Activity
From 01/07/2017 to 02/05/2017
02/04/2017
- 10:47 AM Revision eec1cd2d (cdmlib-apps): ref #6410 add NepenthaceaeActivator
- 10:46 AM Revision 7d882578 (cdmlib-apps): ref #6362, ref #6365 remove occurrences of NonViralName, BotanicalName and ZoologicalName in cdmlib-app
- 10:35 AM Revision 67193ea6 (cdmlib): ref #6410 Nepenthaceae, handle known collections, issues and fulldates
- 10:02 AM Revision 3ee9fbcc (cdmlib): ref #6401, ref #6404 doc
02/03/2017
- 10:38 PM Revision 7e5f47cb (taxeditor): ref #2939 adapting taxeditor spring configuration to new ehCacheManager configuration - WARNING: store location still missing!
- 04:33 PM Revision 15911e5d (cdm-vaadin): ref #2939 adapting vaddin appcontext to new ehcache configuration
- 04:24 PM Revision e3e0e316 (cdmlib): ref #2939 taking configurations out of the compenent scan\n, a more finegraned strategy is needed for the variety of situations we have to deal with
- 04:24 PM Revision f2b6ba81 (cdmlib): ref #2939 renaming moved class references in log4j files
- 03:02 PM Revision cf4b82a5 (taxeditor): fix import issue
- 02:50 PM Revision a4caff94 (cdm-vaadin): ref #6362 fix NonViralName occurrence in vaadin
- 02:38 PM Revision 0de7b2f4 (cdmlib): simplify generics for SpecimenOrObservationBase
- 02:37 PM Revision 804a5884 (taxeditor): fix generics
- 02:03 PM Revision b8601e0c (taxeditor): ref #6362 remove occurrences of NonViralName in code and some cleanup
- 01:44 PM Revision 1dd3792c (cdmlib): ref #6409 preliminary set Level3 test to @Ignore to avoid infinite loop
- 01:44 PM Revision 514a53eb (cdmlib): cleanup
- 01:44 PM Revision aaf432fa (cdmlib): cleanup merge problems
- 01:44 PM Revision e2c8bd0e (cdmlib): cleanup
- 01:44 PM Revision d7919b1c (cdmlib): ref #6362, ref #6365 remove occurrence of NonViralName, BotanicalName, ZoologicalName and others
- 01:43 PM Revision 7a7b09d4 (cdm-dataportal): fixing 2 bugs in media caption creation
- 01:27 PM bug #6409 (Closed): Fix failing Level3 validation in ValidationTest introduced by removing TaxonNameBase subclasses
- method is testLevel3ValidationWithValidName was set to @Ignore
The problem occurs in org.hibernate.validator.inter... - 01:18 PM Revision 0afc0c3c (cdm-dataportal): palmweb: disabling custom media caption theme function
- 12:52 PM Revision d1b5fd22 (cdm-dataportal): Merge tag '4.5.4' into develop
- tag for hotfix release 4.5.4
- 12:52 PM Revision bc8dcfa0 (cdm-dataportal): Merge branch 'hotfix/4.5.4'
- 12:36 PM feature request #3580 (Duplicate): Write permission error with temporary cdmserver echache dir
- 12:33 PM bug #1753 (Worksforme): error in server due to level2 cache
- this is no longer a problem
- 12:29 PM feature request #5848 (Resolved): Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
- This issue most probably has been fixed while solving #2939
@Patrick: please review - 12:22 PM bug #2939 (Resolved): ehcache diskStore conflict?
- Applied in changeset commit:cdmlib|1fd4a547b99301f06524ab828dc5eb4ef8af3c10.
- 12:21 PM Revision 1fd4a547 (cdmlib): fix #2939 dynamic configuration of the ehcache store location per remote instance
- 12:21 PM Revision 7a0bcdb6 (cdmlib): ref #2939 refactoring CdmCacher to use cachemanger spring bean - not fully working yet
- 11:15 AM Revision 5805c395 (cdmlib): #6401 update generics for java1.8 upgrade
- 11:15 AM Revision 5a9b66ae (cdmlib): Cleanup
- 10:53 AM bug #6408 (Resolved): NPE in AbcdParseUtility
- Applied in changeset commit:cdmlib|5adaf48060a375396e01bbc9eaea06c114b0403a.
- 10:52 AM bug #6408 (Closed): NPE in AbcdParseUtility
- ~~~
login : admin
editor version : 4.5.1
server : 160.45.63.230 (edit-WS I) / caryophyllales_demo_01
schema... - 10:52 AM Revision 5adaf480 (cdmlib): fix #6408 Fix potential NPE in AbcdParseUtility
- 10:08 AM Revision 3a269e2c (taxeditor): ref #6401 Add comment for increasing tycho version
- 09:36 AM Revision 02569618 (taxeditor): ref #6401 Update jetty plugin to work with jdk1.8
- 09:36 AM Revision 606b6d7c (cdmlib): ref #6401 Update jetty plugin to work with jdk1.8
02/02/2017
- 11:04 PM bug #6404: StackOverflow when compiling large java classes in Java8 (jdk1.8)
- @PP: if you still if the old version of the compilerArgs, could you please add them to the ticket?
- 10:59 PM bug #6404 (Rejected): StackOverflow when compiling large java classes in Java8 (jdk1.8)
- We decided to NOT use the compilerArgs but rather try to fix the large class issue #6406.
Also the above compilerA... - 01:09 PM bug #6404 (Closed): StackOverflow when compiling large java classes in Java8 (jdk1.8)
- Andreas M.: Can you link the ticket for the MarkupTransformer class to this ticket?
- 01:06 PM bug #6404 (Rejected): StackOverflow when compiling large java classes in Java8 (jdk1.8)
- After updating to Java 8 compiling via `mvn clean install` results in a StackOverflow. (compiling in Eclipse works be...
- 11:03 PM bug #6407: Upgrade maven compiler plugin to latest version
- Maybe a related commit:1ddde622ae10b01976cdb99fb50a469a5506ca7e
- 10:58 PM bug #6407 (New): Upgrade maven compiler plugin to latest version
- Currently this is not yet possible as it results in test errors probably related to missing aspectj support. This pro...
- 05:16 PM bug #6405 (Closed): CdmPermissionVoter handles merged and separate CdmAuthorities the same
- 05:16 PM bug #6405: CdmPermissionVoter handles merged and separate CdmAuthorities the same
- reverting commit:cdmlib|5cb08c3f by commit:cdmlib|bb902a4
- 04:55 PM bug #6405 (Resolved): CdmPermissionVoter handles merged and separate CdmAuthorities the same
- Applied in changeset commit:cdmlib|3e29fc14020cbf9604f9ec4a8ae87fcadbbb3d3f.
- 02:56 PM bug #6405 (Closed): CdmPermissionVoter handles merged and separate CdmAuthorities the same
- The CdmPermissionVoter must take all CdmAuthorities into account which only differ by the property if any is defined ...
- 04:56 PM task #6401 (Resolved): Update working environment to jdk 1.8
- We still need to check for any dependencies that can be updated now. Or we leave this to the next general dependency ...
- 04:54 PM task #6401: Update working environment to jdk 1.8
- Some generics in model needed to be updated (no ticket for this). This also lead to a refactoring for DefinedTermBase...
- 04:51 PM bug #6406 (In Progress): Refactor MarkupTransformer class which is too large
- 04:50 PM bug #6406 (In Progress): Refactor MarkupTransformer class which is too large
- The large class creates problems when upgrading to java 1.8 (see #6401 and #6404).
As a work around we now comment... - 04:41 PM Revision b6bb07b9 (taxeditor): ref #6309 Add missing l10n String constant to Messages.java
- 04:35 PM Revision bb902a45 (cdmlib): Revert "ref #6401 fix failing SecurityTest (due to wrong handling of furtherVotingResult in CdmPermissionVoter"
- This reverts commit 5cb08c3f89abfd1bcb5af75f0b2882798418f27a.
- 04:35 PM Revision 3e29fc14 (cdmlib): fix #6405 more tests for CdmPermissionVoter.furtherVotingDescisions and fixing the premature returning of DENIED votes made there
- 04:35 PM Revision 792e3464 (cdmlib): ref #6405 tests for the CdmPermissionVoter
- 04:35 PM Revision ae3b8a5d (cdmlib): ref #922 and #6311 javadoc
- 04:30 PM bug #6311 (In Progress): Refactor IdentifiableEntity.compareTo method
- The 2 fixes dfc40f67 and 44e2abe8 primarily fixed #922 and not THIS ticket.
However, during this process we realiz... - 03:00 PM bug #6311 (Resolved): Refactor IdentifiableEntity.compareTo method
- Applied in changeset commit:cdmlib|dfc40f673035647ff6af03097229edd1e7712222.
- 01:27 PM bug #6311 (In Progress): Refactor IdentifiableEntity.compareTo method
- 04:21 PM feature request #922 (Resolved): Implement compareTo method in IdentifiableEntity properly
- Revision showed that
* the method was never used by different classes and therefore the parameter does not need t... - 04:05 PM Revision 44e2abe8 (cdmlib): ref #6311 further refactoring for compareToEntity
- 04:05 PM Revision 2fd31c0f (cdmlib): cleanup
- 03:42 PM Revision de118cd2 (taxeditor): ref #6401 Update taxeditor workspace plugins to java 8
- 03:06 PM Revision 504f6f42 (cdmlib): cleanup
- 03:00 PM Revision dfc40f67 (cdmlib): fix #6311 move compareToEntity method to TaxonName and TaxonBase classes and refactor
- 02:59 PM Revision 64923004 (cdmlib): Remove generics from BacterialNameDefaultCacheStrategy
- 02:58 PM Revision 168e8915 (cdmlib): ref #6401 Adapt generics in agent base and others
- 02:55 PM Revision 940ecc18 (cdmlib): cleanup
- 02:12 PM Revision a9450437 (taxeditor): ref #6401 Refactor comparison of specimens in factual data view
- - use titleCache comparison instead of comparing the objects themselves
- also fixes compile error for jdk1.8 - 02:11 PM Revision ca14b284 (cdmlib): ref #6401 Remove compiler args for increased stack size
- 02:10 PM bug #6304 (Resolved): Deleting of Person used as user does not work
- Applied in changeset commit:taxeditor|d1428f78d00bd439e471e03c5a13a68763818c29.
- 02:10 PM Revision d1428f78 (taxeditor): fix #6304: before deleting a person in bulkeditor check with isDeletable
- 01:56 PM bug #6309: Creating an existing user throws exception
- added a check for existence of users with the same username before saving the new user
- 01:54 PM bug #6309 (Resolved): Creating an existing user throws exception
- Applied in changeset commit:taxeditor|afc2457c7a4661cd1577fd486211da032354a61c.
- 01:54 PM Revision afc2457c (taxeditor): fix #6309: check for existence of user before saving a new user
- 01:53 PM Revision 0e5acce8 (cdmlib): merge for groups has to check for existing and changed authorities before merge the group
- 01:37 PM bug #6388 (Resolved): Duplicate entry exception when adding types to a taxon
- should be solved with fixing #6300. Could not reproduce it anymore.
- 01:07 PM bug #6300: DataIntegrityViolationException when saving a type
- Applied in changeset commit:taxeditor|e904eb89dc409f901b858e5936cbc08eef82f7fc.
- 01:06 PM bug #6300 (Resolved): DataIntegrityViolationException when saving a type
- I removed the bindNullSession call and now it works. Please have a look, if everything else works, too. (I tested cre...
- 01:03 PM Revision aa819c53 (taxeditor): remove comment
- 01:01 PM Revision e904eb89 (taxeditor): fix #6300: the newDerivedUnitWizard should not have a session
- 11:50 AM Revision a24dbf07 (cdmlib): emall fix for selection of reference as inreference
- 10:52 AM bug #5216: Changing the CRUD flags of an existing GrantedAuthority in the CdmAuthorityEditorInput causes an MySQLIntegrityConstraintViolationException
- added a check for existence of all authority strings and replace the already existing ones with the ones already in d...
- 10:04 AM bug #5216 (Resolved): Changing the CRUD flags of an existing GrantedAuthority in the CdmAuthorityEditorInput causes an MySQLIntegrityConstraintViolationException
- Applied in changeset commit:taxeditor|a789364c344b94462f1e277ee1855eea2615e59b.
- 10:46 AM Revision 27c25f7e (taxeditor): minor
- 10:04 AM Revision a789364c (taxeditor): fix #5216: merge grantedAuthority checks for existing grantedAuthority first and some other fixes for grantedAuthority handling in editor
- 08:41 AM bug #6403 (New): palmweb: Show image thumbnail tickbox no longer working
- This could be due to divergence of the palmweb special code with the dataportal core code.
The purpose of the specia... - 08:35 AM bug #6402 (New): palmweb: remove comment module related code and disable comments
- 07:51 AM task #6392 (Closed): selenium tests for palmweb uses data
- 01:58 AM Revision 72084210 (cdmlib): ref #6401 Upgrade jetty plugin to support j1.8
- 01:29 AM Revision f0aff81a (cdmlib): ref #6401 temporarily remove uuids from MarkupTransformer to allow compiling
- 12:26 AM Revision e2d30c43 (cdmlib): ref #6401 Improve generics for TypeDesignationStatusBase and RelationshipTermBase
- 12:23 AM Revision ad631208 (cdmlib): ref #6401 fix compilation errors in OrderedTermBaseTest
- 12:19 AM Revision 5cb08c3f (cdmlib): ref #6401 fix failing SecurityTest (due to wrong handling of furtherVotingResult in CdmPermissionVoter
- 12:17 AM Revision 53c346f1 (cdmlib): ref #6401 better distinguish IdentifiableEntity.compareTo from DefinedTermBase.compareTo
- * this is to avoid jumping to IdentifiableEntity.compareTo if DefinedTermBase.compareTo does not match generics exactly
- 12:04 AM Revision b1398c11 (cdmlib): Cleanup
02/01/2017
- 09:37 PM Revision caea94d1 (cdmlib): ref #6401 revert maven compiler plugin version as it leads to failing tests (probably related to aspectj issues and maybe others)
- 08:44 PM task #1606: Restrict filtered selection of in references to the respective reference types
- Katja Luther wrote:
> Applied in changeset commit:cdmlib|a80bb20e9da22230326d65598b4cf07ff1a5dff5.
There was a ... - 11:44 AM task #1606: Restrict filtered selection of in references to the respective reference types
- implemented for:
Article -> journal
InProceedings -> proceedings
Booksection -> book
book -> printSeries
proce... - 11:40 AM task #1606 (Resolved): Restrict filtered selection of in references to the respective reference types
- Applied in changeset commit:cdmlib|a80bb20e9da22230326d65598b4cf07ff1a5dff5.
- 08:41 PM Revision f4a1c455 (cdmlib): ref #1606 fix bug in referenceDao.getUuidAndTitleCache
- 08:37 PM Revision 5a0834fb (cdmlib): Cleanup
- 06:01 PM Revision e9c765f3 (taxeditor): increase maven-source-plugin, decrease tycho
- 04:44 PM Revision 57db64f2 (taxeditor): Update tycho version
- 04:09 PM Revision ef029497 (taxeditor): ref #6401 Update taxeditor to jdk1.8
- - Fix generic problems
- 03:34 PM Revision 5575b26c (cdmlib): ref #6392 ref #6374 fixing markerType filter was ignored
- 03:19 PM Revision 2a25d458 (cdmlib): ref #6401 Fix problems with generics due to jdk1.8
- 02:15 PM bug #3737: Protected caches for taxa and names behave inconsistent
- please review
- 02:14 PM bug #3737 (Resolved): Protected caches for taxa and names behave inconsistent
- Applied in changeset commit:taxeditor|a452be91ae106b545b4393798e666aef347a0ef1.
- 02:14 PM Revision a452be91 (taxeditor): fix #3737: improve handling of protected/not protected cache fields
- 01:54 PM task #6392 (Resolved): selenium tests for palmweb uses data
- Applied in changeset commit:cdm-dataportal|1b756c5f0a44f01502a0f88ff155e124e93860c8.
- 09:28 AM task #6392 (In Progress): selenium tests for palmweb uses data
- 01:54 PM Revision 1b756c5f (cdm-dataportal): fix #6392 test for uses and use records and refactoring of the uses feature block
- - fixing wrong assumptions for cyprus
- bibliography as pseudo feature block better testable - 11:57 AM Revision 3c5fd363 (cdmlib): ref #6401 Updated cdmlib to jdk1.8
- - Had to increase the parser stack size to avoid StackOverflow when
parsing large java classes
- https://maven.apac... - 11:49 AM task #6401 (Closed): Update working environment to jdk 1.8
- 11:43 AM Revision 6478a5d8 (cdmlib): fix #1606: minor
- 11:39 AM Revision a80bb20e (cdmlib): fix #1606: add generic type to all filters
- 11:11 AM Revision 16b736f1 (taxeditor): ref #1606: for inReferences use service methods filtering for the right referencetype
- 11:05 AM Revision 71bfbee0 (cdmlib): ref #1606: add methods to provide filter for reference type
- 09:24 AM Revision b9a4f351 (cdm-dataportal): ref #6392 problems in selenium tests for palmweb solved
- - disabled test active again
- splitting huge test method into multiple
- trimming reference citation strings in ... - 09:20 AM Revision 5e1b1f4e (cdm-dataportal): duplicating images in flora malesiana theme to fix missing images in integration portals
- 09:18 AM Revision bf4b3dfa (cdm-dataportal): using glue string for distribution list
- and using this for palmweb to make the original layout working again
- 09:16 AM Revision e6dec945 (cdm-dataportal): harmonizing indentation of feature block distribution
- 09:15 AM Revision c59f8a57 (cdm-dataportal): fixing invalid xpath to link elements
01/31/2017
- 04:03 PM Revision 4295d33d (cdm-dataportal): ref #6374 moving cdm_block_use_description_content to includes files
- 04:02 PM Revision d192702d (cdm-dataportal): ref #6374 using the correct feature block settings for use descriptions
- 02:49 PM bug #6138 (In Progress): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
- in eclipse the test is successfull, but with maven it fails...
- 12:56 PM bug #6138 (Resolved): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
- 12:55 PM bug #6138: fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
- the test does not fail anymore.
- 02:48 PM Revision e8b30a54 (cdmlib): fix #4390: add missing check for protected titleCache
- 02:16 PM bug #6374 (Closed): Uses no longer shown in palmweb portal broken
- 02:02 PM bug #6374 (Resolved): Uses no longer shown in palmweb portal broken
- Applied in changeset commit:cdm-dataportal|4feafea8403142f30c31c0a612b0b2a2de1f76bf.
- 02:02 PM Revision 4feafea8 (cdm-dataportal): fix #6374 fixing messed up UUIDs and harmonizing use descriptions block creation
- 02:01 PM Revision 99f17fa9 (cdm-dataportal): fixing type in documentation
- 02:00 PM Revision 867bd81d (cdmlib): fix #4390: update titlecache only for SpecimenOrObservationBase entities
- 12:45 PM bug #4390: Titlecache of field unit does not update when changing field unit data via derived unit facade
- please review
- 12:44 PM bug #4390 (Resolved): Titlecache of field unit does not update when changing field unit data via derived unit facade
- Applied in changeset commit:cdmlib|5d6b7e01b19c421947455d7a74bd97a907de60aa.
- 12:44 PM Revision 5d6b7e01 (cdmlib): fix #4390: update titlecache for all merged identifiableEntities
- 12:10 PM bug #5924 (Resolved): Change password leads to bad credentials
- Applied in changeset commit:taxeditor|1c082d5b9b3063e5be95e2520fdb6c4a62da2388.
- 12:10 PM Revision 1c082d5b (taxeditor): fix #5924: reauthenticate after changing the password
- 11:49 AM feature request #6076: Specimen biocase search should work on observations
- the search works on all record basis now.
we need to check whether the model covers all types. - 11:37 AM bug #6336 (Resolved): NPE when deleting recently created media
- this is already fixed. see associated revision.
01/30/2017
- 08:50 PM Revision 55dd353b (cdmlib): ref #6362 remove further occurrences of NonViralName
- 05:52 PM bug #6400 (New): Palmweb feature 'Number of Taxa' no longer working
- reported in 'RE: A few problems with EDIT Platform 3.3.3' by Lauren Gardiner (28.04.2014 15:19) :
----
'Number ... - 04:50 PM bug #6374: Uses no longer shown in palmweb portal broken
- was still broken due to #6398
- 04:47 PM bug #6398 (Closed): portal/taxon/{uuid}/descriptions.json with markerType-filter returns no data
- 03:33 PM bug #6398 (Resolved): portal/taxon/{uuid}/descriptions.json with markerType-filter returns no data
- Applied in changeset commit:cdmlib|f540b1391e26e2dd6733d19bff2bfb2cfa3c40fa.
- 01:43 PM bug #6398 (Closed): portal/taxon/{uuid}/descriptions.json with markerType-filter returns no data
- The portal web service `portal/taxon/{uuid}/descriptions.json` with `markerType` filter returns no data.
In contrast... - 04:43 PM Revision d3616f2c (cdm-dataportal): ref #6398 adapting dataportal to harmonized description related taxon service endpoints
- 03:53 PM feature request #6367 (In Progress): Make NomenclaturalCode an attribute ("type") of TaxonNameBase
- 03:33 PM Revision f540b139 (cdmlib): fix #6398 messing up and harmonizing description related taxon service endpoints
- 03:33 PM Revision f2f1be49 (cdmlib): removing unused method which was created for palmweb
- 03:27 PM bug #6322: In the specimen editor showing the warning for long loading times already has a long loading time
- Check first on production.
- 02:59 PM bug #6347: Improve layout for navigator sorttype selection
- .. or use dropdown
- 02:53 PM bug #6372 (Resolved): NPE when using ShowView - Datasource
- Applied in changeset commit:taxeditor|a286b342b8d1606be85d96505eb507fe93abe97b.
- 02:53 PM Revision a286b342 (taxeditor): fix #6372 fix NPE in datasource view
- 02:37 PM bug #6389: Returning a Map in cdmlib leads to data loss
- Check if this method is used elsewhere. If not make it deprecated with reason that it currently gives not the expecte...
- 01:52 PM feature request #6399 (Closed): Add admin property frequently used biocase provider
- For a better handling in biocase import we need an admin property which contains the main biocase provider of the pro...
- 01:42 PM Revision e48774bc (taxeditor): ref #6365 use TaxonNameFactory for factory methods in TaxEditor
- 01:28 PM Revision ded3de15 (cdmlib-apps): ref #6365 use TaxonNameFactory for factory methods in cdmlib-app
- 01:12 PM Revision 5d206c8e (cdmlib): ref #6365 use TaxonNameFactory for static parser methods
- 12:09 PM bug #6397 (Closed): palmweb: various feature blocks missing
- 12:03 PM bug #6397 (Resolved): palmweb: various feature blocks missing
- Applied in changeset commit:cdm-dataportal|caab0bd280def9962d6c979e41719ce462c35163.
- 11:33 AM bug #6397: palmweb: various feature blocks missing
- This is a bug which has been introduced while solving #6114 and #4379 commit.
- 10:46 AM bug #6397 (Closed): palmweb: various feature blocks missing
- In the palmweb portal various feature blocks are missing.
At the example of *Calamus aruensis*:
This taxon has ... - 12:03 PM Revision 20541fd4 (cdm-dataportal): Merge tag '4.5.3' into develop
- tag for hotfix release 4.5.3
- 12:02 PM Revision 037cdbf5 (cdm-dataportal): Merge branch 'hotfix/4.5.3'
- 12:02 PM Revision caab0bd2 (cdm-dataportal): fix #6397 ref #4379 fixing empty feature block content detection
- 11:07 AM Revision fe34a9eb (cdmlib): ref #6365 use TaxonNameFactory for botanical names
- 10:56 AM Revision 033fa0b2 (cdmlib): ref #6365 use TaxonNameFactory for zoological names
- 10:55 AM Revision a24ddafd (cdm-dataportal): removing invalid uuid constant
- 10:52 AM task #6360: Move NonViralName functionality to TaxonNameBase
- Applied in changeset commit:cdmlib|df5738fefc6971d38b6cb364accd0b38af6a69d8.
- 10:52 AM Revision df5738fe (cdmlib): fix #6360 use TaxonNameFactory for NonViralNames
- 10:45 AM task #6364 (Resolved): Merge viral names and bacterial names into TaxonNameBase
- Applied in changeset commit:cdmlib|6369aae2b548ac9f046ff2a8e755326226ec7904.
- 10:45 AM Revision 6369aae2 (cdmlib): fix #6364 use TaxonNameFactory for viral and bacterial names
- 10:41 AM task #6366 (Resolved): Merge cultivar names into TaxonNameBase
- Applied in changeset commit:cdmlib|174ae83b06b5d01305560d46a3391c520d471354.
- 10:38 AM Revision 174ae83b (cdmlib): fix #6366 use TaxonNameFactory for cultivar names
- 01:34 AM Revision 6de1d1c3 (taxeditor): ref #6365 ref #6366 ref 6364 Update CdmModelCacher in TaxEditor
- 01:29 AM Revision 42f99e54 (taxeditor): ref #6362 and ref #6365 remove some NVN and Bot/Zoo name occurrences in TaxEditor
- 12:24 AM Revision 396a8759 (cdmlib): ref #6362 remove some further NVN occurrences
- 12:24 AM Revision 6eeff533 (cdmlib): ref #6365 Move zoological parse methods to TaxonNameBase
- 12:24 AM Revision 066f7886 (cdmlib): Remove isCodeCompliant from TaxonNameBase
- 12:24 AM Revision 2d370ced (cdmlib): ref #6366 move cultivar attributes and functions to TaxonNameBase
- 12:24 AM Revision e8b59a14 (cdmlib): cleanup
- 12:24 AM Revision da39aca0 (cdmlib): ref #6365 merge static methods from BotanicaName to TaxonNameBase
- 12:24 AM Revision 0d8c0513 (cdmlib): ref #6365 ref #6360 ref #6364 replace taxon name factory methods
- 12:24 AM Revision 18b50091 (cdmlib): ref #6365 replace ZoologicalName factory methods
- 12:24 AM Revision 5b88f807 (cdmlib): ref #6360 replace NonViralName factory methods
- 12:24 AM Revision 8eea91a5 (cdmlib): ref #6365 Move all ZoologicalName attributes up to TaxonNameBase
- 12:24 AM Revision 536aae8b (cdmlib): ref #6364 Move all BacterialName attributes up to TaxonNameBase
- 12:24 AM Revision 02736ff3 (cdmlib): ref #6364 Move all ViralName attributes up to TaxonNameBase
- 12:24 AM Revision 1ff3286f (cdmlib): minor
01/28/2017
01/27/2017
- 05:29 PM bug #6365: Merge botanical and zoological names into TaxonNameBase
- moving "anamorphic" requires an update script.
- 01:10 AM bug #6365 (In Progress): Merge botanical and zoological names into TaxonNameBase
- 05:09 PM bug #6382 (Closed): option to supply user credentials in the admin setting for the freetext index triggers
- 05:09 PM bug #6393 (Closed): manage/* web service can be used by ajax requests
- 02:12 PM bug #6393 (Resolved): manage/* web service can be used by ajax requests
- Applied in changeset commit:cdmlib|1a5de38db1f2422d9596b1bb6fbba7a130b0c00e.
- 02:08 PM bug #6393 (Closed): manage/* web service can be used by ajax requests
- As of `/manage/*` requiring authentication these services can no longer be used via ajax with cross domain requests. ...
- 05:05 PM feature request #6396 (New): taxontree takes HTTP_REFERER into account to focus on the previously visited taxon page
- The taxon tree should evaluate taxon uuids in the HTTP_REFERER.
This will allow to the taxontree to be open at the... - 04:03 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
- I just had the same problem:
1. I tried to push but the VPN connection was disconnected.
1. After connecting via ... - 04:02 PM Revision 59cd56c3 (taxeditor): Reverting the last version updates
- 03:55 PM Revision f9379882 (taxeditor): Increase java code level to java 1.8
- 03:32 PM feature request #6390: Details view for misapplied names
- WGB: Habe wg. lat. Formulierung für "missapplied acc. to" eine Anfrage an Greuter geschickt.
- 12:09 PM feature request #6390 (Closed): Details view for misapplied names
- We need a details view for misapplied names to allow editing also information within the concept relationship (most i...
- 03:21 PM feature request #6395: Define a taxon concept relationship for somehow related concepts
- AM: Die Frage wäre nur, wie der Typ genauso definiert und gelabelt sein könnte. Z.B. „deviating concept“? Und im Menu...
- 02:54 PM feature request #6395 (New): Define a taxon concept relationship for somehow related concepts
- These concepts are currently often handled as misapplications which is wrong. For a discussion see #6112.
- 02:52 PM feature request #6394 (New): Allow additional taxon relationships in TaxEditor to be handled similar to misapplications
- Currently users create misapplications when they want to add somehow related but differing concepts. For a discussion...
- 02:12 PM Revision 1a5de38d (cdmlib): fix #6393 enabling manage services to be accessed via ajax with authentication
- 01:07 PM Revision ed925ac3 (taxeditor): Update tycho version from 0.22.0 to 0.26.0
- 12:19 PM task #6392 (Closed): selenium tests for palmweb uses data
- Taxa as test cases:
* Phytelephas macrocarpa Ruiz & Pav.
* many UseDescriptions (UseRecords)
* Calamus aruensis... - 12:18 PM bug #6374: Uses no longer shown in palmweb portal broken
- This went to the hotfix, and should be reviewed. If possible this should be done by Bill since I am not sure if all U...
- 12:00 PM bug #6374: Uses no longer shown in palmweb portal broken
- Can this be closed or should it be reviewed. Is it the correct milestone (went into hotfix?).
- 12:14 PM feature request #6391: Show misapplied name concept relation attributes in data portal
- More or less blocked by #6390 as we do not have data yet. However, it could be implemented already.
- 12:13 PM feature request #6391 (New): Show misapplied name concept relation attributes in data portal
- for more information see #6390
- 12:02 PM bug #6381 (In Progress): Specimen titleCache should include barcode or catalogue number if accession number not exists
- 01:09 AM task #6362 (In Progress): Remove occurrence of NonViralName in code
01/26/2017
- 11:50 PM task #6364 (In Progress): Merge viral names and bacterial names into TaxonNameBase
- 07:53 PM Revision 1b7f25fe (taxeditor): ref #6389 avoid service call for icon determination (performance)
- - additionally the service call returned undeterministic results
- 07:44 PM bug #6389 (Closed): Returning a Map in cdmlib leads to data loss
- I added the following method to IService/ServiceBase. I then invoked it on the taxeditor side in different places. Th...
- 05:41 PM bug #6388 (Closed): Duplicate entry exception when adding types to a taxon
- Steps to reproduce:
1. Open any species
1. Add a new type designation in the details view
1. Click "browse" to c... - 05:02 PM Revision ac5fb7af (cdmlib-apps): ref #6369 adapt existing occurrences of interface to removed generics in cdmlib-app
- 05:02 PM Revision c8a87de9 (cdmlib-apps): adapt pom version in cdmlib-app
- 04:59 PM feature request #6369 (Resolved): Create interfaces for TaxonName types
- Applied in changeset commit:cdmlib|3786c4c9973a9249a6680a31501dfea67c47309d.
- 04:59 PM Revision 3d58795e (cdmlib): ref #6369 adapt existing occurrences of interface to removed generics
- 04:58 PM Revision 8fd3a2d7 (cdmlib): ref #6369 remove generics from interfaces
- 04:57 PM Revision 3786c4c9 (cdmlib): fix #6369 add interface for all names
- 04:56 PM Revision 47341693 (cdmlib): ref #6369 add IViralName interface
- 04:27 PM Revision 8fd7eb1d (cdmlib): ref #6369 add remaining interfaces
- 04:21 PM feature request #6387 (Closed): [Rule] Rank rule for CultivarPlantNames
- The only possible ranks for cultivars are CULTIVAR, GREX, CULTIVAR_GROUP, GRAFT_CHIMAERA or DENOMINATION_CLASS.
Se... - 04:00 PM Revision 951f636d (cdmlib): ref #6362 removed some NonViralName occurrences (make it compiling again)
- 04:00 PM Revision 624126f1 (cdmlib): ref #6369 Add interfaces for TaxonNameBase and NonViralName
- 04:00 PM Revision dea59ff1 (cdmlib): cleanup
- 04:00 PM Revision a4c9dfc9 (cdmlib): ref #6362 removed some NonViralName occurrences (non-compiling as changing in model are still missing)
- 03:10 PM Revision f0fba95f (taxeditor): (java)doc
- 02:26 PM Revision 6892d459 (taxeditor): ref #6360 and ref #6369 update cached model in taxeditor
- 12:00 PM Revision f5ed8961 (taxeditor): manually set version numbers
01/25/2017
- 06:10 PM bug #6382 (Resolved): option to supply user credentials in the admin setting for the freetext index triggers
- Applied in changeset commit:cdmlib|ac32d8ec395f8a22d3c787092f25c54a70ec0b2c.
- 04:40 PM bug #6382 (In Progress): option to supply user credentials in the admin setting for the freetext index triggers
- The modifed URLs in the trigger links do not work. It seems as if the Jquery ajax function in cdmlib-remote-webapp/sr...
- 06:09 PM Revision ac32d8ec (cdmlib): fix #6382 proper handling of authentication in cdm_ws_progress.js
- 04:32 PM bug #6373 (Closed): LIE during request to /portal/descriptionElement/byTaxon
- works!
- 02:52 PM Revision 36fa4de1 (taxeditor): manually setting the project and cdmlib version to 4.6.0-SNAPSHOT
- 02:04 PM bug #6386 (Worksforme): wrong taxeditor develop branch version after taxeditor-HFX-*
- The problem was actually introduced by a manual merge of the develop branch into the hotfix branch commit:taxeditor|c...
- 01:05 PM bug #6386 (Worksforme): wrong taxeditor develop branch version after taxeditor-HFX-*
- After running the taxeditor-HFX-* jobs the version in the develop branch is set to the release version. it should how...
- 12:54 PM Revision c683d6af (cdmlib): Revert "Revert "ref #6369 Add interfaces for TaxonNameBase and NonViralName""
- This reverts commit 949c09b142f2806539e3fb399bef980d3e17e293.
- 12:54 PM Revision 682caf2f (cdmlib): Revert "Revert "fix #6360 moved all NonViralName functionality to TaxonNameBase""
- This reverts commit 9b9d0a956d78e3aec1024bc0a5fa33f33e5b33aa.
- 12:51 PM Revision edc792d8 (cdmlib): minor
- 12:45 PM bug #6088: New reproducable multiple representations exception for name relationships
- Hallo,
das Problem beim Speichern von Name Relationships ( s.u. "Multiple representations of the same entity") schei... - 12:45 PM bug #6088: New reproducable multiple representations exception for name relationships
- Hallo,
das erste der letzten Mittwoch gemeldeten Probleme habe ich nun auch in einem zweiten Fall, scheint also ni... - 12:42 PM bug #6385: Specimen Editor should handle new search same as bulk editor
- Katja, could you please add the existing similar ticket for the bulk editor as a related ticket?
- 12:41 PM bug #6385 (Closed): Specimen Editor should handle new search same as bulk editor
- For the bulk editors we realised that a new search should trigger a completely new session. Which also includes askin...
- 11:05 AM Revision f13242a4 (cdm-server): Merge branch 'hotfix/4.5.1' into develop
- 11:05 AM Revision ccdba3a0 (cdm-server): Merge branch 'hotfix/4.5.1'
- 11:05 AM Revision 14050181 (cdm-server): jenkins: setting project version to 4.5.1
- 10:50 AM Revision 4aa72253 (cdm-dataportal): Merge tag '4.5.2' into develop
- tagging hotfix release 4.5.2
- 10:49 AM Revision 91f92da0 (cdm-dataportal): Merge branch 'hotfix/4.5.2'
- 10:33 AM feature request #6187: [DISCUSS] Ask W.Greuter about "type providing name"
- AM: In anderem Zusammenhang habe ich dich so verstanden, dass es pro homotypische Gruppe immer nur einen type providi...
- 10:32 AM bug #6136: Implement type providing name in homotypical group
- AM: In anderem Zusammenhang habe ich dich so verstanden, dass es pro homotypische Gruppe immer nur einen type providi...
- 10:23 AM Revision 5d2ae3d8 (taxeditor): Merge branch 'hotfix/4.5.1' into develop
- 10:23 AM Revision 8bbae356 (taxeditor): Merge branch 'hotfix/4.5.1'
- 10:22 AM task #6384 (Closed): update BGBM logo
- Ach übrigens ist mir gerade aufgefallen, dass im Footer von https://cybertaxonomy.eu/eu-bon/utis/1.2/ immer noch das ...
- 10:19 AM bug #6383: fatal error on git push: The remote end hung up unexpectedly
- After the above modification the cdm-webapp-HFX-FINISH job was running successfully. This could mean that the probelm...
- 10:13 AM bug #6383 (In Progress): fatal error on git push: The remote end hung up unexpectedly
- 10:12 AM bug #6383: fatal error on git push: The remote end hung up unexpectedly
- attempting to ssh into the server as `ssh git@dev.e-taxonomy.eu` raises a error message:
~~~
...
Last login: Fri... - 09:53 AM bug #6383 (Closed): fatal error on git push: The remote end hung up unexpectedly
- This frequently breaks jobs in the release pipeline and always causes the affected job to fail. It also occurs in oth...
- 10:14 AM Revision 2f602d46 (cdm-webapp): Merge branch 'hotfix/4.5.1' into develop
- 10:14 AM Revision 20cdac33 (cdm-webapp): Merge branch 'hotfix/4.5.1'
- 10:14 AM Revision 196034e6 (cdm-webapp): jenkins: setting project version to 4.5.1
- 09:47 AM Revision f66eceb1 (cdm-webapp): jenkins: setting project version to 4.5.1
- 09:43 AM Revision 0a601525 (cdm-webapp): jenkins: setting project version to 4.5.1
- 09:41 AM Revision a8b76356 (cdm-webapp): jenkins: setting project version to 4.5.1
- 09:35 AM Revision 23fe0a9b (cdm-webapp): jenkins: setting project version to 4.5.1
- 09:07 AM Revision 1f172a8f (taxeditor): remove private source path
01/24/2017
- 05:36 PM Revision 5d6f6634 (cdm-webapp): Merge branch 'hotfix/4.5.1'
- 05:34 PM Revision 56e7c172 (cdm-vaadin): Merge branch 'hotfix/4.5.1' into develop
- 05:34 PM Revision 539a958a (cdm-vaadin): Merge branch 'hotfix/4.5.1'
- 05:34 PM Revision c0dbf9c5 (cdm-vaadin): jenkins: setting project version to 4.5.1
- 04:18 PM Revision 3ae260cf (cdm-vaadin): Merge branch 'hotfix/4.5.1' into develop
- 04:18 PM Revision 8ad6bb2a (cdm-vaadin): Merge branch 'hotfix/4.5.1'
- 04:09 PM Revision 9c45d4e5 (cdmlib): Updating develop poms back to pre merge state
- 04:09 PM Revision bf63ed3d (cdmlib): Merge branch 'master' into develop
- 04:09 PM Revision 66ea84af (cdmlib): Updating develop poms to hotfix version to avoid merge conflicts
- 04:09 PM Revision 410d763f (cdmlib): Merge branch 'hotfix/4.5.1'
- 04:03 PM Revision 5ab799e7 (cdm-server): updating poms for 4.5.1 branch with snapshot versions
- 04:02 PM Revision c84fdad1 (taxeditor): Merge branch 'develop' into hotfix/4.5.1
- Conflicts:
eu.etaxonomy.taxeditor.application/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.application/pom.xml
eu.e... - 03:54 PM Revision 8eaf1aa8 (cdm-webapp): jenkins bumping cdmlib.version to 4.5.1 cdm.vaadin.version to 4.5.1
- 03:53 PM Revision f3cacdad (cdm-webapp): updating poms for 4.5.1 branch with snapshot versions
- 03:53 PM Revision 6a2d72d8 (cdm-vaadin): jenkins bumping cdmlib.version to 4.5.1
- 03:53 PM Revision dc5c80e1 (cdm-vaadin): updating poms for 4.5.1 branch with snapshot versions
- 03:52 PM Revision eb48a4b2 (taxeditor): Updated version in pom / project files to taxeditor version : 4.5.1 and cdmlib version : 4.5.1
- 03:52 PM Revision 30c31800 (cdmlib): updating poms for branch'hotfix/4.5.1' with non-snapshot versions
- 03:47 PM bug #6382 (Resolved): option to supply user credentials in the admin setting for the freetext index triggers
- Applied in changeset commit:cdm-dataportal|c9b3fcf51a4ce188734069f350964233b0bd7aee.
- 03:46 PM bug #6382 (Closed): option to supply user credentials in the admin setting for the freetext index triggers
- The credentials must not be stored in the settings
- 03:47 PM Revision c9b3fcf5 (cdm-dataportal): fix #6382 option to supply user credentials in the admin setting for the freetext index
- 02:44 PM bug #6380: typedesignations missing in homotypic group
- >A solution would be to use the existing >`eu.etaxonomy.cdm.persistence.dao.name.IHomotypicalGroupDao.getTypeDesignat...
- 12:47 PM bug #6380 (Closed): typedesignations missing in homotypic group
- This issue seems to occur only in special cases but point out a general problem with the way the typedesignations are...
- 02:35 PM bug #6381 (Closed): Specimen titleCache should include barcode or catalogue number if accession number not exists
- 02:27 PM bug #6376 (Resolved): NPE when deduplicating agent
- Applied in changeset commit:taxeditor|fa70a2efe1035f9f977cc24552dfbe07b8703ab9.
- 09:40 AM bug #6376 (Closed): NPE when deduplicating agent
- Hi,
folgende Fehlermeldung kam eben beim Deduplizieren.
schöne Grüße, Nadja
~~~
login : n.korotkova
editor... - 02:10 PM Revision fa70a2ef (taxeditor): fix #6376: remove markAsDelete for merged items in bulk editor
- 01:41 PM Revision be193783 (cdmlib): Merge branch 'develop' into hotfix/4.5.1
- 01:39 PM Revision 345e6049 (cdmlib): updating poms for 4.5.1 branch with snapshot versions
- 01:38 PM Revision 9b9d0a95 (cdmlib): Revert "fix #6360 moved all NonViralName functionality to TaxonNameBase"
- This reverts commit 7d8c96134bda3c11d053df2e8e5d03f32a500ee3.
- 01:38 PM Revision 949c09b1 (cdmlib): Revert "ref #6369 Add interfaces for TaxonNameBase and NonViralName"
- This reverts commit 1e42628a4c24232f9b03a2a1e508d7cd79e0e0ba.
- 12:20 PM bug #6379 (Worksforme): specimens of lectotypes not shown in portal
Cichorieae: The Name *Hypochaeris achyrophorus* has a Lectotype with a specimen: Herb. Clifford: 385, Hypochaeris 1...- 10:20 AM bug #6378 (New): Check if PlinianCore is relevant for us
- https://github.com/tdwg/PlinianCore/wiki
Plinian Core - 09:55 AM task #6377 (New): Add DAFOR vocabulary for organismQuantityType
- Dominant-
Abundant-Frequent-Occasional-Rare
====
For abundance you could use organismQuantity in conjunction w... - 09:30 AM bug #6375 (Closed): footnotes on sensu references must not be prefixed with 'sensu'
- Walter wrote:
http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/c40f3ad5-e921-4d34-b8e4-f7235d3db73e... - 08:49 AM bug #6255 (Resolved): jenkins job cdm-webapp-HFX-FINISH fails due to merge conflict
- I created a new job based on taxeditor-HFX-FINISH, the old one is preserved as *cdm-webapp-HFX-FINISH (BACKUP)* which...
01/23/2017
- 04:39 PM Revision 3443cc03 (cdm-dataportal): ref #6374 fixing hard-coded uses feature uuid
- 04:37 PM bug #6374 (Closed): Uses no longer shown in palmweb portal broken
*Iriartea deltoidea*:
http://edit.dev/d7/palmae/cdm_dataportal/taxon/ce870eca-0422-4a3c-b849-0f5ca0370b1f- 04:26 PM Revision 28ec5a3e (cdm-dataportal): avoiding error in feature block generation for bibliography and other sythetic features
- 03:24 PM Revision 1d4ed7b6 (cdmlib): code cleaning
- 03:19 PM Revision dee9eacd (cdmlib): Fix potential NPE when there is a facade with no derived unit
- 03:19 PM Revision 128891d7 (taxeditor): Correctly set default values for EntitySelectionElements
- 02:15 PM bug #6373 (Resolved): LIE during request to /portal/descriptionElement/byTaxon
- Applied in changeset commit:cdmlib|be36c37f254cc5d6f7b6297547714fc8121e2017.
- 01:31 PM bug #6373 (Closed): LIE during request to /portal/descriptionElement/byTaxon
- ~~~
Caused by: net.sf.json.JSONException: org.hibernate.LazyInitializationException: failed to lazily initialize a c... - 02:15 PM Revision be36c37f (cdmlib): fix #6373 fixing MediaAutoInitializer
- 01:53 PM Revision c616b466 (cdmlib): revert last minor change in misapplied name search
- 01:35 PM Revision bf021c7c (cdmlib): minor
- 01:03 PM Revision a6f0466b (cdmlib): fix tests
- 12:58 PM Revision 87bd41bc (taxeditor): Fix LibrAlign dependencies
- 12:49 PM Revision 7f98f132 (taxeditor): Merge branch 'develop' into LibrAlign
- 12:26 PM Revision 4e6f5b53 (cdmlib): ref #6296 confirming that modified expectations are correct, removing FIXMEs
- 12:06 PM bug #6296 (Resolved): Simple search for common names returns duplicates
- Applied in changeset commit:cdmlib|177a283a6184b5ca5ab3344042317f1f96db3b31.
- 10:41 AM bug #6296: Simple search for common names returns duplicates
- There are at least two other problems. I extended the according service tests. You will find in the commit:cdmlib|cc9...
- 12:06 PM Revision 177a283a (cdmlib): fix #6296: fix the parameter settings in search queries
- 11:43 AM bug #6372 (Closed): NPE when using ShowView - Datasource
- Hallo,
bei der Suche nach der Update-Einstellung habe ich Window-ShowView-Datasource gewählt und u.a. Fehler bekomme... - 11:28 AM Revision 4c7f8868 (taxeditor): ref #5488 Do not abbreviate terms by default
- 10:46 AM bug #6215 (Closed): NPE when opening preferences with no DB connection
- looks fine
- 10:37 AM bug #6371 (New): Data-Refresh problem when exporting consensus file
- Another current problem related to this discussion in #5722 would be the following use case:
1) Open an existing s... - 09:21 AM Revision cc95089b (cdmlib): ref #6296 more tests for findByTaxaAndName
- 09:21 AM Revision 1b6c7edf (cdmlib): fixing createTestData - applying manual additions from xml dataset
- 09:21 AM Revision 6eac8d14 (cdmlib): splitting TaxonService search tests for freetext and standard search - all enabled test cases are successful by now
- 09:21 AM Revision 083968cb (cdmlib): minor refactoring of TaxonServiceSearchTest
01/21/2017
- 01:45 PM Revision 1e42628a (cdmlib): ref #6369 Add interfaces for TaxonNameBase and NonViralName
- 12:28 PM task #6370 (Rejected): Remaining issues to merge all TaxonNameBase subclasses
- do all remaining tasks which are not handled by a subtask ticket yet.
- 12:19 PM task #6362: Remove occurrence of NonViralName in code
- replace with interface were possible
- 11:53 AM task #6362 (Closed): Remove occurrence of NonViralName in code
- in cdmlib, taxeditor, cdmlib-app, vaadin, ...
- 12:16 PM feature request #6369 (Closed): Create interfaces for TaxonName types
- 12:15 PM feature request #6368 (Closed): Merge all TaxonNameBase classes, remove DTYPE, rename table
- 12:09 PM feature request #6367 (Closed): Make NomenclaturalCode an attribute ("type") of TaxonNameBase
- 12:06 PM task #6366 (Closed): Merge cultivar names into TaxonNameBase
- by moving all functionality up, replacing all occurrences of CultivarName in code, adapting cache strategies and writ...
- 12:02 PM bug #6365 (Closed): Merge botanical and zoological names into TaxonNameBase
- by moving all functionality up, replacing all occurrences of BotanicalName and ZoologicalName in code, adapting cache...
- 11:58 AM task #6364 (Closed): Merge viral names and bacterial names into TaxonNameBase
- by moving all functionality up, replacing all occurrences of ViralName in code, adapting cache strategies and writing...
- 11:56 AM feature request #6363 (Closed): Implement validation rules for all names according to their code
- to fulfill the requirements for the parent ticket #6361.
First implement as Level1 rules. Later we may reduce this. - 11:51 AM task #6360 (Resolved): Move NonViralName functionality to TaxonNameBase
- 11:50 AM task #6360 (New): Move NonViralName functionality to TaxonNameBase
- 11:28 AM task #6360 (Resolved): Move NonViralName functionality to TaxonNameBase
- Applied in changeset commit:cdmlib|7d8c96134bda3c11d053df2e8e5d03f32a500ee3.
- 11:11 AM task #6360 (Closed): Move NonViralName functionality to TaxonNameBase
- To prepare merging of NonViralName and TaxonNameBase
- 11:49 AM feature request #6361 (Closed): [MASTER] Merge all TaxonName classes into 1 class
- This gives more flexibility to change name types and reduces class casting overheads and exceptions. At the same time...
- 11:28 AM Revision 7d8c9613 (cdmlib): fix #6360 moved all NonViralName functionality to TaxonNameBase
01/20/2017
- 08:01 PM Revision 0a706e80 (cdm-dataportal): solving scrollTo problems in taxontree
- 05:07 PM task #2501 (Closed): Remove redundant SDD import class
- 05:06 PM task #2501 (Resolved): Remove redundant SDD import class
- Applied in changeset commit:cdmlib|6a12debb17f56a4b440d71f3f2ce06ad56bb8945.
- 05:06 PM Revision 6a12debb (cdmlib): fix #2501 remove redundant SDD import class
- 05:04 PM Revision 69222e4e (cdmlib): minor
- 02:32 PM bug #6299: Error when deleting reference in bulk editor
- please have a look if it works now as expected
- 02:30 PM bug #6359 (Closed): Remaining issues secundum for subtrees
- Open issue(s):
* fill UpdateResult correctly => fixed, but preliminary changed due to #9627
* ~~add progress moni... - 02:28 PM bug #6358 (New): feature block ids must not be language dependant
- The feature block ids are build using the label of the according feature type term. When terms are translated the id ...
- 02:27 PM feature request #4246 (Closed): Allow inserting a new node at the beginning or somewhere else in the Polytomous Key tree
- moved the two possiblities of add a node into one menu item
- 02:26 PM bug #6283 (Closed): Exceptions when editing polytomous key
- seems to be fine
- 02:26 PM feature request #4766 (Closed): Repair Methods for the cdm instance
- 01:31 PM feature request #4766 (Feedback): Repair Methods for the cdm instance
- This works fine and is a very nice feature.
Some minor issues:
* Is there a reason why you have implemented the... - 02:25 PM feature request #6357 (New): Repair methods improvement
- follow up issues to #4766
AM:
Is there a reason why you have implemented the CacheUpdater only for 3 classes an... - 02:16 PM bug #6244 (Closed): Sortindex problems in complex operations like swap synonym and accepted and others
- As this is lot of work to test but we did not get any complaints anymore I close without final testing. Also we do ha...
- 02:08 PM bug #6356 (Closed): taxontree sort order as in editor
- The classification browser (taxontree) should be using the same sort order as the taxon navigator in the editor.
... - 02:08 PM bug #6355: Improve message if server is down
- This is NOT a duplicate for related tickets like #6209 but a separate issue.
- 01:53 PM bug #6355 (Duplicate): Improve message if server is down
- If the remote server is down/not started one gets a very long message (see attachement).
The message should be sim... - 02:07 PM feature request #5839: Improve error message when server can't be reached
- Can we close this ticket? If it is a pure duplicate we should (and remove target version).
- 02:06 PM feature request #5839: Improve error message when server can't be reached
- Andreas Müller wrote:
> I don't remember how to invoke this message in the moment. But I have seen it recently and I... - 02:03 PM feature request #5839 (New): Improve error message when server can't be reached
- 02:00 PM feature request #5839 (Closed): Improve error message when server can't be reached
- I don't remember how to invoke this message in the moment. But I have seen it recently and I think we can close this ...
- 02:00 PM bug #6209 (Closed): NPE in DatasourceView
- I don't remember how to invoke this message in the moment. But I have seen it recently and I think we can close this ...
- 01:46 PM Revision 088873e9 (cdmlib): ref #6354 additinonal test for non phrase queries
- 01:40 PM bug #6354 (Resolved): Advanced search: non phrase search with wildcard broken
- Applied in changeset commit:cdmlib|d93004c1d8290a60779c3731a33ba3c46b062ec9.
- 01:34 PM bug #6354 (Closed): Advanced search: non phrase search with wildcard broken
- Example search string: `Abi*`
this is a regression introduced by #4223 - 01:40 PM Revision d93004c1 (cdmlib): fix #6354 non phrase search with wildcard using the standart QueryParser
- 01:29 PM bug #6353 (New): Create progress monitors for imports and other long running tasks
- ... like CacheUpdater or sortindex updater
- 01:16 PM Revision fde0f33a (taxeditor): LibrAlign dependency version updated.
- 01:02 PM bug #6296 (In Progress): Simple search for common names returns duplicates
- bugs are fixed and tests are added
- 01:01 PM bug #6296 (Resolved): Simple search for common names returns duplicates
- Applied in changeset commit:cdmlib|c4f7a205397788e29a5bb8a00efc87eb41322cab.
- 11:14 AM bug #6296: Simple search for common names returns duplicates
- Another broken search request:
http://api.cybertaxonomy.org/flora_cuba/portal/taxon/find.json?doTaxaByCommonNames=... - 01:01 PM Revision c4f7a205 (cdmlib): fix #6296: fix problems for simple search
- 11:58 AM bug #6274 (Closed): add update of childrenCount cache in repair method
- works fine
- 11:47 AM feature request #6352 (Duplicate): Add Transmission Engine trigger to Admin menu
- From the Admin menu we can now trigger sortindex refresh and cache update.
It would be nice to have a functionalit... - 11:01 AM bug #2939 (In Progress): ehcache diskStore conflict?
- 10:59 AM bug #2939: ehcache diskStore conflict?
- latest location of the according documentation: http://www.ehcache.org/generated/2.10.3/html/ehc-all/#page/Ehcache_Do...
- 10:51 AM feature request #4490 (Resolved): Make the label of the taxon page tabs customizable for portal admins
- The menu cache is now refreshed automatically.
- 10:51 AM Revision 93115722 (cdm-dataportal): ref #4490 automatic menu cache refresh after tab label changes
- 10:47 AM task #6158 (Feedback): Update EDIT documentation from svn to git
- At most places it is updated. I found some additional issues:
* dataportal: link to SourceRepository is broken
* ... - 10:39 AM Revision 69d02d97 (taxeditor): check for id==0 before try to delete the media
- 10:28 AM feature request #3465 (Closed): Function to copy secundum reference of a given taxon node to all it's children
- looks fine
- 10:13 AM Revision 0fc610dc (cdmlib): add test for different search combinations
- 09:24 AM Revision 7304d345 (cdmlib): fixed copy paste error for common name search
01/19/2017
- 11:23 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
- Andreas Müller wrote:
> ... Also "Other" is not in the expected order.
This is still an open issue, see descripti... - 11:00 PM feature request #4490 (Feedback): Make the label of the taxon page tabs customizable for portal admins
- I switched it on for Campanula and Mexico Rubiaceae.
Worked for Rubiaceae after a couple of refreshs. For Campanul... - 06:04 PM bug #6349 (Resolved): Fix media description handling
- Applied in changeset commit:cdm-dataportal|09e628ea8e2c8c2dac8e2b9d6e7d532b1974e020.
- 04:29 PM bug #6349 (Closed): Fix media description handling
- Since version 4.5 Media.description is shown in image galleries and on media pages.
Problem: a separator is missing ... - 06:04 PM Revision 95733a84 (cdm-dataportal): Merge tag '4.5.1' into develop
- hot-fix release 4.5.1
- 06:04 PM Revision 19994453 (cdm-dataportal): Merge branch 'hotfix/4.5.1'
- 06:03 PM Revision 09e628ea (cdm-dataportal): fix #6349 media description separate from title
- 05:53 PM Revision 67a5cafa (cdm-dataportal): ref #4223 dynamically added phrase search parentheses must not be stored in the SESSION
- 05:49 PM Revision 38753115 (cdm-dataportal): classification search filter was no longer stored in the session
- 05:30 PM bug #6248 (Closed): allow machine clients to access /manage/* OAuth2 protected web services
- This perfectly works, the `managing-users.properties` are all edited so that they have an according user.
- 05:28 PM feature request #6351 (Closed): jenkins cdmserver-index-job.groovy supports http basic authentication
- the [cdmserver-index-job.groovy](http://160.45.63.176/jenkins/scriptler/editScript?id=cdmserver-index-job.groovy) nee...
- 04:55 PM bug #6259 (Closed): Media page problems with multiple media representations
- Seems to be fixed. Maybe we can improve the layout one day.
- 04:51 PM bug #6350 (New): Advanced search areas show empty brackets if idInVocabulary is not given
- e.g. for Salvador areas
- 04:49 PM bug #6260 (Closed): media page: rights stored in the cdm are not displayed
- fixed
- 04:48 PM feature request #6301 (Closed): Display of sources for images
- Given that there is the follow up ticket this ticket can be closed.
- 04:12 PM feature request #6288 (Closed): harmonize CommonName feature block elements
- 04:07 PM bug #2957 (Closed): running maven site:site for Taxonomic Editor fails
- 04:01 PM feature request #6278 (Closed): add sec reference as class attribute to all taxon markup
- 03:47 PM bug #4223 (Closed): Advanced search returns unexpected results
- 03:46 PM bug #6323 (Closed): LIE during request to name_catalogue/taxon.json
- 03:43 PM bug #6317 (Closed): LIE during request to portal/taxon/find.json
- 03:42 PM bug #6268 (Closed): descriptions missing in media service responses
- 03:42 PM bug #6261 (Closed): NPE while processing /portal/media/{uuid}/sources in BaseController
- 03:39 PM feature request #6249 (Closed): better logging strategy
- 03:33 PM bug #6227 (Closed): LIE during request to derivedUnitFacade/{uuid}/collectingareas
- 03:29 PM bug #4377 (Closed): LazyInitializationException (LIE) related to Team.teamMembers when calling portal/taxon.json
- 03:28 PM bug #6296 (In Progress): Simple search for common names returns duplicates
- This works now in general but searching only for common names causes an exception:
http://api.cybertaxonomy.org/sa... - 02:16 PM bug #6186 (Worksforme): Drupal nodes are created even if Create drupal nodes is off
- 01:37 PM bug #6342 (Closed): Exception when searching for '?' in TaxonNodeSelectionDialog
- works fine now
- 10:35 AM bug #6342 (Resolved): Exception when searching for '?' in TaxonNodeSelectionDialog
- Applied in changeset commit:cdmlib|3d654cd328d3f29666636bf5fec391629be47123.
- 12:57 PM bug #6347 (Closed): Improve layout for navigator sorttype selection
- In the preferences for taxon navigator we have sorting as one issue.
We should try to group this with a header "So... - 12:19 PM Revision 8cd1a7e1 (cdm-server): Merge branch 'release/4.5.0' into develop
- 12:18 PM Revision c6f5d3e2 (cdm-server): updating poms for branch'release/4.5.0' with non-snapshot versions
- 12:18 PM Revision e8935d59 (cdm-webapp): Merge branch 'release/4.5.0' into develop
- 12:17 PM Revision f62bfa60 (cdm-webapp): updating poms for branch'release/4.5.0' with non-snapshot versions
- 12:17 PM Revision 351d7aab (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.5.0
- 12:17 PM Revision 20bb34f8 (cdm-vaadin): Merge branch 'release/4.5.0' into develop
- 12:15 PM Revision 17a27847 (cdm-vaadin): updating poms for branch'release/4.5.0' with non-snapshot versions
- 12:15 PM Revision 61cb444a (cdm-vaadin): jenkins bumping cdmlib.version to 4.5.0
- 12:15 PM Revision 33a01a85 (cdm-dataportal): Merge branch 'release/4.5.0' into develop
- 12:15 PM Revision 1722f82f (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
- 12:15 PM Revision af7ae5e8 (cdm-dataportal): updating poms for branch'release/4.5.0' with non-snapshot versions
- 12:14 PM Revision 08d303c3 (cdm-dataportal): release-preparation: production level css
- 12:14 PM Revision a338301d (taxeditor): Merge branch 'release/4.5.0' into develop
- 12:14 PM Revision d06f9823 (taxeditor): Merge branch 'release/4.5.0'
- 12:13 PM Revision 264ec9d2 (cdmlib): Updating develop poms back to pre merge state
- 12:13 PM Revision 50d31712 (cdmlib): Merge branch 'master' into develop
- 12:13 PM Revision 0784de46 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 12:13 PM Revision bd4fc52b (cdmlib): Merge branch 'release/4.5.0'
- 11:56 AM Revision 3b6b3a2e (cdmlib): updating poms for branch'release/4.5.0' with non-snapshot versions
- 11:54 AM Revision 21e2b938 (taxeditor): Updated version in pom / project files to taxeditor version : 4.6.0-SNAPSHOT and cdmlib version : 4.6.0-SNAPSHOT
- 11:54 AM Revision 63b6ac4b (taxeditor): Updated version in pom / project files to taxeditor version : 4.5.0 and cdmlib version : 4.5.0
- 11:46 AM Revision 74c7e1e5 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.5.0-SNAPSHOT
- 11:46 AM Revision de244005 (cdm-webapp): updating poms for 4.6.0-SNAPSHOT development
- 11:46 AM Revision 20b625d5 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.6.0-SNAPSHOT
- 11:45 AM Revision 66ab25b8 (cdm-dataportal): updating poms for 4.6.0-SNAPSHOT development
- 11:45 AM Revision be4eda17 (cdm-vaadin): jenkins bumping cdmlib.version to 4.5.0-SNAPSHOT
- 11:45 AM Revision 4683974a (cdm-vaadin): updating poms for 4.6.0-SNAPSHOT development
- 11:45 AM Revision ee63a3b0 (cdm-server): updating poms for 4.6.0-SNAPSHOT development
- 11:44 AM Revision 372f5add (cdm-vaadin): jenkins bumping cdmlib.version to 4.6.0-SNAPSHOT
- 11:44 AM Revision 893ee34c (taxeditor): missed to add some selection dialogs with last commit
- 11:42 AM Revision 82532813 (cdmlib): updating poms for 4.6.0-SNAPSHOT development
- 10:44 AM feature request #6346 (New): Implement filtering and sorting for specimen table in dataportal
- 10:39 AM Revision 235fd63d (taxeditor): fix #6342: fix exception when using ? in selection dialog
- 10:35 AM Revision 3d654cd3 (cdmlib): fix #6342: fix exception for ? in selection dialog
- 10:26 AM bug #6345 (New): Zooming with mouse wheel resets manually adjusted size of areas in AlignmentEditor
- 1. Change the size of the different areas (single read, consensus, multi-read)
1. Zoom with CTRL+mouse wheel
1. Siz... - 08:46 AM feature request #6344 (New): Restrict UI for editing molecular data
- After a testing session with Norbert we decided to use a very restrictive UI to avoid any synchronization problems. T...
- 08:28 AM bug #4821: Changing order of terms not possible
- Yes, please review.
01/18/2017
- 11:47 PM bug #6343 (In Progress): TermVocabularies of OrderedTerms must be OrderedVocabularies
- 11:46 PM bug #6343 (In Progress): TermVocabularies of OrderedTerms must be OrderedVocabularies
- Updatescript for TermVocabularies of OrderedTerms which are not OrderedVocabularies.
See also https://dev.e-taxono... - 11:43 PM bug #4821: Changing order of terms not possible
- Should I review or are there still open aspects?
- 11:39 PM feature request #5474: TermEditor menu should be more structured
- Please also add a separator above "Others"
- 11:38 PM feature request #5474 (Feedback): TermEditor menu should be more structured
- Please use i18n (translations for term types themselves will also be offered soon, there is a ticket). Be aware that ...
- 11:35 PM Revision 3f70c8a3 (taxeditor): ref #5474 other -> others
- 11:29 PM feature request #6314: CDM light (csv) export implemented
- Katja: Ich habe diese und die vorherige Version auch nochmal unter Y:\BDI\EDIT-Plattform\_Latest Versions\Output Mode...
- 11:20 PM Revision e5dfd829 (cdmlib-apps): ref #5974 remove synonymRelationships from BfN Import init strategy
- 11:03 PM bug #6042: Campanula portal TODOS
- Can you please adapt (or remove) target version. 4.5 does not seem to be correct.
- 06:14 PM bug #6042 (Closed): Campanula portal TODOS
- 06:15 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
- Currently we have a warning if more than 500(?) objects are going to be loaded into an bulk editor. Instead we should...
- 05:59 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
- Andreas Müller wrote:
> Have you checked if we can reuse / combine the Comparator developed for #3185?
The other co... - 05:54 PM Revision 1b0d0ec1 (taxeditor): ref #5714 Fix ordering of source types
- - order by key instead of message
- always have either taxonomic or media source as first and the other
as second - 04:23 PM bug #6283: Exceptions when editing polytomous key
- I am not really sure what to test here because I do not know how to reproduce the problem. I clicked around and added...
- 04:23 PM Revision 6ed48b2e (taxeditor): ref #6283 Fixed potential NPE for EntitySelectionElement
- - refactored constructors to always initialise the clazz variable
- 04:21 PM bug #6342 (Closed): Exception when searching for '?' in TaxonNodeSelectionDialog
- 1. In Navigator right-click on a taxon
1. Choose "Move Taxon (with children)"
1. Search for all taxon nodes with '?... - 02:49 PM Revision 9a3af936 (taxeditor): fix #5496 Refactor preference pages to use TermType
- 11:08 AM Revision cbb4cfac (taxeditor): TIC dependecy version updated.
- 09:45 AM feature request #5365 (Feedback): Add delete configurator to Media View image gallery
- When trying to delete an unsaved, recently created image from an image gallery I get an NPE
~~~
login : admin
ed... - 09:39 AM bug #6334 (Closed): Deleting unsaved TaxonDescription does not work
- works fine
- 09:32 AM bug #6333 (Resolved): Add existing media to a taxon description is not persisted
- I removed the option to change an existing media element in the DetailsView. Instead we should add the option to add ...
- 09:28 AM Revision d89cdff1 (taxeditor): ref #6333 Remove framework for exchanging an element in the details view
- - This is against the concept of the DetailsView just showing an
element which you can edit. Changing the element req... - 09:16 AM Revision f5b66699 (taxeditor): ref #6333 Add generic support for entity collection sections to allow
- adding existing entities
- this is done by two abstract methods allowAddExisting() and
addExisting() - 12:32 AM feature request #5922 (Closed): Change order in supplemental data view
- 12:27 AM bug #6341 (New): Show botanical nomenclatural status types not for zoological names
- This is a bit more difficult than #5488 as we first need to figure out which botanical status are purely botanical an...
- 12:23 AM bug #6340 (Closed): Update script for nomenclatural status types
- Until #5488 was solved it was possible to add a zoological nom status to a botanical name in TaxEditor.
Especially f... - 12:08 AM bug #6307 (Closed): Logfile/exception dialog should show connected datasource
- Looks fine now
01/17/2017
- 11:55 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
- Have you checked if we can reuse / combine the Comparator developed for #3185?
- 11:52 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
- ... Also "Other" is not in the expected order.
- 11:51 PM feature request #5714 (Feedback): In Original Source Type dropdown show Primary Taxonomic Source first
- Only Primary Taxonomic Source is on top, but Primary Media Source is not yet second and also no alphabetic ordering o...
- 11:42 PM Revision a66eea38 (taxeditor): ref #6307 remove cdmserver/ from contextpath
- 11:29 PM Revision 01840d49 (taxeditor): ref #5922 Change order in supplemental data view (cont.)
- 10:56 PM Revision 4e54c1d9 (cdmlib-apps): Add some Spanish representations to Salvador terms
- 05:48 PM Revision 885af082 (cdmlib): ref #6339 reducing code duplication
- 05:43 PM Revision 733faa22 (cdmlib): Initialise sample designation to format keys for IdentifiableEntity
- 05:38 PM bug #6339 (Closed): frontendBaseUrl parameter not longer working in web services
- 05:21 PM bug #6339 (Resolved): frontendBaseUrl parameter not longer working in web services
- Applied in changeset commit:cdmlib|fcfd1e30ae194d17b3be1bae4b5f09dcbb52eaa0.
- 05:19 PM bug #6339 (In Progress): frontendBaseUrl parameter not longer working in web services
- 04:27 PM bug #6339 (Closed): frontendBaseUrl parameter not longer working in web services
- see #6338 General notes
- 05:21 PM Revision fcfd1e30 (cdmlib): fix #6339 fixing missing respect to the frontendBaseUrl
- 04:49 PM Revision 1b7ce0af (cdmlib): ref #6248 also protecting /**description/accumulateDistributions
- 04:36 PM Revision 61d32ca1 (cdmlib): ref #6249 prefixig all logappender with instance (bean) name for EnhancedPatternLayout
- 03:28 PM feature request #6337 (Rejected): simple web ui to trigger the transmission engine distribution
- in case #6352 is implemented this issue becomes obsolete
- 02:50 PM bug #6209 (Resolved): NPE in DatasourceView
- 01:00 PM bug #6209: NPE in DatasourceView
- The message is changed and a new ticket for the email of the admin is created (#6335).
- 02:07 PM bug #6336 (Closed): NPE when deleting recently created media
- 1. Create new image gallery for a taxon
1. Directly delete the image -> NPE
~~~
!ENTRY eu.etaxonomy.taxeditor.ed... - 01:29 PM bug #6333 (In Progress): Add existing media to a taxon description is not persisted
- 10:28 AM bug #6333 (Closed): Add existing media to a taxon description is not persisted
- When adding an existing media to a taxon the description shows up correctly, but after changing the view and come bac...
- 01:00 PM feature request #6335 (New): Providing the admin email for each server installation
- For some issues the edit support is not responsible for the error messages but the server admin of an instance. There...
- 12:51 PM feature request #4766 (Resolved): Repair Methods for the cdm instance
- I added the sortIndex Updater and the cache updater. Please have a look, if everything works or any suggestions for i...
- 12:44 PM bug #6283 (Resolved): Exceptions when editing polytomous key
- 12:44 PM bug #6283: Exceptions when editing polytomous key
- I test it again and it works now. Please test, if there are NPE when editing the key.
- 11:57 AM Revision 9d28ffb6 (taxeditor): minor
- 11:56 AM bug #6334 (Resolved): Deleting unsaved TaxonDescription does not work
- Applied in changeset commit:taxeditor|1f9fcd90f5cd65d1d848ddeb93531e55dc6b100f.
- 11:03 AM bug #6334 (Closed): Deleting unsaved TaxonDescription does not work
- 1. Create new TaxonDescription in FactualData view
1. Delete that TaxonDescription
1. TaxonDescription is still the... - 11:56 AM Revision 1f9fcd90 (taxeditor): fix #6334: unsaved description needs to be removed from the taxon
- 11:52 AM Revision 40de894f (taxeditor): add missing changes
- 11:46 AM Revision 5291be06 (taxeditor): minor
- 11:25 AM bug #6248 (Resolved): allow machine clients to access /manage/* OAuth2 protected web services
- Applied in changeset commit:cdmlib|c05f3fc567c3839ded9d89c6c0f81834fe11e1d2.
- 11:09 AM bug #6248: allow machine clients to access /manage/* OAuth2 protected web services
- oauth2 with grant type 'client' is not really needed. It would require that the client can authenticate with username...
- 11:25 AM Revision c05f3fc5 (cdmlib): fix #6248 implementing global management users for machine clients
- 11:12 AM bug #6281: delete synonym with annotations throws exception
- same problem, when the synonym has original sources.
~~~ text
login : W.Greuter
editor version : 4.4.1
server :... - 11:10 AM Revision f70049c0 (cdmlib): minor code cleaning
- 11:00 AM feature request #5365 (Resolved): Add delete configurator to Media View image gallery
- Applied in changeset commit:taxeditor|d747b2b97eb8df327a6096e37a9b644cbd950295.
- 11:00 AM Revision d747b2b9 (taxeditor): fix #5365: add delete configuration to media view
01/16/2017
- 12:45 PM Revision a2b0aaba (cdmlib-apps): Merge branch 'master' into noChecklistClone
- 12:40 PM Revision 2c298347 (cdmlib-apps): ref #5448 Add new rank "forme"
- - did some refactoring and advanced logging
- 11:19 AM Revision e7788357 (cdmlib): removing unused and misleading method
- 11:14 AM feature request #6332 (New): cdm-dataportal as oauth2 client of cdm-remote instances
- The drupal modules providing oauth2 client functionality:
* [oauth2_client](https://www.drupal.org/project/oauth2_... - 10:45 AM Revision b7d5770a (cdmlib): ref #6118 enabling missing httpbasic authentication for oauth secured endpoints
- 10:08 AM feature request #5365: Add delete configurator to Media View image gallery
- Sorry, I added the delete configuration only to the bulk editor. Will add it to the media galery as well,
- 09:17 AM Revision 981251f1 (cdmlib): cleaning up CdmUtils
- - removing usused method
- reducing code duplication
01/14/2017
01/13/2017
- 05:19 PM bug #6331 (New): Inserting gaps in the AlignmentEditor using the space key does not work anymore
- See https://secure.bioinfweb.info/Bugs/Bugzilla/show_bug.cgi?id=153
Workaround: Use the '-' key instead. - 04:50 PM Revision ae1b83c4 (taxeditor): Removed double reference to TIC in molecular.lib.
- 04:35 PM Revision fff59041 (taxeditor): remove unused bin.include
- 04:02 PM Revision 645c77a1 (taxeditor): Saving files before refreshing line endings
- 03:33 PM Revision 1c69b0d0 (taxeditor): Merge branch 'develop' into LibrAlign
- 03:11 PM Revision 64f25b56 (taxeditor): Alternative versions for build.properties added. Current state set to "dependencies from JARs". (Can be merged to trunk in this state.)
- 02:05 PM feature request #5365: Add delete configurator to Media View image gallery
- There is no popup at all when I delete an image from an image gallery. I tried it with an image attached to a taxon i...
- 01:51 PM Revision 6de63659 (taxeditor): ref #5495 always empty details view when there is no active editor
- providing a selection
- 01:33 PM Revision e54b6c76 (taxeditor): pom.xml and MANIFEST.MF updated in molecular.lib.
- 01:27 PM bug #2957 (Resolved): running maven site:site for Taxonomic Editor fails
- 01:23 PM bug #2957: running maven site:site for Taxonomic Editor fails
- Andreas Kohlbecker wrote:
> As far as i can see there is no other information from subprojects that needs to be incl... - 11:19 AM bug #2957: running maven site:site for Taxonomic Editor fails
- As far as i can see there is no other information from subprojects that needs to be included into the site doc.
Add... - 10:28 AM bug #2957 (Feedback): running maven site:site for Taxonomic Editor fails
- On my local machine I tried running `mvn site:site` which at first crashed. Then I tried `mvn install` first and then...
- 01:15 PM feature request #5055 (Closed): Integrate Luna installation instruction into standard installation instructions
- This has been resolved by fixing #6158
- 12:08 PM Revision ef1673ea (taxeditor): Adjustments to project structure changes in JPhyloIO.
- 12:07 PM task #6158 (Resolved): Update EDIT documentation from svn to git
- 10:38 AM task #6158 (Feedback): Update EDIT documentation from svn to git
- 10:37 AM task #6158 (Resolved): Update EDIT documentation from svn to git
- Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > I updated the documentation of taxeditor and cdmlib (change... - 10:26 AM task #6158 (Feedback): Update EDIT documentation from svn to git
- 09:46 AM task #6158: Update EDIT documentation from svn to git
- Patrick Plitzner wrote:
> I updated the documentation of taxeditor and cdmlib (changed only the repository informati... - 09:29 AM task #6158: Update EDIT documentation from svn to git
- I updated the documentation of taxeditor and cdmlib (changed only the repository information from svn to git here).
... - 09:21 AM task #6158 (Resolved): Update EDIT documentation from svn to git
- Applied in changeset commit:taxeditor|8e2a3b6327166e1cd821a6dbeb9df2e2a27f4988.
- 11:18 AM bug #4223: Advanced search returns unexpected results
- Works for me in the Corvids test portal now.
- 11:10 AM bug #4223: Advanced search returns unexpected results
- this issue is fully solved now, please do the review asap.
- 10:25 AM bug #4223 (Resolved): Advanced search returns unexpected results
- Applied in changeset commit:cdmlib|5c69d02f232481e02f850bfd10404566a8373e5b.
- 11:08 AM Revision 7d42c393 (cdm-dataportal): solving probelms with search parameters not being remembered
- 10:49 AM Revision b3d49e6e (cdm-dataportal): ref #4223 lucene based taxon search always as phrase search
- 10:48 AM Revision 103a1463 (cdm-dataportal): typos and fixing messages
- 10:25 AM Revision 5c69d02f (cdmlib): fix #4223 using the ComplexPhraseQuery for phrase searches with wildcards
- 09:26 AM Revision 8b607fc9 (cdmlib): ref #6158 Update source code repository from svn to git
- 09:25 AM Revision a2cfd9b1 (taxeditor): ref #6158 Add missing git clone command to doc
- 09:21 AM Revision 8e2a3b63 (taxeditor): fix #6158 updated taxeditor installation documentation
01/12/2017
- 11:59 PM feature request #5922: Change order in supplemental data view
- Extensions still could be moved down (taxeditor|55409937). Markers we can leave were they are for now as this is more...
- 11:57 PM Revision 55409937 (taxeditor): fix #5922 Move extensions section down
- 11:56 PM Revision 79be504a (taxeditor): cleanup
- 11:49 PM bug #5698 (Closed): Ampersand (&) is not shown in labels for NameRelationships in details view
- seems to work
- 10:31 PM bug #4223: Advanced search returns unexpected results
- Andreas Kohlbecker wrote:
> Here we are facing two problems:
>
> 1. The portal does not allow to do a phrase sear... - 06:50 PM bug #4223: Advanced search returns unexpected results
- The `ComplexPhraseQueryParser` is still available in the our current lucene version, so we could give this one a try.
- 06:27 PM bug #4223: Advanced search returns unexpected results
- Here we are facing two problems:
1. The portal does not allow to do a phrase search with a query string like `"Gar... - 10:28 PM Revision 8bb9f541 (cdm-dataportal): ref #4223 fixing request uri for accepted taxa
- solves problem 1) in issue
- 05:58 PM bug #6227 (Resolved): LIE during request to derivedUnitFacade/{uuid}/collectingareas
- Applied in changeset commit:cdmlib|5f3efd0eb42e522ee613872715c821753a1d6004.
- 05:58 PM Revision 5f3efd0e (cdmlib): fix #6227 solvig LIE in DerivedUnitFacade webservice
- 05:44 PM feature request #6301: Display of sources for images
- please do the review
- 01:50 PM feature request #6301 (Resolved): Display of sources for images
- Applied in changeset commit:cdm-dataportal|0c2b9b9d85abf12805482981dde310fa1b6c1b45.
- 05:36 PM Revision a1493182 (cdm-dataportal): ref #6301 sources as inline elements on media page - bugfix
- 05:18 PM feature request #6327: Providing the admin email for each server instance somehow
- Andreas Müller wrote:
> Do we have an idea who the admin actually is?
> Is it the user "admin" with email stored (o... - 04:53 PM feature request #6327: Providing the admin email for each server instance somehow
- Do we have an idea who the admin actually is?
Is it the user "admin" with email stored (or not) in the CDM?
Or is... - 03:30 PM feature request #6327 (Duplicate): Providing the admin email for each server instance somehow
- sometimes it is useful to give contact informations of the server admin to the user, therefore we need this informati...
- 05:15 PM bug #6329: improve display of media sources and annotations
- Andreas Müller wrote:
> I don't understand why the captions are relevant here sources and annotations are not depend... - 04:49 PM bug #6329: improve display of media sources and annotations
- I don't understand why the captions are relevant here sources and annotations are not dependent on the captions and t...
- 04:29 PM bug #6329: improve display of media sources and annotations
- The sources and annotations are displayed differently in the image gallery and media page.
#### A. Gallery
1. S... - 04:21 PM bug #6329 (New): improve display of media sources and annotations
- follow up of #6301
The sources and annotations are displayed differently in the image gallery and media page.
#... - 04:50 PM feature request #5671 (Resolved): Name selection should not allow self referencing name relationships
- Applied in changeset commit:taxeditor|c1c83a38d07bdc4286ce7abb8b30789d0c32e637.
- 04:50 PM Revision c1c83a38 (taxeditor): fix #5671: add filter element for selection dialog
- 04:49 PM Revision f79d32d6 (cdm-dataportal): ref #6301 sources as inline elements on media page
- 04:44 PM feature request #5365 (Resolved): Add delete configurator to Media View image gallery
- 02:46 PM feature request #5365: Add delete configurator to Media View image gallery
- This works now. Please have a look. I have to find the changeset...
- 04:28 PM bug #6330 (Closed): Defined sort order for Mediarepresentations
- If multiple MediaRepresentations are available for one Media the order is arbitrary as it has set semantics.
This ... - 04:12 PM bug #6328 (New): Warn about available text in other languages if multi-language support is disabled
- If multi language support is disabled a Media.description is not shown if it is defined in another language than the ...
- 01:57 PM Revision 028c6d17 (cdm-dataportal): ref #6301 removing stray characters
- 01:52 PM Revision 2b7ff891 (cdmlib): ref #6301 extending media objects returned by MediaListController
- - adding sources
- 01:50 PM Revision 0c2b9b9d (cdm-dataportal): fix #6301 implementing display of sources and annotations for media
- 11:28 AM bug #6326: Login from taxeditor not possible after logging out of vaadin distribution editor
- Andreas Kohlbecker wrote:
> A problem in the session handling? Maybe solved when #5285 is completed?
>
> Are ther... - 10:50 AM bug #6326: Login from taxeditor not possible after logging out of vaadin distribution editor
- A problem in the session handling? Maybe solved when #5285 is completed?
Are there any observable abnormality in t... - 10:01 AM bug #6326 (Worksforme): Login from taxeditor not possible after logging out of vaadin distribution editor
- I tested this with flora cuba on the test server (http://test.e-taxonomy.eu/cdmserver/flora_cuba/app/distribution)
...
01/11/2017
- 04:17 PM Revision 2a3b0c8e (cdm-dataportal): turning useless media related theme-functions into compose or plain markup functions - step 2:
- moving functions to includes file
- 04:14 PM Revision 91b4a452 (cdm-dataportal): missing deafult in media related compose function fixed
- 03:54 PM Revision a9815578 (cdm-dataportal): turning useless media related theme-functions into compose or plain markup functions
- 02:24 PM bug #6325 (New): Handling of specimen imported via biocase with missing nomenclatural code
- for ABCD import the parsing and assignement to an existing name works fine if the identification contains the nomenc...
- 02:14 PM bug #4377 (Resolved): LazyInitializationException (LIE) related to Team.teamMembers when calling portal/taxon.json
- Applied in changeset commit:cdmlib|8e6fba800484afd4d9570c39f630b47e49579624.
- 02:14 PM Revision 8e6fba80 (cdmlib): fix #4377 adding missing bean init path missing after ref #5974
- 01:50 PM feature request #6076: Specimen biocase search should work on observations
- The specimen search works now on all types of specimen. Find the commit.
- 12:44 PM bug #6323 (Resolved): LIE during request to name_catalogue/taxon.json
- Applied in changeset commit:cdmlib|04a88dbc1f00111e4cb3dfee0b1d940dffdb5bf6.
- 12:09 PM bug #6323: LIE during request to name_catalogue/taxon.json
- This bug has been caused by the changes applied through #5974
- 09:45 AM bug #6323 (Closed): LIE during request to name_catalogue/taxon.json
http://api.cybertaxonomy.org/col/name_catalogue/taxon.json?taxonUuid=19338fc3-dbd5-4bda-8cb3-8da76151f8c4
~~~
C...- 12:44 PM Revision 2440f0fe (cdmlib): ref #6324 adding FIXME comment
- 12:44 PM Revision 04a88dbc (cdmlib): fix #6323 adding missing bean init path missing after ref #5974
- 12:12 PM bug #6324 (Closed): fix dozer mapping after removal of synonym relations and after using TaxonNode
- the the dozer mapping file `/cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/tdwg/mappings-deep.xml` a p...
- 11:43 AM bug #6151: implement pager for search service
- Hi Andreas,
We have now implemented this, and (on top) added a REST service.
http://www.eu-nomen.eu/portal/webser... - 08:12 AM Revision 2e82a602 (cdm-dataportal): ref #6320 Add page size to settings for compressed specimen table
01/10/2017
- 04:45 PM Revision a5a9fcde (taxeditor): ref #6320 show pherogram title cache in single read label
- 04:44 PM Revision fe4c0713 (cdmlib): ref #6320 Add pherogram title cache to format keys
- 04:25 PM Revision 799a6449 (taxeditor): Fix icon for media derivative
- 04:19 PM bug #6322 (Closed): In the specimen editor showing the warning for long loading times already has a long loading time
- I tried this on the campanula test DB when searching for 'Ar*'
- 03:06 PM bug #6307 (Resolved): Logfile/exception dialog should show connected datasource
- Applied in changeset commit:taxeditor|5b6653af71b7c1d3ae3998057cf3fa7502a76a58.
- 01:46 PM bug #6307 (In Progress): Logfile/exception dialog should show connected datasource
- 03:06 PM Revision 5b6653af (taxeditor): fix #6307 Show contextPath in error log
- 03:06 PM Revision 4abd9b52 (taxeditor): Removed unused import
- 02:45 PM Revision c005189c (cdmlib-apps): Adapt English quotation marks
- 02:44 PM Revision aaea23f9 (cdmlib): Add new English quotation marks
- 01:58 PM feature request #4246 (Resolved): Allow inserting a new node at the beginning or somewhere else in the Polytomous Key tree
- Applied in changeset commit:taxeditor|40bd7837ec825e5caa98e20ae64592eab98c71c1.
- 01:57 PM Revision 40bd7837 (taxeditor): fix #4246: move insert node and create new key node to one menu item with submenu
- 01:36 PM Revision c964d5e8 (cdm-vaadin): Fix title of distribution settings view
- 01:13 PM feature request #6321 (Closed): Implement parallel loading + progress bar for loading objects into the bulk editor
- 11:52 AM bug #4377: LazyInitializationException (LIE) related to Team.teamMembers when calling portal/taxon.json
- Potentially a duplicate of #6317
- 11:40 AM bug #6319 (New): change background color if changing focus from name editor to another view
- Hallo,
grundsätzlich ist das nicht völlig falsch, da der Fokus dieses Fensters ja weiterhin auf der entsprechenden... - 11:24 AM Revision 823a79dd (cdmlib-apps): ref #6265 remove Description from Salvador taxa
- 11:10 AM Revision 0d3ee32e (cdmlib): cleanup
- 10:33 AM bug #6244: Sortindex problems in complex operations like swap synonym and accepted and others
- This was part of the bugfix release as far as I remember
- 09:42 AM bug #6296 (Resolved): Simple search for common names returns duplicates
- 09:34 AM Revision c2c05353 (cdmlib): some code cleaning
01/09/2017
- 11:11 PM feature request #3465: Function to copy secundum reference of a given taxon node to all it's children
- Applied in changeset commit:cdmlib|06bf3273fe5580bb9201cb85fe829a18885a6942.
- 11:11 PM Revision 06bf3273 (cdmlib): fix #3465 Progressmonitor API and better UpdateResult handling for setSecundumForSubtree
- 06:03 PM bug #6318 (Closed): Truncate TextData in FactualData View
- Walter:
Hallo Andreas,
wir sind jetzt der Sache mit den angeblich verstümmelten Editorial Notes und Notes auf di... - 04:11 PM bug #6317 (Resolved): LIE during request to portal/taxon/find.json
- Applied in changeset commit:cdmlib|79902c85abf9675dbc9838a71327de7a54b53dd4.
- 12:31 PM bug #6317 (Closed): LIE during request to portal/taxon/find.json
http://api.cybertaxonomy.org/salvador/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1...- 04:11 PM Revision 79902c85 (cdmlib): fix #6317 fixing LIE related to inReference author teams
- 03:54 PM Revision 88a2e4be (cdmlib): un-commenting test part
- 03:46 PM Revision d1382189 (cdmlib): ref #6296: minor
- 03:39 PM Revision d841fb5d (cdmlib): ref #6296: minor
- 03:29 PM bug #6296 (In Progress): Simple search for common names returns duplicates
- With the test case mentioned in #6317 an exception is thrown:
~~~
2017-01-09 15:26:32.283:WARN:oejs.ServletHandle... - 03:12 PM bug #6296 (Resolved): Simple search for common names returns duplicates
- Applied in changeset commit:cdmlib|8311a989da231228857d6330f10d14286e93e6fe.
- 02:32 PM bug #6296: Simple search for common names returns duplicates
- The commonNameSearch is now integrated into the taxa and synonym search query.
- 09:34 AM bug #6296: Simple search for common names returns duplicates
- The method in question is
~~~java
Pager<IdentifiableEntity> eu.etaxonomy.cdm.api.service.TaxonServiceImpl.findT... - 03:11 PM Revision 8311a989 (cdmlib): fix #6296: include the common name search into the search query of taxa and synonyms
- 11:36 AM feature request #6316: display source references of media objects in media page
- In the media page the display of sources is missing.
- 11:34 AM feature request #6316 (Closed): display source references of media objects in media page
- * The sources should be an ordinary attribute here, not integrated in any footnote or annotation framework
* Conside... - 11:29 AM Revision 1406bf5c (cdm-dataportal): multiple minor syntax problems
01/07/2017
- 12:20 AM Revision 721d9357 (cdmlib): cleanup
- 12:17 AM feature request #6315 (Closed): Implement setSecundumForSubtree in TaxEditor
- The functionality has been implemented in #3465
It needs to be called via taxon navigator right click menu. A conf... - 12:06 AM feature request #3465 (Resolved): Function to copy secundum reference of a given taxon node to all it's children
- Applied in changeset commit:cdmlib|d97ab2bfb82c496c37bbb0d7f9b45aae078288be.
- 12:03 AM Revision d97ab2bf (cdmlib): fix #3465 implement setSecundumForSubtree
Also available in: Atom