bug #6376: NPE when deduplicating agent - EDIT - EDIT Project Management

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bug #6376

closed

NPE when deduplicating agent

Added by Andreas Müller over 6 years ago. Updated over 6 years ago.

Status:

Closed

Priority:

Highest

Assignee:

Katja Luther

Category:

taxeditor

Target version:

Release 4.6

Start date:

Due date:

% Done:

100%

Estimated time:

Severity:

normal

Found in Version:

Release 4.5

Description

Hi,

folgende Fehlermeldung kam eben beim Deduplizieren.

schöne Grüße, Nadja

login : n.korotkova
editor version : 4.5.0
server : api.cybertaxonomy.org (cybertaxonomy.org) / caryophyllales_spp
schema version : 4.1.0.0.201607300000
os : Windows 7 6.1 amd64
java : 1.8.0_20
java.lang.NullPointerException
                at eu.etaxonomy.cdm.api.service.AgentServiceImpl.delete(AgentServiceImpl.java:145)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
                at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy1574.delete(Unknown Source)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy1891.delete(Unknown Source)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
                at org.springframework.remoting.support.DefaultRemoteInvocationExecutor.invoke(DefaultRemoteInvocationExecutor.java:39)
                at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
                at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
                at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:74)
                at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
                at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
                at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
                at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
                at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:871)
                at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
                at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
                at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
                at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:808)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316)
                at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
                at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:213)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
                at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
                at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
                at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
                at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
                at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585)
                at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
                at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577)
                at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223)
                at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127)
                at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515)
                at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
                at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061)
                at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
                at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215)
                at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97)
                at org.eclipse.jetty.server.Server.handle(Server.java:497)
                at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:310)
                at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
                at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540)
                at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
                at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
                at java.lang.Thread.run(Thread.java:745)
                at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
                at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
                at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
                at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:150)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy76.delete(Unknown Source)
                at eu.etaxonomy.taxeditor.bulkeditor.input.AgentEditorInput.delete(AgentEditorInput.java:160)
                at eu.etaxonomy.taxeditor.bulkeditor.input.AgentEditorInput.delete(AgentEditorInput.java:1)
                at eu.etaxonomy.taxeditor.annotatedlineeditor.AnnotatedLineDocumentProvider.doSaveDocument(AnnotatedLineDocumentProvider.java:280)
                at org.eclipse.ui.texteditor.AbstractDocumentProvider$1$SaveOperation.execute(AbstractDocumentProvider.java:610)
                at org.eclipse.ui.texteditor.AbstractDocumentProvider$DocumentProviderOperation.run(AbstractDocumentProvider.java:74)
                at org.eclipse.ui.texteditor.AbstractDocumentProvider.executeOperation(AbstractDocumentProvider.java:553)
                at org.eclipse.ui.texteditor.AbstractDocumentProvider.saveDocument(AbstractDocumentProvider.java:629)
                at org.eclipse.ui.texteditor.AbstractTextEditor.performSave(AbstractTextEditor.java:5048)
                at org.eclipse.ui.texteditor.AbstractTextEditor.doSave(AbstractTextEditor.java:4837)
                at eu.etaxonomy.taxeditor.annotatedlineeditor.AnnotatedLineEditor.doSave(AnnotatedLineEditor.java:250)
                at eu.etaxonomy.taxeditor.bulkeditor.BulkEditor.doSave(BulkEditor.java:263)
                at org.eclipse.ui.texteditor.AbstractTextEditor$TextEditorSavable.doSave(AbstractTextEditor.java:7177)
                at org.eclipse.ui.Saveable.doSave(Saveable.java:214)
                at org.eclipse.ui.internal.SaveableHelper.doSaveModel(SaveableHelper.java:349)
                at org.eclipse.ui.internal.SaveableHelper$3.run(SaveableHelper.java:195)
                at org.eclipse.ui.internal.SaveableHelper$5.run(SaveableHelper.java:277)
                at org.eclipse.jface.operation.ModalContext.runInCurrentThread(ModalContext.java:464)
                at org.eclipse.jface.operation.ModalContext.run(ModalContext.java:372)
                at org.eclipse.jface.window.ApplicationWindow$1.run(ApplicationWindow.java:759)
                at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:70)
                at org.eclipse.jface.window.ApplicationWindow.run(ApplicationWindow.java:756)
                at org.eclipse.ui.internal.WorkbenchWindow.run(WorkbenchWindow.java:2649)
                at org.eclipse.ui.internal.SaveableHelper.runProgressMonitorOperation(SaveableHelper.java:285)
                at org.eclipse.ui.internal.SaveableHelper.runProgressMonitorOperation(SaveableHelper.java:264)
                at org.eclipse.ui.internal.SaveableHelper.saveModels(SaveableHelper.java:207)
                at org.eclipse.ui.internal.SaveableHelper.savePart(SaveableHelper.java:144)
                at org.eclipse.ui.internal.EditorManager.savePart(EditorManager.java:1399)
                at org.eclipse.ui.internal.WorkbenchPage.savePart(WorkbenchPage.java:3416)
                at org.eclipse.ui.internal.WorkbenchPage.saveEditor(WorkbenchPage.java:3429)
                at org.eclipse.ui.internal.handlers.SaveHandler.execute(SaveHandler.java:54)
                at org.eclipse.ui.internal.handlers.HandlerProxy.execute(HandlerProxy.java:293)
                at org.eclipse.core.commands.Command.executeWithChecks(Command.java:476)
                at org.eclipse.core.commands.ParameterizedCommand.executeWithChecks(ParameterizedCommand.java:508)
                at org.eclipse.ui.internal.handlers.HandlerService.executeCommand(HandlerService.java:169)
                at org.eclipse.ui.internal.handlers.SlaveHandlerService.executeCommand(SlaveHandlerService.java:241)
                at org.eclipse.ui.menus.CommandContributionItem.handleWidgetSelection(CommandContributionItem.java:829)
                at org.eclipse.ui.menus.CommandContributionItem.access$19(CommandContributionItem.java:815)
                at org.eclipse.ui.menus.CommandContributionItem$5.handleEvent(CommandContributionItem.java:805)
                at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
                at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1053)
                at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4165)
                at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3754)
                at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:2701)
                at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:2665)
                at org.eclipse.ui.internal.Workbench.access$4(Workbench.java:2499)
                at org.eclipse.ui.internal.Workbench$7.run(Workbench.java:679)
                at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
                at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:668)
                at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149)
                at eu.etaxonomy.taxeditor.Application.start(Application.java:24)
                at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
                at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
                at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
                at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:344)
                at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                at java.lang.reflect.Method.invoke(Unknown Source)
                at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:622)
                at org.eclipse.equinox.launcher.Main.basicRun(Main.java:577)
                at org.eclipse.equinox.launcher.Main.run(Main.java:1410)
                at org.eclipse.equinox.launcher.Main.main(Main.java:1386)

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Updated by Katja Luther over 6 years ago

Status changed from New to Resolved
% Done changed from 0 to 50

Applied in changeset taxeditor|fa70a2efe1035f9f977cc24552dfbe07b8703ab9.

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Updated by Katja Luther over 6 years ago

Assignee changed from Katja Luther to Andreas Müller

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Updated by Andreas Müller over 6 years ago

Status changed from Resolved to Closed
Assignee changed from Andreas Müller to Katja Luther

Difficult to test as there is no description how to reproduce. Anyway I tested some deduplications and it works. Also as far I can see it was only one line of code that really changed. So I guess it is ok.

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