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feature request #7434

open

while importing sequences it should be possible to download fasta file

Added by Katja Luther over 4 years ago. Updated almost 4 years ago.

Status:
New
Priority:
Highest
Assignee:
Category:
cdmadapter
Start date:
Due date:
% Done:

0%

Estimated time:
Severity:
normal
Tags:

Description

for the blast search we need fasta files of the sequences to create the BLAST DB. Therefore it should be possible to download this sequence file and add it to the BLAST DB.

For Biocase Import the URI of the sequence file can be find in ConsensusSequenceChromatogramFileURI:

  • collect the uris
  • download them to a project specific path
  • update the BLAST DB (path should be a project property) -> add the new fasta files to the complete Fasta file and create a new BLAST DB
Actions #1

Updated by Katja Luther over 4 years ago

  • Tags changed from gb, abcd to abcd, gbol
Actions #2

Updated by Katja Luther over 4 years ago

  • Description updated (diff)
Actions #3

Updated by Katja Luther over 4 years ago

  • Description updated (diff)
Actions #4

Updated by Andreas Müller over 4 years ago

  • Assignee set to Katja Luther
Actions #5

Updated by Andreas Müller over 4 years ago

  • Target version changed from Release 5.1 to Release 5.2
Actions #6

Updated by Andreas Müller over 4 years ago

  • Target version changed from Release 5.2 to Release 5.3
Actions #7

Updated by Andreas Müller over 4 years ago

  • Target version changed from Release 5.3 to Release 5.4
Actions #8

Updated by Andreas Müller over 4 years ago

  • Target version changed from Release 5.4 to Release 5.5
Actions #9

Updated by Andreas Müller over 4 years ago

Can you please add a category?

Actions #10

Updated by Katja Luther over 4 years ago

  • Category set to cdmadapter
Actions #11

Updated by Andreas Müller almost 4 years ago

  • Target version changed from Release 5.5 to Release 5.6
Actions #12

Updated by Andreas Müller almost 4 years ago

  • Target version changed from Release 5.6 to Reviewed Next Major Release
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