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From 02/06/2017 to 03/07/2017

03/07/2017

06:47 PM Revision 39f90195 (cdm-vaadin): improved list view on registrations
Andreas Kohlbecker
06:05 PM task #6258: Add Registration to cdm model
We need to be able to associate Registrations with Users and CRUD of Registrations need to be controlled via GrantedA... Andreas Kohlbecker
02:45 PM task #6258: Add Registration to cdm model
A registration in progress can be dependant on another registration which needs to be completed before it is possible... Andreas Kohlbecker
04:22 PM bug #6432: Apply CSS only to non-admin pages
Ja, aber das Problem ist ja nicht direkt mit dem Theme, sondern wo benötigt das cdm_dataportal welche CSS regeln.
Zu...
Saskia Gennrich
03:59 PM bug #6432: Apply CSS only to non-admin pages
Hast du das auch mit dem 'garland_cichorieae'-Theme getestet? Andreas Kohlbecker
03:30 PM bug #6432 (Resolved): Apply CSS only to non-admin pages
Ich konnte das leider nicht reproduzieren.
Habe das CSS ein bisschen refactored. CSS für die Settings Tabelle wird a...
Saskia Gennrich
03:28 PM Revision f8485a00 (taxeditor): ref #5691: avoid invalid thread access in referencing object view ...
Katja Luther
03:25 PM Revision 69174a0f (cdm-dataportal): ref #6432 more fine tuned inclusion of css.
CSS rules for admin/config/cdm_dataportal/settings are included
on all settings rule.
CSS rules for the debug block a...
Saskia Gennrich
03:25 PM Revision e4272e1b (cdm-dataportal): fix #6442 p tags as additional option to enclose description ...
Andreas Kohlbecker
03:25 PM Revision 067f2cef (cdm-dataportal): adapting new lines in test to modified interpretation in brow...
Andreas Kohlbecker
03:25 PM Revision 3b66f831 (cdm-dataportal): ref #6375 adapting test case
Andreas Kohlbecker
03:25 PM Revision 36401692 (cdm-dataportal): adapting new lines in test to modified interpretation in brow...
Andreas Kohlbecker
03:25 PM Revision 33e736bb (cdm-dataportal): fixing 2 bugs in media caption creation
Andreas Kohlbecker
03:25 PM Revision 3fa9d0bd (cdm-dataportal): palmweb: disabling custom media caption theme function
Andreas Kohlbecker
03:25 PM Revision c62c32d5 (cdm-dataportal): improving documentation
Andreas Kohlbecker
03:25 PM Revision 6ddc6fc6 (cdm-dataportal): fix #6375 removing 'sensu' from footnote text
Andreas Kohlbecker
03:25 PM Revision 370f64c7 (cdm-dataportal): fix #6431 fixing extlinks for genus pages
Andreas Kohlbecker
03:25 PM Revision f7e45a96 (cdm-dataportal): ref #6431 adding missing class attribute for pseudoFeatures
Andreas Kohlbecker
03:02 PM bug #5691 (Feedback): Referencing objects view makes editor inresponsive if an object references ...
Andreas Müller
03:02 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
Unfortunately it still exists. I opened my test database rem_conf_am on edit_test and opened taxon Abies testus notho... Andreas Müller
01:38 PM bug #5691 (Resolved): Referencing objects view makes editor inresponsive if an object references ...
please check whether the exception occurs again. Katja Luther
02:56 PM task #1606 (Resolved): Restrict filtered selection of in references to the respective reference t...
please review Katja Luther
02:55 PM Revision fd482224 (cdmlib): ref #1606: fix exception for pattern ? in reference selection dialog
Katja Luther
02:26 PM Revision fd29bcac (taxeditor): ref #6315: add message that if no reference is chosen the sec refe...
Katja Luther
02:11 PM Revision 63f3c747 (taxeditor): ref #6315: avoid NPE if new entity is created from filteredSelecti...
Katja Luther
01:37 PM bug #6479 (Resolved): Class Cast Exception when trying to delete a misapplication
This was fixed, see the associated revision.
Katja Luther
10:59 AM Revision 484f8526 (taxeditor): ref #5691 Only have on update job at a time for ReferencingObjects...
Patrick Plitzner
10:14 AM feature request #6482 (New): Simplify adding of repeating data like sources
WGB: beim Eingeben multipler Facts aus einer Quelle nervt das wiederholte Aufrufen der Referenz auf die Dauer (und vi... Andreas Müller

03/06/2017

06:07 PM Revision 12b37588 (cdm-vaadin): initial list view on registrations
Andreas Kohlbecker
04:31 PM Revision cd80312e (taxeditor): ref #4611 Fix Messages.java bundle path
Patrick Plitzner

03/03/2017

02:59 PM Revision c33e979b (cdm-vaadin): ref #6169 preparing for opening name editor
Andreas Kohlbecker
02:10 PM Revision 144952dc (cdmlib): cleanup
Andreas Müller
01:56 PM Revision 0b44c814 (cdm-vaadin): ref #6169 using mvp for the RegistrationWorkflowView
Andreas Kohlbecker
12:04 PM Revision 7b6f4230 (cdm-vaadin): adding spring-mvp framework
Andreas Kohlbecker
11:54 AM Revision 67aa5f47 (cdm-vaadin): removing unused class ValoMenuLayout
Andreas Kohlbecker
11:53 AM task #6481: Sort out synonym relationships with 2 invalid taxa (Edaphobase)
Fälle für die die Lösung nicht gilt:
~~~ sql
SELECT sr.synonym_role, s.parent_taxon_fk synParent, t.parent_taxon_...
Andreas Müller
11:27 AM bug #6447 (Rejected): advanced search doesn't return results
Damit kann das ticket also als 'rejeceted' geschlossen werden da es sich ja nicht wirklich um einen Bug gehandelt hat. Andreas Kohlbecker
11:22 AM bug #6447 (Resolved): advanced search doesn't return results
Damit die "Advanced Search" funktioniert muss vorher der Freetext index gebaut werden unter /admin/config/cdm_datapor... Saskia Gennrich
11:17 AM Revision 1ca00ef0 (cdm-vaadin): ref #6169 more complete workflow view
Andreas Kohlbecker
09:09 AM Revision 59eb4451 (cdm-vaadin): ref #6169 initial concept fo a workflow view
Andreas Kohlbecker

03/02/2017

11:21 PM task #6481 (In Progress): Sort out synonym relationships with 2 invalid taxa (Edaphobase)
Synonymbeziehungen (congruent) mit 2 invaliden Taxa:
**LÖSUNG:** Diese Taxa scheinen alle in 2 Beziehungen zu sein...
Andreas Müller
04:43 PM bug #6480 (Feedback): Re-saved by cascade in specimen bulk editor
When trying to delete a specimen that belongs to a field unit and that does have a sibling specimen I get the followi... Andreas Müller
04:36 PM bug #6479: Class Cast Exception when trying to delete a misapplication
This happened regularly in v4.5.1 but I could not reproduce in 4.6-SNAPSHOT. Was it fixed in the meanwhile or is it d... Andreas Müller
04:28 PM bug #6479 (Closed): Class Cast Exception when trying to delete a misapplication

~~~
login : admin
editor version : 4.5.1
server : api.cybertaxonomy.org (cybertaxonomy.org) / caryo_nepenthaceae...
Andreas Müller
04:26 PM bug #6478 (New): We need a count for bulk editors
In the specimen tree editor we already do have a count in the status line which is very helpful.
Which should have t...
Andreas Müller
04:24 PM bug #6477 (Closed): Show collection name in specimen editor if no collection code exists
Currently it only shows [-] if no collection code exists. But there are some collections that do not have a code. Andreas Müller
04:22 PM bug #6476 (New): Remove MediaRepresentation and MediaRepresentationPart from Referencing objects ...
Compare with annotations, etc...
First check if this needs to be done in cdmlib or in TaxEditor.
Btw. we need t...
Andreas Müller
04:18 PM feature request #6475 (Closed): Make specimen tree editor collapsable and expandable
It would be nice to have the specimen tree editor collapsable and expandable
That makes it easier to search certai...
Andreas Müller
04:15 PM task #6474 (Duplicate): Move Specimen-Editor to bulk editor menu
Currently the Specimen-Editor opens via Windows-Show Views.
This is incorrect as the Specimen-Editor is not a view...
Andreas Müller
04:09 PM bug #6473 (Closed): Marker by default should be true
If one creates a new marker the default value is false.
In most cases, when you add a marker you may want to set i...
Andreas Müller
03:57 PM feature request #6472 (Closed): Include keys as target for IntextReferences
Examples that need to be updated when this is implemented:
* http://caryophyllales.org/nepenthaceae/cdm_dataportal...
Andreas Müller
03:39 PM feature request #6471 (New): Show description text for individuals association
Individuals association has a multi-language text attribute "description". This should be shown in the specimen area ... Andreas Müller
03:26 PM bug #6470 (New): Show annotations on specimen
This is true for both view, the compressed table view and the default view.
An example you find at http://caryophy...
Andreas Müller
03:08 PM Revision 3f1ceae0 (cdm-vaadin): ref #6169 more views for starting registrations and basic branding
Andreas Kohlbecker
12:40 PM bug #6469 (New): Types longer than 1 line should have an identation
Otherwise it is difficult to read, especially when multiple types exist Andreas Müller
12:38 PM bug #6468 (New): sec and sensu not correct if misapplied name relationship reference exists
Currently, if a misapplied name taxon has a secundum reference and a misapplied name relationship reference something... Andreas Müller
12:31 PM feature request #6467 (Duplicate): [DISCUSS] Abbreviated first name for person
To better format persons in references, names, ... we maybe need an additional field abbreviated first name.
Otherwi...
Andreas Müller
12:13 PM bug #6466 (Closed): IndexOutOfBoundsException when entering month
When entering the month for a field unit using "22" I got an IndexOutOfBounds (IOOB) exception.
Instead we expect ...
Andreas Müller
12:08 PM feature request #6465 (New): History for search
A history droptdown, that shows the 10(?) latest searches and makes them selectable would be a nice additional featur... Andreas Müller
12:05 PM bug #6464 (New): UUID can not be null exception when trying to delete a SingleRead
When trying to delete a single read from a specimen in cichorieae test db (test server) I got
~~~
login : admin
...
Andreas Müller
11:55 AM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
Invalid thread access still exists. Happened when editing specimen data in specimen editor.
~~~
login :
editor ...
Andreas Müller
11:46 AM bug #6431 (Closed): php INFO 'warnings' in fauna europeae taxon page
Andreas Kohlbecker
11:43 AM bug #6431 (Resolved): php INFO 'warnings' in fauna europeae taxon page
Applied in changeset commit:cdm-dataportal|e5f17100c16258bff550d964795bc5c12168f9a2. Andreas Kohlbecker
11:45 AM bug #6463 (New): Removing a type designation from the name or specimen does not delete the type d...
The type designation record itself stays in the database.
This needs some discussion:
* if removing a type desi...
Andreas Müller
11:43 AM Revision e5f17100 (cdm-dataportal): fix #6431 fixing extlinks for genus pages
Andreas Kohlbecker
11:39 AM Revision 9e7ae433 (cdm-dataportal): ref #6431 adding missing class attribute for pseudoFeatures
Andreas Kohlbecker
11:34 AM bug #6462 (New): Changing specimen in type designation should not set dirty flag
Currently, if one opens a specimen via type designation details view and changes it, the dirty flag is set in the nam... Andreas Müller
11:26 AM bug #6461 (New): Palmweb use records do not correctly implement the feature block setting rules
The rule for the name in source is:
---
**Link to name used in source:**
Whether to show name is source info...
Andreas Kohlbecker
11:25 AM feature request #6460 (New): Refactor referencing objects in a way that supplemental data know wh...
Currently the referencing objects view does not give much information about e.g. original sources. As the source does... Andreas Müller
11:15 AM bug #6459 (In Progress): Implement deduplication for IntextReferences
Andreas Müller
11:15 AM bug #6459 (Closed): Implement deduplication for IntextReferences
Currently if references are merged the markup text referenced by an IntextReference using this reference is not chang... Andreas Müller
11:13 AM feature request #6458 (New): Syn. nov. for synonyms
Syn. nov. is a synonym information that refers to the secundum reference of the synonym.
Therefore we need either ...
Andreas Müller
11:09 AM feature request #6457 (New): Views should be available via right mouse click
Often one wants to have a look to certain aspect of a record displayed in some editor that requires opening an extra ... Andreas Müller
11:06 AM Revision a2196313 (cdm-dataportal): improving documentation
Andreas Kohlbecker
11:01 AM feature request #6456 (New): Make Misapplied names visible in concept relation view via configura...
Currently misapplied name relationships are not shown at all in the concept relationship view.
It should be configur...
Andreas Müller
10:53 AM bug #6455 (Closed): Remove not possible for country in field/derived unit details view
Once a country is selected it can not be removed anymore, only replaced. This is due to a missing remove button. Andreas Müller
10:17 AM Revision e9aae730 (cdm-dataportal): ref #6375 adapting test case
Andreas Kohlbecker
10:11 AM bug #6432 (Feedback): Apply CSS only to non-admin pages
Hi Saskia,
your commit causes a problem in the admin settings area of portals using an other theme that the "CDM D...
Andreas Kohlbecker
09:45 AM bug #5286 (Closed): seemingly duplicate distributions
Andreas Kohlbecker
09:43 AM bug #6454 (Closed): NumberWithLabelElement.getFloat and .getInteger should return null
Currently it both return 0 if textfield is empty. In some cases this leads to value "0" while null is required.
Befo...
Andreas Müller
09:36 AM bug #6453 (Resolved): Deleting text from min/max fields throws NPE
Applied in changeset commit:taxeditor|66b9cc46fdfd1938cb1f69b6191e9967995d8cf9. Andreas Müller
09:21 AM bug #6453 (In Progress): Deleting text from min/max fields throws NPE
Andreas Müller
09:20 AM bug #6453 (Closed): Deleting text from min/max fields throws NPE
E.g. for GatheringEvent
~~~
login : admin
editor version : 4.5.1
server : api.cybertaxonomy.org (cybertaxonomy....
Andreas Müller
09:36 AM Revision 66b9cc46 (taxeditor): fix #6453 fix NPE in min/max
Andreas Müller
09:36 AM Revision 126723a8 (taxeditor): cleanup
Andreas Müller
08:02 AM Revision 6469b938 (cdm-vaadin): ref #6169 responsive dashboard
Andreas Kohlbecker
07:57 AM Revision 8d1195dc (cdm-vaadin): removing old unused deigns
Andreas Kohlbecker

03/01/2017

12:47 AM bug #6450: New reference with only the protected titleCache set is not found in reference select ...
The problem probably is the wrong selection of the search string. If we search for a nomenclatural reference we must ... Andreas Müller
03:25 PM bug #6450 (New): New reference with only the protected titleCache set is not found in reference s...
If you choose "new Reference" in the reference selection dialog and you enter a new reference with a protected titleC... Andreas Müller
07:46 PM feature request #3742 (Feedback): Display altitude, distance to Ground and watersurface correctly...
There are 2 open issues:
* null values should not be shown as 0, but should be considered as being empty. If all...
Andreas Müller
06:05 PM bug #5286 (Feedback): seemingly duplicate distributions
For the issue described in #4411#note-13 I opened a new ticket #6452.
I guess this ticket here can be closed then....
Andreas Müller
06:01 PM feature request #6452: Filter for equal and single subareas
To me there is 1 open question: for maps it sometimes makes sense to have areas only from one level and therefore we ... Andreas Müller
05:54 PM feature request #6452 (New): Filter for equal and single subareas
To avoid duplications in distribution representations it is suggested in #4411#note-13 and #5286 to add an option to ... Andreas Müller
05:21 PM task #6451 (New): Change label "Next" in Specimen Assistant to Advanced, Detail, ...
This is a wish from the BGBM User meeting #4031 Andreas Müller
04:11 PM bug #6349 (Closed): Fix media description handling
Looks good Andreas Müller
03:50 PM task #3603 (Closed): Remove creation of dummy DefinedTerm when creating new Term related entities
Still don't find ModifierSection and ModifierEditorInput. But for the first 2 (PK scope is enabled now) it works as e... Andreas Müller
03:34 PM bug #6309 (Closed): Creating an existing user throws exception
Seems to work Andreas Müller
03:31 PM bug #6439 (Closed): Add (Heft xxx) as part of volume to name parser
Andreas Müller
03:15 PM bug #6449 (In Progress): Nomenclatural references with protected titleCache are not shown correct...
Andreas Müller
03:15 PM bug #6449 (Closed): Nomenclatural references with protected titleCache are not shown correctly in...
A name with a nomenclatural reference that has only a protected titleCache but not a title, abbrev title or abbrevTit... Andreas Müller
03:08 PM feature request #4490 (Closed): Make the label of the taxon page tabs customizable for portal admins
Andreas Müller
03:07 PM bug #6192: taxon annotations only shown when 'Show accepted taxon on top of the synonymy' is en...
... until then I suggest to implement it within the synonymy as the synonymy is the most likely place the annotation ... Andreas Müller
03:04 PM bug #6192: taxon annotations only shown when 'Show accepted taxon on top of the synonymy' is en...
This needs to be discussed during the BGBM user meeting #6297 Andreas Müller
02:55 PM bug #4390 (Feedback): Titlecache of field unit does not update when changing field unit data via ...
The issue itself seems to be fixed and can be closed.
I opened a related ticket for refreshing the field unit + sib...
Andreas Müller
02:39 PM bug #4390: Titlecache of field unit does not update when changing field unit data via derived uni...

This second parameter in this code to me does not make sense. Is always *false* IMO.
~~~ java
if (!specimen....
Andreas Müller
02:53 PM bug #6448 (New): Update of field unit in details view of derived unit does not update field unit ...
If e.g. locality is changed in derived unit details view in the specimen bulk editor the according field unit record ... Andreas Müller
02:39 PM Revision 958adbe2 (cdmlib): ref #4390 adapt boolean value for protected
Andreas Müller
02:38 PM bug #6447 (Rejected): advanced search doesn't return results
When I try to do an advanced search i don't get any results. Even though the simple search returns results.
The qu...
Saskia Gennrich
02:34 PM feature request #6361 (In Progress): [MASTER] Merge all TaxonName classes into 1 class
Andreas Müller
02:32 PM feature request #6369 (Closed): Create interfaces for TaxonName types
We close this. The remaining tasks will be done when really merging everything. Andreas Müller
02:31 PM bug #6365 (Closed): Merge botanical and zoological names into TaxonNameBase
We close this. The remaining tasks will be done when really merging everything.
External applications will be hand...
Andreas Müller
02:28 PM bug #6446 (Closed): Merge botanical and zoological names into TaxonNameBase in external applications
e.g. TaxEditor Andreas Müller
02:26 PM task #6362 (Closed): Remove occurrence of NonViralName in code
We close this. The remaining tasks will be done when really merging everything.
Occurrences in external applicatio...
Andreas Müller
02:24 PM task #6445 (Closed): Remove occurrence of NonViralName in external applications (TaxEditor etc.)
Andreas Müller
02:22 PM task #6366 (Closed): Merge cultivar names into TaxonNameBase
We close this. The remaining tasks will be done when really merging everything. Andreas Müller
02:21 PM task #6364 (Closed): Merge viral names and bacterial names into TaxonNameBase
We close this. The remaining tasks will be done when really merging everything. Andreas Müller
02:21 PM task #6360 (Closed): Move NonViralName functionality to TaxonNameBase
We close this. The remaining tasks will be done when really merging everything. Andreas Müller
01:42 PM bug #6440: Improve IPNI Name Service
All issues fixed except for the nom.ref. issue => #6444 Andreas Müller
01:16 PM bug #6440 (Resolved): Improve IPNI Name Service
Applied in changeset commit:cdmlib|11f80cdfa3ef9f8255aa448316b7200e59c598b2. Andreas Müller
01:41 PM bug #6444 (New): Improve reference handling for IPNI name service
IPNI name service import is difficult to map for nom. references. Probably this can still be improved.
IPNI has ti...
Andreas Müller
01:37 PM Revision 913eceea (cdmlib): fix #6440 fix IPNI name service test
Andreas Müller
01:16 PM Revision 11f80cdf (cdmlib): fix #6440 implement logging for hybrids in IPNI service
Andreas Müller
01:06 PM Revision 43b500aa (cdmlib): ref #6440 fix most of the IPNI name service issues
Andreas Müller
12:53 PM bug #6432 (Resolved): Apply CSS only to non-admin pages
The fix for this issue is now in the develop branch, so that it will be deployed to the test server. I now can test a... Andreas Kohlbecker
12:49 PM Revision 8fc089e1 (cdm-dataportal): ref #6432 apply css only to non-admin pages
Saskia Gennrich
12:12 PM Revision 1a0eb64e (cdm-vaadin): Merge branch 'responsive-ui-framework' into develop
Andreas Kohlbecker
11:56 AM feature request #6443 (New): Feature block settings: enable sorting of TextData elements
The FeatureBlock settings offer an option to sort the elements this is working only for a few features.
Alphabetic...
Andreas Kohlbecker
11:52 AM feature request #6442: Feature block settings: margins for data in block level elements
I removed the style
~~~css
#Notes .DescriptionElement-TextData {
margin-bottom: 1em;
}
~~~
again from th...
Andreas Kohlbecker
11:49 AM feature request #6442 (Resolved): Feature block settings: margins for data in block level elements
Applied in changeset commit:cdm-dataportal|29f63b48d79e7fa3af080758ee0a261ede9c9d0f. Andreas Kohlbecker
11:30 AM feature request #6442 (Feedback): Feature block settings: margins for data in block level elements
If `div` is selected for the enclosing tag it is often desirable to display the resuling text blocks as paragraphs wi... Andreas Kohlbecker
11:48 AM Revision 29f63b48 (cdm-dataportal): fix #6442 p tags as additional option to enclose description ...
Andreas Kohlbecker
11:44 AM bug #6375: footnotes on sensu references must not be prefixed with 'sensu'
please review after the release has been deployed, the test case mentioned in the issue description no longer exists,... Andreas Kohlbecker
11:39 AM bug #6375 (Resolved): footnotes on sensu references must not be prefixed with 'sensu'
Applied in changeset commit:cdm-dataportal|2ce2594abfc0cf93cf72c56332376f02197d5f8b. Andreas Kohlbecker
11:38 AM Revision 2ce2594a (cdm-dataportal): fix #6375 removing 'sensu' from footnote text
Andreas Kohlbecker
10:31 AM Revision d818257c (cdmlib): cleanup
Andreas Müller
10:29 AM Revision 4abc3175 (cdm-vaadin): renaming package and adding LICENSE and README for ui framework
Andreas Kohlbecker
10:04 AM Revision c3b9b63b (cdm-vaadin): adding license for package taken from vaadin
Andreas Kohlbecker
09:55 AM Revision 3ba3b821 (cdm-vaadin): moving cdm popoupeditor to other package
Andreas Kohlbecker
09:54 AM Revision 9b182365 (cdm-vaadin): porting the PopupEditor to spring and cdm
Andreas Kohlbecker

02/28/2017

05:22 PM Revision 9a2ea914 (cdm-vaadin): manual testing of working navigation
Andreas Kohlbecker
05:15 PM bug #6441 (New): FE Areas in advanced search arent sorted
List of Areas in advanced search aren't sorted in any way (http://test.e-taxonomy.eu/dataportal/preview/fauna-europae... Saskia Gennrich
02:45 PM Revision 157460f4 (cdm-vaadin): working NavigationManagerBean, easier VaadinSpringNavigatorConfig...
Andreas Kohlbecker
11:57 AM bug #6440 (Closed): Improve IPNI Name Service
thinks to improve
* Remove empty annotations, basionyms, basionym authors, ...
* Use Configurator instead of pa...
Andreas Müller
10:44 AM bug #6432 (Feedback): Apply CSS only to non-admin pages
Saskia Gennrich
07:55 AM Revision 2b4fe0bb (cdm-dataportal): adapting new lines in test to modified interpretation in brow...
Andreas Kohlbecker

02/27/2017

06:22 PM Revision 43e0fe91 (cdm-vaadin): replacing Vaadin4Spring Event Bus by Spring ApplicationEventPubli...
Andreas Kohlbecker
01:33 PM Revision e2caccfd (cdm-vaadin): ignoring vaadin designer files
Andreas Kohlbecker
01:33 PM Revision a5f65726 (cdm-vaadin): attempt to create a responsive layout with menu
Andreas Kohlbecker
01:33 PM Revision c62d792f (cdm-vaadin): ignoring vaadin designer settings
Andreas Kohlbecker
01:33 PM Revision 2d703592 (cdm-vaadin): adding a valo bases edit theme
Andreas Kohlbecker
01:33 PM Revision c850e7a9 (cdm-vaadin): attempt to create a responsive layout with menu
Andreas Kohlbecker
01:33 PM Revision f97b0886 (cdm-vaadin): initial UI class for the phycobank
Andreas Kohlbecker
01:33 PM Revision 15f46faf (cdm-vaadin): ref #6169 initial design for main application
Andreas Kohlbecker
01:33 PM Revision 683a331c (cdm-vaadin): porting the devday 2016 ui framework to spring - not fully working
Andreas Kohlbecker
01:33 PM Revision aafb7142 (cdm-vaadin): managing dependency org.json:json
Andreas Kohlbecker
01:33 PM Revision 204936fc (cdm-vaadin): adding dependency vaadin-spring-addon-eventbus
Andreas Kohlbecker
01:29 PM Revision 18a0f694 (cdm-vaadin): ref #6410 follow up to adding a new TaxonRelatioshipType comitted...
Andreas Kohlbecker
01:21 PM bug #6439 (Resolved): Add (Heft xxx) as part of volume to name parser
Applied in changeset commit:cdmlib|84c93d927faac985dab1ba3d8c550680cbaf840c. Andreas Müller
01:20 PM bug #6439 (Closed): Add (Heft xxx) as part of volume to name parser
Andreas Müller
01:20 PM Revision 84c93d92 (cdmlib): fix #6439 Add (Heft xxx) as part of volume to name parser
Andreas Müller
01:19 PM feature request #6438 (New): Distinguish bibliographic and nomenclatural search for references in...
Hallo,
bei folgendem Titel habe ich die Angaben zum Buch der Serie geändert, und zwar von „Engl., Pflanzenr. 4(3). 1...
Andreas Müller
12:32 PM Revision dbe39320 (cdm-dataportal): adapting new lines in test to modified interpretation in brow...
Andreas Kohlbecker
12:26 PM Revision 52fe46cc (cdm-dataportal): ref #6158 Update documentation from svn to git
- update links from trac to redmine
- update links to cybertaxonomy.eu
Patrick Plitzner
11:38 AM bug #6437 (Closed): Always update titleCache for nomenclatural reference
If the title of an inreference (e.g.) journal changes, the title cache of the according reference (e.g. article) usua... Andreas Müller
11:31 AM bug #6436 (New): [DISCUSS] TitleCache update strategy for related objects
Hallo Walter,
ja, das ist ein altes Problem (leider noch viel älter als Remoting). Da wir bei den Formattierern (C...
Andreas Müller
10:35 AM feature request #6435 (Duplicate): [DISCUSS] Comment field for "Protolog"
WGB: Mir aufgefallen, dass die Angabe „Protolog“ im Editor Detail eigentlich nicht richtig ist, es geht ja eigentlich... Andreas Müller
10:33 AM bug #6434 (Duplicate): Add URL for TypeDesignation
WGB: Ein Lektotype muss ja explizit designiert (publiziert!) werden – das ist dann m.A.n. die Referenz, die in der Ty... Andreas Müller
10:24 AM Revision b6f4fe20 (taxeditor): update classpath to 1.8
Andreas Müller
10:14 AM bug #6433: NPE in PartialElement
please review Andreas Müller
10:13 AM bug #6433 (Resolved): NPE in PartialElement
Applied in changeset commit:taxeditor|b01740817b1db8a3ac7b9a1b1292f6a19255a05f. Andreas Müller
10:10 AM bug #6433 (Closed): NPE in PartialElement
Ein “roter” Fehler, der aber übergangen wird – ich habe beim Monat zuerst f eingegeben, Fehler weggedrückt und dann 2... Andreas Müller
10:13 AM Revision b0174081 (taxeditor): fix #6433 fix NPE in PartialElement
Andreas Müller
10:12 AM Revision 8b45c387 (taxeditor): cleanup
Andreas Müller
08:33 AM bug #6099 (Closed): Duration of save is increasing
Hallo ,
ich habe gerade ein paar Test gemacht und da ging das Speichern für das im Ticket genannte Taxon ganz erhe...
Andreas Müller

02/26/2017

11:04 PM feature request #5554 (Resolved): Allow parsing of lat/long with different minute/second characters
Please review Andreas Müller
11:04 PM feature request #5554 (New): Allow parsing of lat/long with different minute/second characters
Andreas Müller
11:02 PM feature request #5554 (Resolved): Allow parsing of lat/long with different minute/second characters
Applied in changeset commit:cdmlib|8cfe0371df8e703dcdc3007579404891915e9d9c. Andreas Müller
11:02 PM Revision 8cfe0371 (cdmlib): fix #5554 lat/long parsing with single and double quotation mark and...
Andreas Müller
10:14 PM bug #6099 (Resolved): Duration of save is increasing
Hi Norbert,
could you please check if this is fixed or at least better now. Probably it was fixed in version 4.4. ...
Andreas Müller
10:04 PM Revision 6ecf5e6f (cdmlib): ref #6365 remove BotanicalName from IPNI service
Andreas Müller
10:02 PM Revision 59b17733 (cdmlib): cleanup
Andreas Müller
09:20 PM feature request #4137 (In Progress): Discuss "Material Sample" as new SpecimenOrObservationType
Andreas Müller
11:24 AM Revision e34ac8d3 (taxeditor): i18n files win compatible
Andreas Müller
11:11 AM Revision 530a12a5 (cdmlib): ref #6410 latest changes for eFlora (FM 15) import
Andreas Müller
11:05 AM Revision 133d0005 (cdmlib): cleanup
Andreas Müller
10:50 AM Revision 6c06606c (cdmlib): add transient method isHybridName (cont.)
Andreas Müller
10:50 AM Revision e39c28b0 (cdmlib): ref #6419 update remaining bean names for cdmRepository
Andreas Müller
10:50 AM Revision cb4b3b25 (cdmlib): ref #6410 handle hybridClass attribute
Andreas Müller
10:50 AM Revision 6efe4dfc (cdmlib): add transient method isHybridName
Andreas Müller
10:50 AM Revision f3668224 (cdmlib): ref #6419 update bean name in CdmApplicationController
Andreas Müller

02/25/2017

12:19 AM bug #6381 (Resolved): Specimen titleCache should include barcode or catalogue number if accession...
Applied in changeset commit:cdmlib|132a52ccb75238b72dd8a321bc572ec9911c6944. Andreas Müller
12:18 AM Revision 132a52cc (cdmlib): fix #6381 Also use barcode or catalogue number for titlecache if acce...
Andreas Müller

02/24/2017

04:07 PM bug #6432: Apply CSS only to non-admin pages
I also pushed my branch https://dev.e-taxonomy.eu/gitweb/cdm-dataportal.git/shortlog/refs/heads/6432_css_only_admin Saskia Gennrich
03:54 PM bug #6432: Apply CSS only to non-admin pages
So here's a patchfile you can apply to your local repository with
git apply -v 6432_css_only_admin.patch
Saskia Gennrich
03:49 PM bug #6432 (Closed): Apply CSS only to non-admin pages
Some of the rules in cdm_dataportal.css are too wide. Especially HTML Description list tags (dl, dd, dt) mess with my... Saskia Gennrich
03:50 PM Revision 42316889 (cdm-dataportal): ref #6432 apply css only to non-admin pages
Saskia Gennrich
03:22 PM bug #6430 (Closed): proxy_content not returning data
Für nginx muss fastcgi_pass oder proxy_pass korrekt eingestellt werden, damit URLs direkt an php-fpm weitergeleitet w... Saskia Gennrich
09:27 AM Revision 22b10d0b (taxeditor): ref #4611 Remove unused string constant
Patrick Plitzner

02/23/2017

04:49 PM Revision a86dbf9a (taxeditor): ref #4611 Restructure string externalization for taxeditor.store
- created l10n package and moved Messages.java and the
messages.properties files there
Patrick Plitzner
04:47 PM Revision 81202bbf (taxeditor): ref #4611 Fix l10n property path
Patrick Plitzner
04:45 PM Revision 6a5433c1 (taxeditor): ref #4611 Restructure string externalization for taxeditor.navigation
- created l10n package and moved Messages.java and the
messages.properties files there
Patrick Plitzner
04:42 PM Revision 3feda385 (taxeditor): ref #4611 Include properties files in binary build
Patrick Plitzner
04:42 PM Revision 313644ae (taxeditor): ref #4611 Restructure string externalization for taxeditor.molecular
- created l10n package and moved Messages.java and the
messages.properties files there
Patrick Plitzner
04:30 PM Revision 3e3975f3 (taxeditor): ref #4611 Restructure string externalization for taxeditor.bulkeditor
- created l10n package and moved Messages.java and the
messages.properties files there
Patrick Plitzner
02:41 PM Revision 61c51c84 (taxeditor): ref #4611 i18n for taxeditor.editor plugin
Patrick Plitzner
02:41 PM Revision 150b624d (taxeditor): ref #4611 complete i18n for taxeditor.editor plugin
- also created l10n package and moved Messages.java and teh
messages.properties files there
Patrick Plitzner
12:04 PM Revision 2a41b80d (taxeditor): externalize strings for admin menu
Katja Luther
10:48 AM Revision 8c44775b (cdmlib): provide the new IRightsService in service layer
Katja Luther
10:33 AM Revision a3140560 (taxeditor): add RightsService to CdmApplicationRemoteConfiguration
Katja Luther
10:33 AM Revision cf802bbf (taxeditor): fix excdel import from editor
Katja Luther
10:24 AM Revision 37180104 (cdmlib): fix excel import from editor
Katja Luther

02/22/2017

05:51 PM bug #6430 (Resolved): proxy_content not returning data
Es ist ein nginx Problem, weil der die url schon decoded bevor er sie an drupal weiter gibt. Saskia Gennrich
04:45 PM bug #6430: proxy_content not returning data
Nein, leider gibt es dazu noch keinen öffentlichen Server. Ich hab das sowohl auf meinem lokalen Rechner als auch auf... Saskia Gennrich
04:16 PM bug #6430 (Feedback): proxy_content not returning data
Auf dem test-portal verhalten sich die Breadcrumbs normal: http://test.e-taxonomy.eu/dataportal/preview/fauna-europae... Andreas Kohlbecker
04:02 PM bug #6430: proxy_content not returning data
Nach einem Update auf die aktuelle Version des Dataportals funktionieren die AJAX Anfragen in den Taxontree-Breadcrum... Saskia Gennrich
03:55 PM bug #6430 (Closed): proxy_content not returning data
Saskia Gennrich
04:19 PM bug #6431 (Closed): php INFO 'warnings' in fauna europeae taxon page
http://test.e-taxonomy.eu/dataportal/preview/fauna-europaea/cdm_dataportal/taxon/e5b22697-cf8f-49e8-aa90-82db69f4769d... Andreas Kohlbecker
12:52 PM Revision 3111b076 (taxeditor): ref #4611 i18n for molecular plugin (missing translation)
Patrick Plitzner
12:50 PM Revision ae0a9e7c (taxeditor): ref #6421 Add workaround to troubleshooting
Patrick Plitzner
12:50 PM Revision c4a7540a (taxeditor): ref #4611 i18n for molecular plugin
Patrick Plitzner
10:52 AM feature request #6429 (New): Reconstruct Admin Preferences
At the moment the Admin preferences are in a tab view. They should be in a tree view like the local preferences. Katja Luther

02/21/2017

04:48 PM Revision 8d33d5d6 (taxeditor): ref #4611 Add missing string, remove unused files
Patrick Plitzner
04:44 PM Revision ae137b34 (taxeditor): ref #4611 some l10n for taxeditor and taxeditor.editor plugin
Patrick Plitzner
12:25 PM Revision f1e283f5 (cdm-vaadin): renaming dbstatus to DistributionStatus
Andreas Kohlbecker
11:14 AM feature request #4137: Discuss "Material Sample" as new SpecimenOrObservationType
for algae and gbol II we need this to cover the environmental samples and mixed samples Katja Luther
10:41 AM feature request #6166: In ABCD import also import all siblings of a culture or tissue sample
Katja Luther wrote:
> actually we only get the associated units of an unit, but for a derivate of a culture or a tis...
Katja Luther
10:40 AM bug #5924 (Closed): Change password leads to bad credentials
Katja Luther
10:40 AM feature request #6076 (Resolved): Specimen search should work on observations
Katja Luther

02/20/2017

06:20 PM task #3603 (Resolved): Remove creation of dummy DefinedTerm when creating new Term related entities
Applied in changeset commit:taxeditor|9dfd3706bcc09730a3b64d6b12a264b587c52a2e. Patrick Plitzner
05:38 PM task #3603 (In Progress): Remove creation of dummy DefinedTerm when creating new Term related ent...
Reopened because although there are no errors dummy terms are still created Patrick Plitzner
05:36 PM task #3603 (Closed): Remove creation of dummy DefinedTerm when creating new Term related entities
I could not reproduce any error so I guess this is fixed. Patrick Plitzner
06:20 PM Revision 9dfd3706 (taxeditor): fix #3603 Avoid creation of dummy DefinedTerm
Patrick Plitzner

02/17/2017

08:26 PM bug #6100: Name parser problems
´t Hart still does not seem to work if compiled with maven. Should be avoided as it seems to be 2 characters (1 hidden) Andreas Müller
07:26 PM bug #6100 (In Progress): Name parser problems
Andreas Müller
07:26 PM bug #6100: Name parser problems
Issues from Name-parsing-problems.txt:
* most issues also about subgen., forma, C.I Peng, ´t Hart etc.
New iss...
Andreas Müller
06:35 PM bug #6100: Name parser problems
remaining issue from basionyms copied to new ticket: #6428 Andreas Müller
06:30 PM bug #6100: Name parser problems
Author issues (C.I, la Croix and ´t Hart) fixed with 78c828989914a .
Maybe we should automatically map ´t Hart to '...
Andreas Müller
06:00 PM bug #6100: Name parser problems
Andreas Müller wrote:
> Basionyms (cont.):
>
> Another problem is the use of forma instead of "f.". I haven't fou...
Wolf-Henning Kusber
05:58 PM bug #6100: Name parser problems
fixed subgen. and forma recognition by 7301dfbfa163b (even if maybe not code compliant) Andreas Müller
05:54 PM bug #6100: Name parser problems
't Hart is standard for ´t Hart
http://www.ipni.org/ipni/idAuthorSearch.do?id=10539-1&back_page=%2Fipni%2FeditAdvAut...
Wolf-Henning Kusber
05:45 PM bug #6100: Name parser problems
Basionyms (cont.):
Another problem is the use of forma instead of "f.". I haven't found in the code if abbreviatio...
Andreas Müller
05:23 PM bug #6100: Name parser problems
Basionyms (I):
Most cases refer to subgen. as infrageneric marker. According to Art. 5A.1. of the code subg. is th...
Andreas Müller
05:11 PM bug #6100: Name parser problems
Wolf-Henning Kusber wrote:
> Andreas Müller wrote:
> > Hybrids (2):
> >
> > * Swida x friedlanderi (W.H.Wagner ...
Wolf-Henning Kusber
04:49 PM bug #6100: Name parser problems
Andreas Müller wrote:
> Ex authors:
>
> * all the cases seem to follow the format Lycopersicon lycopersicoides A...
Wolf-Henning Kusber
04:48 PM bug #6100: Name parser problems
R.Br.ter => fixed with ce3ed240325c Andreas Müller
04:43 PM bug #6100: Name parser problems
Andreas Müller wrote:
> Hybrids (2):
>
> * Swida x friedlanderi (W.H.Wagner jun.) Holub => the problem here is...
Wolf-Henning Kusber
04:41 PM bug #6100: Name parser problems
Ex authors:
* all the cases seem to follow the format Lycopersicon lycopersicoides A.Child ex (Dunal) J.M.H.Shaw ...
Andreas Müller
04:37 PM bug #6100: Name parser problems
Hybrids (2):
* Swida x friedlanderi (W.H.Wagner jun.) Holub => the problem here is "jun." in the author
fix...
Andreas Müller
04:34 PM bug #6100: Name parser problems
Andreas Müller wrote:
> Hybrids:
> * Pterocypsela x mansuensis (Hayata) C.I Peng => the problem here is the missi...
Wolf-Henning Kusber
04:26 PM bug #6100: Name parser problems
Hybrids:
* Pterocypsela x mansuensis (Hayata) C.I Peng => the problem here is the missing dot after "C.I" ! Is t...
Andreas Müller
08:24 PM Revision 18ae79e1 (cdmlib): ref #6100 comment open issues with accent acute
Andreas Müller
08:11 PM task #6158 (Resolved): Update EDIT documentation from svn to git
Andreas Müller
08:09 PM Revision e838ffcc (cdmlib): ref #6100 fix Sant'Anna parsing
Andreas Müller
08:01 PM Revision 454d0d3d (cdmlib): ref #6100 fix Man in 't Veld and De la Torre (maybe fixed already bef...
Andreas Müller
07:59 PM Revision 35475a8f (cdmlib): cleanup
Andreas Müller
06:33 PM feature request #6428 (New): Handle fungi authors in name parser (and model)
see https://dev.e-taxonomy.eu/redmine/issues/6100?#note-13 for examples Andreas Müller
06:28 PM Revision 78c82898 (cdmlib): ref #6100 fix author issues for la Croix, ´t Hart and C.I
Andreas Müller
05:58 PM Revision 7301dfbf (cdmlib): ref #6100 fix parser subgen. and forma
Andreas Müller
04:47 PM Revision ce3ed240 (cdmlib): ref #6100 fix parser for bis and ter in author string
Andreas Müller
04:35 PM Revision 4c91a094 (cdmlib): ref #6100 fix parser for jun. in author string
Andreas Müller
04:30 PM Revision 37373dbd (taxeditor): Extend troubleshooting site
- added problem is user home is on a network drive Patrick Plitzner
04:12 PM feature request #5983 (Resolved): Better parsing of hybrid names
Please review if all relevant cases are covered by the new parser. Andreas Müller
11:19 AM feature request #5983 (In Progress): Better parsing of hybrid names
Andreas Müller
04:09 PM Revision a96a9d32 (cdmlib): ref #5983 and ref #6410 parsing of hybrid formulas with missing name...
Andreas Müller
03:06 PM Revision a47c6104 (cdmlib): ref #6158 Update documentation from svn to git (cdmlib-print)
- update links from trac to redmine
- update links to cybertaxonomy.eu
Patrick Plitzner
02:49 PM Revision 6059a315 (cdm-server): ref #6158 Update documentation from svn to git
- update links from trac to redmine
- update links to cybertaxonomy.eu
Patrick Plitzner
02:34 PM Revision da0280bf (cdm-dataportal): ref #6158 Update documentation from svn to git
- update links from trac to redmine
- update links to cybertaxonomy.eu
Patrick Plitzner
02:01 PM Revision 0dab2caa (cdmlib): ref #6158 Update documentation fro svn to git
- update links from trac to redmine
- update links to cybertaxonomy.eu
- increase maven-site-plugin version to 3.3
Patrick Plitzner
01:59 PM Revision 5065f99f (taxeditor): ref #6158 Update documentation from svn to git
- update links from trac to redmine
- update links to cybertaxonomy.eu
- increase maven-site-plugin version to 3.3
Patrick Plitzner
12:51 PM feature request #6315 (Resolved): Implement setSecundumForSubtree in TaxEditor
Applied in changeset commit:taxeditor|d898479a7e96e9b83ca7042327ab076846fe143c. Katja Luther
12:51 PM Revision d898479a (taxeditor): fix #6315: adapt the setSecundum for subtree functionality in editor
Katja Luther
10:57 AM bug #6262 (Resolved): Implement Rights reusable in TaxEditor
Applied in changeset commit:taxeditor|8dbcbc43e5cc155eea9d70af88fc937325fb1927. Katja Luther
10:57 AM Revision 8dbcbc43 (taxeditor): fix #6262: add possibility to reuse rights in editor
Katja Luther
10:57 AM Revision 61b8e368 (taxeditor): ref #5691: move description setting to an own thread in referencin...
Katja Luther
10:53 AM Revision 7e4c5c5b (cdmlib): ref #6262: adding funtionality to library to access rights for select...
Katja Luther
10:51 AM Revision 3027adc5 (cdmlib-apps): ref #6410 adapt NepenthaceaeActivator
Andreas Müller
10:50 AM Revision 8072bd02 (cdmlib-apps): ref #6419 adapt to CdmRepository in cdmlib-app
Andreas Müller
10:45 AM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
moved the setting of the description to its own thread to avoid the "Invalid thread access" exception. And clear righ... Katja Luther
10:39 AM Revision a9aabce2 (cdmlib): ref #6406 revert MarkupTransformer temporarily to allow compilation
Andreas Müller
10:29 AM Revision 480e8ef4 (cdmlib): ref #6410 fix markup compile issues
Andreas Müller
10:29 AM Revision a3e316c8 (cdmlib): ref #6419 some remaining CdmRepository issues
Andreas Müller
10:19 AM Revision 1b105214 (cdmlib): ref #6427 javadoc
Andreas Müller
10:16 AM bug #6427 (New): Improve Matching for Reference.title and abbrevTitle
Currently we have EQUAL_REQUIRED on title which is to strict as also an abbrevTitle is sufficient.
We need a rule ...
Andreas Müller
10:09 AM Revision 7e5b7051 (cdmlib): ref #6410 Latest changes to Markup import
Andreas Müller

02/16/2017

12:20 AM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
Andreas Müller wrote:
> A last issue: if possible it would be more intuitive if the label textfields could be placed...
Andreas Müller
12:09 AM feature request #5474 (Feedback): TermEditor menu should be more structured
Separator works now.
i18n for "others" still does not work.
Andreas Müller
12:02 AM feature request #5671 (Feedback): Name selection should not allow self referencing name relations...
Andreas Müller
12:01 AM feature request #5671: Name selection should not allow self referencing name relationships
Seems to be solved for name relationships but still open for taxon relationships.
Also for inreferences we need to...
Andreas Müller
11:59 PM bug #6426 (New): Avoid stack overflow in self referencing references
happens in cache strategy:
~~~
login : admin
editor version : 4.6.0.201702161652
server : test.e-taxonomy.eu (e...
Andreas Müller
11:44 PM feature request #5714 (Closed): In Original Source Type dropdown show Primary Taxonomic Source first
Seems to be correct now Andreas Müller
11:39 PM bug #5924: Change password leads to bad credentials
Seems to work Andreas Müller
11:31 PM task #1606 (Feedback): Restrict filtered selection of in references to the respective reference t...
Andreas Müller
11:26 PM task #1606: Restrict filtered selection of in references to the respective reference types
When trying to select a reference for an article with "?" I got the following exception:
~~~
login : admin
edito...
Andreas Müller
11:04 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
The above exceptions appears often though not 100% reproducable.
Also when a new object is selected the dialog do...
Andreas Müller
10:58 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
when canceling the job it looks like it sometimes still shows the old records (for an old selection) this may be misl... Andreas Müller
10:48 PM bug #5691 (Feedback): Referencing objects view makes editor inresponsive if an object references ...
I got an "Invalid thread access" exception when testing it for reference "The International Plant Names Index (2012).... Andreas Müller
10:41 PM feature request #922 (Closed): Implement compareTo method in IdentifiableEntity properly
Moved the tests down to the subclasses Andreas Müller
10:35 PM Revision c47e320c (cdmlib): cleanup
Andreas Müller
10:35 PM Revision 8c57ca35 (cdmlib): new factory methods for sources
Andreas Müller
10:35 PM Revision 9bd28371 (cdmlib): cleanup
Andreas Müller
10:35 PM Revision f8b4b762 (cdmlib): Cleanup
Andreas Müller
10:35 PM Revision b5b4a36c (cdmlib): ref #922 move compareTo test to subclasses
Andreas Müller
09:33 PM bug #6304 (Closed): Deleting of Person used as user does not work
Andreas Müller
09:27 PM feature request #6308 (Feedback): Add configuration dialog for the deletion of synonyms in name e...
Andreas Müller
09:26 PM feature request #6308: Add configuration dialog for the deletion of synonyms in name editor
Generally works, but if name could not be deleted (because in use) 2 warning appear, first is about synonym delete, s... Andreas Müller
09:09 PM bug #6425 (New): Problems with synonyms in taxon navigator comparator
When having natural ordering switched on and navigator synonyms (experimentell feature in Customize View -> Content) ... Andreas Müller
09:01 PM bug #6424 (Closed): Empty name creates problem/NPE in name editor
When pressing return on the end of the synonymy list a new empty record appears. When trying to save it is labeled "C... Andreas Müller
08:55 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
Generally the functionality seems to work well. Andreas Müller
08:54 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
The progressbar does not seem to work. Is this because it is not yet correctly implemented in the underlying cdmlib m... Andreas Müller
08:53 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
Trying to create a new Reference in the reference selection box throws an NPE when clicking on ok:
~~~
login : ad...
Andreas Müller
08:52 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
* If neither accepted taxa nor synonyms are checkedthe OK button should be disabled
* "mehrfach verwendete" taxa s...
Andreas Müller
08:35 PM feature request #6315 (Feedback): Implement setSecundumForSubtree in TaxEditor
Some layout and labeling issues:
* The New secundum reference label is not translated
* "anwenden auf akzeptier...
Andreas Müller
08:18 PM bug #6376 (Closed): NPE when deduplicating agent
Difficult to test as there is no description how to reproduce. Anyway I tested some deduplications and it works. Also... Andreas Müller
04:51 PM Revision aaf58910 (taxeditor): ref #6347 fix typo and add label
Patrick Plitzner
08:31 AM bug #6262: Implement Rights reusable in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > for reusability of rights we need a service to get the text and the...
Katja Luther

02/15/2017

05:26 PM bug #5639: NPE when showing name relationships for a name originally related to a deleted name
Katja Luther wrote:
> I could reproduce it with following settings:
>
> name1 has nameRelation to name2 and name2...
Andreas Müller
02:10 PM bug #5639: NPE when showing name relationships for a name originally related to a deleted name
I could reproduce it with following settings:
name1 has nameRelation to name2 and name2 has another nameRelation t...
Katja Luther
05:13 PM bug #6262: Implement Rights reusable in TaxEditor
Katja Luther wrote:
> for reusability of rights we need a service to get the text and the uuid of the rights, maybe ...
Andreas Müller
03:16 PM bug #6262 (In Progress): Implement Rights reusable in TaxEditor
for reusability of rights we need a service to get the text and the uuid of the rights, maybe it would be nice to hav... Katja Luther
03:19 PM Revision bce90273 (cdmlib): ref #6262: create dao and service for rights
Katja Luther
02:10 PM feature request #5839 (Duplicate): Improve error message when server can't be reached
Katja Luther
01:19 PM bug #6423 (New): searching for synonyms and taxa in advanced search does not return all synonyms
Hallo,
mir scheint, die advanced name search sammelt Synonyme, wenn die entsprechende Option angehakt ist, nur seh...
Katja Luther
12:48 PM Revision 994548e2 (taxeditor): merge
Katja Luther
11:25 AM Revision 30846ae3 (taxeditor): ref #5691: minor
Katja Luther
11:25 AM Revision 48621fdd (taxeditor): fix deletion of new created entities in bulk editor
Katja Luther
10:48 AM Revision 2da9ade2 (taxeditor): ref #6419 renaming CdmApplicationDefaultConfiguration to CdmReposi...
Andreas Kohlbecker
10:30 AM Revision 7f6cc57e (cdmlib): ref #6214: add the PreferencePredicates for the project specific pref...
Katja Luther
09:59 AM task #6421: Document workaround for user.home location problem in Windows
Andreas Kohlbecker wrote:
> Hi Patrick, would you volunteer to care for this?
Yes. I still have an open documenta...
Patrick Plitzner
09:16 AM task #6421: Document workaround for user.home location problem in Windows
Hi Patrick, would you volunteer to care for this? Andreas Kohlbecker
09:05 AM task #6421 (Closed): Document workaround for user.home location problem in Windows
see #5848#note-9 for details Andreas Kohlbecker
09:55 AM Revision f380627e (cdm-vaadin): ref #6419 renaming CdmApplicationDefaultConfiguration to CdmRepos...
Andreas Kohlbecker
09:55 AM Revision 41356809 (cdmlib): ref #6419 renaming ICdmApplicationDefaultConfiguration to ICdmRepository
Andreas Kohlbecker
09:35 AM Revision a735bbbf (cdm-vaadin): ref #5285 attempt to avoid using the CdmSpringContextHelper
using DI to get rid of CdmSpringContextHelper, but got stuck due to the complexity and variety of the 'design pattern... Andreas Kohlbecker
09:14 AM feature request #5848: Problem with writing ehCache folder on network drive using UNC path (net.s...
Thank you Ben for this analysis.
I fully agree, we cant do much about this exept providing good documentation for ...
Andreas Kohlbecker
09:13 AM bug #6422 (New): 'Specified key was too long' on creating a new database
issue copied from #5848
Originally reported by Ben Stöver. Had problems when creating a new database from within t...
Andreas Kohlbecker

02/14/2017

01:58 PM feature request #5848: Problem with writing ehCache folder on network drive using UNC path (net.s...
I tested it again and it now uses "C:\Users\bstoe_01" as the user profile path. This is a local copy of the profile w... Ben Stöver
12:56 PM feature request #5848 (Feedback): Problem with writing ehCache folder on network drive using UNC ...
This issue seems to be related to a java bug which existed in java versions pre jdk 1.8: https://duckduckgo.com/?q=Sy... Andreas Kohlbecker
12:29 PM feature request #5848: Problem with writing ehCache folder on network drive using UNC path (net.s...
Patrick merged the current code into my branch and I tested it. I currently always run the EDITor with the option "-D... Ben Stöver
10:44 AM bug #6418 (In Progress): Status line does not update after completing the update of the referenci...
the message which keeps staying in the status line is the title of one of the first jobs. The job is finsihed and the... Katja Luther
08:17 AM bug #6418 (Worksforme): Status line does not update after completing the update of the referencin...
After finishing the update of the referencing objects view the status line still shows "Updating referencing objects ... Katja Luther
10:01 AM task #6419 (Closed): CdmApplicationDefaultConfiguration should be named CdmRepository
Andreas Kohlbecker
10:01 AM task #6419 (Resolved): CdmApplicationDefaultConfiguration should be named CdmRepository
Applied in changeset commit:cdmlib|be652f06b6a64c10433a94b46f88c6458145395f. Andreas Kohlbecker
08:59 AM task #6419 (In Progress): CdmApplicationDefaultConfiguration should be named CdmRepository
Andreas Kohlbecker
08:47 AM task #6419 (Closed): CdmApplicationDefaultConfiguration should be named CdmRepository
Andreas Kohlbecker
10:01 AM Revision be652f06 (cdmlib): fix #6419 renaming CdmApplicationDefaultConfiguration to CdmRepository
Andreas Kohlbecker
09:59 AM Revision 045ee12a (cdmlib): ref #3320 renaming CdmApplicationDefaultConfiguration to CdmRepository
Andreas Kohlbecker
08:49 AM task #6420 (New): Autowire CdmApplicationDefaultConfiguration instead of subclasses of ICdmServ ice
All classes autowiring any service class should rather be autowiring CdmApplicationDefaultConfiguration wheras the in... Andreas Kohlbecker
08:15 AM bug #5691 (Resolved): Referencing objects view makes editor inresponsive if an object references ...
The problem of unresponsible editor is solved but the status line keeps the message "Updating referencing objects vie... Katja Luther

02/13/2017

11:05 PM task #6417 (New): [DISCUSS] Need and properties of a NomenclaturalReference class
Pure nomenclatural references do have some specific properties only they have.
* very often articles and book sec...
Andreas Müller
03:52 PM feature request #6315 (Resolved): Implement setSecundumForSubtree in TaxEditor
implemented the menu item for the navigator. At the moment it is possible to remove the sec reference of the subtree ... Katja Luther
03:49 PM Revision 01506970 (taxeditor): minor
Katja Luther
03:33 PM Revision 61a85864 (taxeditor): code cleaning
Katja Luther
03:33 PM Revision 051bdc14 (taxeditor): improve delete handling in polytomous key node editor
Katja Luther
01:10 PM feature request #6416 (New): change sortindex of keynodes
sometimes it is needed that the alternatives of a polytomous key node are sorted in a different way. Therefore we nee... Katja Luther
12:04 PM bug #2495: IpniServiceTest fails from time to time
I applied this fix because I was blocked by the IPNI Service not being available for quite some time. The cdmlib coul... Andreas Kohlbecker
10:26 AM bug #2495: IpniServiceTest fails from time to time
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Andreas Kohlbecker wrote:
> This is a good suggestion. Howev...
Andreas Müller
10:24 AM bug #2495 (Feedback): IpniServiceTest fails from time to time
Andreas Müller
08:21 AM bug #2495 (Closed): IpniServiceTest fails from time to time
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > fixed by commit:9a211f9
> >
> > this is actually very quic...
Andreas Kohlbecker
11:02 AM Revision d5020a07 (cdmlib): ref #2495 Revert "prevent ipni tests from failing when external serve...
This reverts commit 9a211f95133eddfd9fe49a25bbd22ca4a5b841c5. Andreas Kohlbecker
10:52 AM Revision fdba7267 (cdmlib): minor documentation improvement
Andreas Kohlbecker
10:42 AM Revision a1dac6b2 (cdm-vaadin): #5285 removing problematic multi VaadinServlet configuration
Andreas Kohlbecker
10:29 AM bug #6415 (New): Create test suite for availability testing of external services
Availability of external services needs to be tested outside cdmlib standard maven testing to avoid failing tests in ... Andreas Müller
08:33 AM Revision 69d8e66b (cdm-server): follow up on package change in cdmlib
Andreas Kohlbecker

02/10/2017

09:34 PM bug #2495 (Feedback): IpniServiceTest fails from time to time
Andreas Kohlbecker wrote:
> fixed by commit:9a211f9
>
> this is actually very quick and easy to achieve:
>
> T...
Andreas Müller
05:27 PM bug #2495 (Closed): IpniServiceTest fails from time to time
fixed by commit:9a211f9
this is actually very quick and easy to achieve:
~~~java
@Before
public void setUp(...
Andreas Kohlbecker
05:17 PM Revision 9a211f95 (cdmlib): prevent ipni tests from failing when external server is absent
Andreas Kohlbecker
05:11 PM Revision 56695721 (taxeditor): adapted MANIFEST.MF
Katja Luther
04:59 PM Revision b5d2e0e3 (taxeditor): minor
Katja Luther
04:51 PM Revision aafb899a (cdm-vaadin): documentation
Andreas Kohlbecker
04:49 PM Revision f7765feb (taxeditor): minor
Katja Luther
04:47 PM Revision 09a4be52 (cdm-webapp): ide launcher added
Andreas Kohlbecker
04:44 PM Revision e6b01164 (cdm-vaadin): ref
Andreas Kohlbecker
04:42 PM Revision f5fc15f9 (cdmlib): disabling lojǵ4j debugging in ide launcher
Andreas Kohlbecker
04:42 PM Revision ad9b6d23 (cdmlib): ref #5285 addon structure for cdmlib-remote extensions like cdm-vaadi...
Andreas Kohlbecker
04:42 PM Revision 144ad436 (cdmlib): file formatting reg. line breaks and a README
Andreas Kohlbecker
03:18 PM Revision 57aa2fdb (taxeditor): ref #6315: implement set secundum reference for subtree in editor
Katja Luther
03:03 PM Revision a59e10db (cdmlib): ref #6315: minor changes for the implementing setSecundum for subtree...
Katja Luther
02:26 PM Revision d3a736ec (cdm-webapp): disabling lojǵ4j debugging in ide launcher
Andreas Kohlbecker
02:03 PM bug #6414 (New): use short name for excluded, unplaced taxa when the genus of the parent taxa is ...
This is handled in `cdm_dataportal.module#cdm_dataportal_shortname_of()`
However, we should consider solving this ...
Andreas Kohlbecker
11:36 AM Revision 3e6e1b76 (cdmlib): ref #6410 latest changes to Markup import to match Nepenthaceae import
Andreas Müller
11:36 AM Revision 96afcf2f (cdmlib): cleanup
Andreas Müller
10:28 AM Revision 2070f523 (cdmlib): managin maven-antrun-plugin and adding lifecycle maapping file for ec...
Andreas Kohlbecker
10:23 AM Revision 013de4f5 (cdm-webapp): adding eclipse launcher config
Andreas Kohlbecker

02/09/2017

04:38 PM Revision fd9cf932 (cdm-vaadin): ref #5285 SpringUI configuration working
- @SpringUI added and configured
- theme harmonization as has as possible without causing glitches
- updating to ...
Andreas Kohlbecker
02:33 PM Revision 2ebeb1a9 (taxeditor): ref #4232 refactoring for comparator
Patrick Plitzner
02:29 PM Revision df366db5 (taxeditor): ref #4232: some more comparators to adapt
Katja Luther
01:37 PM Revision bdcfdeab (taxeditor): ref #4232: adapt comparator of filteredSelection dialogs to fulfil...
Katja Luther
01:31 PM Revision fc758deb (taxeditor): ref #4232: adapt comparator to comaparator contract
Katja Luther
01:09 PM Revision 7229f9d4 (cdmlib): ref #4232: made some changes to fullfill the comparator contract
Katja Luther
12:30 PM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
My preferred solution: an option (with similar functionality as the "add new specimen" option for a field unit in the... Norbert Kilian
11:45 AM bug #6299: Error when deleting reference in bulk editor
Patrick Plitzner wrote:
> I don't know how to reproduce this. Does this also happen in local workspace environment?
...
Katja Luther
11:39 AM bug #6299 (Feedback): Error when deleting reference in bulk editor
I don't know how to reproduce this. Does this also happen in local workspace environment? Patrick Plitzner

02/08/2017

08:09 PM feature request #5474 (Resolved): TermEditor menu should be more structured
Andreas Müller
05:25 PM feature request #5474: TermEditor menu should be more structured
Added a separator. Implemented use of i10n but could not check if it works Patrick Plitzner
05:23 PM Revision 9d215095 (taxeditor): ref #5474 Add separator and i10n to Term menu
Patrick Plitzner
05:12 PM feature request #6413 (Closed): [DISCUSS] How to create type duplicates (e.g. isotypes) for a tax...
Coming from the name editor it is currently only possible to add a new type designation in order to create a type spe... Patrick Plitzner
03:34 PM Revision dda1d525 (taxeditor): ref #5691: fix the problem that ref. objects view does not has its...
Katja Luther
03:31 PM bug #6281 (In Progress): delete synonym with annotations throws exception
reverted the orphan-delete removal and try to reproduce when the problem appears. In a cdmlib test everything works f... Katja Luther
11:22 AM bug #6281: delete synonym with annotations throws exception
after some more research it seems to be a problem of orphanRemoval=true.
I removed the orphan-removal annotation ...
Katja Luther
11:15 AM bug #6281 (Resolved): delete synonym with annotations throws exception
Applied in changeset commit:cdmlib|20cfb7a6d5e466a0d9444be958537e3db2a8732d. Katja Luther
02:13 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
Fixed order of "Other" and "Unknown" Patrick Plitzner
02:11 PM Revision 46360ec1 (taxeditor): ref #5714 The last two terms are always "Other" followed by "Unknown"
Patrick Plitzner
01:34 PM Revision 029f979a (cdm-vaadin): ref #5285 replacing VaadinServlet by SpringVaadinServlet
Andreas Kohlbecker
01:31 PM Revision bdaf82ec (cdm-vaadin): deprecating unused class
Andreas Kohlbecker
12:04 PM bug #6412 (New): Improve display of gathering event in specimen default view
There are multiple issues:
* If no collecting areas exist the label is still shown together with the following att...
Andreas Müller
11:59 AM Revision b162c633 (taxeditor): changes in misapplicationDeletionOperation
Katja Luther
11:52 AM Revision ba775160 (taxeditor): missing Messages changes
Katja Luther
11:15 AM Revision 20cfb7a6 (cdmlib): fix #6281: remove orphan removal for collections
Katja Luther
11:12 AM feature request #6308 (Resolved): Add configuration dialog for the deletion of synonyms in name e...
Applied in changeset commit:taxeditor|2bffeed29e530122d2885344f716cda61a9cc825. Katja Luther
11:12 AM Revision 2bffeed2 (taxeditor): fix #6308: add delete configuration dialog for synonyms and misapp...
Katja Luther
11:07 AM Revision 0fd8512c (cdm-vaadin): cleaning up a bit
- removing unnesscary main log4j.properties
- suppressing HHH90000003 deprication warning
- removing commented be...
Andreas Kohlbecker
10:58 AM Revision fb70a9a7 (cdm-vaadin): ref #5285 adding vaadin-spring to the pom.xml
Andreas Kohlbecker
08:49 AM task #5285 (In Progress): Use Vaadin Spring Add-on
Andreas Kohlbecker

02/07/2017

05:22 PM bug #6388 (Closed): Duplicate entry exception when adding types to a taxon
works fine Patrick Plitzner
05:19 PM bug #6300 (Closed): DataIntegrityViolationException when saving a type
creating a new type specimen with only a protected title cache and saving it works fine Patrick Plitzner
05:16 PM bug #6336 (Closed): NPE when deleting recently created media
works fine Patrick Plitzner
05:12 PM bug #6372 (Closed): NPE when using ShowView - Datasource
Works fine!
Tested it with a corrupted datasources file
Patrick Plitzner
04:21 PM bug #2939 (Closed): ehcache diskStore conflict?
Andreas Kohlbecker
03:51 PM Revision d8cef48f (taxeditor): re-enabling eu.etaxonomy.taxeditor.test in pom
Andreas Kohlbecker
03:49 PM Revision 59b24aa6 (taxeditor): fixing bundle and tycho plugin config
Andreas Kohlbecker
03:35 PM Revision 0d5c6b4c (taxeditor): Use titleCache for FieldUnits in specimen editor
Patrick Plitzner
03:32 PM Revision a89bf067 (taxeditor): revert adding test into parent pom
Katja Luther
02:20 PM Revision f15bc4f3 (taxeditor): Revert "removing all .classpath and .project files"
This reverts commit c02ad176b4c6452b302560e254f319b7260cd6d8. Andreas Kohlbecker
02:20 PM Revision b3b43c24 (taxeditor): Revert "Add .project files"
This reverts commit 7b5184094bda79a0c13e879907eaaafe3b7561b2. Andreas Kohlbecker
02:15 PM Revision b528c871 (taxeditor): adding lifecycle-mapping-metadata.xml to avoid m2e build plugin pr...
Andreas Kohlbecker
02:15 PM Revision 2555ef70 (taxeditor): adding bin folders to gitignore
Andreas Kohlbecker
12:05 PM Revision 7b518409 (taxeditor): Add .project files
- revert of c02ad176b4c6452b302560e254f319b7260cd6d8 Patrick Plitzner
11:48 AM bug #6311 (Rejected): Refactor IdentifiableEntity.compareTo method
Close the ticket as we moved the methods to TaxonNameBase and TaxonBase and the compareToX methods do not implement t... Katja Luther
11:30 AM feature request #922 (Feedback): Implement compareTo method in IdentifiableEntity properly
Looks fine, the only thing that should be moved, are the tests for the new methods. At the moment the methods are sti... Katja Luther
09:47 AM Revision 3298d416 (taxeditor): ref #6401 Remove maxPermSize argument (not supported anymore in jd...
Patrick Plitzner
09:47 AM Revision 199029a4 (taxeditor): Add missing dependencies to feature.platform
- This allows to start the Taxeditor directly in a fresh workspace.
Otherwise you would have to edit the launch confi...
Patrick Plitzner
08:45 AM bug #6411 (Rejected): instructions on installing the nebula widget as missing
Yes this is solved. Andreas Kohlbecker

02/06/2017

06:36 PM bug #6411: instructions on installing the nebula widget as missing
This is solved by setting the target platform, right? Should we close this as invalid? Patrick Plitzner
03:12 PM bug #6411 (Rejected): instructions on installing the nebula widget as missing
Instructions on installing the nebula widget is missing in the taxeditor site documentation
1. go to help->
1. ad...
Andreas Kohlbecker
06:03 PM Revision 2339128f (cdmlib): ref #2939 option to set the CacheManager directly, needed for the tax...
Andreas Kohlbecker
06:01 PM Revision c02ad176 (taxeditor): removing all .classpath and .project files
Andreas Kohlbecker
06:01 PM Revision e4e551bd (taxeditor): adding script for easier project setup
Andreas Kohlbecker
06:01 PM Revision d0cd97fc (taxeditor): adding eu.etaxonomy.taxeditor.test as subproject
Andreas Kohlbecker
06:01 PM Revision dd7cf69d (taxeditor): ignoring .classpath files
Andreas Kohlbecker
06:01 PM Revision 506d9934 (taxeditor): fix #2939 removing EhCacheConfig from application contexts and con...
Andreas Kohlbecker
06:00 PM Revision 0ec8f6d7 (taxeditor): fix #2939 explicitely adding CdmServiceCache to test applicationCo...
Andreas Kohlbecker
05:59 PM Revision 4d92688f (taxeditor): fix #2939 removing EhCacheConfig from application contexts and con...
Andreas Kohlbecker
04:58 PM task #6401 (Closed): Update working environment to jdk 1.8
Andreas Müller
02:55 PM Revision 4c75c819 (taxeditor): ignoring .classpath files
Andreas Kohlbecker
02:24 PM Revision f116a500 (taxeditor): adding script for easier project setup
Andreas Kohlbecker
02:13 PM Revision d317abff (taxeditor): removing all .classpath and .project files
Andreas Kohlbecker
02:12 PM Revision 5913fb47 (taxeditor): adding eu.etaxonomy.taxeditor.test as subproject
Andreas Kohlbecker
01:05 PM Revision c57e7cd5 (taxeditor): fix #2939 explicitely adding CdmServiceCache to test applicationCo...
Andreas Kohlbecker
10:09 AM Revision 7cdc874a (cdmlib): changes in specimen import
Katja Luther
09:47 AM Revision f12ac52e (taxeditor): some changes for specimen import
Katja Luther
08:28 AM Revision 7e9bb88a (cdmlib): ref #2939 property to set the cacheManager diskstore
Andreas Kohlbecker
08:26 AM Revision 68fdcde3 (taxeditor): fix #2939 set up of cacheManager in test applicationContext
Andreas Kohlbecker
 

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