Activity
From 10/06/2019 to 11/04/2019
11/04/2019
- 10:06 PM Revision 14e5960f (cdmlib): cleanup
- 10:06 PM Revision 0668c27e (cdmlib): better exception handling in MethodMapper
- 06:31 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- a single cdmlib-remote-webapp instance started from within the eclipse ide:
* RSS: 1297,05078125 MB
* heap used:... - 06:07 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- timeseries monitoring of the cdm-server running at edit-test with 6 instances:
This diagr... - 06:16 PM bug #8633: version 5.11 can not connect to workshop servers
- As this was only preliminary in 5.11 beta I remove target version
- 06:08 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > One more requirement I forgot to mention before:
> >
> > T... - 03:35 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Andreas Müller wrote:
> One more requirement I forgot to mention before:
>
> The list should show only those code... - 02:54 PM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
- One more requirement I forgot to mention before:
The list should show only those codes which fit to the nomenclatu... - 02:50 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Works!
> >
> > Only some layout issues:
> >
> > * ~~Please a... - 12:48 PM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
- 12:05 PM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Andreas Müller wrote:
> Works!
>
> Only some layout issues:
>
> * ~~Please add identation to label to make cl... - 06:05 PM bug #8626 (Feedback): NullPointerException (NPE) on saving Specimen Editor (list)
- I guess we can close this as Duplicate for #7699 (or as Workforme if you don't think #7699 is correct). Please remov...
- 03:08 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
- I remember that it was possible to reproduce this problem on the day when I wrote this ticket. Today, however, the pr...
- 05:48 PM feature request #8647 (New): Allow selecting named areas, ranks, presence-absence terms from term trees/collections
- It is possible now to create term trees for Named Areas, Presence-Absence-Terms and Ranks (and ofcourse Features).
... - 04:31 PM bug #8610 (Closed): tagged_text_extract_nomstatus() fails handling more than one status
- 04:31 PM bug #8610: tagged_text_extract_nomstatus() fails handling more than one status
- =Labiatae Juss., Gen. Pl.: 110. 1789, nom. cons.2, nom. altern.2
is now being displayed correctly in the data port... - 04:15 PM bug #7143 (Feedback): Finish not enabled when unprotecting titleCache in new Person dialog
- Finish is not enabled when only the title cache is filled with data.
Even after entering the family name it still ... - 04:08 PM bug #8605: ClassCastException in Feature editor when adding new Defined Term
- I extended the ticket descriptions to clarify what I did
- 04:03 PM Revision 4b428921 (cdm-dataportal): ref #8595 Show count for StateData + only show data when state!=null
- 03:58 PM bug #8374: Save genus generated for a species with a different reference
- removed version as this is a duplicate
- 03:44 PM feature request #8226 (Closed): make modifiers for description elements configurable
- Yes, this works now (except for the issue to be solved in #8236, but this is another ticket)
- 10:49 AM feature request #8226 (Resolved): make modifiers for description elements configurable
- now it should work.
- 03:33 PM Revision 879048dd (taxeditor): ref #8642 Change menu oder for tree editors
- 03:33 PM feature request #8572 (Feedback): Rule considered configurable
- Personally I would give even more indentation (see #8572#note-8). But this is up to you.
Generally we can close th... - 01:39 PM feature request #8572 (Resolved): Rule considered configurable
- I think all open issues are fixed.
* sub preference have more indent
* the label for "Secundum enabled..." is ful... - 03:24 PM feature request #8642 (Feedback): Add tree editor for rank, NamedArea and PresenceAbsence
- Generally works. Menu order please like discussed with Feature and Named Area on top, separator, PresenceAbsence, Ran...
- 03:24 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
- Refreshing obviously is working again. Thanks for fixing.
- 02:38 PM bug #8639: Reorder Names in Preferences
- Andreas Kohlbecker wrote:
> I would prefer seeing these entries in alphabetical order.
Alphabetical order is the... - 01:21 PM bug #8639: Reorder Names in Preferences
- I would prefer seeing these entries in alphabetical order.
For me the new suggestion is harder to comprehend than... - 02:02 PM Revision 0b52ae5c (cdmlib): revert changes in abcd import test
- 01:39 PM Revision 064a8014 (taxeditor): ref #8450 Fix initial expansion state when refreshing matrix
- 01:37 PM Revision 2d931a85 (cdmlib): ref #8450 Display StateData.count if present
- 01:36 PM task #8466 (Closed): Delete FeatureTree tables
- 01:22 PM Revision 54c2a6e5 (taxeditor): ref #8572: some more indention for sub preferences
- 01:18 PM Revision 5006c242 (taxeditor): ref #8572: rule considered and code edition enable/disable in preferences
- 12:57 PM Revision 9b17d62b (taxeditor): layout issues in name details view preference
- 12:48 PM Revision 25364108 (taxeditor): ref #8410: add indent to code edition
- 10:57 AM bug #8645: rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
- Also Term Tree is not the really correct label as the import is for importing the whole ontology for structured descr...
- 10:48 AM Revision 6e9bf931 (taxeditor): ref #8226: fix show modifier
- 08:47 AM Revision 29b04663 (cdmlib): minor refactoring
11/03/2019
11/02/2019
- 10:26 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- The diagnosis method described in this article may help analyzing the problem: https://technology.blog.gov.uk/2015/12...
- 05:44 PM bug #8646: Character Details View should provide more information on the structure and property terms
- This could be done
a. by extending the label by this information or
b. by showing an infobox when hovering ove... - 05:37 PM bug #8646 (New): Character Details View should provide more information on the structure and property terms
- It should be possible the get more information on the structure and property term which make up the Character
![]... - 05:27 PM bug #8645 (Closed): rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
- This import function is not a general OWL import.
The information on the nature of the data to be imported must be m...
11/01/2019
- 05:32 PM task #8644 (New): [PESI][FE] Verify FauEu PESI export
- 05:26 PM feature request #8643 (In Progress): [PESI][FE] Adpat new PESI export to FE requirements
- 05:24 PM feature request #8643 (In Progress): [PESI][FE] Adpat new PESI export to FE requirements
- PESI export has changed. FE export still needs to be adapted to these changes
- 05:25 PM Revision 0d988e0a (cdmlib-apps): ref #8643 adapt PesiExportActivatorFE to current state
- 05:10 PM Revision bb4d8757 (cdmlib-apps): cleanup
- 05:05 PM Revision 446b1e61 (cdmlib): ref #8450 Set "count" when aggregating StateData
- 04:45 PM Revision 882e2c02 (cdm-dataportal): ref #8595 Show aggregation description elements on taxon page
- 03:07 PM Revision caacf65b (taxeditor): adapt TaxEditor Test-H2 to model changes v5.11
- 03:06 PM Revision c6865762 (cdm-vaadin): adapt vaadin Test-H2 to model changes v5.11
- 02:55 PM feature request #8642 (Resolved): Add tree editor for rank, NamedArea and PresenceAbsence
- Applied in changeset commit:taxeditor|43fdbc98815ef71a54c68fe96a11ea189355accc.
- 02:52 PM feature request #8642 (Closed): Add tree editor for rank, NamedArea and PresenceAbsence
- 02:53 PM Revision 43fdbc98 (taxeditor): fix #8642 Add tree editor for rank, NamedArea and PresenceAbsence
- 02:43 PM task #8466 (Resolved): Delete FeatureTree tables
- Applied in changeset commit:cdmlib|74b86998eb26eb3fe74b837048f1aa9b1f0b9d3b.
- 02:43 PM feature request #8625 (Resolved): Add count parameter to StateData
- Applied in changeset commit:cdmlib|320e07b697daddc4133325fdea62ca414e0e582e.
- 02:26 PM Revision 5f0a3093 (cdmlib): update H2 test data and model cache
- 02:20 PM Revision 3a1e8815 (cdmlib): cleanup
- 02:10 PM Revision d7c686f4 (cdmlib): ref #8625 add count to StateData to FullCoverageDataGenerator
- 01:28 PM Revision 74b86998 (cdmlib): fix #8466 remove old FeatureTree tables
- 01:27 PM Revision 748cefc1 (cdmlib): cleanup
- 01:26 PM Revision 320e07b6 (cdmlib): fix #8625 add count to StateData
- 12:32 PM Revision 2b8a30e9 (cdmlib): move categorical data up in StateData and cleanup
- 12:11 PM Revision bd074233 (cdmlib): some cleanup for TransmissionEngineDistribution
- 12:10 PM Revision 0ced6c29 (cdmlib): cleanup
- 11:52 AM bug #8582: Taxon Navigator: Classification label not refreshed & new taxa not visible
- I guess this should be reviewed.
- 11:51 AM bug #8641: IAE (IllegalArgumentException) when exchanging name in taxon details view
- It happened when I tried to deduplicate some names in E+M after the IPNI 2019 import
- 11:50 AM bug #8641 (New): IAE (IllegalArgumentException) when exchanging name in taxon details view
- beim Austausch eines Namens für ein Taxon (also Wiederverwendung von Namen) bekomme ich regelmäßig (aber längst nicht...
- 11:43 AM task #8609 (Closed): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
- This seems to be fixed and can be closed.
Please reopen if some task is still left. - 11:38 AM bug #8622 (Feedback): Missing specimen Identifier leads to empty brackets in portal
- I will review after release on publication dataportal.
Can you please still add the link to the relevant portal si... - 11:30 AM feature request #7457 (Closed): E+M: Allow filtering for only published in search
- Seems to work.
Note: maybe we also need something like "Only unpublished", but this is another issue and needs an ... - 11:24 AM bug #8640 (New): Specimen preferences should be disabled if specimens are generally switched off
- If "Show specimen related views and menu entries" is switched off the other preferences should be disabled as they pr...
- 11:19 AM feature request #8226 (Feedback): make modifiers for description elements configurable
- Does not seem to work. If I have all switched on the modifiers do stil not show up.
- 11:13 AM feature request #8410 (Feedback): Add nomenclatural code edition to ruleConsidered in TaxEditor
- 10:57 AM feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Works!
Only some layout issues:
* Please add identation to label to make clear belongs and depends on state of... - 11:13 AM feature request #8486 (Feedback): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Sometimes I realized that the menu only synchronizes after some time. So if I swith from doubtful to not doubful and ...
- 11:08 AM feature request #8486: Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Katja Luther wrote:
> now doubtful is "??", unplaced "?"
I think it is the other way round. But probably it is be... - 10:49 AM feature request #8568 (Closed): improve performance for term and vocabulary preference pages
- Performance is still not really fast sometimes but definetely acceptable for (seldom used) preferences. So we can clo...
- 10:12 AM bug #8639 (New): Reorder Names in Preferences
- Currently the order is
* Nomenclatural Code
* Nomenclatural Status
* Ranks
* Type Designations
* Name De... - 10:03 AM feature request #8572: Rule considered configurable
- Andreas Müller wrote:
> Please have some more identation for the sub-preferences on the name details view. Currently... - 09:56 AM feature request #8572: Rule considered configurable
- Andreas Müller wrote:
> The filtering does not work! Neither for project prefs nor for local prefs
A sorry this w... - 09:55 AM feature request #8572: Rule considered configurable
- Please have some more indentation for the sub-preferences on the name details view. Currently it is only ~1/3 of the ...
- 09:44 AM feature request #8572: Rule considered configurable
- If "rule considered" is not switched on also "Code edition" should be automatically be switched off in the preference...
- 09:42 AM feature request #8572: Rule considered configurable
- ~~The filtering does not work! Neither for project prefs nor for local prefs~~ => see #8572#note-9
- 09:38 AM feature request #8572 (Feedback): Rule considered configurable
- Please use human readable version for rule considered. E.g. by using getMessage().
@AK: which method do you use in... - 09:46 AM bug #8570: PolytomousKeyNode.otherNode missing in REST service response
- I will check this after release. We should link the related dataportal example from cuba(?) - see mail WGB.
- 09:34 AM bug #8584 (Feedback): Appended phrase should be shown on top level for misapplied names
- 09:34 AM bug #8584: Appended phrase should be shown on top level for misapplied names
- Yes the order is correct now and also the selection for top level controls makes sense.
Some open minor issues (op...
10/31/2019
- 03:58 PM Revision 42e926d0 (cdmlib): cleanup
- 03:51 PM Revision 2f18fc04 (cdmlib): cleanup
- 02:29 PM Revision a3314925 (cdmlib): add dummy file to cdmlib-cache/src/test/java to make the folder exist in git-repo
- 12:17 PM bug #8638 (New): Session behavior not deterministic
- It seems that the behavior of the session cache handling is not deterministic. I did exchange a name for a taxon by a...
- 11:27 AM bug #8637 (New): CCE when opening Session View for taxon navigator
- When trying to open the session view for the taxon navigator I get the below exception.
I think it is expected tha...
10/30/2019
- 11:39 PM bug #8612 (Closed): Import E+M IPNI names
- 11:38 PM bug #8612 (Resolved): Import E+M IPNI names
- Applied in changeset commit:cdmlib-apps|910fd9d6b6d97781707bfd9a6d48a3486975ebc3.
- 11:38 PM Revision 910fd9d6 (cdmlib-apps): fix #8612 final changes to E+MIpniImport
- 09:12 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
- This is probably the same issue as in #7699 and especially #7699#note-6
- 09:11 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
- AK, can you explain how far this ticket is related to the "copied to" ticket #8627
- 01:54 PM bug #8626: NullPointerException (NPE) on saving Specimen Editor (list)
- Is this behaviour reproducable? I could not reproduce it
- 04:33 PM Revision 824f5653 (cdmlib): ref #8450 Fix potential NPE
- 04:30 PM Revision eb4a043b (cdmlib): ref #8450 Recurse through parent taxon nodes for default description
- 03:03 PM bug #8605 (Feedback): ClassCastException in Feature editor when adding new Defined Term
- I could not reproduce this exception. But I am not sure what you mean with the 3rd step "choose an existing term (e.g...
- 02:45 PM bug #8605 (In Progress): ClassCastException in Feature editor when adding new Defined Term
- 03:00 PM Revision a2d32af1 (cdmlib): remove whitespace after title for default references with only title and year
- 02:55 PM Revision 4ebcecf9 (cdmlib-apps): ref #8612 implementation of E+MIpniImport (near ready)
- 02:19 PM Revision c2f6e700 (cdmlib): fix test because dna provider is not set as default anymore
- 02:00 PM Revision cdbfdfb0 (cdmlib): cleanup
- 02:00 PM Revision 52a42c7d (cdmlib): ref #8612 use better generics for findByExample
- 01:49 PM Revision e28238b0 (cdmlib): add test file
- 01:27 PM Revision 0203fed0 (taxeditor): rename cdm instance to database
- 01:18 PM Revision 8a720214 (taxeditor): ref #8631: remove the possibility to search for dna when importing from abcd file
- 01:18 PM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- As a workaround the possibility to search for dna is disabled for file import. For the biocase seach it is still poss...
- 10:26 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- The ClassCastException should be solved with the last commit
- 09:56 AM bug #8631 (In Progress): ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- 09:55 AM bug #8631: ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- the media was not imported because of a NPE, this is fixed.
the dna was not associated to the specimen because of wr... - 01:07 PM Revision 4ef89673 (cdmlib): add test for import abcd with search for available dna
- 01:07 PM Revision a021cb95 (cdmlib): remove default dna source
- 01:05 PM Revision c3d2f6db (cdmlib): change biocase provider to herbar to fix test
- 12:04 PM Revision be76eb89 (taxeditor): use same ABCDImportConfiguratorWizardPage for file import and search
- 10:21 AM Revision 92546b65 (taxeditor): ref #8631: fix ClassCastException for abcd import and NPE in abcd preferences
- 09:54 AM Revision f7717334 (cdmlib): ref #8631: fix errors in abcd import
- 12:19 AM bug #8636 (New): Handle "Change to Person" same as deduplication
- Currently when changing a single person team to a person the action is immediately saved and no new search is running...
10/29/2019
- 06:14 PM task #8635 (In Progress): install collectd + facette for server monitoring
- 06:14 PM task #8635 (Closed): install collectd + facette for server monitoring
- We will use collectd + facette for now:
Test installation on edit-test as client and edit-staging as master to c... - 05:57 PM bug #8634 (Closed): NullPointerException (NPE) in PreferencesUtil.getLocalAbcdImportConfigurator() on starting ABCD import
~~~~
login : admin
editor version : 5.11.0.qualifier
server : 160.45.63.230 (edit-WS I) / caryophyllales_demo_01...- 05:48 PM bug #8633 (Closed): version 5.11 can not connect to workshop servers
- connecting works again - thnx!
- 05:44 PM bug #8633 (Resolved): version 5.11 can not connect to workshop servers
- please review whether this is fixed with the last changes
- 05:14 PM bug #8633 (Closed): version 5.11 can not connect to workshop servers
- a picture can tell so much more that 1000 words:
this works with version 5.10 - 05:43 PM Revision df69489f (taxeditor): fix login problem
- 04:50 PM bug #8632 (Closed): ABCD retrieves DNA Sample from Biocase Provider even if it is not selected in the import configuration
- same import configuration shown in #8631
- 03:28 PM bug #8631 (Closed): ABCD import fails to put new taxa into the classification, create mediaspecimens, etc
- To reproduce:
* import attachment:Arenaria_ABCD_one_unit.xml with the below options
at... - 03:08 PM bug #8630 (Closed): ClassCastException when ABCD import has finished
- after a ABCD import has run a ClassCastException happens on processing the result data:
~~~
!MESSAGE An internal ... - 02:24 PM bug #8629: Specimen editor (tree) new FieldUnit not in hierarchy
- The problem I rather a usability problem. The specimen can be dragged onto the field unit to create the hierarchy. Bu...
- 02:16 PM bug #8629 (New): Specimen editor (tree) new FieldUnit not in hierarchy
- I created a new field unit for a specimen by doing a right click on the specimen which has no field unit yet and choo...
- 01:53 PM bug #8628 (Closed): Add ORCID as person identifier
- WGB:
wir sollten darüber nachdenken, wie wir ORCID Identifier mit Personen verbinden - das wäre ein zusätzliches A... - 01:25 PM bug #8582 (Resolved): Taxon Navigator: Classification label not refreshed & new taxa not visible
- Applied in changeset commit:taxeditor|5f0db2701c5631c2d83e7441fc963adfba5c9f8a.
- 01:24 PM Revision 5f0db270 (taxeditor): fix #8582: fix refresh in navigator
- 01:24 PM bug #8627 (New): NullPointerException (NPE) on saving Specimen Editor (list)
- I followed the instrcutions given in Manual-EDIT-Platform-v.1.19b Chapter 4.3.7 and 9.4:
* is started as described... - 01:18 PM bug #8626 (Duplicate): NullPointerException (NPE) on saving Specimen Editor (list)
- I followed the instrcutions given in Manual-EDIT-Platform-v.1.19b Chapter 4.3.7 and 9.4:
* Start with fresh db car... - 01:17 PM bug #8498: Set Flags should show the current status of the flags
- this is already done by showing either "set doubtful" or "remove doubtful" as menu item. But there is a problem with ...
- 12:49 PM bug #7143 (Resolved): Finish not enabled when unprotecting titleCache in new Person dialog
- now it should work correctly, please review
- 12:48 PM Revision 788e46eb (taxeditor): ref #7143: enable finish correctly when titlecache is set
- 12:31 PM feature request #8625 (Closed): Add count parameter to StateData
- `count` should be used to count the number of states summarized in one StateData
Data example for leaf color:
bla... - 11:53 AM bug #8584 (Resolved): Appended phrase should be shown on top level for misapplied names
- please have a look whether the order of the fields make sense. Now all taxon related fields are at the top of the sec...
- 11:48 AM Revision 9ca58dbb (taxeditor): ref #8584: move appended phrase and publish flag
- 11:28 AM feature request #8568 (Resolved): improve performance for term and vocabulary preference pages
- please review
- 10:30 AM feature request #8624 (Closed): Add abbrev title cache to search in bulk editor
- The bulk editor results should also contain results for caches containing abbreviations like TeamOrPerson.nomenclatur...
10/28/2019
- 07:11 PM feature request #8623: BulkEditors: feedback if search is still running/ready and how many records were found
- For long time there is a requirement already to show the number of returned records for the bulk editor. This require...
- 07:08 PM feature request #8623 (New): BulkEditors: feedback if search is still running/ready and how many records were found
- Why did you set this to Feedback?
- 05:33 PM feature request #8623 (Feedback): BulkEditors: feedback if search is still running/ready and how many records were found
- This is actually working but I was too im patient after hitting enter, the search was already executing but without f...
- 05:16 PM feature request #8623 (New): BulkEditors: feedback if search is still running/ready and how many records were found
- It would be nice if the search in a BulkEditor would be executed when the user hits `enter` after typing the query st...
- 03:58 PM Revision d02bffd6 (taxeditor): ref #8450 Fix config labels for default matrix values
- 12:19 PM Revision 34a22853 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
- 11:35 AM bug #8622 (Resolved): Missing specimen Identifier leads to empty brackets in portal
- 11:35 AM bug #8622 (Closed): Missing specimen Identifier leads to empty brackets in portal
- If a specimen has no identifier like accession number, barcode or catalog number there are empty brackets in the spec...
- 11:21 AM Revision 8241040a (cdmlib): Do not show empty brackets if no identifier is present for specimen
10/27/2019
- 07:28 PM feature request #8137: Implement sources for type designations in data portal
- Note: isLectopye() was renamed to hasDesignationSource()
10/26/2019
- 08:52 AM Revision d2c54d6f (cdmlib): cleanup
- 08:51 AM Revision f270c866 (cdmlib): normalize getAllXXX methods in ReferenceService
- 08:16 AM Revision 24ff7df5 (cdmlib-apps): cleanup
- 08:15 AM Revision b5f5a43c (cdmlib-apps): ref #8612 first implementation of E+MIpniImport
- 08:11 AM Revision 31502678 (cdmlib): cleanup
- 08:10 AM Revision 5899ca52 (cdmlib): ref #8612 add marker type for epublished references
- 08:10 AM Revision 932e616d (cdmlib): ref #8612 add Now to VerbatimTimePeriod factory methods
- 08:09 AM Revision b04afca3 (cdmlib): ref #8612 add addOriginalSpelling to TaxonName
10/25/2019
- 05:50 PM bug #8588: function of TaxonNode context menu 'Copy' is unclear
- I like the idea of having something like "Copy classification path" or "Copy hierarchy path" or so. This is something...
- 05:37 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
- Ich meine nicht das verschieben, sondern die Änderung der Semantik. Wir würden ja das jetzige Konzept aufbrechen, das...
- 05:25 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> Also dann müssten wir da alles... - 05:17 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> >
> > > Übrigens sollten wir über... - 04:46 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > Also ich finde das weiterhin gut, die Projektsettings dor... - 04:41 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> > Übrigens sollten wir über ein Recht nachdenken, die DB-P... - 05:20 PM bug #7143 (In Progress): Finish not enabled when unprotecting titleCache in new Person dialog
- Katja can you check the state here.
But we need to be very careful. I remember this has been fixed once but the fi... - 05:17 PM bug #8597: Name and taxon details: UI counter intuitive regarding cache states
- Andreas Kohlbecker wrote:
> The idea of coloring the unused fields can never be applied consistently to the UI
I ... - 04:58 PM feature request #7417 (Resolved): Make pro parte and partial synonym relationships always visible in data portals
- should be fixed already, review is pending.
- 04:33 PM bug #8547 (New): Default type of a newly created inReference should depend on the type of the reference
- Is there a reason why you did set as "Feedback" on me?
- 04:28 PM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- Katja Luther wrote:
> Katja Luther wrote:
> > this problem appears only when the newly created in-reference is not ... - 03:35 PM bug #8547 (Feedback): Default type of a newly created inReference should depend on the type of the reference
- Katja Luther wrote:
> this problem appears only when the newly created in-reference is not of the type journal.
I... - 04:05 PM bug #8621: Do not save empty sources
- The question is how to implement. Maybe we simply take all OriginalSource Objects from the session cache and check if...
- 03:32 PM bug #8621 (New): Do not save empty sources
- In E+M it happened quite often that completely empty sources were created for what ever reason.
We should either de... - 01:00 PM Revision 9ff7f3d8 (cdmlib-apps): merging fauna Eu - Erms -continue
- 12:55 PM bug #7478: Fix pro parte synonym search
- Generally it looks like pro parte synonyms can be searched for but the result in the dataportal is not nice. New tick...
- 12:46 PM bug #8620 (New): Improve pro parte synonym search result for dataportal
- mir fällt gerade auf, dass die Suchergebnisse von pro parte Synonymen im Portal (z.B. E+M) noch sehr unschön sind. Da...
- 09:07 AM bug #8616: Distribution Editor: allow for hiding columns without data
- The table offers the following options on right-click on a column header:
* hide column
* show all columns
may...
10/24/2019
- 10:59 PM bug #8616: Distribution Editor: allow for hiding columns without data
- But definetly I agree that having a saveable projection might really be useful and should be handled with high priori...
- 10:46 PM bug #8616 (New): Distribution Editor: allow for hiding columns without data
- I agree that it is good to be able to easily return to the same settings as before hand. So we should add the functio...
- 04:42 PM bug #8616: Distribution Editor: allow for hiding columns without data
- The use case:
The user edits a taxonomic group which has a very specific distribution in a set of subareas and wan... - 03:57 PM bug #8616 (Feedback): Distribution Editor: allow for hiding columns without data
- Can you describe the use use case when this is really needed a bit more? For taxonomic users I can't really see this ...
- 03:07 PM bug #8616 (New): Distribution Editor: allow for hiding columns without data
- The Distribution Editor should offer an option to hide those columns which do not have any data. In order to get an o...
- 03:42 PM task #8619 (New): Distribution Selection Dialog: optimize column width for more compact layout
- The columns take more space than needed, when showing only ids in the header an cells.
Some means to reduce the c... - 03:23 PM task #8618 (New): Distribution Selection Dialog:
- add tooltip help texts to all buttons
so fat there is only a text for the third button - 03:22 PM task #8617 (New): rename Distribution Selection Wizard -> Distribution Selection Dialog
- since is not a wizard consisting of multiple steps it should be named "Dialog"
- 01:58 PM bug #8615 (New): Distribution Editor: only available if enabled in local preferences
- data base: WS1:carypophyllales_demo_01
The distribution editor is not available in the context menu:
: typo in doc
- 12:49 PM bug #8614 (New): TermEditor: details view does not follow the active term after save
- To reproduce:
* Add new Feature term
* select the new term and modify it in the details view: e.g.: select Suppor... - 11:46 AM Revision 073285dc (taxeditor): ref #8613: add missing interfaces
- 11:45 AM Revision e01ad27b (taxeditor): set flag... should not be enabled for classifications
- 11:13 AM Revision c39ae40f (taxeditor): adapt granted authority editor to feature based rights
- 11:06 AM Revision df947da5 (taxeditor): ref #8239: disable details for missing rights
- 10:06 AM Revision 44d90517 (taxeditor): ref #8613: using default reference also when adding new source in distribution editor
- 10:05 AM feature request #8613 (Closed): For distribution editor default reference should be used also when new source is created
- To confirm an existing status in a new source, the default reference should also be added to a distribution when addi...
10/23/2019
- 02:45 PM feature request #8489: Further issues for DB preferences
- Andreas Kohlbecker wrote:
> * when I set the subject to for example "Germany" I find no means to reset it to "Defa... - 02:34 PM bug #8612 (Closed): Import E+M IPNI names
- 02:32 PM feature request #8611: [DISCUSS] how to handle editor teams
- There is already a discussion on this somewhere, either in an email thread or in a ticket.
Needs to be discussed. Ha... - 10:23 AM feature request #8611 (New): [DISCUSS] how to handle editor teams
- mail ERS:
Es geht um das Formular „Edit Team“.
1.) An welcher Stelle kann oder soll ich einem Autorenteam (b... - 12:00 PM feature request #4877: implement setting for choosing the SourceTypes to be shown
- in deed, this should be easy to do, priority increased, please increase again once it gets more urgent
- 11:34 AM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, panel, pane)
Mein vorläufiges Fazit aus der Umfrage ist, dass alle "Formular-Felder" Editoren sind, also auch der Details-View...- 11:33 AM EDIT Platform Etablierung task #8578: Discuss and find appropriate terms for major editor parts (window, view, editor, panel, pane)
- A poll on editor terms was created on 2019-10-10 : Umfrage https://terminplaner4.dfn.de/enQ2EAH8G7jKtJev
- 10:43 AM Revision 406cc5b9 (cdmlib-apps): remove import TestDatabase
- 09:31 AM Revision 5398839e (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
- 09:30 AM Revision 17d546a5 (cdmlib-apps): ref #1445: smaller changes in activators
- 02:13 AM Revision fae562e5 (cdmlib-apps): update E+M mapping csv file
10/22/2019
- 11:03 PM bug #8610 (Resolved): tagged_text_extract_nomstatus() fails handling more than one status
- Applied in changeset commit:cdm-dataportal|e9ac7c6f253ee5304766130195b650c9767496bb.
- 10:42 PM bug #8610 (Closed): tagged_text_extract_nomstatus() fails handling more than one status
https://www.europlusmed.org/cdm_dataportal/taxon/5f488ccd-526d-4b0c-833d-2014c51e50a7/synonymy?highlite=86e4601d-22...- 11:02 PM Revision e9ac7c6f (cdm-dataportal): fix #8610 tagged_text_extract_nomstatus() can handle multiple status
- 04:41 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
- Andreas Müller wrote:
> ... what about those cases where a dialog pops up and asks if we want to completely delete o... - 04:19 PM task #8599 (New): TypeDesignation details pane: clarify function of the remove buttons
- About the 2 examples: some whitespace is definetely better then the current solution. If we should use a new button i...
- 04:13 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
- Andreas Kohlbecker wrote:
> Does the remove button for the Specimen always relally delete the Specimen or is it o... - 03:51 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
- in the second case the layout could be also changed to
But this would require to adapt t... - 03:45 PM task #8599 (Feedback): TypeDesignation details pane: clarify function of the remove buttons
- How about this?
this way the button group, which acts on the Specimen, is separated fro... - 04:14 PM feature request #8589: Allow undo of typing actions in the textfields
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > We should decide which action to use f... - 04:02 PM Revision 38672714 (cdmlib-apps): ref #8479 add import source to FauEu2CDM/CDM-2-CDM import
- 03:57 PM Revision 2e4f981e (cdmlib-apps): cleanup
- 03:22 PM task #8598: Prevent from adding type designations to names with informal ranks
- Andreas Müller wrote:
> Not sure if we should implement this.
>
> 1. In E+M there were very rare cases of such na... - 03:17 PM bug #8604: Key Editor View: Details for key missing when key is empty
- Isn't ist possible to add a FocusListener to the PolytomousKey table like `viewer.getControl().addFocusListener(e -> ...
- 02:45 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
- Andreas Müller wrote:
> Also ich finde das weiterhin gut, die Projektsettings dort zu haben, wo das Projekt admini... - 02:35 PM Revision 618fae65 (taxeditor): move source section to the bottom of typedesignation section
- 02:12 PM feature request #8569: Supplemental data for PolytomousKeyNodes
- Andreas Kohlbecker wrote:
>This approach would also help in case of the Details-View for a taxon where is is require... - 02:10 PM feature request #8569: Supplemental data for PolytomousKeyNodes
- Interesting idea. Lets use the official(?) name accordion (https://en.wikipedia.org/wiki/Accordion_(GUI)).
Only I ... - 01:14 PM feature request #8569: Supplemental data for PolytomousKeyNodes
- Wouldn't it be an option to extend the supplemental data view, so that it can show the data for multiple entities at ...
- 01:50 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
- I also agree with solution B. But maybe we can add a comma separated label list of the (server side) selected terms. ...
- 12:26 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
- > Set back to "normal"
Agreed!
But, freezing the checklist panes is really ugly. You can't even scroll the chec... - 01:46 PM Revision 9eaf34b7 (taxeditor): adapt editor to changes in typestatus.isLectotype -> hasDesignationSourcve
- 01:25 PM Revision 4a8d1955 (cdmlib): cleanup
- 01:25 PM Revision 0e32b8d4 (cdmlib): rename isLectotype to hasDesignationSource
- 12:03 PM task #8609 (Resolved): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
- 12:02 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
- 2 x +1 von AK und AM
- 12:01 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
- Im Englischen habe ich es mit Leerzeichen geschrieben, allerdings im Deutschen habe ich Taxonknoten geschrieben, würd...
- 12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
- OK, kannst du das erstmal so implementieren. Bei Bedarf können wir es ja nochmal ändern.
AM - 12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
- Hallo,
ich wäre auch eher für TaxonNode Dialog, alle anderen Einträge, die sich Editoren nennen, gehen nicht als D... - 12:00 PM task #8609: Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
- Hallo,
dem schließe ich mich grundsätzlich an. Ich glaube ich hatte das auch hin- und wieder mal angemerkt. Taxon ... - 11:59 AM task #8609 (Closed): Rename Taxon Node context menu entry Open in .. -> Taxon Node Wizard
- Wizard ist ja eher ein Kette von Dialogen, was sich hier öffnet ist ein einfacher Dialog zum Editieren. ("/... Wizard...
- 11:45 AM feature request #8608 (New): Show message in status bar if linking of taxon in navigator failes
- The linking in taxon navoigator failes for taxa without nodes, the check for existing nodes is implemented but we sho...
- 11:31 AM Revision c6828e67 (taxeditor): fix NoSuchElementException for taxa without nodes - continue
- 11:09 AM Revision ffd20969 (taxeditor): fix NoSuchElementException for taxa without nodes
- 10:42 AM Revision c6315a5d (taxeditor): rename taxonnode wizard to taxonnode dialogue
- 10:41 AM Revision a801b069 (taxeditor): rename taxonnode wizard to taxonnode dialog
10/21/2019
- 09:03 PM task #8607: Dataprocessing for GBOL Dataportal/Algaterra
- ToDo Henning Kusber:
Specimen Tool: Check & block all data not related to GBOL or Diatom Group research (as discus... - 01:31 PM task #8607 (New): Dataprocessing for GBOL Dataportal/Algaterra
- In this ticket we describe the steps for dataprocessing before importing data into the algaterra instance.
- 05:39 PM feature request #8137: Implement sources for type designations in data portal
- WGB:
es ist richtig, dass es hier zwei Fälle gibt: Solche, die die Quelle des Records angeben (woher kommt die Inf... - 04:56 PM bug #8604: Key Editor View: Details for key missing when key is empty
- Not sure if this is easy to solve. I had discussions on it with Cherian already. As PKs without node are very rare in...
- 04:51 PM bug #8571: PolytomousKeyNode.otherNode not editable in TaxEditor
- This is probably more or less a duplicate for #2343 so we should check if #2343 can be closed once this is resolved. ...
- 02:01 PM Revision 770828ca (cdmlib-apps): cleanup and ref #8587 handle special form as rank for fungi (IF)
- 01:50 PM feature request #8589: Allow undo of typing actions in the textfields
- Katja Luther wrote:
> Andreas Müller wrote:
> > We should decide which action to use for undo. To me the most intui... - 01:44 PM feature request #8589: Allow undo of typing actions in the textfields
- Andreas Müller wrote:
> We should decide which action to use for undo. To me the most intuitive is "ESC"-key. Any ot... - 01:47 PM Revision a0aeb474 (taxeditor): ref #8562: fix allow override handling in admin distribution status
- 11:52 AM bug #8605: ClassCastException in Feature editor when adding new Defined Term
- Personally I cannot reproduce this, but as it is a CCE we should fix it immediately.
PP+KL can you please decide w... - 11:39 AM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
- Also ich finde das weiterhin gut, die Projektsettings dort zu haben, wo das Projekt administriert wird und die lokale...
- 11:28 AM feature request #4877: implement setting for choosing the SourceTypes to be shown
- I wonder why this ticket has so low priority. I think it should be easy to implement and might be of some relevance i...
- 11:24 AM bug #8601 (Feedback): checkbox lists in preferences - button to expand, collapse, ... not functional
- The buttons are only not functional if "use default settings" is chosen. Therefore I suggest to either close this tic...
- 11:20 AM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
- As discussed in #note-8 and #note-9 this is not critical because not unfucntional, but it needs better UI handling to...
- 11:09 AM task #8599: TypeDesignation details pane: clarify function of the remove buttons
- This behaviour is the same all over the application so users get used to it once they have ever deleted something or ...
- 11:01 AM task #8598: Prevent from adding type designations to names with informal ranks
- Not sure if we should implement this.
1. In E+M there were very rare cases of such names with nom. ref. (so there ... - 10:54 AM Revision ebb98af0 (taxeditor): minor
- 10:51 AM Revision 89d6c211 (cdmlib): ref #8458: revert removing of fieldUnitDto list as parameter
10/20/2019
- 12:56 PM feature request #8589: Allow undo of typing actions in the textfields
- We should decide which action to use for undo. To me the most intuitive is "ESC"-key. Any other suggestions?
Also ...
10/18/2019
- 05:59 PM bug #8606 (New): Feature Editor: new term should be focused and named more prominently
- * After adding a new term the term which accidentally is under the cursor is focused, leaving the impression that thi...
- 05:46 PM bug #8605 (Worksforme): ClassCastException in Feature editor when adding new Defined Term
- to reproduce
* Use the database `edit-WS I/caryophyllales_demo_01`
* open feature editor: Window > Terms > Featur... - 03:54 PM bug #8604 (New): Key Editor View: Details for key missing when key is empty
- As long as there are no entries in the key the details view is just blank.
Instead the properties for the key itsel... - 02:57 PM bug #8603 (New): Image Details: image preview not working for some sources
- The image at this URL https://www.seedlingsandcuttings.eu/media/com_hikashop/upload/lymanbensonia_micrantha_flower_16...
- 12:56 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
- Hallo Andreas,
am besten besprechen wir das nächste Woche alle zusammen, wenn auch Andreas M. wieder da ist. Da bi... - 12:55 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
- Hallo Katja,
in den meisten Fällen orientiert sich der Aufbau vom Menüs an funktionalen Zusammenhängen. Ein so sta... - 12:55 PM task #8602: Discuss: Local Preferences & Server-sided Preferences in same menu?
- Hallo Andreas,
wir haben damals alles, was nur als Admin nutzbar sein soll in das Admin Menü geschoben, eben auch ... - 12:55 PM task #8602 (New): Discuss: Local Preferences & Server-sided Preferences in same menu?
- Hallo,
gibt es einen guten Grund warum die Local Preferences in Window die Server-sided Prefernces in Admin sind?
... - 11:17 AM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
- Katja Luther wrote:
> Do you select "Use local settings"? Otherwise the checkbox list is disabled.
>
You are r... - 10:56 AM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
- Do you select "Use local settings"? Otherwise the checkbox list is disabled.
That the list is frozen in a strange...
10/17/2019
- 06:32 PM feature request #8489: Further issues for DB preferences
- I have some more probelms for which I did not find mentioned in here:
Further Problem:
... - 05:25 PM bug #8601 (Feedback): checkbox lists in preferences - button to expand, collapse, ... not functional
- The button row on top of checkbox lists (Available Languages, Features) are not functional:
... - 05:20 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
- I suggest solving this issue quite soon since it blocks from setting up the editor for effective use.
- 02:40 PM Revision fa53f121 (cdmlib): ref #1445: code cleaning - continue
- 02:38 PM Revision 4678a7ed (cdmlib): ref #1445: code cleaning
- 02:02 PM Revision e592fdfe (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
- 02:02 PM Revision c972cf2d (cdmlib-apps): ref #1445: adapt merging activator to changes in cdmlib
- 02:01 PM Revision 43892a41 (cdmlib): ref #1445: improve search for identical names
- 01:30 PM bug #8600 (Resolved): Taxon Navigator: tree no longer scrolls while draging a taxon node
- Applied in changeset commit:taxeditor|8e64a09b23329e2a903eb57a69ab9861bd9acd79.
- 01:07 PM bug #8600 (Closed): Taxon Navigator: tree no longer scrolls while draging a taxon node
- The tree in the Taxon Navigator should automatically scroll when a taxon node is dragged close to the edge of the con...
- 01:29 PM Revision 8e64a09b (taxeditor): fix #8600: enable scrolling for drag & drop
- 12:46 PM Revision 9a17a3b1 (taxeditor): adapt tax editor to changes in longrunning task service
- 12:37 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
- Katja Luther wrote:
> The most right delete button removes the whole type designation and the other delete button re... - 12:30 PM task #8599: TypeDesignation details pane: clarify function of the remove buttons
- The most right delete button removes the whole type designation and the other delete button removes the specimen from...
- 12:17 PM task #8599 (New): TypeDesignation details pane: clarify function of the remove buttons
- The TypeDesignation details pane offers two identical buttons with the trashcan icon, both show "Remove" when hoverin...
- 12:24 PM Revision 67ce7111 (cdm-dataportal): ref #8595 Show associated specimen on description detail page
- - drupal formatting code
- 12:17 PM Revision 0e2ba0e1 (cdmlib): adapt defaultApplicationContext to moved longRunningService
- 12:09 PM Revision ca82cffd (cdmlib): move longrunningService to service
- 11:52 AM Revision 9d88232c (cdm-dataportal): ref #8595 Fix taxon page TOC
- 11:41 AM bug #8591: Multiple representations problem on setting synonym as basionym
- If you save before drag it as homotypic synonym, it works.
The person which causes the multiple representation excep... - 11:31 AM Revision 4a3669c6 (cdm-dataportal): ref #8596 Only show TOC entry when data available
- 11:20 AM task #8598 (New): Prevent from adding type designations to names with informal ranks
- Adding typedesignations to names with informal ranks (species groups and aggregates) should be supressed, whereas re...
- 10:04 AM Revision 5d7a1103 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
- 10:04 AM Revision 99e61c10 (cdmlib): fix app-import cache updater
10/16/2019
- 05:45 PM Revision af9984b8 (cdmlib): ref #8595 Add sources to description init strategy
- 05:38 PM Revision 8b384421 (cdm-dataportal): ref #8595 Show clickable sources on description detail page
- 04:25 PM bug #8597: Name and taxon details: UI counter intuitive regarding cache states
- Ahh, now I understand the problem, it is the TaxonName.titleCache which is still protected.
I completely overlooke... - 03:08 PM bug #8597 (New): Name and taxon details: UI counter intuitive regarding cache states
- It turned out that the originally reported problem was not a technical one but rather caused by the users sightlessne...
- 03:02 PM Revision e170a53e (cdm-dataportal): ref #8595, #8596 Show list of aggr. descriptions on taxon page and link to detail page
- 02:59 PM feature request #8596 (Closed): Add a list of descriptions to the taxon page
- On the general taxon page the descriptions belonging to this taxon should be listed.
They should be separated by t... - 02:58 PM feature request #8595 (Closed): Create description detail page
- Create a description detail page like it already exists for e.g. specimens.
From additivity wiki:
Wir brauchen ... - 09:18 AM bug #8594 (Closed): registration search results page showing: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
- 09:06 AM bug #8594 (Resolved): registration search results page showing: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
- Applied in changeset commit:cdm-dataportal|5213125b3da787f8576f6430dd76ebc87d25a0f2.
- 08:37 AM bug #8594 (Closed): registration search results page showing: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
- A drupal error is displayed on pages where registration dtos are shown:
~~~
cdm_compose_url(): missing pathParame... - 09:06 AM Revision 5213125b (cdm-dataportal): fix #8594 support for Registration, occurrences, events in cdm_base_url(), sanitizing base ulrs in cdm_tagged_text_expand_entity_references() & better problem reporting
- 08:48 AM Revision ec49a23d (cdmlib): ref #8450 Add service method to find default description
10/15/2019
- 05:23 PM bug #8593 (Duplicate): Name editor: wrong context menu for synonyms
- frequently the wrong context menu is shown for synonyms. It looks like the right click is interpreted as right click ...
- 04:24 PM bug #8592 (New): consider renaming menu entry General->Switch User
*Switch User* actually de-connects from the current database and re-displays the connect dialog.
The label *Swi...- 03:26 PM bug #8591 (In Progress): Multiple representations problem on setting synonym as basionym
- * Database: http://ws1.cybertaxonomy.org/caryophyllales_demo_01]
* EDIT Taxonomic Editor, Version: 5.10.0, Build Dat... - 12:44 PM bug #8590 (Duplicate): Details view does not show data of new synonym
- To reproduce:
* Create new Taxon: Lymanbensonia incachacana (Cárdenas) Barthlott & N.Korotkova in Wildenowia 40(2)... - 12:09 PM bug #7143: Finish not enabled when unprotecting titleCache in new Person dialog
- The problem persists, even if a commit exists for this issue.
- 11:58 AM feature request #8589 (New): Allow undo of typing actions in the textfields
- This is a request from the EDIT workshop 2013.
typing actions in the textfields as long as the text field is focus...
10/14/2019
- 03:44 PM bug #8588 (New): function of TaxonNode context menu 'Copy' is unclear
- The Copy menu item is places directly after *Delete*. *Delete* removes the taxon node instance but *Copy* does not co...
- 03:30 PM Revision 9cfe15fd (taxeditor): ref #8450 Fix config labels for default matrix values
- 11:23 AM Revision 6ca34ebe (taxeditor): ref #8450 Fix imports
- 11:07 AM Revision 6bf3f55e (cdmlib): ref #8450 Store default description wrapper in specimen wrapper
- 11:06 AM Revision 647d3230 (cdmlib): ref #7957 Add (web) service for filtering descriptions by type
- 10:53 AM Revision c85838fb (taxeditor): ref #8450 Set config labels according to default values
10/13/2019
- 12:58 AM Revision d9ece393 (cdmlib-apps): ref #8587 handle null rank names in PESI export a bit better
- 12:56 AM Revision 1363732b (cdmlib-apps): minor
- 12:55 AM Revision 02bf7c25 (cdmlib-apps): ref #2826 fix IF subspecies import, link to genus if species not exists
- 12:53 AM Revision b313991f (cdmlib-apps): adapt some classes to new CommonService.getSourcedObjectSByIdInSource and cleanup
- 12:51 AM Revision 812d0045 (cdmlib): remove old CommonService.getSourcedObjectSByIdInSource
10/12/2019
- 11:51 PM Revision e0935f63 (cdmlib-apps): adapt some classes to new CommonService.getSourcedObjectSByIdInSourceC and cleanup
- 11:49 PM Revision 3bc8dd61 (cdmlib): add additional method for more specific return type of CommonService.getSourcedObjectSByIdInSource
- 11:04 PM Revision 2d09ccf7 (cdmlib): add more specific return type to CommonService.getSourcedObjectByIdInSource
- 11:02 PM Revision 925afb79 (cdmlib-apps): cleanup
- 05:26 PM Revision a3842bd8 (cdmlib): cleanup
- 12:07 PM Revision 891031f6 (cdmlib): ref #8509, ref #8508 some fixes to E+M PESI export and validation
- 12:06 PM Revision d9f92b40 (cdmlib-apps): ref #8509, ref #8508 some fixes to E+M PESI export and validation
- 12:05 PM Revision 1f9eb0e0 (cdmlib-apps): ref #8509 fix trailing whitespace for reference titleCaches
- 12:01 PM Revision 506f2414 (cdmlib-apps): ref #8577 cleanup E+M PESI validation
- 11:59 AM Revision 8e00239d (cdmlib-apps): ref #8587 adapt IF exporter
- 11:57 AM feature request #8587 (New): [PESI][IF] Implement IF specific CDM export
- Open issue:
* For Sordariomycetidae and all children the kingdom can not be defined. See comment in #2717 for reason - 11:22 AM Revision ffd6058e (cdmlib-apps): ref #2826 cleanup IF import
10/11/2019
- 03:46 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
- This is probably mentioned in some "remaining preferences issues" ticket. At least it is known. Can you please check?
- 12:15 PM bug #8586 (New): Feature checkbox lists in perferences can neither be modified nor be scrolled
- It is not possible to change the state or to scroll the list of checkbox items in the settings for Features, Language...
- 03:44 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
- I am sure there is a duplicate ticket for this already. Can you please check.
- 11:39 AM feature request #8585 (Closed): Factual Data View: new DesctiptionElements shoud be selected immediately
- After creating a new factual data entry (DescriptionElement) in the Factual Data View the new entry should be activat...
- 03:39 PM feature request #8128: Add indicator for feature facts and/or vocabularies which description type they support
- WGB:
bin mir nicht sicher, ob Gebietsbezeichnungen (geogr., ökol.) features sind, aber sie können sich durchaus a... - 02:19 PM Revision 8543d48b (cdmlib-apps): cleanup
- 02:19 PM Revision b639d1f2 (cdmlib-apps): ref #8577 updates to the E+M PESI export validation
- 02:19 PM Revision a2a0c1de (cdmlib-apps): ref #2717 some fixes E+M Pesi export
- 02:19 PM Revision f53e8dce (cdmlib-apps): reef #2717 add notNull handling to description export
- 01:48 PM Revision 869b76f8 (cdmlib): ref #2717 improve SimpleFilterMapper to use allowed and not allowed values
- 01:46 PM Revision 580e88c9 (cdmlib): ref #2717 fix notNull handling in ObjectMapper
- 01:45 PM Revision c0a697ab (cdmlib): ref #2717 improve ExportIgnore and NotYetImplemented and NullMapper
- 01:44 PM Revision da9caa6c (cdmlib): fix annotation mapper includedTypes handling
- 01:44 PM Revision 62262304 (cdmlib): cleanup
- 11:52 AM bug #8581 (Closed): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
- I think we do not need a review, so I close this ticket.
- 11:39 AM bug #8581: Naming inconsitency: Taxon Navigator or Taxonomic Tree?
- Applied in changeset commit:taxeditor|10dd6a16ad49bd78857ddd4bb86aa25d5a5cdf30.
- 11:26 AM bug #8581 (Resolved): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
- This change of the name came with the migration to e4. The variable for the title string was name.view.0 (="Taxon Nav...
- 11:39 AM Revision 10dd6a16 (taxeditor): fix #8581: renaming taxon navigator
- 10:11 AM bug #8584: Appended phrase should be shown on top level for misapplied names
- Was there a ticket which decided to create a subsection? If yes, please relate it to this ticket.
- 10:11 AM bug #8584 (Closed): Appended phrase should be shown on top level for misapplied names
- Currently when editing misapplied name relationships in details view the details view has a subsection for taxon info...
- 09:42 AM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
- As far as I understand the problem, we need to implement the `furtherVotingDescisions(CdmAuthority CdmAuthority, Targ...
10/10/2019
- 08:23 PM feature request #8583: Change Longitude Latitude to Latitude Longitude in Vaadin Geo location
- 
- 08:22 PM feature request #8583 (New): Change Longitude Latitude to Latitude Longitude in Vaadin Geo location
- Type Specimen Editor:
Change Longitude/Latitude to Latitude/Longitude in Vaadin Geo location.
Reason: In publicat... - 05:49 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
- 1. The Classification label is not refreshed in the Taxon Navigator after changing it in the "Classification Wizzard...
- 05:42 PM bug #5670: Refresh of Taxon Navigator
- I think this ticket needs more details.
Refresh of what? General refresh of all nodes and the classifications? - 05:19 PM bug #8545: Name editor: Erroneous status in Status type cannot be made withdrawn
- Reason: a valid name (Botany) has no status information, wheras nom. val. is explicitly a zoological status with diff...
- 05:12 PM bug #8581: Naming inconsitency: Taxon Navigator or Taxonomic Tree?
- Can you check when (and why, in which context) it was changed. I can't remember that we decided to rename it.
To m... - 04:28 PM bug #8581 (Closed): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
- The View is named like "Taxonomic Tree" but the menu entry is Window->Show View->"Taxon Navigator"
In the manual "... - 03:06 PM EDIT Platform Etablierung task #8580 (In Progress): Update documentation to latest revision of the Taxeditor
- 03:06 PM EDIT Platform Etablierung task #8580 (Closed): Update documentation to latest revision of the Taxeditor
Documents to check:
* Manual-EDIT-Platform-01-INSTALL.docx **DONE**
* Manual-EDIT-Platform-02-DEMO.docx
* Manu...- 02:58 PM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
- Andreas Müller wrote:
> is this only an UI issue or is it also a cdmlib-security issue?
I think this is also a cd... - 12:01 PM Revision 972ff1cf (cdmlib): fix incorrect obligatory handling in DoiMapper and TimePeriodMapper
- 12:00 PM Revision faa0db48 (cdmlib): ref #2717 allow notNull for SingleAttribute mappers (needed for required fields in PESI)
- 11:58 AM Revision 15cfae05 (cdmlib): ref #2717 fix incorrect error handling in CollectionExportMapping, only throw exception for single record, not all records
- 11:56 AM Revision 66925277 (cdmlib): fix incorrect defaultValue handling in BooleanMapper factory method
- 11:55 AM Revision 23720f5f (cdmlib): cleanup
- 10:57 AM Revision e0a12099 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
- 10:56 AM Revision 3f87d726 (cdmlib-apps): fix compile errors in app-import
- 10:11 AM Revision af221f0d (cdmlib-apps): commented 2 lines to make edaphobase compile
- 09:47 AM Revision dd919d85 (cdmlib-apps): reef #2717 better handling of status undefined
- 09:47 AM Revision 9d857396 (cdmlib-apps): ref #2717 add Valencian, High Aragonese, Majorcan and Faroer to PESI Export
- 09:47 AM Revision 8d5e5e53 (cdmlib-apps): cleanup
- 09:47 AM Revision b9dcae47 (cdmlib-apps): cleanup
- 09:32 AM Revision bf7e9675 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
- 09:31 AM Revision ff5db610 (cdmlib-apps): ref #1445: merging fauna europaea and erms
10/09/2019
- 09:22 PM bug #8579: Search in PhycoBank Portal with error
- Search for scientific name Planothidium: 34x error
- 07:18 PM bug #8579 (Worksforme): Search in PhycoBank Portal with error
- Search for Publication "Wetzel". Search is working but errors are displayed.
 - 09:05 PM Revision 855ea64a (cdmlib-apps): ref #1444, ref #8509 add defined vocabulary to ERMS areas
- 09:04 PM Revision 81bc4733 (cdmlib-apps): ref #2717 add EM common name area handling to PesiTransformer
- 09:01 PM Revision e2fb06b3 (cdmlib): cleanup
- 09:00 PM Revision 9801bfb4 (cdmlib): ref #2717 add EM common name area UUIDs to BerlinModelTransformer
- 05:04 PM EDIT Platform Etablierung task #8578 (Closed): Discuss and find appropriate terms for major editor parts (window, view, editor, panel, pane)
- In the Taxeditor documentation the term 'window' is being used as simple and common term to refer to the various top ...
- 02:49 PM Revision 4b6dc990 (taxeditor): Remove unused class variable
- 02:49 PM Revision e9958b2a (taxeditor): ref #8450 Expand matrix rows only to taxon level
- 01:08 PM Revision 0c308148 (cdmlib): cleanup
- 11:25 AM Revision 5afad693 (cdmlib-apps): # 2717 fix NPE in finding areas (still needs to be tested by ERMS import)
- 11:24 AM Revision 99414418 (cdmlib-apps): # 2717 better logging for E+M distribution status "undefined"
- 11:23 AM Revision 9fe94bfe (cdmlib-apps): # 2717 improve handling of name types which do not exist as taxa (in the area)
- 11:22 AM Revision ab4a17f5 (cdmlib-apps): # 2717 fix finding kingdom for valueless EM taxa
- 11:19 AM Revision b643bc02 (cdmlib-apps): ref #8577 some changes to E+M export validation
- 11:16 AM Revision 6f79628c (cdmlib-apps): # 2717 cleanup and better logging for PesiExport
- 11:05 AM Revision fb82651c (cdmlib): #8577 fix handling of long values in getUniqueInteger
- 11:05 AM Revision 5d0804d6 (cdmlib): cleanup
- 11:03 AM task #8577 (In Progress): [PESI][E+M] Validation for E+M export
- Implement validation for E+M export to PESI warehouse
Maybe duplicated by #2792 - 10:40 AM Revision 3f5bef06 (cdmlib): ref #1445: fix helper methods for pesi merging
10/08/2019
- 11:30 PM Revision 01bc5fe1 (cdmlib-apps): ref #8508 some refactoring for ERMS validation
- 11:29 PM Revision 55da90fc (cdmlib-apps): ref #1444 trim displayname for ERMS import
- 11:28 PM Revision 2e058f2b (cdmlib-apps): # 2717 add PesiEuroMedValidator
- 11:28 PM Revision 67426b79 (cdmlib-apps): ref #2717 adapt PesiExport to EuroMed requirements and adapt PesiExportActivatorEM
- 11:23 PM Revision 803707ee (cdmlib-apps): GreeceImageActivator latest import file
- 11:22 PM Revision 2f628c0c (cdmlib-apps): cleanup
- 10:54 PM Revision e5c18a95 (cdmlib): fix default schema validation for ImportConfiguratorBase
- 10:54 PM Revision e0f9407f (cdmlib): cleanup
- 10:54 PM Revision 73eeeb34 (cdmlib): ref #1444 add diffIndex method to CdmUtils
- 10:21 PM Revision d346bae9 (cdmlib-apps): ref #2717 script for adding E+M source to all E+M taxa
- 12:23 PM Revision 87820880 (cdmlib): smaller changes in CdmLightExport (syn sec and fullAuthor in references)
- 10:22 AM task #8576 (New): [PESI][DW] Dokumentation for PESI export
- This ticket documents how to run a complete PESI export. Later the content will be moved to a Wiki page.
* Ask fo...
10/07/2019
- 09:24 PM Revision 58cd368c (cdmlib-apps): ref #8509 use kingdomId to define rank for PESI export
- 09:23 PM Revision 22e0d6ae (cdmlib-apps): ref #8509 use EnumSet instead of BitSet for source definition
- 09:21 PM Revision 39d481af (cdmlib-apps): cleanup
- 08:48 PM Revision 787b3ec2 (cdmlib-apps): ref #8509 cleanup rank handling in PesiTranformer
- 08:46 PM Revision 0b1be0da (cdmlib-apps): ref #1444, ref #8508 move diffIndex method to CdmUtils
- 05:57 PM EDIT Platform Etablierung task #8555 (In Progress): Evaluate document format and management for the documentation
- 01:55 AM Revision 65866505 (taxeditor): fix compile error
- 12:51 AM Revision b8fc4ee4 (cdmlib): ref #1444, ref #8509 adapt IncludedInMapper and TaxonRelationshipType uuid access to ERMS needs
- 12:49 AM Revision 57fc748f (cdmlib-apps): ref #8508 adapt ERMS pipeline validator to taxon relationships
- 12:49 AM Revision 54a3d685 (cdmlib-apps): cleanup
- 12:48 AM Revision 41cf69c5 (cdmlib-apps): ref #1444, ref #5809 fix taxon relationships in ERMS import and export
- 12:43 AM Revision aa44c220 (cdmlib-apps): ref #1444 improve logging and case sensitive handling for synonym relationship type
- 12:42 AM Revision 75f6d666 (cdmlib-apps): ref #8509 add included taxon relationship export to PESI
- 12:39 AM Revision d87e224c (cdmlib-apps): ref #5809 change partition size for source export
10/06/2019
- 03:03 PM Revision c1ff510c (taxeditor): cleanup
- 10:04 AM Revision 9afc9463 (cdmlib-apps): ref #8508 add TODO to validation
- 10:03 AM Revision 664255b8 (cdmlib-apps): ref #8508 add nomstatus, name rel and taxon rel validation
- 10:00 AM Revision 2b21e6b8 (cdmlib-apps): ref #8508 add Monera to ERMS validation again
- 09:58 AM Revision 7599c655 (cdmlib-apps): ref #1444 revert order of nomstatus to make it similar to SQL script
- 09:57 AM Revision 60d45927 (cdmlib-apps): cleanup
- 09:56 AM Revision 1bbfa4c0 (cdmlib-apps): ref #1444 fix included in and synonym relationship handling for ERMS import (1 rel per taxon)
- 09:53 AM Revision a39ba704 (cdmlib-apps): ref #1444 implement ERMS getSynonymRelationTypesByKey
- 09:52 AM Revision 6dbf7ff0 (cdmlib-apps): ref #1444 make ERMS getNomenclaturalStatusByKey case insensitiv
- 09:48 AM Revision 397a8033 (cdmlib-apps): ref #1444, ref #8508, ref #8509 move synonymTaxonRelationshiptype uuid to TaxonRelationship class
- 09:46 AM Revision b607fa1a (cdmlib-apps): ref #8509 handle doubtful NomenclaturalStatusType.COMB_NOV() to PESI export
- 09:44 AM Revision 7dcac868 (cdmlib-apps): ref #8509 add missing misapplied name and pro parte synonym relations to PESI export
- 09:42 AM Revision 0049964a (cdmlib-apps): cleanup
- 09:38 AM Revision 5ee6ca0b (cdmlib-apps): minor for Greece import
- 09:37 AM Revision 1a278727 (cdmlib): ref #1444 make getTaxonRelationshipType public in importers to make it usable in mappers
- 09:37 AM Revision 63c18ef5 (cdmlib): ref #1444 handle no language as unknown language for imported new nomenclatural status
- 09:37 AM Revision 8588c491 (cdmlib): ref #1444, ref #8509 move ERMS synonym taxon relationship uuids to TaxonRelationship class
- 09:37 AM Revision 0578d459 (cdmlib): ref #1444 adapt DbImportSynonymMapper to ERMS requirements
- 09:37 AM Revision 52c1c6a3 (cdmlib): ref #1444 add getSynonymRelationTypesByKey to IInputTransformer
- 09:37 AM Revision 95c828bc (cdmlib): ref #8509 fix NPE in getAnnotations(by type-uuid)
- 09:37 AM Revision f1319b4b (cdmlib): reduce log level for non latin nom status representations
- 09:36 AM Revision 74336004 (cdmlib): cleanup
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