com.vaadin.data.Buffered$SourceException
at com.vaadin.ui.AbstractField.setPropertyDataSource(A...
Andreas Kohlbecker

11/14/2018

06:37 PM feature request #7899: enable orthographic name correction in Vaadin
Im Vergleich zu meinem Vorschlag habe ich zu Mastogloia wulffii im TaxEditor Mastogloia wulffiae neu angelegt, diesel... Wolf-Henning Kusber
05:59 PM Revision 5ff2ddc5 (cdm-vaadin): adding user information to PopupEditorException messages
Andreas Kohlbecker
04:16 PM Revision 09d9b24d (cdmlib): ref #7837 Use ODFDOM for word export
Patrick Plitzner
03:12 PM Revision 4516c47c (cdm-vaadin): ref #7908 disabling redmine message check in redmine communicatio...
Andreas Kohlbecker
02:57 PM bug #7908 (Closed): Redmine communication hub slows down RegistrationWorkingSets
As stated in #7785 the checking for messaged in the Redmine instance serving as communication hub slows down the disp... Andreas Kohlbecker
02:52 PM task #7785 (Closed): CdmUserHelper caches permission information
Andreas Kohlbecker
02:51 PM task #7785: CdmUserHelper caches permission information
The CachingCdmUserHelper effectively brings a performance boost of ~2 seconds for the big working set "Kulikovskiy, M... Andreas Kohlbecker
02:23 PM Revision 4dadd125 (cdm-vaadin): ref #7785 fixing usage of wrong cacher method which prevented fro...
Andreas Kohlbecker
01:52 PM Revision 32a4157a (cdm-vaadin): using CachingUserHelper also with RegistrationItemNameAndTypeButt...
Andreas Kohlbecker
11:29 AM Revision 2be2ac05 (cdm-vaadin): ref #7906 ContinueAlternativeCancelDialog implemented
Andreas Kohlbecker
11:13 AM bug #7907 (Closed): Annotations in Reference page do not respect the annotation settings
... habe gerade gesehen, dass im Production Portal unsere internal notes angezeigt werden.
https://www.phycobank....
Andreas Kohlbecker

11/13/2018

06:21 PM feature request #7906 (Closed): AbstractPopupEditor: Notify user on editor changes and provide op...
Andreas Kohlbecker
06:20 PM feature request #7906 (Resolved): AbstractPopupEditor: Notify user on editor changes and provide ...
Applied in changeset commit:cdm-vaadin|de9c748c7ddf20de3021ee578f644d58d9bc5683. Andreas Kohlbecker
06:19 PM feature request #7906: AbstractPopupEditor: Notify user on editor changes and provide options to ...
Confirmation dialog implemented:
![](picture491-1.png)
Andreas Kohlbecker
05:01 PM feature request #7906 (Closed): AbstractPopupEditor: Notify user on editor changes and provide op...
Andreas Kohlbecker
06:20 PM Revision de9c748c (cdm-vaadin): fix #7906 editor cancel confirmation dialog implemented
Andreas Kohlbecker
05:13 PM feature request #7903: Add treeIndex with rank to cdm light export
Katja Luther wrote:
> noch eine kurze Anmerkung, die Sortierung im Navigator ist eine Preference im Editor, man kann...
Andreas Müller
01:47 PM feature request #7903: Add treeIndex with rank to cdm light export
noch eine kurze Anmerkung, die Sortierung im Navigator ist eine Preference im Editor, man kann wählen zwischen alphab... Katja Luther
01:40 PM feature request #7903 (Resolved): Add treeIndex with rank to cdm light export
Hallo,
hier die Mails zur Taxon-Sortierung.
Wenn ich den TreeIndex richtig verstehe, dann ist das eine weitere Tabe...
Katja Luther
04:52 PM bug #7878 (Resolved): Edit CollectionCode not saved
fixed! Please review. Andreas Kohlbecker
04:51 PM Revision a043ae5b (cdm-vaadin): #7878 adapting SpecimenTypeDesignationWorkingsetEditorPresenter t...
Andreas Kohlbecker
04:28 PM bug #7905 (Resolved): NPE in InstitutionEditorPresenter
Applied in changeset commit:cdm-vaadin|e440fd7507f08b9c3e1c30af34f53d35bb044c63. Andreas Kohlbecker
03:32 PM bug #7905 (Closed): NPE in InstitutionEditorPresenter
[reported by Heba]
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/0ddaa1fb-99b7-4666-859f-7bd...
Andreas Kohlbecker
04:28 PM Revision e440fd75 (cdm-vaadin): fix #7905 introducing defaultCdmEntityInstatiator and createCdmE...
Andreas Kohlbecker
03:53 PM Revision f277df8a (cdm-vaadin): ref #7900 removing remains from old code
Andreas Kohlbecker
03:36 PM Revision 3732fb9e (cdmlib): fixing LazyInitializationException
Andreas Kohlbecker
03:36 PM Revision ef59fcf5 (cdm-vaadin): SpecimenTypeDesignationWorkingSetServiceImpl load method read-only
Andreas Kohlbecker
03:23 PM bug #7904 (Feedback): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() create...
I suggest two modifications:
1. `DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber()` without the...
Andreas Kohlbecker
02:12 PM bug #7904: DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary...
The creation of Teams in this methods seems to be completely unnecessary Andreas Kohlbecker
02:06 PM bug #7904 (Feedback): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() create...
The root cause for the excessive memory allocation reported in #7900 is the `DerivedUnitFacadeFieldUnitCacheStrategy.... Andreas Kohlbecker
02:11 PM bug #7900: Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
The `DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber()` is actually the root cause for the massive... Andreas Kohlbecker
01:46 PM Revision c3ebf587 (taxeditor): Merge branch 'develop' into wordExport
Patrick Plitzner
01:43 PM Revision eed28c29 (cdmlib): Merge branch 'develop' into wordExport
Patrick Plitzner
01:42 PM feature request #7887 (Resolved): Use DTOs in term editor
Katja Luther wrote:
> One open issue:
>
> when creating a new defined term, the selection is still on the vocabul...
Patrick Plitzner
01:39 PM Revision 2e222ab7 (taxeditor): ref #7887 Correctly evaluate children in term content provider
Patrick Plitzner
01:27 PM Revision 74515372 (taxeditor): ref #7887 Select newly created term
Patrick Plitzner
01:27 PM Revision 533c3163 (cdmlib): ref #7887 Return newly created DTO from service method
Patrick Plitzner
12:27 PM Revision 573841a9 (taxeditor): ref #7887 Remove unused classes
Patrick Plitzner
12:24 PM Revision 73c47718 (taxeditor): ref #7887 Code cleanup
Patrick Plitzner
12:21 PM Revision f38ea76f (taxeditor): ref #7887 Remove grayed value preferences from distributon wizards
Patrick Plitzner
12:16 PM Revision 7b3ca53d (taxeditor): ref #7887 Fix initial grayed state in checkbox composite
Patrick Plitzner
11:20 AM Revision 6a4bbc46 (taxeditor): ref #7887 Fix javadoc
Patrick Plitzner
11:20 AM Revision c6b9b74b (taxeditor): ref #7887 Adapt to service layer changes
Patrick Plitzner
11:20 AM Revision 75be5411 (taxeditor): ref #7887 code cleanup
Patrick Plitzner
11:20 AM Revision 20f51c0a (taxeditor): ref #7887 Fix preference persisting (based on DTOs)
Patrick Plitzner
11:20 AM Revision cae3bd94 (taxeditor): ref #7875 Do not save grayed values
Patrick Plitzner
11:20 AM Revision 1cac1886 (cdmlib): ref #7887 Refactor TermDto usage
Patrick Plitzner
11:20 AM Revision 37d1c24f (cdmlib): ref #7887 Add "parent" DTOs to TermDto
Patrick Plitzner
11:20 AM Revision e65bf3fb (cdmlib): ref #7887 Set parent DTOs during initialization
Patrick Plitzner
11:20 AM Revision b9ee0c73 (cdmlib): ref #7887 Remove getParent()
Patrick Plitzner
09:19 AM Revision 923fd553 (cdmlib): ref #7900 reverting : read-only transactions in DTO service with Prop...
Andreas Kohlbecker

11/12/2018

07:21 PM bug #7236: Make available distribution status a database preference for TaxEditor distribution ed...
Probably (1) is solved now. Can you verify this?
Is (2) still an open issue or is it solved? Or will it be solved ...
Andreas Müller
07:13 PM feature request #7345: [E+M] Common name references selectable in TaxEditor
Can you add openIssues to the ticket, so we remember what is still missing. Or is it already fully solved and can be ... Andreas Müller
07:10 PM bug #7699: NPE when searching for specimen in bulk editor
As this does not seem to be solved yet I move it to the next version. Andreas Müller
07:08 PM feature request #7886: Divide local preferences to db dependend local preferences
is the resolved or are there open issues?
Maybe we need to clearly define somewhere which preferences are DB depen...
Andreas Müller
06:21 PM bug #7900 (Resolved): Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
Andreas Kohlbecker
04:45 PM bug #7900: Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
The root cause for the problem is the `RegistrationWorkingsetPresenter.onDoneWithTaxonnameEditor()` method in which a... Andreas Kohlbecker
02:12 PM bug #7900: Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets
It seems as if the `DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber()` is causing the massive memo... Andreas Kohlbecker
06:05 PM bug #7892 (Closed): RegistrationWorkingsetEditor: LIE creating new name for book section
Andreas Kohlbecker
05:46 PM bug #7892 (Feedback): RegistrationWorkingsetEditor: LIE creating new name for book section
so this issue is solved and we can close it now? Andreas Kohlbecker
05:19 PM Revision a606cd84 (taxeditor): rename SHOW_NAME_IN_SOURCE to SHOW_NAMESPACE_IN_SOURCE in taxeditor
Andreas Müller
05:14 PM Revision 37058586 (taxeditor): rename SHOW_NAME_IN_SOURCE to SHOW_NAMESPACE_IN_SOURCE in taxeditor
Andreas Müller
05:07 PM Revision 4d18f3c4 (cdmlib): ref #7900 read-only transactions in DTO service with Propagation.REQU...
Andreas Kohlbecker
05:04 PM feature request #7902 (In Progress): Allow default values for PreferencePredicates
Generally implemented but for existing predicates we still need to define default values.
For boolean and/or UUIDs...
Andreas Müller
04:41 PM feature request #7902 (In Progress): Allow default values for PreferencePredicates
Andreas Müller
04:51 PM feature request #7901 (Resolved): Make PreferencePredicates an interface to allow multiple implem...
Andreas Müller
04:39 PM feature request #7901 (Closed): Make PreferencePredicates an interface to allow multiple implemen...
Andreas Müller
04:49 PM Revision ca8969f2 (cdmlib): ref #7901 implement IPreferencePredicate in CdmPreference and service...
Andreas Müller
04:48 PM Revision c47fd6c0 (cdmlib): ref #7901, ref #7902 Create IPreferencePredicate and include getDefa...
Andreas Müller
04:46 PM Revision 07bbd695 (cdm-vaadin): ref #7900 comitting writable transaction before loading the regis...
Andreas Kohlbecker
12:43 PM feature request #7887 (Feedback): Use DTOs in term editor
One open issue:
when creating a new defined term, the selection is still on the vocabulary, for lists with several...
Katja Luther
12:40 PM feature request #7887 (Closed): Use DTOs in term editor
looks fine now! Katja Luther
08:59 AM feature request #7887 (Resolved): Use DTOs in term editor
Katja Luther wrote:
> some issues I recognized while testing:
>
> * after creating a new vocabulary the editor do...
Patrick Plitzner
12:01 PM Revision 22cfc372 (taxeditor): add empty first page for admin preferences
Katja Luther
11:48 AM Revision 86aaf6da (taxeditor): ref #7887 code cleanup
Patrick Plitzner
11:46 AM Revision 260688cb (taxeditor): ref #7887 Catch potential preference initialization problem
Patrick Plitzner
11:46 AM Revision 18154a72 (taxeditor): ref #7887 Fix preference persisting (based on DTOs)
Patrick Plitzner
11:12 AM Revision e78f3e6c (taxeditor): Revert "ref #7849: move general db preferences to its own tab to a...
This reverts commit b123c0b7320fdddda7c26405b76be8db119f4445. Patrick Plitzner
09:00 AM Revision b743b880 (taxeditor): ref #7887 Speed up saving
- Fix multiple saving of the same term base Patrick Plitzner
08:39 AM Revision 7dd44098 (taxeditor): ref #7887 Refresh term editor when new vocabulary is created
Patrick Plitzner
08:30 AM Revision 49f7b066 (taxeditor): ref #7887 Sort vocabularies in term editor
Patrick Plitzner
08:20 AM Revision 4d8c9172 (taxeditor): ref #7887 code cleanup
Patrick Plitzner

11/09/2018

08:34 PM Revision 0c5910cb (cdmlib): ref #7800 further parsing for volume and edition part and for some sp...
Andreas Müller
04:33 PM Revision a0976016 (cdmlib): ref #7800 2nd fix tests with special characters
Andreas Müller
03:50 PM Revision e6883603 (cdmlib): ref #7800 fix tests with special characters
Andreas Müller
03:02 PM Revision 88710aed (cdmlib): ref #7800 improve parsing of details and reference titles
Andreas Müller
02:54 PM feature request #7887: Use DTOs in term editor
some issues I recognized while testing:
* the details view updates with every keystroke
* sometimes saving takes ...
Katja Luther
01:52 PM Revision 103f7f4a (taxeditor): ref #7887 Use term DTOs for distribution wizards
Patrick Plitzner
12:34 PM bug #7900 (Closed): Excessive heap consuption in RegistrationWorkingsetEditor with big workingsets

Adding a new name to the registration workingset *Kulikovskiy, M., Lange-Bertalot, H., Metzeltin, D. & al. - Lake B...
Andreas Kohlbecker
12:31 PM Revision 501ab766 (taxeditor): ref #7875 Completely convert area selection to DTOs
- Fix initial selection Patrick Plitzner
12:01 PM Revision eebb08aa (taxeditor): ref #7887 Use term DTOs in feature selection dialog for feature trees
Patrick Plitzner
11:10 AM feature request #7899: enable orthographic name correction in Vaadin
Note: The term "orthographic variant" is to broad for our case, because it includes also variants in different public... Wolf-Henning Kusber
10:56 AM feature request #7899 (Closed): enable orthographic name correction in Vaadin
Subject: validly published names are in (up to) 10% not correctly formed according to the rules of the ICN. Such name... Wolf-Henning Kusber
09:18 AM Revision a1ab6a74 (cdmlib): ref #7887 Implement term service methods based on DTOs
Patrick Plitzner
09:17 AM report #7898: using jstack on cdmserver with jsvc reports all non native thrads as BLOCKED

Conclusion: jsvc makes it harder to analyse performance problems on the servers since jstack can not be used to get...
Andreas Kohlbecker
09:17 AM report #7898 (Resolved): using jstack on cdmserver with jsvc reports all non native thrads as BLO...
Andreas Kohlbecker
09:08 AM report #7898 (In Progress): using jstack on cdmserver with jsvc reports all non native thrads as ...
Andreas Kohlbecker
09:16 AM Revision a3c56b93 (taxeditor): ref #7887 Use DTOs in term editor
Patrick Plitzner
09:02 AM Revision e6715122 (cdmlib): ref #7887 Rename service methods
Patrick Plitzner
08:50 AM Revision 238ef41a (taxeditor): ref #7887 Fix showViewer() for details view
Patrick Plitzner
08:46 AM Revision 06c08a41 (taxeditor): Fix javadoc
Patrick Plitzner

11/08/2018

06:47 PM report #7898: using jstack on cdmserver with jsvc reports all non native thrads as BLOCKED
next thing to test: start cdm-server without jsvc and analyze the stacks again. Andreas Kohlbecker
06:27 PM report #7898 (Resolved): using jstack on cdmserver with jsvc reports all non native thrads as BLO...
in the cdm-server many threads are blocked.
Analysis of this situation:
(*Used tool: http://fastthread.io*)
...
Andreas Kohlbecker
05:54 PM Revision d101c9cc (cdm-server): eclipse launchers for cdm-webapp and cdmlib-remote-webapp
Andreas Kohlbecker
05:23 PM Revision 82006e78 (cdm-vaadin): ref #7559 referencing issue in comments
Andreas Kohlbecker
03:53 PM Revision 8456b28f (cdmlib): ref #7887 Pass DTO to move method
Patrick Plitzner
03:47 PM Revision eca23fcf (cdmlib): Merge branch 'develop' into termService
Patrick Plitzner
03:46 PM Revision ebc80cbb (cdmlib): try to fix CCE when using OrderedTermVocabulary.getSortedSetOfTerms
Andreas Müller
03:37 PM Revision db5a6115 (taxeditor): Merge branch 'develop' into areaSelect
Patrick Plitzner
03:35 PM Revision 347e9ab8 (cdmlib): Merge branch 'develop' into termService
Patrick Plitzner
03:33 PM Revision 83d112e1 (cdmlib): try to fix CCE when using OrderedTermVocabulary.getEqualTerms
Andreas Müller
03:17 PM bug #7882 (Duplicate): TeamOrPersonField: exception when selecting author
Andreas Kohlbecker
03:15 PM bug #7881: reference selection combobox broken after error in ...
this is most probably a duplicate of #7559 Andreas Kohlbecker
03:12 PM Revision 7bbbad58 (cdm-vaadin): restoring accidentally removed formatter code
Andreas Kohlbecker
03:03 PM bug #7892: RegistrationWorkingsetEditor: LIE creating new name for book section
Test 1 (test system): Book entered as admin into Vaadin, Book section as submitter in vaadin, new name and type for e... Wolf-Henning Kusber
02:46 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Der selbe Fehler war nun reproduzierbar!
http://api.cybertaxonomy.org/phycobank/app/registration#!workingset/b52f4...
Andreas Kohlbecker
02:41 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Genau: es ist 2 x der gleiche String mit unterschiedlicher Referenz, daher Neueingabe.

Ich habe versucht den Fehl...
Andreas Kohlbecker
02:41 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
> Ich hatte Abas berolinensis A.Braun eingegeben,
> dann als validated name noch mal Abas berolinensis neu eingegebe...
Andreas Kohlbecker
02:40 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Kann es nicht mehr sagen, konnte es auch nicht nachvollziehen

Ich hatte Abas berolinensis A.Braun eingegeben,
da...
Andreas Kohlbecker
02:40 PM bug #7897: TeamOrPersonField: BindException: The given field is not part of this FieldBinder
Hast du noch ein paar mehr details für mich?

1. Welcher Name,
2. Welcher validated Name dazu?
3. Welchen Auto...
Andreas Kohlbecker
02:40 PM bug #7897 (Duplicate): TeamOrPersonField: BindException: The given field is not part of this Fiel...
Testsystem:
http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/537f9b7b-42d4-4b40-949b-1b6...
Andreas Kohlbecker
02:36 PM bug #7559 (Resolved): possibly corrupted hiberante session after previous error on saving editor
hopefully fixed now completely Andreas Kohlbecker
02:30 PM bug #7559: possibly corrupted hiberante session after previous error on saving editor
even if the session is cleared in the `CdmStore.saveBean(T bean, AbstractView view)` method in the finally clause, a ... Andreas Kohlbecker
01:58 PM bug #7559 (In Progress): possibly corrupted hiberante session after previous error on saving editor
reopening this issue since it is not fully solved for all cases Andreas Kohlbecker
02:35 PM Revision 6d2a0540 (cdm-vaadin): ref #7559 always clearing session in CdmFilterablePagingProvider
Andreas Kohlbecker
01:58 PM Revision 42ec127d (taxeditor): ref #7887 Pass DTO to move method
Patrick Plitzner
01:55 PM Revision c78fd1ac (cdm-vaadin): improving error messaging: PopupEditorException with editor conte...
Andreas Kohlbecker
01:35 PM Revision 244ab5da (taxeditor): ref #7829 fix compilation errors after changes for !MatchStrategy ...
Andreas Müller
01:15 PM Revision 2843ea50 (taxeditor): ref #7829 fix missing getMatchModeName in TaxEditor
Andreas Müller
12:50 PM bug #7896 (Closed): NPE, NullPointerException in RelationshipTermBase

~~~
[flora-malesiana] 2018-11-08 12:24:42,410 INFO [qtp1207140081-129] [eu.etaxonomy.cdm.remote.controller.Taxon...
Andreas Kohlbecker
12:48 PM bug #7895 (New): registrationWorkingSetDTO/{uuid} fails due IndexOutOfBoundsException in Registra...
~~~
[palmae] 2018-11-08 12:28:50,646 INFO [qtp1207140081-933] [eu.etaxonomy.cdm.remote.controller.RegistrationDTOCon...
Andreas Kohlbecker
12:37 PM feature request #7894 (In Progress): [CHECK] Import sourceNumber as Identifier for references
Andreas Müller
12:26 PM feature request #7894 (Resolved): [CHECK] Import sourceNumber as Identifier for references
Andreas Müller
12:33 PM Revision f2e74d5a (cdmlib-apps): improve reference import for E+M (edition and volume handling)
Andreas Müller
12:32 PM Revision 8cf6f634 (cdmlib-apps): ref #7894 import source numbers for E+M
Andreas Müller
12:27 PM Revision 8fa67d4b (cdmlib): ref #7894 add E+M sourceNumber voc uuid
Andreas Müller
12:21 PM Revision b3d38029 (cdmlib): cleanup
Andreas Müller
12:20 PM Revision fbe910aa (cdmlib): ref #7829, ref #7800 improve nom. ref. matcher (also changes the resu...
Andreas Müller
12:10 PM Revision 269cc178 (cdmlib): revert: Add series parsing with letters (test) - all unwanted commits
Andreas Müller
12:04 PM Revision 4cab2fd1 (cdmlib): Add series parsing with letters (test)
Andreas Müller
12:01 PM Revision 943941be (cdmlib): add parsing of brackets with "&"
Andreas Müller
11:57 AM Revision 473b1c68 (cdmlib): Add series parsing with letters
Andreas Müller
11:56 AM Revision f6687505 (cdmlib): add regEx negation to UTF8
Andreas Müller
11:44 AM Revision e9311cd0 (taxeditor): ref #7887 Prompt user if editor is dirty (part II)
Patrick Plitzner
11:23 AM Revision ea7c58af (taxeditor): ref #7887 i18n
Patrick Plitzner
11:20 AM Revision 5129bf4e (taxeditor): ref #7887 Prompt user if editor is dirty
Patrick Plitzner
11:16 AM Revision 897bf684 (cdmlib): ref #7887 Fix kindOf query
Patrick Plitzner
11:15 AM Revision 8f2a9479 (taxeditor): ref #7887 Get kindOfs in term content provider
Patrick Plitzner
10:47 AM Revision a258603e (cdmlib): fix parser test
Andreas Müller
10:26 AM Revision 62e62a2f (cdmlib): some improvements to NonViralNameParser
Andreas Müller
10:19 AM Revision f98c2d3d (cdmlib): cleanup
Andreas Müller
10:19 AM Revision 8643e56e (cdmlib): ref #7429 fix order in "publ." parsing and implement for nom. ref. p...
Andreas Müller
10:19 AM Revision cfec8840 (cdmlib): cleanup
Andreas Müller
09:54 AM Revision 325e86cf (taxeditor): ref #7887 Convert delete handler/operation to DTOs
Patrick Plitzner
09:53 AM Revision 1a082a11 (taxeditor): ref #7887 Add generalizations to term content provider
Patrick Plitzner
09:50 AM Revision 1955a290 (cdmlib): ref #7887 Fix potential NPE
Patrick Plitzner
09:50 AM Revision d45330ac (cdmlib): ref #7887 Add generalizations to term DTO
Patrick Plitzner
09:49 AM Revision b3c5aff0 (cdmlib): ref #7887 Fix term moving to new vocabulary
Patrick Plitzner
09:02 AM Revision 3d5dce41 (taxeditor): ref #7887 Implement moving terms for ordered terms
Patrick Plitzner
08:58 AM Revision f740afa5 (cdmlib): ref #7887 Implement moving terms for ordered terms
Patrick Plitzner
 

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