Activity
From 04/28/2020 to 05/27/2020
05/27/2020
- 11:04 PM feature request #8978: Implement measurement values as BigDecimal
- Update script works.
Still needs active testing with aggregation algorithm and polytomous key generator if algebra... - 04:45 PM feature request #8978: Implement measurement values as BigDecimal
- The adaption for the editor are done as well, please have a look.
- 11:00 PM task #9037 (In Progress): Remove old Feature.supportedXXX columns
- 10:58 PM task #9037 (Closed): Remove old Feature.supportedXXX columns
- 10:56 PM feature request #9033 (Feedback): Adapt TaxEditor to new TaxonNode.status
- This is mostly fixed. 2 remaining issues:
* rename label "status" to "placement status" to clearly distinguish fr... - 02:50 PM feature request #9033 (Closed): Adapt TaxEditor to new TaxonNode.status
- see alos #9005
The 3 checkboxes for unplaced, doubtful and excluded needed to be changed to a dropdown (or a radio... - 10:53 PM task #9036 (In Progress): Remove old TaxonNode.unplaced/doubtful/excluded columns
- 10:52 PM task #9036 (Closed): Remove old TaxonNode.unplaced/doubtful/excluded columns
- 10:51 PM feature request #9005 (Closed): Make the TaxonNode flags alternatives and change excluded notes to status notes
- Update script works and functionality tested in TaxEditor.
- 02:46 PM feature request #9005 (Resolved): Make the TaxonNode flags alternatives and change excluded notes to status notes
- 10:41 PM feature request #9027 (Closed): Implement Feature.availableFor
- Update script works as expected.
- 10:37 PM feature request #9026 (Closed): Implement Feature.supportedDataTypes as EnumSet
- The update script works as expected.
- 10:34 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- There is still big one open issue: adding the first specimen does not work by context menu because the context menu i...
- 12:18 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- 10:33 PM Revision ffeb89d3 (taxeditor): fix #9035: fix NPE in reference details
- 10:33 PM feature request #8991 (Resolved): Add feature "Flowering Period"
- Still need to check if supportsTemporalData is autoamtically created on production (on test and integration it is not...
- 10:10 PM feature request #8991 (Closed): Add feature "Flowering Period"
- Works, only on test server some terms are still labeled "Flowering Season" as no update script was written for these ...
- 10:32 PM bug #9035: Reference details view throws NPE
- this should be fixed, please review
- 10:31 PM bug #9035 (Resolved): Reference details view throws NPE
- Applied in changeset commit:taxeditor|ffeb89d337c49cbf09651d6fead3aeec6591725f.
- 07:59 PM bug #9035: Reference details view throws NPE
- Also in the nom. ref. label field the reference does not appear anymore. Don't know if this is related:
: Reference details view throws NPE
- As this is a serious regression it needs to be fixed asap.
- 07:52 PM bug #9035 (Closed): Reference details view throws NPE
- Using the reference bulk editor is not possible because when clicking on any reference the following NPE is thrown (p...
- 10:16 PM Revision 7f6f2415 (taxeditor): revert button for doi element because it produces NPE
- 10:14 PM feature request #8802 (Closed): Implement flowering period for Flora of Cyprus
- 09:43 PM bug #8964 (Closed): Improve label for homonym relationships
- Update script result tested on test server (for DB cdm_greece_bupleurum)
- 08:01 PM feature request #8988: Add link button to DOI field for references
- Review is blocked by #9035
- 08:00 PM bug #8999: Verbatim date not persisted for books
- Review is blocked by #9035
- 07:27 PM bug #8901: Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
- Is this fixed and should be reviewed?
- 06:40 PM Revision 8481f952 (taxeditor): cleanup
- 05:03 PM Revision b5f97760 (taxeditor): revert commented code in last commit
- 04:52 PM Revision 8982c548 (taxeditor): remove unused class QuantitativeDataStatistics
- 04:44 PM Revision c929d34b (taxeditor): ref #9033: adapt editor to taxonnode.status
- 04:35 PM Revision bf20bbfd (taxeditor): adapt editor to value of statisticalMeasurementValue as BigDecimal
- 04:07 PM Revision 7e219fcc (cdm-dataportal): cleaning up menu hook
- 04:03 PM Revision d9bcd810 (cdmlib): ref #9034 agent portal list service for agents
- 04:02 PM feature request #9034 (Closed): simple agent list page with filter function
- for providing persons to IPNI a agent page which can list person filtered by markers is needed.
Extensions of sele... - 01:56 PM Revision 9ce4dbb8 (cdm-vaadin): cleanup
- 01:56 PM Revision aed50618 (cdm-vaadin): ref #9005 try to fix unplaced in CdmQueryFactory and LeafNodeTaxonContainer
- 12:31 PM Revision c4eae296 (cdm-vaadin): ref #9005 try to fix unplaced in CdmQueryFactory
- 12:15 PM Revision 9a357016 (cdm-vaadin): cleanup
- 12:15 PM Revision 11a51de3 (cdm-vaadin): ref #9005 adapt vaadin tests to new TaxonNode.status
- 12:13 PM Revision 532ef360 (taxeditor): fix #7774: show description source in details view of description element
- 12:12 PM feature request #7774: Show description source for description elements
- please review
- 12:11 PM feature request #7774 (Resolved): Show description source for description elements
- Applied in changeset commit:taxeditor|532ef36053700bf9a053e0bc077797d5859dc0cc.
- 11:52 AM Revision d96830e8 (cdm-vaadin): ref #9005 adapt NewTaxonBasePresenter to new TaxonNodeStatus
- 11:39 AM Revision e8757a43 (cdmlib): updating cdm.map.ser to v5.15
- 11:33 AM Revision 4ac4d9de (cdm-vaadin): update vaadin test H2 to v5.15
- 11:33 AM Revision 9645d30c (taxeditor): update taxeditor test H2 to v5.15
- 11:29 AM Revision 304b49af (taxeditor): cleanup
- 11:22 AM Revision ff159e9b (cdmlib): add doubtful to TaxonNodeDtoBeanProcessor
- 11:22 AM Revision 5d3fbc0d (cdmlib): update cdmlib test H2 to v5.15
- 11:22 AM Revision 4279b3d2 (cdmlib): cleanup
- 11:22 AM Revision 284fff5f (cdmlib): ref #9005 rename TaxonNode.excludedNote -> statusNote and replace flags by status enum
- 11:22 AM Revision e922f2cf (cdmlib): ref #9027, ref #9026 update scripts for Feature.availableFor and .supportedDataTypes
- 11:22 AM Revision 611cddea (cdmlib): ref #9027 add termloading for available for and some fixes for availableFor
- 11:22 AM Revision 4f684909 (cdmlib): cleanup
- 11:22 AM Revision 44f43fdb (cdmlib): ref #8978 add integer factory method to StatisticalMeasurementValue
- 11:22 AM Revision 9e66b970 (cdmlib): cleanup
- 11:22 AM Revision a8b31160 (cdmlib): ref #7140 , ref #8802 implement supportedDataTypes and availableFor for Feature
- 11:22 AM Revision 0e662ec9 (cdmlib): fix #8978 remove NewFloat2BigDecimalInstance from ColumnTypeChanger
- 11:22 AM Revision 7bc66dc3 (cdmlib): ref #8802 fix DescriptionElementBase.clone for timeperiod
- 11:22 AM Revision 6ccc3268 (cdmlib): cleanup and minor
- 11:22 AM Revision 896e39f4 (cdmlib): ref #8802 implement TemporalData
- 11:22 AM Revision 67988f41 (cdmlib): ref #8802 fix toString for freetext in ExtendedTimePeriod
- 11:22 AM Revision 63ef266f (cdmlib): fix #8978 implement BigDecimal for StatisticalMeasurementValue - DwcaExportTest
- 11:22 AM Revision 77be8ad2 (cdmlib): ref #8802 add ExtendedTimePeriod
- 11:22 AM Revision cfb46071 (cdmlib): cleanup
- 11:22 AM Revision 83375c02 (cdmlib): fix #8978 implement BigDecimal for StatisticalMeasurementValue test schemas
- 11:22 AM Revision 2a686ccd (cdmlib): cleanup
- 11:22 AM Revision 258ee218 (cdmlib): fix #8978 implement BigDecimal for StatisticalMeasurementValue
- 11:22 AM Revision 86e5e961 (cdmlib): cleanup
- 11:22 AM Revision 43804768 (cdmlib): fix #8964 update later homonym labels and titleCaches
- 11:22 AM Revision 7a9e6f27 (cdmlib): start SchemaUpdater_5120_5150
- 11:22 AM Revision 91ce7c17 (cdmlib): cleanup
- 09:48 AM feature request #9031: Adapt CdmLightExport to new TaxonNode.status
- WGB:
um die Kompatibilität zu gewährleisten, wäre mir hier die zusätzliche Einfühurung eines bol. attributs Doubtf... - 09:03 AM Revision adefee3d (taxeditor): copy icon for character matrix to editor package
05/26/2020
- 04:56 PM Revision ad25caec (cdm-server): logging http port
- 04:47 PM Revision 212f99b8 (taxeditor): ref #8450: descriptive data set title as label for descr. dataset editor
- 04:37 PM Revision 76ad0c3c (taxeditor): ref #8450: add icon to matrix tab
- 04:26 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- Andreas Müller wrote:
> Should this be reviewed by someone?
I think this is not really needed, but having someone... - 04:11 PM feature request #9025: allow for creating a new schema in empty dbs via the remote login dialog
- Should this be reviewed by someone?
- 04:23 PM feature request #9027 (Resolved): Implement Feature.availableFor
- 04:18 PM feature request #9032 (Closed): Implement Feature.availableFor in TaxEditor
- The alternatives should be available as checkboxes in the Feature details view similar to supportsXXX.
Also the va... - 03:31 PM feature request #9022: Implement lifespan for Person Details View
- Life span of a person, or date a person has published nomenclatural novelties, e.g.
1795-1876, 1961-, -2016, fl. 20... - 02:39 PM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- Now the buttons are removed and add and delete is moved to the context menu. If a taxon node is selected the specimen...
- 02:35 PM bug #8783 (Resolved): Massive Heap consumption in server instance opening the Description-Matrix editor
- This seems to be fixed.
- 01:13 PM feature request #9031 (Closed): Adapt CdmLightExport to new TaxonNode.status
- Currently we have boolean columns "unplaced" and "excluded". Instead we should have the 1 status column which may hav...
- 12:37 PM Revision da898043 (cdm-dataportal): ref #9010 taxon node status display: test for synonmy page
- 12:14 PM feature request #9005 (In Progress): Make the TaxonNode flags alternatives and change excluded notes to status notes
- Renamed excludedNote -> statusNote
- 11:56 AM Revision bd56cbc1 (cdm-dataportal): ref #9010 taxon node status display for taxon pages with tests
- 11:48 AM feature request #9009: Add structure to store media metadata
- as size information like width and height is already stored in MediaRepresentationPart it is not necessary to store s...
- 11:42 AM feature request #8802 (Resolved): Implement flowering period for Flora of Cyprus
- 11:40 AM task #8853 (Closed): Import Aizoaceae from Kew World Checklist to Caryo spp
- 11:40 AM feature request #9018 (Closed): Import Casearia
- 11:37 AM task #9030 (Closed): Import flowering periods for Cyprus
- 11:28 AM bug #8964 (Resolved): Improve label for homonym relationships
- Update script was added
- 11:27 AM feature request #9026 (Resolved): Implement Feature.supportedDataTypes as EnumSet
- 11:27 AM bug #8752 (Worksforme): Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset
- I could not reproduce this problem, so I close this with worksforme
- 11:07 AM Revision 6fcdf7cc (taxeditor): ref #9029: do not add specimen in long running task to avoid description duplicate - continue
- 10:23 AM bug #8753 (Closed): EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- 10:21 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- please review.
- 10:16 AM Revision dac4b16b (taxeditor): ref #9029: adapt character matrix to dtos
- 09:07 AM Revision c27c9ede (cdmlib): ref #9029: avoid description duplicates
- 09:04 AM bug #9029 (Closed): Adapt character matrix to using dtos instead of whole cdm entities
- The character matrix uses only wrappers collecting the cdm entities used for a matrix row. This should be changed to ...
05/25/2020
- 03:50 PM Revision 02d289c7 (taxeditor): ref #7189 improving & cleaning up size calculation of login dialog - cleaning up
- 02:42 PM Revision 91736608 (taxeditor): ref #7189 improving & cleaning up size calculation of login dialog
- 01:35 PM Revision da48381e (cdmlib): updating surefire plugin an attempt to make build full utf-8
- 08:58 AM bug #9028 (New): Endless loop when opening the context menu of name facts
- Hallo,
beim Versuch, ein Name Fact einzugeben, nach der Inserierung des Factual Data Sets, beim Aufruf des Kontextme...
05/24/2020
- 04:37 PM feature request #9027 (Closed): Implement Feature.availableFor
- This should be implemented as EnumSet. It allows to distinguish if a Feature is available for Taxon, TaxonName and/or...
- 04:32 PM feature request #9026 (Closed): Implement Feature.supportedDataTypes as EnumSet
- 04:05 PM Revision 86d88e9a (cdmlib): ref #9014 parse "bis" in test (not final version yet) for ", n.s.,"
- 03:57 PM Revision b831705b (cdmlib): cleanup
- 03:55 PM Revision 50e1dca1 (cdmlib): ref #9014, ref #8996 parse Russian series
- 03:55 PM Revision 90170ac3 (cdmlib): cleanup
- 03:55 PM Revision 668d3638 (cdmlib): cleanup
05/20/2020
- 03:29 PM bug #7189 (Feedback): Taxeditor connect dialog high-dpi suport
- this issue is mainly fixed. Only the width of the comboboxes is a bit too wide.
**I left inactivated lines comment... - 03:22 PM bug #7189 (In Progress): Taxeditor connect dialog high-dpi suport
- 03:24 PM Revision f919df55 (taxeditor): ref #7189 Connect dialog resizable and allowing for automatic size calculation
- 02:50 PM feature request #9025 (Resolved): allow for creating a new schema in empty dbs via the remote login dialog
- Applied in changeset commit:taxeditor|1e4ec948da72558d39ffdd88c9bcbadd518ba7e5.
- 02:48 PM feature request #9025 (Closed): allow for creating a new schema in empty dbs via the remote login dialog
- this is a followup ticket to #9023.
The remote login dialog should set the "cdm.forceSchemaCreate" option for a db... - 02:50 PM Revision 1e4ec948 (taxeditor): fix #9025 allow for creating a new schema in empty dbs via the remote login dialog
- 02:26 PM bug #8901: Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
- the deletion of the aggregation description should be fixed, but attention, if the description is referenced in a cdm...
- 02:24 PM Revision 11760c12 (cdmlib): ref #8901: fix removing aggregated descr from dataset and remove it from taxon
- 01:50 PM bug #9024 (New): repeated startups of the managed server eats up harddisk space
- During the startup of the manages cdm server for each startup the cdmlib-remote-webapp.war is extracted the system tm...
- 10:26 AM Revision 3b929c99 (cdmlib): ref #9023 documentation on running the test profile
- 10:22 AM feature request #9023: option to start cdm webapp with hibernate.hbm2ddl.auto = create
- prior running
~~~
mvn package -DskipTests
~~~
is needed - 09:29 AM feature request #9023: option to start cdm webapp with hibernate.hbm2ddl.auto = create
- running the integration tests from the parent project casues probelms:
~~~
mvn integration-test -pl cdmlib-remote... - 09:35 AM Revision 3e46911a (taxeditor): ref #8785: adapt label provider to dto
05/19/2020
- 06:08 PM feature request #9023 (Resolved): option to start cdm webapp with hibernate.hbm2ddl.auto = create
- 05:56 PM feature request #9023 (Closed): option to start cdm webapp with hibernate.hbm2ddl.auto = create
- 05:54 PM feature request #9023 (Resolved): option to start cdm webapp with hibernate.hbm2ddl.auto = create
- Applied in changeset commit:cdmlib|5666c59e03073f5bbc982cb681203fb4ba177946.
- 05:45 PM feature request #9023 (Closed): option to start cdm webapp with hibernate.hbm2ddl.auto = create
- in compliance with the existing start parameter `cdm.forceSchemaUpdate` which can be set as system parameter or Serv...
- 05:54 PM Revision 5666c59e (cdmlib): fix #9023 implementing stratup option cdm.forceSchemaCreate with integration test:
- - CdmDatabaseException as RuntimeException for all sever db connection problems
- web service for CDM Metadata... - 05:10 PM bug #8901 (In Progress): Deleting an aggregated description from a descriptive matrix does not delete the aggregated description itself
- 02:25 PM Revision e692bd79 (cdmlib): remove unused import
- 02:21 PM bug #8783 (In Progress): Massive Heap consumption in server instance opening the Description-Matrix editor
- The implementation for the rowWrappers changed, having a look at the consumption shows a smaller heap (opening the ch...
- 12:53 PM Revision 06affeed (cdmlib): fix taxonnode service
- 12:20 PM feature request #9022 (Closed): Implement lifespan for Person Details View
- Needed for internal and external data validation
- 12:16 PM Revision fd711754 (taxeditor): ref #8785: update descriptions in description list after merge
- 12:12 PM Revision 7f90724d (cdmlib): ref #8785: adapt descriptionDto
- 09:34 AM bug #9021: Feedback for missing rights on TaxonNode missing
- Andreas Kohlbecker wrote:
> Das müsste ja für jede View gesondert angezeit werden.
>
> Wie wäre es mit einem "Bar...
05/18/2020
- 11:19 AM bug #9021: Feedback for missing rights on TaxonNode missing
- Das müsste ja für jede View gesondert angezeit werden.
Wie wäre es mit einem "Bar" ganz oben in einer jeden View m... - 10:55 AM bug #9021 (New): Feedback for missing rights on TaxonNode missing
- AK:
Leider ließ sich der NameEditor auch nach längeren warten nicht scrollen. Auch in anderen Situationen gab es sel...
05/15/2020
- 04:57 PM bug #9020 (Resolved): add default role Allow_for_all_taxa (TAXONNODE.[CREATE,READ,UPDATE,DELETE])
- Applied in changeset commit:cdmlib|e367ce34f9f5f55f92e3acb2d8c58286d6406dc0.
- 04:45 PM bug #9020 (Closed): add default role Allow_for_all_taxa (TAXONNODE.[CREATE,READ,UPDATE,DELETE])
- The role to edit all taxa (taxon nodes) should be provided as a default rule.
Without any default rule containig any... - 04:56 PM Revision e367ce34 (cdmlib): fix #9020 adding default role Allow_for_all_taxa
- 04:32 PM bug #9019 (New): [Unknown Mozilla path (MOZILLA_FIVE_HOME not set)]
- I don't remember in which situation this happened, but I had this exception two times today during the tutorial sessi...
- 01:48 PM Revision 5ba9a6c7 (taxeditor): ref #8785: minor
- 12:18 PM Revision b7c97484 (taxeditor): fix #8988: add browse button to doi field
- 12:17 PM bug #8998 (Resolved): Terms created by abcd import should always be part of a vocabulary
- yes this should be fixed.
- 12:16 PM feature request #8988: Add link button to DOI field for references
- please review
- 12:16 PM feature request #8988 (Resolved): Add link button to DOI field for references
- Applied in changeset commit:taxeditor|b7c97484966f25da85dccb0e229629e31959bbaa.
- 11:48 AM bug #9012: Taxon Navigator does not refresh after moving a taxon between classifications
- I move that to 5.16 because there are too many tickets belonging to the additivity sprint.
- 11:45 AM Revision f2ac0034 (taxeditor): ref #8785: move add and delete specimen to menu and operations not saved directly but when editor is saved
- 11:40 AM Revision 89b2d0e7 (cdmlib): ref #8785: dtos for character matrix should not contain cdm objects
05/14/2020
- 05:35 PM Revision fb7aa32c (cdmlib-apps): ref #9018 Casearia import
- 05:33 PM feature request #9018 (Closed): Import Casearia
- 05:30 PM Revision c168a618 (cdmlib-apps): cleanup
- 05:29 PM Revision 95fb00f9 (cdmlib-apps): ref #8996 import Uzbekistan taxonomy (first version)
- 03:52 PM task #9017: Update image link for FoG Willing images
- Hallo Dominik,
das Update scheint geklappt zu haben. Vielen Dank für die Hilfe.
Ich habe ein bisschen gesucht u... - 03:00 PM task #9017: Update image link for FoG Willing images
- For updating the full image
~~~ sql
UPDATE MediaRepresentationPart
SET uri = CONCAT(REPLACE (uri,
'http://ww2.... - 02:39 PM task #9017: Update image link for FoG Willing images
- Medium size images should be fixed by
~~~ sql
UPDATE MediaRepresentationPart
SET uri = CONCAT('https://pictures.... - 02:37 PM task #9017 (Resolved): Update image link for FoG Willing images
- 12:48 PM bug #9012: Taxon Navigator does not refresh after moving a taxon between classifications
- we may move to next milestone if this is difficult to fix
- 12:15 PM bug #9016 (Closed): Adding specimen without field unit fails
- Sometimes specimen missing a field unit for example "[illustration] unnumbered figure in Weingart - Kakteenkunde: 14....
- 11:02 AM bug #9015 (Resolved): Comparator for Character Matrix creates strange result
- When one higher taxon has computed (aggregated) description and another higher taxon has no aggregated description th...
- 08:50 AM bug #9013: Problems in TaxonNode Dialog
- fixed with the last commit, please review.
- 08:44 AM bug #9013 (Resolved): Problems in TaxonNode Dialog
- Applied in changeset commit:taxeditor|c8d6ab3c6fc52b6700ae4e93c1f8f5bb5bf0015a.
- 08:30 AM Revision c8d6ab3c (taxeditor): fix #9013: fix NPE when creating root taxon and NPE when changing taxon in taxonnode wizard
- 01:28 AM task #9014 (In Progress): Unparsable name strings
- Hybrids with space behind hybrid sign (from Caryophyllaceae import):
Scleranthus × conocephalus Rchb. in Oesterr. ... - 12:58 AM feature request #9003 (New): Find suitable symbols for excluded, unplaced, placement doubtful (dataportal)
- I think I created this ticket because it is not possible to add 2 assignees and 2 categories to a ticket. As it is a ...
05/13/2020
- 08:49 PM feature request #8464: Make AuthorityBases unique
- Maybe this is a simple index size problem. During an import I got
~~~
20:20:05,140 ERROR SchemaExport:484 - HHH0... - 05:57 PM bug #9013 (Closed): Problems in TaxonNode Dialog
- NPE when changing the taxon in taxonnode dialog:
~~~
last remote method : http://localhost:8080/remoting/common.s... - 05:39 PM bug #9012 (Worksforme): Taxon Navigator does not refresh after moving a taxon between classifications
- I moved a taxon to a new and completely empty classification. The display of the navigator did not change. Reopening ...
- 05:00 PM feature request #9011 (New): Improve display of non taxon names in search results
- Walter suggested:
When display of the classification for a name is deactivated non-taxon names are no longer dis... - 04:21 PM feature request #9003 (Feedback): Find suitable symbols for excluded, unplaced, placement doubtful (dataportal)
- 04:20 PM feature request #9003: Find suitable symbols for excluded, unplaced, placement doubtful (dataportal)
- in #9002 it is requested to use the same symbols in the dataportal as in the taxeditor. So this ticket is kind of nee...
- 04:20 PM feature request #9010 (Closed): Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
- Suitable symbols are to be defined in #9002 (duplicated by #9003)
**TODO:**
* Show the taxon node status excl...
05/12/2020
- 03:19 PM feature request #5942: Advanced Search filter to exlude Distributions with status absent
- As this is an important feature for E+M (and other treatments) I suggest to move this ticket to 5.16
- 03:18 PM feature request #5942: Advanced Search filter to exlude Distributions with status absent
- I agree (as long as there is a one button click to include all non-absent status because otherwise the list of status...
- 01:22 PM feature request #5942: Advanced Search filter to exlude Distributions with status absent
- Andreas Kohlbecker wrote:
> The original requirement as still reflected by the subject of this ticket is a special c... - 01:21 PM feature request #5942: Advanced Search filter to exlude Distributions with status absent
- The original requirement as still reflected by the subject of this ticket is a special case of a general filter for d...
- 01:16 PM feature request #5942: Advanced Search filter to exlude Distributions with status absent
- Hallo,
man sollte im Euro+Med-Portal bei der advanced search unbedingt auch nach Status suchen/filtern können. Es ...
05/11/2020
- 05:02 PM feature request #9009 (Closed): Add structure to store media metadata
- Media files can contain metadata (Exif, IPCT, PhotoshopMetadata, etc). The Cdm needs to be able to store data extract...
- 04:12 PM task #9008 (Closed): Add chapter "Taxonomic concepts and source citations in the EDIT Platform" to documentation "Manual-EDIT-Platform"
- Der text stammt aus dem Nepenthes-Artikel in Willdenowia - https://bioone.org/journals/willdenowia/volume-48/issue-3/...
- 01:20 PM Revision 1a4699cd (taxeditor): adding missing dependencies for kml and iiif
- 08:30 AM Revision 3913738e (taxeditor): ref #8753: add changes in EditorUtil for closing descriptive dataset editors
- 08:26 AM Revision f3d6cef7 (taxeditor): ref #8753: add IDescriptiveDatasetEditor
05/08/2020
- 01:38 PM bug #9007 (Closed): Enable i18n support for media description UI
- Currently it shows only English/Default language. If a description is stored in another language this text is not vis...
- 01:01 PM Revision 1f13376b (cdmlib-apps): cleanup
- 01:01 PM Revision 1a53e0b8 (cdmlib-apps): ref #7075 improve language handling Flora of Greece image import
- 12:52 PM Revision b20994d5 (cdmlib): ref #7075 improve language handling and clean up for MediaExcelImport
05/07/2020
- 06:25 PM feature request #9006 (New): Check basionym/replaced synonym relations if a synonym is removed from a homotypic group
- When a synonym is removed from a homotypic group it may still have basionym or replaced synonym relations to names in...
- 04:31 PM bug #8753: EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- This problem was different as I thought before, but now it does not appear anymore with the dump from #8752.
- 04:09 PM bug #8753 (Resolved): EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- This problem is caused because of a still available selection of the descriptive dataset. This is solved by setting t...
- 11:17 AM bug #8753: EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- Katja Luther wrote:
> this seems to be solved with fixing the deletion of descriptive datasets. I could not reproduc... - 04:27 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- 11:33 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- mail to AM and NK:
Hallo ihr beiden,
ich bin gerade dabei die Character Matrix Tickets ab zu arbeiten. Ein Punk... - 04:10 PM Revision 0ee41c8b (taxeditor): ref #8753: set selection to null after deleting descriptiveDataSet
- 01:41 PM Revision 1aad0d60 (cdmlib): ref #8785: deleteDescriptiveDataset as long running task
- 11:44 AM Revision 5982fda4 (taxeditor): ref #8785: add menu item for remove desc and remember this desc and remove while saving
- 11:39 AM Revision bdc9ce9d (cdmlib): ref #8785: add method to remove a list of descriptions from a descrciptive dataset
- 10:59 AM Revision cae389f9 (cdm-dataportal): comment on specimen media types
- 10:39 AM Revision 23925f2c (cdm-dataportal): gitignore
05/06/2020
- 01:06 PM Revision 54d8d17d (cdmlib): fix #8991 change flowering season to flowering period
- 01:06 PM Revision 6cdffae2 (cdmlib): cleanup
- 11:59 AM feature request #9005 (Closed): Make the TaxonNode flags alternatives and change excluded notes to status notes
- Currently we have unplaced, excluded and placement doubtful as flags.
It is expected that these neve occurr in par... - 11:42 AM feature request #9004 (Closed): Make TaxonNode.referenceForParentChildRelation an OriginalSource and rename it to (placement)source
- ... and make it an OriginalSource instead of ref+detail.
Later also change accordingly in TaxEditor => new ticket ... - 11:25 AM feature request #9003 (Duplicate): Find suitable symbols for excluded, unplaced, placement doubtful (dataportal)
- this duplicates #9002 but for the dataportal part.
For description see there. - 11:24 AM feature request #9002 (New): Find suitable symbols for excluded, unplaced, placement doubtful
- for TaxonNodes (... and maybe also for doubtful, status unknown and published from Taxon(Base) ).
These symbols sh... - 10:23 AM feature request #9001 (New): Add ROR identifier to identifier types
- https://ror.org/
- 10:15 AM bug #8753: EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- Andreas K., can you please decide if this needs to be reviewed as you reported the ticket?
If not necessary we shoul... - 09:20 AM bug #8753 (Worksforme): EagerLoadingException on opening Character Tree Editor after deleting all Desciptive Data Sets
- this seems to be solved with fixing the deletion of descriptive datasets. I could not reproduce this exception anymore.
- 09:52 AM task #6981: Migrate to Java 11
- Another interesting read in this context : https://dzone.com/articles/guide-for-supporting-multiple-versions-of-java-...
- 09:38 AM bug #9000 (Closed): UriUtils: HttpClient has ssl error connecting to pictures.bgbm.org
~~~
[cyprus] 09:34:52,961 ERROR [qtp1644443712-27][eu.et.cd.re.co.ii.ManifestController] - Problem while loading...- 09:31 AM Revision 09305c9e (cdmlib): setting content-type for iiif manifest controller
- 09:31 AM Revision c83d415f (cdmlib): ref #6113 improving unit title in occurrences KML
- 09:31 AM Revision d4782129 (cdmlib): Adding metadata loading error details to iiif manifest
- 08:27 AM bug #8999: Verbatim date not persisted for books
- please review
- 08:27 AM bug #8999: Verbatim date not persisted for books
- This problem was caused by missing handling of events in verbatim field. This is fixed now.
- 08:24 AM bug #8999 (Resolved): Verbatim date not persisted for books
- Applied in changeset commit:taxeditor|98ac1b05a056526ef81cf11677300b38beb02bf9.
- 08:22 AM Revision 98ac1b05 (taxeditor): fix #8999: fix persisting of verbatim date
05/05/2020
- 10:22 PM bug #8999 (Closed): Verbatim date not persisted for books
- WGB:
in einem Buch (konkret hier: Hartmann, H. E. K., Illustrated Handbook of Succulent Plants: Aizoaceae F-Z. 200... - 03:34 PM feature request #8883: additional media list services as iiif manifest service
- moving to next milestone and lowering priority.
The fsi image viewer is only used in the taxon page so there switc... - 03:13 PM bug #8754 (In Progress): DescriptionElements are not deleted with the Descriptive Data Set
- the deletion of larger datasets takes some time, therefore it is implemented as a long running task now. Need to test...
- 10:31 AM bug #8754 (Resolved): DescriptionElements are not deleted with the Descriptive Data Set
- A new method for deletion of descriptive datasets are implemented, which uses DescriptionService.deleteDescription() ...
- 03:01 PM bug #8998: Terms created by abcd import should always be part of a vocabulary
- Is this fixed and should be reviewed?
- 03:01 PM bug #8998: Terms created by abcd import should always be part of a vocabulary
- AM:
in algaterra_new gibt es eine Reihe DNA Marker Terme (z.B. „18S V4 rRNA“). Diese sind alle am 28.2.2020 erstel... - 11:49 AM bug #8998 (Resolved): Terms created by abcd import should always be part of a vocabulary
- In abcd import dnaMarker are created if not existing, they are not added to a vocabulary, but should. The vocabulary ...
- 01:58 PM bug #6282 (Rejected): FSI image viewer not working with https
- no longer needed now that we integrated the universal viewer
- 01:53 PM feature request #8968: filter Bulk editor for created by
- @ Katja: Services müssten doch alle verfügbar sein?! Kannst Du den Arbeitsaufwand für eine Implementierung abschätzen...
- 12:16 PM feature request #8888 (Closed): responsive width for universal viewer
- 12:16 PM feature request #8888 (Resolved): responsive width for universal viewer
- Applied in changeset commit:cdm-dataportal|2020828c0746e826bc31cb010b4c17c4bac5eb94.
- 12:15 PM Revision 2020828c (cdm-dataportal): fix #8888 adapting uv width to parent div width
- 11:40 AM Revision dec805d6 (cdmlib): fix dnaMarker creation, add to vocabulary
- 11:13 AM Revision 6ec49f60 (cdm-vaadin): cleaning up code and fixing typo in term title
- 11:13 AM Revision d0618dd7 (cdm-vaadin): ref #8986 setting up maven-enforcer-plugin with fail=false
- 10:56 AM bug #8752 (In Progress): Matrix Editor: Can fail showing all SpecimenDescriptions in the dataset
- I could not reproduce this problem, sometimes an exception is thrown because the creation of the row failed, then the...
- 10:26 AM Revision af46e1a1 (cdmlib): ref #8754: implement delete method for descriptiveDataSet
- 10:18 AM feature request #8997 (New): Improve display of classifications and non taxon names in search results
- Walter suggested:
Im Suchresultat wird nach dem Namen immer Leerzeichen Doppelpunkt Leerzeichen Klassifikationsnam... - 08:25 AM Revision f8a489fd (cdm-dataportal): removing unused js library reference
- 12:50 AM task #8996 (Closed): Import Flora of Uzbekistan taxa
- 12:41 AM Revision e61edee4 (cdmlib-apps): ref #8978 adapt app-import to StatisticalMeasurementValue.value as BigDecimal
05/04/2020
- 06:53 PM bug #8995 (New): Guarantee a term always has a vocabulary
- Some production databases do have terms which are not attached to vocabularies.
This has multiple reasons.
In gen... - 06:31 PM Revision 8370de0b (cdm-vaadin): cleanup
- 05:08 PM bug #8754: DescriptionElements are not deleted with the Descriptive Data Set
- Deleting the descriptive dataset calls the delete method of IdentifiableServiceBase, but should be an extra delete me...
- 05:04 PM bug #8806 (In Progress): Multiple representations problem on saving Desriptive Data Set
- Could not reproduce the problem anymore, but needs further testing.
- 02:18 PM bug #8806: Multiple representations problem on saving Desriptive Data Set
- this seems to be related to open the same descriptive dataset in descriptive dataset editor and in character matrix. ...
- 05:02 PM Revision defea9e9 (taxeditor): ref #8806: bind session to matrix editor when opening and focus
- 03:56 PM bug #8994: universal image viewer fails loading libs when clean urls is disabled
- check if it is also working on the test server
- 03:56 PM bug #8994 (Resolved): universal image viewer fails loading libs when clean urls is disabled
- Applied in changeset commit:cdm-dataportal|6c1a67120fd6c9fc5076137ff183a57f01e37827.
- 03:27 PM bug #8994 (In Progress): universal image viewer fails loading libs when clean urls is disabled
- with `clean-urls = false`, this file is found
http://edit.test/d7/cyprus/sites/cyprus/modules/cdm_dataportal/js/u... - 03:23 PM bug #8994 (Closed): universal image viewer fails loading libs when clean urls is disabled
- * This url works: http://edit.test/d7/cyprus/cdm_dataportal/taxon/2e58b1ab-03a9-4693-bcec-3b8e7f04b572/images
* this... - 03:56 PM Revision 6c1a6712 (cdm-dataportal): fix #8994 adapting universalviewer_path according to clean urls usage
- 03:16 PM bug #8900 (Closed): Layout issues with new image viewer
- 03:15 PM bug #8900 (Resolved): Layout issues with new image viewer
- Applied in changeset commit:cdm-dataportal|16f4ad91e5dc8bac561e7bee5bc11c4041676281.
- 03:15 PM Revision 16f4ad91 (cdm-dataportal): fix #8900 setting UV width from parent div
- 01:39 PM bug #8662: "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
- now the menu item is available only if the selection is a taxon node, so it should show up, only when the node can be...
- 01:28 PM bug #8662 (Resolved): "Remove Taxon" in DescriptiveDataSetEditor should only be visible if taxon is selected
- Applied in changeset commit:taxeditor|b529af0445dcd7025081ff2c1c40926a29f9d79c.
- 01:29 PM Revision b529af04 (taxeditor): fix #8662: adapt canExecute to show remove taxon only when top level node is selected
- 12:12 PM feature request #4837 (Closed): responsive layout & theme
- the review for this ticket is over due since 4 years.
I am closing the issue now. - 11:50 AM feature request #4488 (Closed): Specimen data points in map should show FieldUnit information
- 11:50 AM feature request #6113 (Closed): webservice to expose FieldUnits related to a Taxon or TaxonName as KML and/or GML
- ticket complete, I think reviewing by someone else is not needed, therefor I am closing this ticket directly.
- 11:48 AM feature request #8972 (Closed): integrate kml layers into map viewer
- no problems found in the flora cuba which could be caused by the change to the `zoomToClosestLevel = false` setting....
- 11:41 AM Revision a25116e0 (cdm-dataportal): fixing broken font awesome loading icon in map
- 11:40 AM Revision 199e1e3d (cdm-dataportal): removing unused js library reference
- 10:44 AM Revision 1c376cd7 (cdmlib): cleanup classification controller
- 10:41 AM Revision 39f8b71e (cdmlib): ref #1447 implement getNameCache
- 10:29 AM Revision 2767101c (cdmlib): cleanup
- 10:26 AM feature request #8993 (New): suppress the map in name pages and registration pages if there are no locations to display:
- copied from #8972
suppress the map in name pages and registration pages if there are no locations to display
Fo... - 10:20 AM Revision 43c5bf8b (cdm-dataportal): ref #8972 refactoring: moving map compose method into maps.inc and simplifying code
- 09:59 AM bug #8816 (Feedback): NoSuchElementException during adding Specimens to Matrix Editor
- I cann't reproduce this exception, could you remember what you did before?
- 09:31 AM feature request #8855: Show error radius in EDIT portal
- Super! Danke & das hilft allen Projekten, die Karten zeigen!
- 09:23 AM feature request #8855 (Closed): Show error radius in EDIT portal
- Fully implemented, please see http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/registration/http...
- 09:29 AM bug #3169 (Rejected): Maps, Specimens: error openlayers.js due to point map in portal
- this issue is for sure no longer relevant as we switched to a completely different technology for showing specimen ma...
- 08:46 AM task #8840: Display identifiers in the dataportal
- Hallo,
zu diesem Punkt:
Also consider possibility (configurable) to display WFO- and IPNI- Name Identifiers as ... - 08:41 AM task #8992 (New): Configure Apache to treat dataportal URLs as case insensitiv
- This should be configurable by using the spelling module:
~~~
LoadModule speling_module modules/mod_speling.so
...
04/30/2020
- 11:53 AM bug #8903 (Resolved): Remember expansion state in factual data view
- This should be fixed now. Please review.
- 11:52 AM Revision 39fb1444 (taxeditor): ref #8903: fix remember expand level in factual data view
- 11:40 AM feature request #8991 (Resolved): Add feature "Flowering Period"
- Applied in changeset commit:cdmlib|dfdb2bfddf5df2fa7b0ba256c6ec0779aafd5f9a.
- 11:37 AM feature request #8991 (Closed): Add feature "Flowering Period"
- 11:39 AM Revision dfdb2bfd (cdmlib): fix #8991 add Feature flowering season
- 11:25 AM Revision 9287a99d (cdmlib): minor on ConcurrentSessionTest.xml
- 11:21 AM Revision f9956144 (cdmlib): cleanup
- 10:17 AM feature request #8990 (Closed): Implement flowering periods (temporal facts) in TaxEditor
- This includes
* ~~a new field "supportsTemporalData" in the Feature details view~~
* ~~a new details view for th... - 10:16 AM feature request #8989 (Closed): Implement flowering periods (temporal facts) in dataportal
- For the beginning a text based representation should be enough.
Later a visual representation like in http://flora...
04/29/2020
- 03:57 PM feature request #8972 (Resolved): integrate kml layers into map viewer
- this is complete now. BUT it was necessary to set `zoomToClosestLevel = false`
Which as been introduced for #5683 wi... - 03:16 PM feature request #8972 (In Progress): integrate kml layers into map viewer
- 03:54 PM feature request #8988 (Closed): Add link button to DOI field for references
- Same as for URL field
- 03:53 PM Revision 108f1865 (cdm-dataportal): ref #4257, ref #8972 setting zoomToClosestLevel = false to prevent from hidden features in KML layers
- 03:30 PM feature request #4488: Specimen data points in map should show FieldUnit information
- this is now complete
- 03:28 PM Revision d5c5cd81 (taxeditor): fix #8954: fix expansion state
- 03:27 PM bug #8954: Details and Supplemental Data View do not save the expansion state of sections again
- this should be fixed, please review.
- 03:27 PM bug #8954 (Resolved): Details and Supplemental Data View do not save the expansion state of sections again
- Applied in changeset commit:taxeditor|d5c5cd81ed72f663241798765e14082cb3ea522c.
- 03:25 PM feature request #4257 (Closed): specimen map should zoom to area of distribution
- 03:23 PM Revision 64f6df71 (cdm-dataportal): ref #4257, ref #8972 zooming map to kml layer feature bounds
- 02:31 PM feature request #8978 (Resolved): Implement measurement values as BigDecimal
- 02:06 PM Revision 34dba7f7 (taxeditor): fix #8958: add additional rows to reference bulk editor - continue
- 02:05 PM feature request #8958: Add publication year, inReference (journal), and URI to reference bulk editor
- please review
- 02:00 PM feature request #8958 (Resolved): Add publication year, inReference (journal), and URI to reference bulk editor
- Applied in changeset commit:taxeditor|1391e8f98560e8415f6b48b0476a45ef1b6b94bb.
- 02:02 PM Revision 1391e8f9 (taxeditor): fix #8958: add additional rows to reference bulk editor
- 01:53 PM Revision 7844642a (cdm-dataportal): ref #8972 switching type_designations_maps to kml
- 01:52 PM Revision a0880292 (cdmlib): ref #6113 more kml web services and a missing name service method
- 12:08 PM bug #8969 (Resolved): Multiple deduplications are not executed
- 12:08 PM bug #8969 (New): Multiple deduplications are not executed
- The first solution is implemented, please review.
- 11:36 AM bug #8969 (Resolved): Multiple deduplications are not executed
- Applied in changeset commit:taxeditor|170f6932192925c4e5671309e2da88d4b61cd3f3.
- 11:58 AM Revision ef1e39dd (taxeditor): fix #8969: externalize strings
- 11:57 AM Revision 7ee568a3 (cdmlib): ref #8986 solving atrifact version conflict
- 11:45 AM task #8986 (Closed): use Maven Enforcer plugin to check for dependency version conflics and to enforce the minimum maven version
- done for all listed projects.
cdm-vaadin still has conflicts but this will be handled in another ticket: #8987 - 11:39 AM task #8986 (In Progress): use Maven Enforcer plugin to check for dependency version conflics and to enforce the minimum maven version
- 10:22 AM task #8986 (Closed): use Maven Enforcer plugin to check for dependency version conflics and to enforce the minimum maven version
Links:
* http://maven.apache.org/enforcer/maven-enforcer-plugin/index.html
* Usage: http://maven.apache.org...- 11:44 AM task #8987 (New): manage dependencies to resolve version conflicts
- see the report in the output of `mvn validate` for existing conflicts
The `fail=true` for the Maven Enforcer plug... - 11:38 AM Revision ba1a280e (cdmlib): ref #8986 maven-enforcer-plugin: fail=true and re-enabling maven version check
- 11:37 AM Revision 79f4724d (cdmlib): ref #8986 maven-enforcer-plugin: fail=true and re-enabling maven version check
- 11:34 AM Revision 170f6932 (taxeditor): fix #8969: add third button for continue without saving
- 11:34 AM Revision bdda8f90 (cdm-webapp): ref #8986 setting up maven-enforcer-plugin with fail=true
- 11:13 AM Revision c5d02ae1 (cdmlib): ref #8986 maven enforcer plugin: disabling maven version test
- 11:09 AM Revision 97b44db6 (cdmlib): ref #8986 managing all conflicting artifact versions
- 10:26 AM Revision ca837203 (cdmlib): ref #8986 setting up maven-enforcer-plugin for all cdmlib modules
- 09:36 AM Revision fcdb23af (cdmlib): ref #6113, ref #8985 adding replacement OPTIONS service only for the KML controller
- 09:34 AM task #8985 (New): Enable the general controller for OPTIONS requests
- The `eu.etaxonomy.cdm.remote.controller.OptionsController` had to be disabled and was replaced by `eu.etaxonomy.cdm.r...
04/28/2020
- 05:40 PM Revision 30ae270f (cdmlib): ref #6113 tempororily disabling the OptionsController
- 05:10 PM Revision 98fe0c12 (cdmlib): ref #6113 fxing NPE
- 05:01 PM Revision 09b9fc11 (cdmlib): excluding org.eclipse.emf dependencies
- 05:00 PM Revision 57ece50a (cdmlib): adding maven-enforcer-plugin commented
- 02:21 PM bug #8328 (Closed): Unpublished record visible in Portal if related name is published
- Checked in both portals.
Navicula insula, Ulva olivacea.
Function tested with Basionym (publ.), 1. new combination ... - 02:09 PM bug #8984 (New): Registration search result list: Format display of two type specimens
- This is related to the Registration search result list:
Description: 1 type is displayed and a dot is added by the... - 01:51 PM feature request #8980: Type specimen editor, collection data field misused by users
- Please check wording.
- 11:46 AM feature request #8983: authors and team in combobox better distinguishable
- estimate effort first!
- 11:45 AM feature request #8983 (New): authors and team in combobox better distinguishable
- we discussed two options:
1. show all atomized data in the select list
2. show all atomized data when an item is ... - 10:29 AM Revision 1ef5371d (cdmlib): using embedded jetty in launcher
- 10:28 AM Revision dfe8c2de (cdmlib): ref #6113, ref #4488 de-duplicating field units
- 10:22 AM Revision 2871509d (cdm-dataportal): ref #8972, ref #8855, ref #4488 modified representation of field units in balloons
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