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feature request #9010

Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page

Added by Andreas Kohlbecker 5 months ago. Updated 3 months ago.

Status:
Closed
Priority:
Highest
Category:
cdm-dataportal
Target version:
Start date:
05/13/2020
Due date:
% Done:

100%

Severity:
normal

Description

Suitable symbols are to be defined in #9003 and #9002

TODO:

  • Show the taxon node status excluded, unplaced, placement doubtful at the top of the taxon page
  • Show the taxon node in the taxon tree
  • I case there are multiple taxon nodes for one taxon the status information for all nodes should be shown by also mentioning the classification if (see #8997)
  • add a configuration option to the admin section layout > taxon to allow disabling the taxon node status
  • add status note if available
  • add TaxonNode.source if available

Related issues

Related to Edit - feature request #9003: Find suitable symbols for excluded, unplaced, placement doubtful (dataportal) Duplicate 05/06/2020
Related to Edit - feature request #8997: Improve display of classifications and non taxon names in search results New 05/05/2020
Related to Edit - feature request #9042: EnumTerm symbol and message in web service response New 05/28/2020
Related to Edit - feature request #9005: Make the TaxonNode flags alternatives and change excludednotes to status notes Closed 05/06/2020
Related to Edit - bug #9102: taxonNode status icon breaks sort order in taxontree Closed 06/25/2020

Associated revisions

Revision bd56cbc1 (diff)
Added by Andreas Kohlbecker 4 months ago

ref #9010 taxon node status display for taxon pages with tests

Revision da898043 (diff)
Added by Andreas Kohlbecker 4 months ago

ref #9010 taxon node status display: test for synonmy page

Revision 11accf4d (diff)
Added by Andreas Kohlbecker 4 months ago

ref #9010 adapting tests to modified taxon node status model

Revision 81f313f0 (diff)
Added by Andreas Kohlbecker 4 months ago

ref #9010 taxon node status display - adaptiong code to model change

Revision 9282ac6e (diff)
Added by Andreas Kohlbecker 4 months ago

ref #9010 showing taxon node status symbols in the taxon tree

Revision 64aca903 (diff)
Added by Andreas Kohlbecker 4 months ago

ref #9010 showing taxon node status symbols in the taxon tree - adding space

Revision fe169cb6 (diff)
Added by Andreas Kohlbecker 4 months ago

ref #9010 taxon node status only for taxon general and synonymy tab

Revision 31bb0452 (diff)
Added by Andreas Kohlbecker 4 months ago

ref #9010 changing label to 'Placement status'

Revision de12b95b (diff)
Added by Andreas Kohlbecker 4 months ago

ref #9010 changing label to 'Placement status' - adapting tests

Revision 95e00758 (diff)
Added by Andreas Kohlbecker 3 months ago

ref #9010 showing status notes, source and annotations

Revision 178d1ae6 (diff)
Added by Andreas Kohlbecker 3 months ago

ref #9010 solving some problems regarding sources and annotations for TaxonNodes

Revision ff28ae45 (diff)
Added by Andreas Kohlbecker 3 months ago

ref #9010 proper initialization of TaxonNode.source

History

#1 Updated by Andreas Kohlbecker 5 months ago

  • Related to feature request #9003: Find suitable symbols for excluded, unplaced, placement doubtful (dataportal) added

#2 Updated by Andreas Kohlbecker 5 months ago

  • Subject changed from Diasplay taxon node status excluded, unplaced, placement doubtful (dataportal) in the taxon page to Display taxon node status excluded, unplaced, placement doubtful (dataportal) in the taxon page

#3 Updated by Andreas Kohlbecker 5 months ago

  • Related to feature request #8997: Improve display of classifications and non taxon names in search results added

#4 Updated by Andreas Kohlbecker 5 months ago

  • Description updated (diff)

#5 Updated by Andreas Kohlbecker 4 months ago

  • Subject changed from Display taxon node status excluded, unplaced, placement doubtful (dataportal) in the taxon page to Display taxon node status excluded, unplaced, placement doubtful (dataportal) in taxon page and taxon tree
  • Description updated (diff)

#6 Updated by Andreas Kohlbecker 4 months ago

#7 Updated by Andreas Kohlbecker 4 months ago

  • Status changed from New to Resolved
  • Assignee changed from Andreas Kohlbecker to Andreas Müller
  • % Done changed from 0 to 50

This is solved, please see the genus Casus and subordinate taxa for examples:

http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/b6abcec5-d58e-4bf1-87c4-f7926525d1a6

#8 Updated by Andreas Müller 4 months ago

In classification tree it looks fine

#9 Updated by Andreas Müller 4 months ago

  • Assignee changed from Andreas Müller to Andreas Kohlbecker

On the taxon page in the tabbed version I would move the text above the tabs (immediately below the title). Now it appears on each tab which is confusing, e.g. if I click on "keys" and get information "placement doubtful" it is strange.

#10 Updated by Andreas Müller 4 months ago

  • Status changed from Resolved to Feedback

"Classificatorical states" should be "Placement status" as "classificatorical" does not seem to be English word (I couldn't find it). Also it is status not state.

#11 Updated by Andreas Müller 4 months ago

  • Related to feature request #9005: Make the TaxonNode flags alternatives and change excludednotes to status notes added

#12 Updated by Andreas Müller 4 months ago

  • Subject changed from Display taxon node status excluded, unplaced, placement doubtful (dataportal) in taxon page and taxon tree to Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note on taxon page
  • Description updated (diff)

I added "show taxon node status note" to the ticket titel as this task is strongly related (see also #9005)

#13 Updated by Andreas Müller 4 months ago

Andreas Müller wrote:

"Classificatorical states" should be "Placement status" as "classificatorical" does not seem to be English word (I couldn't find it). Also it is status not state.

Alternatively we could fully remove the label and use selfexplaining labels for the status: placement doubtful, unplaced and excluded.

#14 Updated by Andreas Kohlbecker 4 months ago

  • Status changed from Feedback to In Progress

Andreas Müller wrote:

On the taxon page in the tabbed version I would move the text above the tabs (immediately below the title). Now it appears on each tab which is confusing, e.g. if I click on "keys" and get information "placement doubtful" it is strange.

We agreed in showing the status label only for the taxon tabs general and synonymy and when the taxon page is tabless

#15 Updated by Andreas Kohlbecker 4 months ago

  • Status changed from In Progress to Closed
  • % Done changed from 50 to 100

All suggested improvements are now implemented.
I've chosen to keep the label and to replace "Classificatorical states" by "Placement status"

#16 Updated by Andreas Müller 4 months ago

  • Status changed from Closed to Feedback

On the above test page I could not find any example with status notes. Is this implemented already? If yes, is there an example/test page?

#17 Updated by Andreas Kohlbecker 3 months ago

  • Status changed from Feedback to In Progress
  • % Done changed from 100 to 40

thank you for pointing this out. I overlooked the additional requirement to show also status notes.

#18 Updated by Andreas Müller 3 months ago

  • Subject changed from Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note on taxon page to Display taxon node status excluded, unplaced, placement doubtful on taxon page and taxon tree and show taxon node status note and taxon node source on taxon page
  • Description updated (diff)

I forgot to mention that also the TaxonNode source should be shown here

#19 Updated by Andreas Kohlbecker 3 months ago

  • Status changed from In Progress to Feedback
  • Assignee changed from Andreas Kohlbecker to Andreas Müller
  • % Done changed from 40 to 50

display of status notes, source and annotations is implemented.

Is there any way to edit source and annotations of taxon nodes via the Taxeditor?

#20 Updated by Andreas Müller 3 months ago

The source can be edited via the taxon node wizard ("placement source") but only reference (and if a new node is created also microreference can be edited). These are stored now as OriginalSource.

Annotations can not be edited in the taxeditor yet, as far as I can see, as the supplemental data view does not work with the wizard.

#21 Updated by Andreas Müller 3 months ago

  • Assignee changed from Andreas Müller to Andreas Kohlbecker

#22 Updated by Andreas Müller 3 months ago

Excluded and unplaced taxa do now appear on the top in the tree. This is unwanted. Excluded and unplaced taxa should always be on the bottom, with first unplaced and then excluded.

#23 Updated by Andreas Kohlbecker 3 months ago

  • Status changed from Feedback to Closed
  • % Done changed from 50 to 100

Andreas Müller wrote:

Excluded and unplaced taxa do now appear on the top in the tree. This is unwanted. Excluded and unplaced taxa should always be on the bottom, with first unplaced and then excluded.

this issue is handled in #9102 and has been solved meanwhile.

#24 Updated by Andreas Kohlbecker 3 months ago

  • Related to bug #9102: taxonNode status icon breaks sort order in taxontree added

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