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feature request #7434

while importing sequences it should be possible to download fasta file

Added by Katja Luther over 1 year ago. Updated 6 months ago.

Status:
New
Priority:
Highest
Assignee:
Category:
cdmadapter
Start date:
05/23/2018
Due date:
% Done:

0%

Severity:
normal
Tags:

Description

for the blast search we need fasta files of the sequences to create the BLAST DB. Therefore it should be possible to download this sequence file and add it to the BLAST DB.

For Biocase Import the URI of the sequence file can be find in ConsensusSequenceChromatogramFileURI:

  • collect the uris
  • download them to a project specific path
  • update the BLAST DB (path should be a project property) -> add the new fasta files to the complete Fasta file and create a new BLAST DB

Associated revisions

Revision ee6e93fe (diff)
Added by Katja Luther over 1 year ago

ref #7434: remember sequence uris for downloading the files at the end of the import

History

#1 Updated by Katja Luther over 1 year ago

  • Tags changed from gb, abcd to abcd, gbol

#2 Updated by Katja Luther over 1 year ago

  • Description updated (diff)

#3 Updated by Katja Luther over 1 year ago

  • Description updated (diff)

#4 Updated by Andreas Müller about 1 year ago

  • Assignee set to Katja Luther

#5 Updated by Andreas Müller about 1 year ago

  • Target version changed from Release 5.1 to Release 5.2

#6 Updated by Andreas Müller about 1 year ago

  • Target version changed from Release 5.2 to Release 5.3

#7 Updated by Andreas Müller 12 months ago

  • Target version changed from Release 5.3 to Release 5.4

#8 Updated by Andreas Müller 10 months ago

  • Target version changed from Release 5.4 to Release 5.5

#9 Updated by Andreas Müller 10 months ago

Can you please add a category?

#10 Updated by Katja Luther 10 months ago

  • Category set to cdmadapter

#11 Updated by Andreas Müller 6 months ago

  • Target version changed from Release 5.5 to Release 5.6

#12 Updated by Andreas Müller 6 months ago

  • Target version changed from Release 5.6 to Reviewed Next Major Release

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