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task #8840

closed

Display identifiers in the dataportal

Added by Andreas Kohlbecker over 4 years ago. Updated about 2 months ago.

Status:
Closed
Priority:
Highest
Assignee:
Katja Luther
Category:
cdm-dataportal
Target version:
Release 5.43
Start date:
Due date:
% Done:

100%

Estimated time:
Severity:
normal
Tags:
euro+med MCL tettris wfo

Description

identifiers for all cdm types need to be shown (IdentifiableEntity.identifier)

Identifiers exist in Caryophyllales_sp for TaxonName, TaxonBase and SpecimenOrObservationBase.

Also consider transformation of IPNI-LSIDs to identifiers.

Also a link should be shown if available (see #10260).

Note AM: This needs to be configurable by identifier type and/or maybe also by IdentifiableEntitiy subclass type (see also #9539)

Related issues

Related to EDIT - task #8391: Name page shows complete name information (II)In ProgressAndreas Kohlbecker

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Related to EDIT - feature request #7152: Make LSID another Alternative IdentifierNewAndreas Müller

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Related to EDIT - feature request #10050: Add missing functionality for MCL CDM dataportalIn ProgressAndreas Müller

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Related to EDIT - feature request #10260: Add resolve mechanism to (external) identifiersClosedAndreas Müller

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Related to EDIT - feature request #9539: Implement availableFor for ExtensionType, MarkerType, AnnotationType and IdentifierTypeIn ProgressAndreas Müller

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Related to EDIT - feature request #10433: Add Index Fungorum name identifier typeClosedAndreas Müller

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Related to EDIT - feature request #10511: Update script for WFO-ID patternClosedAndreas Müller

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Related to EDIT - feature request #10289: Allow editing urlPattern in IdentifierType in TaxEditorClosedKatja Luther

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Related to EDIT - feature request #10537: Filter dummy WFO-IDs in dataportalClosedAndreas Müller

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Copied to EDIT - bug #10515: Display further identifiers in the dataportal In ProgressKatja Luther

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 #1

Updated by Andreas Kohlbecker over 4 years ago

  • Description updated (diff)
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 #2

Updated by Andreas Kohlbecker over 4 years ago

  • Description updated (diff)
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 #3

Updated by Andreas Kohlbecker over 4 years ago

  • Description updated (diff)
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 #4

Updated by Andreas Müller over 4 years ago

Andreas Kohlbecker wrote:

Also consider transformation of IPNI-LSIDs to identifiers.

Can you explain what is meant by this?

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 #5

Updated by Andreas Müller over 4 years ago

  • Description updated (diff)
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 #6

Updated by Andreas Kohlbecker over 4 years ago

Hallo,

ich wollte noch anmerken, dass mich im Portal eigentlich vor allem auch der Link zum Identifier interessiert. Im Gegensatz zur Suchfunktion (Block, dort Suche nach Namen im Zielsystem) wird hier ja eine kontrollierte Verlinkung (z.B.) eines Namens hergestellt. Bei der Datenhaltung sollte man also vielleicht die Auflösung des Links (also die URL drumherum) mit beim Identifier-Type ablegen, sodass man im Portal den Identifier als Text, als Link, oder als Text mit Link darstellen kann.

Herzlichen Gruß

Walter

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 #7

Updated by Andreas Kohlbecker about 4 years ago

Hallo,

zu diesem Punkt:

Also consider possibility (configurable) to display WFO- and IPNI- Name Identifiers as URLs in the dataportal (wichtig für Caryophyllales, Euro_Med und eventuell Cichorieae).

Das könnte man eventuell ja eher über die Name-Detail Page machen, die mal in der Diskussion war (hatte sich das realisiert? Und wenn ja, wie kommt man an die eigentlich heran?).

Herzlichen Gruß

Walter

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 #8

Updated by Andreas Müller about 4 years ago

  • Related to task #8391: Name page shows complete name information (II) added
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 #9

Updated by Andreas Müller over 3 years ago

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 #10

Updated by Andreas Müller over 1 year ago

  • Subject changed from display identifiers in the dataportal to Display identifiers in the dataportal
  • Assignee changed from Andreas Kohlbecker to Katja Luther

This is also an issue for MCL and the MCL taxon id (#10050)

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 #11

Updated by Andreas Müller over 1 year ago

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 #12

Updated by Andreas Müller over 1 year ago

  • Tags set to MCL
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 #13

Updated by Andreas Müller over 1 year ago

  • Tags changed from MCL to MCL, tettris, euro+med, wfo
  • Target version changed from Unassigned CDM tickets to Release 5.49

This is also relevant for e.g. WFO identifiers in E+M and others.
But be aware that WFO-IDs are name related. MCL IDs are taxon related. However, WFO-IDs should not only be shown on the name pages (which are usually not linked or easy to find but also on the taxon pages.

This could maybe be implemented with the new taxon page DTOs therefore put to current milestone.

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 #14

Updated by Andreas Müller over 1 year ago

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 #15

Updated by Andreas Müller over 1 year ago

  • Description updated (diff)
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 #16

Updated by Andreas Müller over 1 year ago

  • Related to feature request #9539: Implement availableFor for ExtensionType, MarkerType, AnnotationType and IdentifierType added
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 #17

Updated by Andreas Müller over 1 year ago

  • Description updated (diff)
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 #18

Updated by Andreas Müller 8 months ago

  • Target version changed from Release 5.49 to Release 5.42
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 #19

Updated by Andreas Müller 8 months ago

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 #20

Updated by Andreas Müller 6 months ago

  • Target version changed from Release 5.42 to Release 5.49
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 #21

Updated by Andreas Müller 5 months ago

  • Target version changed from Release 5.49 to Release 5.47
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 #22

Updated by Andreas Müller about 2 months ago

  • Related to task #10508: Remaining issues for DTO based taxon page added
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 #23

Updated by Andreas Müller about 2 months ago

  • Status changed from New to In Progress
  • Priority changed from New to Highest
  • % Done changed from 0 to 10

Identifiers are now delivered via the taxon page webservice (currently only wfo-ids).

Example data already exist for integration/reference/Nepenthes gracilis and it's first synonym Nepenthes teysmanniana. (https://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/5d9af5a8-c8ad-45e8-85df-ce6a01011fb9/synonymy)

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 #24

Updated by Andreas Müller about 2 months ago

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 #25

Updated by Andreas Müller about 2 months ago

  • Target version changed from Release 5.47 to Release 5.43
  • % Done changed from 10 to 40

We still need a flag for switching this on and off.

Also need to create follow-up ticket.

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 #26

Updated by Katja Luther about 2 months ago

Andreas Müller wrote in #note-25:

We still need a flag for switching this on and off.

Also need to create follow-up ticket.

The flag is added.

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 #27

Updated by Katja Luther about 2 months ago

  • Related to bug #10515: Display further identifiers in the dataportal added
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 #28

Updated by Katja Luther about 2 months ago

  • Status changed from In Progress to Resolved
  • Assignee changed from Katja Luther to Andreas Müller

The flag for the identifier display is added and the follow up ticket is created, so we can set this ticket as resolved.

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 #29

Updated by Andreas Müller about 2 months ago

  • Related to deleted (bug #10515: Display further identifiers in the dataportal )
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 #30

Updated by Andreas Müller about 2 months ago

  • Copied to bug #10515: Display further identifiers in the dataportal added
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 #31

Updated by Andreas Müller about 2 months ago

  • Related to deleted (task #10508: Remaining issues for DTO based taxon page)
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 #32

Updated by Andreas Müller about 2 months ago

  • Status changed from Resolved to Feedback
  • Assignee changed from Andreas Müller to Katja Luther
  • % Done changed from 40 to 60

I can not switch off the flag. After saving it is still switched on.

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 #33

Updated by Katja Luther about 2 months ago

  • Status changed from Feedback to Resolved

Andreas Müller wrote in #note-32:

I can not switch off the flag. After saving it is still switched on.

This is fixed.

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 #34

Updated by Katja Luther about 2 months ago

  • Assignee changed from Katja Luther to Andreas Müller
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 #35

Updated by Andreas Müller about 2 months ago

  • Status changed from Resolved to Closed
  • Assignee changed from Andreas Müller to Katja Luther
  • % Done changed from 60 to 100
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 #36

Updated by Andreas Müller about 2 months ago

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 #37

Updated by Andreas Müller about 1 month ago

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