Activity
From 05/31/2021 to 06/29/2021
06/29/2021
- 11:04 PM Revision ed5871af (cdmlib): ref #4311 add initials + family default for collectorTitleCache
- 11:02 PM Revision 27d743af (cdmlib): cleanup
- 10:41 PM feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- 10:29 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- It seems to work now.
However, there is another problem now. The protect button is disabled for all titleCache fie... - 10:30 PM feature request #9287: Show term details in details view of term tree editor
- See also #7309#note-19 which is maybe related to this ticket.
- 07:06 PM feature request #9287 (Feedback): Show term details in details view of term tree editor
- Works as expected now and we can close the ticket.
There is only one final issue which is valid for all disabled f... - 11:49 AM feature request #9287 (Resolved): Show term details in details view of term tree editor
- Andreas Müller wrote:
> The buttons for multi-language editing are still enabled. So it is possble to remove a descr... - 10:08 PM Revision f9d65b70 (cdmlib): ref #9664 , ref #4311 fix cache handling for collectorTitle and nomenclaturalTitle
- 09:30 PM Revision c1e0cb15 (cdmlib): ref #9683. ref #9664 fix tests in AgentServiceImplTest
- 09:09 PM Revision 5861cfb5 (cdmlib): ref #9664 , ref #4311 adapt autoInitializer
- 09:07 PM Revision c26ab6e0 (cdmlib): cleanup
- 06:59 PM feature request #9647 (Closed): After deduplication the remaining record should get the focus in bulk editor
- I also could not reproduce this anymore. So I think we can close this ticket and watch the deduplication in production.
- 06:50 PM task #6714 (Closed): Create 001-cdm.h2.sql automatically
- 06:41 PM task #6714 (Resolved): Create 001-cdm.h2.sql automatically
- 06:26 PM Revision ae8047fb (cdmlib): ref #6714 fix ddl creation with template
- 04:57 PM Revision 828e0012 (taxeditor): ref #9373: adapt detail elements to enable/disable possibility of toggleable text fields
- 04:06 PM Revision 6c5e41a1 (cdmlib): cleanup
- 12:46 PM feature request #9687 (New): SpecimenTypeDesignationWorkingsetEditor: Option to create new type specimen by cloning existing
- UseCase: an invalid name has type information (entered into the SpecimenTypeDesignationWorkingsetEditor in Vaadin.
... - 11:57 AM bug #9686 (New): nomenclatural status missing in
- see
https://www.phycobank.org/cdm_dataportal/registration-search/filter?identifier=&taxon_name=Encyonema+chebaling... - 11:47 AM feature request #9685: add separator between rule applied and code edition
- fixed. please review after the relase.
- 11:46 AM feature request #9685 (Resolved): add separator between rule applied and code edition
- Applied in changeset commit:cdm-dataportal|8242168c0f18d1c516cc5e328c47f9daef8c66fa.
- 11:34 AM feature request #9685 (Closed): add separator between rule applied and code edition
- https://www.phycobank.org/cdm_dataportal/registration?identifier=http://phycobank.org/102790
Art. 40.7; Turland - 11:46 AM Revision 8242168c (cdm-dataportal): fix #9685 adding semicolon as separator between rule considered and code edition
- 11:19 AM Revision 3a553a43 (taxeditor): ref #9287: fix NPE when multilanguage is disabled
- 10:23 AM Revision c9e78864 (taxeditor): ref #9287: disable translation elements of term - continue
- 10:21 AM task #9659 (Closed): External Links Module reimplemented for flexible configuration
- 10:16 AM Revision abb2570a (cdm-dataportal): ref #9659 automatically enabling cdm_tokens via update function
- 10:13 AM Revision 8ee0429a (taxeditor): ref #9287: disable translation elements of term
06/28/2021
- 05:31 PM Revision 4bafd675 (cdmlib): ref #9664 , ref #4311 fix updateCaches in Person
- 04:49 PM bug #8364 (Closed): ext-links module: problems
- done
- 04:06 PM bug #8364: ext-links module: problems
- I am unsure if we really should add a link to a specific release of CoL as CoL meanwhile has switched to an monthly r...
- 02:31 PM bug #8364 (In Progress): ext-links module: problems
- 04:48 PM Revision 4dbe55db (cdm-dataportal): ref #9659 sensibly ordering ext_links defaults and defining weight correspondingly
- 04:28 PM Revision 6f3e6f62 (cdm-dataportal): ref #8364 adding col to external links defaults
- 04:20 PM feature request #9647: After deduplication the remaining record should get the focus in bulk editor
- Andreas Müller wrote:
> This generally works as expected but in 20-30% of the cases after setting the focus it got l... - 04:16 PM feature request #7309 (Resolved): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- 04:15 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- Andreas Müller wrote:
> >For Person the result of the collectorTitleCache field should only be displayed but not be ... - 04:15 PM Revision 9ef89740 (taxeditor): ref #7309: collector and nomenclatural title fields show cache if empty
- 04:09 PM Revision c9e207d1 (cdmlib): fix updateCaches - do not set nomenclaturalTitle but nomenclaturalTitleCache
- 03:57 PM Revision 54be0639 (cdm-dataportal): ref #8364 renaming category to 'Classification/Nomenclature' and adding wfo taxa
- 03:55 PM Revision cc1f61ef (cdmlib): ref #9664 fix test data
- 03:45 PM Revision 491f1f91 (cdmlib): ref #4311 fix collectorTitleCache handling in Team an in person2Team
- 03:43 PM Revision 1ba6c1ad (cdmlib): ref #9664 fix nomTitleCache test for fully empty person2Team
- 03:40 PM Revision 346eb1a6 (cdmlib): remove isGeneratingTitleCache which is not in use anymore
- 03:08 PM bug #9683: Auto-initialize root bean
- My comment was about the method in service. Maybe in dao it is slightly different as it is always used within a sessi...
- 03:06 PM bug #9683: Auto-initialize root bean
- Andreas Kohlbecker wrote:
> I think the new method, which by the way is only used for test classes, is irritating:
... - 02:10 PM bug #9683 (Feedback): Auto-initialize root bean
- I think the new method, which by the way is only used for test classes, is irritating:
~~~
public T loadProxy(int... - 09:39 AM bug #9683 (Resolved): Auto-initialize root bean
- Applied in changeset commit:cdmlib|5348613baa59038220d4efd1e4a851e3ccdb6c58.
- 09:35 AM bug #9683 (Closed): Auto-initialize root bean
- Currently only related objects are auto-initialized by the AbstractBean.beanAutoInitializers . The root bean itself i...
- 02:32 PM Revision 9477cfe7 (cdm-dataportal): ref #8364 adding europeana, morphbank and wfo do external links defaults
- 01:27 PM task #9659 (Resolved): External Links Module reimplemented for flexible configuration
- this should be fully solved now
- 12:16 PM Revision 322154af (cdmlib): cleanup
- 12:09 PM Revision 47125f72 (cdmlib): ref #9684 updating CdmBaseType constant names to latest model
- 12:06 PM Revision cb9f933b (cdmlib): ref #9684 adding more basetypes to CdmBaseType
- 11:29 AM bug #9684 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon() - [UPDATE] not permitted for 'anonymousUser'
e.e.c.r.controller.TaxonController - rootUnitDTOs()
/cdmserver/integration_reference/portal/taxon/d245083e-3bda...- 11:28 AM Revision bcbe5633 (cdmlib): ref #9683 add loadProxy method to services and adapt test to work with current auto initialize settings
- 11:25 AM Revision f4b956d8 (cdmlib): ref #9664 remove setting person setNomenclaturalTitle during cache update and avoid recomputing nomTitleCache and collectorTitleCache (not sure what this is needed for)
- 10:35 AM Revision b8e3fd47 (cdmlib): cleanup
- 09:43 AM task #9678 (Resolved): Remove Derived- and FieldUnitFacadeCacheStrategies
- The failing test in vaadin is related to incorrect autoinitialization (#9683) which is fixed now. So this ticket shou...
- 09:39 AM Revision 5348613b (cdmlib): fix #9683 autoinitialize root bean
- 09:38 AM Revision 3606bda3 (cdmlib): cleanup
06/26/2021
- 09:25 AM Revision 9d97647a (cdmlib): ref #9433 fix incorrect handling for MAN without sec/sensu reference
06/25/2021
- 07:58 PM bug #9665 (Closed): Filter out property change event for created and updated and cacheStrategy
- 07:44 PM feature request #9682 (New): Implement source for external authors
- via webservice to ipni or on something like CDM term server.
Good sources for (botanical) persons are:
Inde... - 07:41 PM feature request #9664 (Resolved): Add nomenclaturalTitleCache to TeamOrPersonBase
- 07:37 PM feature request #4311 (Resolved): Improve person representation in CDM
- Collector titel update script and explicit nomenclaturalTitleCache including protected have been implemented.
Open... - 07:35 PM task #9681 (New): Open issues for improving person representation
- copied from #4311
* usage of "suffix" (correct label??) in "Taxonname reference author" (discuss with NK)
* full ... - 07:08 PM bug #9651 (Closed): After creating a new MAN the details view is filled with other MAN
- Seem to work as expected (but not sure if I could reproduce it correctly)
- 07:01 PM feature request #9572 (Feedback): After creating a new term tree set the focus to the new tree
- Works as expected so we can close the ticket.
I only wonder if it can be further improved. Currently you have to d... - 06:55 PM feature request #9647 (Feedback): After deduplication the remaining record should get the focus in bulk editor
- This generally works as expected but in 20-30% of the cases after setting the focus it got lost immediately again tho...
- 06:47 PM bug #9654 (Closed): Deleting a synonym which has no name throws exception
- Works as expected
- 06:40 PM Revision f3fd528a (cdmlib): cleanup
- 06:35 PM feature request #9655 (Closed): When adding a new team member open search dialogue immediately
- Works as expected. ... and saves time
- 06:32 PM bug #9373: In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- How to reproduce:
* Create a specimen with a protected titleCache
* Open specimen tree editor and search for the ... - 06:23 PM feature request #7178 (New): implement collectorTitleCache in TeamOrPersonField (vaadin)
- The collector title is now implemented and available so the according field in vaadin editor can be implemented, too.
- 06:20 PM feature request #7178: implement collectorTitleCache in TeamOrPersonField (vaadin)
- Andreas Kohlbecker wrote:
> Aber bei diesem Ticket geht es um das vaadin UI nicht um die titleCache-Generierung in d... - 06:17 PM feature request #9680 (Closed): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- ... and extend search on the collectorTitleCache field.
Also the collectorTitleCache should be included in search ... - 06:12 PM feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- >For Person the result of the collectorTitleCache field should only be displayed but not be editable.
This still s... - 02:39 PM feature request #7309 (Resolved): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- This should be implemented now, please review.
- 06:05 PM feature request #9287 (Feedback): Show term details in details view of term tree editor
- The buttons for multi-language editing are still enabled. So it is possble to remove a description for a given langua...
- 05:51 PM task #9678 (In Progress): Remove Derived- and FieldUnitFacadeCacheStrategies
- Mostly implemented but there is still a test in vaadin that fails due to a lazy initialization exception when calling...
- 09:52 AM task #9678 (Closed): Remove Derived- and FieldUnitFacadeCacheStrategies
- Cache strategies for FieldUnits and DerivedUnits are currently using the DerivedUnitFacadeCacheStrategy or DerivedUni...
- 02:30 PM Revision e033750b (taxeditor): ref #7309: add collectorTitle/titleCache to editor - continue
- 02:25 PM Revision 4ff8bf0c (taxeditor): some changes in reference selection dialog to add a list of preselected references
- 02:21 PM Revision 8f1f6888 (taxeditor): ref #7309: add collectorTitle/titleCache to editor
- 12:52 PM Revision 603e7617 (cdm-vaadin): remove preliminary ignore from vaadin test
- 12:51 PM Revision 3750d994 (cdm-vaadin): preliminary ignore vaadin test
- 12:44 PM Revision 160332b0 (cdm-vaadin): fix failing test test03_deleteTypeDesignationTest
- 12:16 PM Revision 64a847c9 (cdm-vaadin): ref #4311 adapt vadin to collectorTitleCache
- 12:15 PM Revision fe720b6e (cdm-vaadin): ref #9664 adapt vaadin to nomenclaturalTitleCache
- 12:15 PM Revision d32ecdf2 (cdm-vaadin): update test DB for vaadin to 5.25
- 12:14 PM Revision f18466c9 (cdm-vaadin): cleanup
- 12:06 PM Revision 1f48ecbf (taxeditor): cleanup
- 12:06 PM Revision c03f37d8 (taxeditor): update test DB for taxeditor to 5.25
- 12:01 PM Revision f016f939 (cdmlib): update CdmCache and test DB for cdmlib to 5.25
- 10:32 AM bug #8517 (Closed): SpecimenOrObservation: data from protected titleCache missig in portal pages
- The above links work as expected so I think we can close this ticket. Please reopen if you think there is something l...
- 10:21 AM Revision bd4c6676 (cdmlib): ref #9678 implement cache strategies for field unit and derived unti within cdmlib model
- 10:21 AM Revision c189e0fb (cdmlib): cleanup and return empty Set (not null) for getOriginals
- 10:21 AM Revision 571c7dcc (cdmlib): add Identifier table to test data schema
- 10:21 AM Revision da9b5ae7 (cdmlib): cleanup
- 10:21 AM Revision c4b1960b (cdmlib): move SingleReadFormatter and SequenceFormatter to molecular package
- 10:21 AM Revision 21dd08ab (cdmlib): ref #4311 Increase size of collectorTitleCache to 800 in update script
- 10:21 AM Revision b69c47b9 (cdmlib): ref #9634 Increase size for AgentBase.titleCache to 800
- 10:21 AM Revision 30db901d (cdmlib): ref #9664 , ref #4311 Add nomenclaturalTitleCache to TeamOrPersonBase update script
- 10:21 AM Revision ce5bca3b (cdmlib): trim family name for titleCache
- 10:21 AM Revision 17b1eb1a (cdmlib): fix potential (but very unlikely) NPE in TaxonName.getAuthorshipCache
- 10:21 AM Revision 466620b1 (cdmlib): fix #9665 filter propertyChange events for created and updated
- 10:21 AM Revision 1cbb5d95 (cdmlib): cleanup
- 10:21 AM Revision 9f6a56c9 (cdmlib): ref #9664 first implementation for TeamOrPersonBase.nomenclaturalTitleCache (update script still missing)
- 10:21 AM Revision 66665714 (cdmlib): cleanup
- 10:21 AM Revision 71b9b632 (cdmlib): ref #4311 first implementation for TeamOrPersonBase.collectorTitle
- 10:21 AM Revision 6a912e4c (cdmlib): adapt version and CdmUpdater to v5.25
- 10:21 AM Revision 773b7fd0 (cdmlib): cleanup
- 10:11 AM task #9679 (New): Formatter and update script for SpecimenOrObservationBase short cache
- ... or "identityCache".
Also think about deviding titleCache in titleCache and fullTitle(Cache) where only the lat...
06/24/2021
- 10:28 AM Revision 2924a377 (cdmlib): accept only abcd schema in biocaseQuery
- 10:11 AM Revision 4e8d61cc (cdmlib): adapt test to fixed short citation
06/23/2021
06/22/2021
- 07:22 PM feature request #9677: Implement recombine operation
- NaK:
ja, genau, es sind Neukombinationen aufgrund neue taxonomische Erkenntnisse, oder einer phylogenetischen Stud... - 07:19 PM feature request #9677 (New): Implement recombine operation
- Currently we have only move and swap operations available for implementing a recombination of a taxon.
However, us... - 10:10 AM bug #9676: Separators in nomenclatural act representations between identifier and date
- Henning wrote:
Im Prinzip wäre es in der Ansicht, die Andreas M. gezeigt hat sinnvoll, mit Komma jeweils zu trennen. - 10:09 AM bug #9676 (New): Separators in nomenclatural act representations between identifier and date
- Würde es nicht Sinn machen, den Identifier und das Registrierungsdatum auch mit einem Separator zu versehen. Derzeit ...
06/21/2021
- 04:03 PM Revision 375e3109 (cdm-dataportal): ref #9637 adapting dataportal to renamed query params pageNumber -> pageIndex
- 03:54 PM Revision a245f810 (cdmlib): ref #9637 renaming pageNumber -> pageIndex in controllers
- 08:08 AM Revision b885ae98 (cdmlib): add new CharacterLabelBuilder
06/18/2021
- 12:41 PM Revision ecf4068f (taxeditor): ref #9337: characterLabelProvider needs to be adapted, too
- 12:30 PM feature request #8238: Allow interoperability between term trees
- The interoperability should be implemented in cdmlib.
addChild() should allow to add a term that is subtype of the... - 10:48 AM Revision 9e8ecb58 (taxeditor): ref #9337: allow adding characters on selected node
- 09:27 AM feature request #9572 (Resolved): After creating a new term tree set the focus to the new tree
- Now also the focus is set to the titleCache, please review.
- 09:27 AM Revision 46e677d2 (taxeditor): ref #9572: set focus to titleCache of term tree details
- 09:04 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
- Discussion how to handle Secundum Reference:
mail AM:
noch eine bisschen detaillierter Überlegung zu der Secund...
06/17/2021
- 03:14 PM Revision eaa38a1c (taxeditor): ref #9572: setfocus to newly created term tree
- 03:14 PM feature request #9572 (In Progress): After creating a new term tree set the focus to the new tree
- After creating a new tree the focus is set to this tree, the focus on titlecache is still missing.
- 03:04 PM Revision 070a27a4 (taxeditor): ref #9337: open in... vocabulary
06/16/2021
- 10:17 PM bug #9634 (Resolved): Update AgentBase and DescriptiveDataSet titleCache length where needed
- 05:33 PM task #9650 (In Progress): Update all titleCaches after upgrade of cache strategies and formatters
- 05:21 PM feature request #3444 (Feedback): Don't show empty General Tab
- Andreas Kohlbecker wrote:
> the synonymy can be placed on the general tab, so this ticket is no longer relevant
T... - 05:03 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- On the linked site above there is also an unnecessary whitespace before the closing bracket and a full stop after foo...
- 04:45 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- thanks for that hint.
- 03:45 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- >Aber das original spelling wird hier nicht mit ausgegeben: as „saglione“ – kann man das einstellen? In CDM-light kom...
- 11:07 AM feature request #9674 (Resolved): footnote keys for annotations to multilanguageText name descriptions inside brackets
- Applied in changeset commit:cdm-dataportal|c4dd76b64df4d09297b4335ac55be13e01833734.
- 10:50 AM feature request #9674 (Closed): footnote keys for annotations to multilanguageText name descriptions inside brackets
- Gymnocalycium saglionis (Cels) Britton & Rose, Cactaceae 3: 157. 1922 [Original spelling of epithet should be maintai...
- 03:34 PM bug #9675 (Closed): Person initials should never be empty
- 12:05 PM bug #9675 (Resolved): Person initials should never be empty
- Applied in changeset commit:cdmlib|5d058335ab6b9a59fe95c0becec9b4072bb6a0b4.
- 12:04 PM bug #9675 (Closed): Person initials should never be empty
- but null instead
- 02:28 PM Revision 306337ee (cdmlib): cleanup
- 02:28 PM Revision 5643e3ce (cdmlib): fix #9675 handling for empty initials (cont.)
- 02:03 PM Revision e9970345 (cdm-dataportal): ref #9674 footnote keys for annotations to multilanguageText name descriptions inside brackets - tests adapted
- 01:07 PM Revision 12addc56 (taxeditor): ref #9337, #9287: show details of term and supplemental data of term node
- 01:03 PM Revision 395b1b10 (cdm-dataportal): ref #9666 save access to unset name properties
- 12:05 PM Revision 5d058335 (cdmlib): fix #9675 handling for empty initials
- 11:12 AM feature request #3223 (New): data portal front end for free text search on occurrences
- Andreas Müller wrote:
> Is there a reason why you assigned the ticket to me? (dataportal front-end and freetext se... - 11:07 AM feature request #3223: data portal front end for free text search on occurrences
- Yes, I think it is a general requirement and not only for AT.
Therefore I move it to unassigned.
Is there a reaso... - 11:07 AM Revision c4dd76b6 (cdm-dataportal): fix #9674 footnote keys for annotations to multilanguageText name descriptions inside brackets
- 10:56 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- Andreas Müller wrote:
> Is this ticket really only about "allowOverride=NULL"? I ask because there is so much additi... - 10:53 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- Is this ticket really only about "allowOverride=NULL"? I ask because there is so much additional information in the d...
- 10:52 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- I added a ticket which should try to set the allowOverride to allowNull=false if possible (unfortunately not trival v...
- 10:48 AM bug #9672 (In Progress): NPE when CDMPreference contains allowOverride=NULL
- Allow override must never be NULL (even if the schema for historical reasons allwos null). Please adapt data in your ...
- 10:16 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
- Hier ist der Stacktrace:
~~~
Caused by: java.lang.IllegalArgumentException: Can not set boolean field eu.etaxonom... - 08:35 AM bug #9672 (Duplicate): NPE when CDMPreference contains allowOverride=NULL
- eu.etaxonomy.cdm.api.service.MediaServiceImpl.readResourceMetadataFiltered(MediaRepresentation representation) throws...
- 10:51 AM feature request #9287 (Resolved): Show term details in details view of term tree editor
- this should be fixed. Please review.
- 10:50 AM Revision 74ca5142 (taxeditor): ref #9287: show disabled term details in term tree
- 10:50 AM task #9673 (New): Remove allowNull from allowOverride
- in CdmPreferences, if possible.
Use false (0) instead as default. - 10:49 AM Revision ee4b4e44 (taxeditor): ref #9287: show disabled term details in term tree
- 10:40 AM feature request #9270 (Duplicate): show original spelling on taxon page
- 10:33 AM Revision 46aa1f81 (cdm-dataportal): ref #9659 improved ext_link block layout with migration of old installations
06/15/2021
- 05:06 PM bug #9669 (Closed): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- 03:02 PM bug #9669 (Resolved): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- Applied in changeset commit:cdm-dataportal|ecf46c678ce8626ebe6a945c065c76b7e8819e09.
- 03:01 PM bug #9669 (In Progress): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- 02:51 PM bug #9669 (Closed): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of ... bytes exhausted
- ~~~
[Tue Jun 15 14:41:08.025031 2021] [php7:notice] [pid 19252] [client 127.0.0.1:53352] PHP Fatal error: Allowed m... - 04:26 PM feature request #6213: use separate tempfolder per store updater
- should be improved by using subfolders per `Store.storeName`:
pass `Store.storeName` as optional argument to `Http... - 04:13 PM bug #9671 (New): handshake_failure on polling for updates at http://eunis.eea.europa.eu/rdf/species.rdf.gz
- ~~~
javax.net.ssl.SSLHandshakeException: Received fatal alert: handshake_failure
at sun.security.ssl.Alerts... - 03:33 PM Revision 54a4201c (cdm-dataportal): fix #9669 further improvement of cdm_ws_fetch_all()
- 03:02 PM Revision ecf46c67 (cdm-dataportal): fix #9669 avoiding infinite loop in cdm_ws_fetch_all()
- 02:28 PM Revision 4adc4eeb (cdm-dataportal): selenium test for AdvancedSearchForms
- 02:21 PM Revision 2ae1340d (cdm-dataportal): fixing remamend array key
- 02:13 PM feature request #3223: data portal front end for free text search on occurrences
- This was also required in the campanula project,
As we don't have a specimen search yet, this ticket should conside... - 02:12 PM Revision c9e4e6f8 (taxeditor): ref #9668: hotfix for secundum handling when swap syn and accepted - continue
- 01:42 PM feature request #3444 (Rejected): Don't show empty General Tab
- the synonymy can be placed on the general tab, so this ticket is no longer relevant
- 01:41 PM task #3241: favicon for algaterra
- Henning, please can you decide?
- 01:14 PM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
- In general I wonder if it is a good idea to stay with the new implementation of the method. The current problem shows...
- 01:09 PM bug #9668 (Feedback): Secundum reference is switched when swap synonym and accepted taxon
- I get
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/taxon.service
last r... - 11:01 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
- The hotfix is implemented, please review with nightly.
- 10:14 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
- As a workaround the secundum reference is switched in editor for a quick hotfix.
The complete implementation needs... - 09:36 AM bug #9668 (In Progress): Secundum reference is switched when swap synonym and accepted taxon
- mail NadjaK:
ich bin gerade auf eine Fehlerquelle gestoßen:
Ich habe Salmonopuntia schickendantzii als neues ... - 12:00 PM Revision 9bf8e8eb (taxeditor): ref #9337: paste does not need save
- 10:08 AM Revision 5b77dba4 (taxeditor): ref #9668: hotfix for secundum handling when swap syn and accepted
- 10:00 AM Revision 67b94f1a (taxeditor): Updated version in pom / project files to taxeditor version : 5.24.1 and cdmlib version : 5.24.0
- 09:40 AM Revision 63004250 (taxeditor): ref #9668: hotfix for secundum handling when swap syn and accepted
- 08:30 AM Revision aad1e999 (cdm-dataportal): adapting portal to modified media specimen cache
06/14/2021
- 05:47 PM Revision a1edfba5 (cdm-dataportal): ref #9659 more compact layout for ext_links by html5 labels
- 05:40 PM Revision 0501ab2c (cdm-dataportal): ref #9659 updating existing ext_link block configurations
- 05:25 PM Revision 09c59988 (cdm-dataportal): ref #9666 bug fix in cdm_tokens
- 05:11 PM Revision 89aa0117 (cdm-dataportal): ref #9659 field 'glue' removed from admin pages
- 04:46 PM Revision 0a311d85 (cdm-dataportal): ref #9659 all ext_links templates with cdm_tokens, glue removed
- 04:41 PM Revision 6325712d (cdm-dataportal): ref #9659 updating install script for ext_links using cdm_tokens
- 04:39 PM Revision 580cd817 (cdm-dataportal): ref #9666 more cdm:taxon_name tokens
- 04:11 PM Revision 5e971c04 (cdmlib): ref #9666 adding is{rankLevel} to term serialization for cdm_tokens
06/12/2021
- 11:53 AM bug #9649 (Resolved): Specimens sometimes have empty titleCache instead of class<UUID>
- Set to resolved in case #9665 fixed the issue.
- 11:48 AM task #9030 (Closed): Import flowering periods for Cyprus
- Import did run. Some manual adaptations needed to be done by RH:
~~~
Taxon uuid has incorrect format. Taxon could... - 11:46 AM task #9030 (Resolved): Import flowering periods for Cyprus
- Applied in changeset commit:cdmlib|43f0d97d9fbc3760be1fbd0d320f3cea94d67706.
- 11:45 AM Revision ae8f9c66 (cdmlib): minor
- 11:45 AM Revision 43f0d97d (cdmlib): fix #9030 add reverse order pattern for monthPattern with extreme values
- 11:42 AM feature request #9667 (New): Printversion for Keys
- RH:
Schlüsselsicherung: Gibt es eigentlich eine irgendwie geartete Möglichkeit alle Zypern-Gattungs-Schlüssel in e... - 12:17 AM feature request #9664 (In Progress): Add nomenclaturalTitleCache to TeamOrPersonBase
- 12:16 AM Revision 15365ed8 (cdmlib-apps): ref #9664 change nomTitle to nomTitleCache in cdmlib-app
- 12:13 AM Revision 74a337cc (cdmlib-apps): ref #9030 add Cyprus Flowering period activator
06/11/2021
- 06:16 PM Revision d2d48638 (cdm-dataportal): ref #9659 using cdm_tokens in ext_links - fist step
- 06:15 PM Revision 93f61a88 (cdm-dataportal): cleaning up
- 05:40 PM Revision ca1ab005 (cdm-dataportal): ref #9666 cdm_tokens module implemented
- 05:00 PM Revision 1702d40c (cdm-dataportal): ref #9666 get_current_name_uuid() in cdm_dataportal
- 04:59 PM task #9666 (Closed): cdm_tokens module
- This module will provide Drupal tokens:
~~~
cdm:taxon_name
cdm:taxon_name:uninomial
cdm:taxon_name:epithet
~~~... - 02:29 PM feature request #3223 (Feedback): data portal front end for free text search on occurrences
- Is this ticket still needed for general use?
- 02:26 PM task #3996 (Feedback): [Overview] Algaterra search functionality
- 02:15 PM task #3996: [Overview] Algaterra search functionality
- It has been decided not to migrate AlgaTerra.
Should we keep this ticket somehow or close it? - 02:25 PM task #3241 (Feedback): favicon for algaterra
- 02:25 PM task #3241: favicon for algaterra
- Is this ticket stil needed?
- 02:24 PM feature request #3444 (Feedback): Don't show empty General Tab
- Should we keep this ticket and move it elsewhere or close it?
- 02:14 PM task #9251: Specimenview path: better representation of RecordBasis
- AT migration was not the correct target version.
- 02:02 PM feature request #3347 (Feedback): services and REST service controller for molecular classes implemented
- Is this still an open issue? If yes, we should move it to another milestone.
- 01:49 PM Revision 5c5f760a (cdm-dataportal): ref #9659 ext_links update function to create scheme and migrate settings
- 01:35 PM bug #9649 (In Progress): Specimens sometimes have empty titleCache instead of class<UUID>
- Maybe fixed by #9665 . Need to check after release if this still happens.
- 01:24 PM bug #9665 (Resolved): Filter out property change event for created and updated and cacheStrategy
- fixed, will be merged into develop with uml 5.25
- 01:20 PM bug #9665 (Closed): Filter out property change event for created and updated and cacheStrategy
- Currently these events (created and updated) are fired by the CdmPreDataChange Listener which results in setting titl...
- 01:17 PM Revision f545e3c5 (cdm-dataportal): ref #9659 ext_links enable/disable bug fix
- 01:13 PM bug #7817 (Duplicate): Team caches should not show '& al.'
- duplicates #9326, #9464 and #9624
- 12:02 PM Revision 5fcd18f5 (cdm-dataportal): ref #9659 ext_links order configurable
- 11:50 AM Revision 019d69fa (cdm-dataportal): ref #9659 ext_links appaearance option
- 11:13 AM Revision c7198d48 (taxeditor): ref #9629: iterate over causes of exception
- 09:57 AM feature request #9655 (Resolved): When adding a new team member open search dialogue immediately
- this is fixed now, please review.
- 09:55 AM Revision b108d934 (taxeditor): ref #9655: code cleaning
- 09:50 AM Revision a3ebe576 (taxeditor): ref #9655: adapt TeamMemberSection to call selection dialog when click on +
06/10/2021
- 10:12 PM Revision 20125bcd (cdm-dataportal): avoiding accessing unset properties
- 09:38 PM Revision fc1b00e2 (cdm-dataportal): ref #9659 ext_links migration of old setting complete - bugfix for status
- 08:29 PM Revision a14257fa (cdm-dataportal): ref #9659 ext_links migration of old setting complete
- 03:42 PM feature request #9664 (Resolved): Add nomenclaturalTitleCache to TeamOrPersonBase
- Similar to collectorTitle(Cache) we need a cache for nomenclaturalTitle in Person, too.
This is to make it possible ... - 03:31 PM Revision 819c7b2e (cdmlib): adapt image length in MediaInfoFactoryTest
- 02:36 PM Revision c03b5f5d (cdm-dataportal): ref #9659 preparing old settings migration
- 01:57 PM Revision b03fb28d (cdm-dataportal): ref #9659 ext_links enable/disable operation
- 01:25 PM Revision f16aa6b9 (cdmlib): fix #9663: remove additional text and file ending - adapt tests
- 01:18 PM Revision 0f9caab7 (cdmlib): fix #9663: remove additional text and file ending - continue
- 10:53 AM bug #9663: Remove additional text from media title
- please review.
- 10:52 AM bug #9663 (Resolved): Remove additional text from media title
- Applied in changeset commit:cdmlib|e3e87f678eff890bf1f0f478d4973a0b0e6f70de.
- 10:30 AM bug #9663 (Closed): Remove additional text from media title
- mail NK:
Könnte nicht von vornherein dafür gesorgt werde, dass bei der Generierung des Bilddatenamens im "Titel"-C... - 10:52 AM Revision e3e87f67 (cdmlib): fix #9663: remove additional text and file ending
- 10:27 AM Revision 0e38f1bf (cdm-dataportal): ref #9659 ext_links editing possible
- 09:45 AM Revision 62e489ea (cdmlib): add version and SchemaUpdater_5230_5250 for new model version 5.25
- 09:45 AM Revision 0a59dd14 (cdmlib): cleanup
- 09:44 AM bug #9662 (New): CDMLight: Output should summarize all MAN with same name and err. sec
- mail WB:
Aber hierzu noch der Wunsch, dass die MAN-sensu Referenzen zusammengefasst werden, wenn der Name und die ... - 09:36 AM bug #9661 (New): Add possibility to clone a MAN
- As long as it is not possible to add more than one sensu reference to a MAN, the users need to add more than one MAN ...
- 08:42 AM feature request #9270: show original spelling on taxon page
- Andreas Müller wrote:
> should we close this as duplicate (for #7781)?
?? - 08:29 AM Revision d259fad0 (cdm-dataportal): ref #9659 adding enable/disable operation again
06/09/2021
- 07:08 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- Andreas Müller wrote:
> Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesi... - 03:44 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesiana-prospective/cdm_datap...
- 03:42 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- I checked in old databases from 12_2020 (before nomenclatural sources movement) and 04_2021 (before deleting old Taxo...
- 01:41 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- Strange is, this problem exists only in flora_malesiana_prospective. In no other production database such duplicate r...
- 01:25 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- But there are multiple nomSources that link to the same name:
~~~
SELECT *
FROM OriginalSourceBase osb
WHERE o... - 01:15 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- I tested by calling
~~~
appCtr.getOccurrenceService().findRootUnitDTOs(UUID.fromString("2debf5ee-cb57-40bc-af89-1... - 06:05 PM Revision 2a3a2a4f (cdm-dataportal): ref #9659 database table scheme for ext_links
- 06:03 PM Revision 0a381a96 (cdm-dataportal): ref #9659 ext_links overview: removing ensable/disable action
- 05:51 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- I will implement the update script now so we also need the fields in taxeditor
- 05:36 PM Revision deba3cdd (cdm-dataportal): ref #9659 fixing ext_links edit link
- 04:40 PM Revision 82e80b81 (cdm-dataportal): ref #9659 admin overview improved and edit form ready
- 01:32 PM feature request #9655: When adding a new team member open search dialogue immediately
- The classes which are involved in creating the new element are:
AbstractUnboundEntityCollectionSection.java and Te... - 10:31 AM feature request #9655: When adding a new team member open search dialogue immediately
- Andreas Müller wrote:
> Katja Luther wrote:
> > This is not as easy as it seems because the framework of these coll... - 10:12 AM feature request #9655: When adding a new team member open search dialogue immediately
- Katja Luther wrote:
> This is not as easy as it seems because the framework of these collection details views bases ... - 10:07 AM feature request #9655 (In Progress): When adding a new team member open search dialogue immediately
- This is not as easy as it seems because the framework of these collection details views bases on creating a dummy ele...
- 12:33 PM bug #9660 (New): Define which namerelationships are shown and with which label in DB preference
- Preferences for Namerelationshipship output should contain informations about:
* which relationships should be sho... - 11:17 AM feature request #9647: After deduplication the remaining record should get the focus in bulk editor
- This should be fixed, please review.
- 11:13 AM feature request #9647 (Resolved): After deduplication the remaining record should get the focus in bulk editor
- Applied in changeset commit:taxeditor|5924653e4dd6d9ae695675b7ee5a6f98856a9199.
- 11:14 AM Revision 5924653e (taxeditor): fix #9647: set focus to deduplication target
- 08:56 AM Revision ecd1141f (cdm-dataportal): ref #9659 admin overview on ext_links working
- 08:55 AM task #9659 (Closed): External Links Module reimplemented for flexible configuration
- The links in the *External Links Module* are hard-coded. Adding or changing links always involves developers to take ...
- 08:52 AM Revision e0a61933 (cdmlib): ref #9646: add name relationships to homotypicgroupString and add type des reference
06/08/2021
- 08:45 PM task #9650: Update all titleCaches after upgrade of cache strategies and formatters
- Updated all databases except for col, euromed, euromed_caucasus and vibrant_index names/taxa/specimen
- 05:46 PM task #9364 (Closed): Cleanup authors with multiple & and protected names and teams
- protected (title)caches moved to new ticket #9658.
All "multiple &" solved.
Potentially dangerous protected cac... - 05:43 PM task #9658: Cleanup authors with protected names and authors
- Protected Teams(nomenclaturalTitle):
AlgaTerra: >14000
Cichorieae: 8487
Cuba: 14
Campanula: 1171
Caryo_amaranth: 113... - 05:43 PM task #9658: Cleanup authors with protected names and authors
- Protected Names (still without fulltitlecache and authorshipcache):
Bromeliaceae: 584
Cichorieae: 476
Cuba: 567
Camp... - 05:42 PM task #9658 (New): Cleanup authors with protected names and authors
- copied from #9364
In some databases there are many names with protected caches which may lead to problems when sea... - 03:52 PM bug #9657 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
http://api.cybertaxonomy.org/flora-malesiana-prospective/portal/taxon/2debf5ee-cb57-40bc-af89-173d1d17cefe/rootUnit...- 03:39 PM Revision be02c88f (cdmlib): fixing some more bugs
- 03:21 PM Revision 7599ba75 (cdmlib): fixing NPE in DerivationEventDTO
- 11:44 AM bug #9651: After creating a new MAN the details view is filled with other MAN
- This problem was caused by setting the focus everytime the name editor is refreshed and all containers are redrawed. ...
- 11:39 AM bug #9651 (Resolved): After creating a new MAN the details view is filled with other MAN
- Applied in changeset commit:taxeditor|1b62813be8ba0f6f5cde2384147c62f0c913f1b6.
- 11:40 AM bug #9654: Deleting a synonym which has no name throws exception
- this should be fixed with the last commit, please review.
- 09:17 AM bug #9654 (Resolved): Deleting a synonym which has no name throws exception
- Applied in changeset commit:cdmlib|0bc2d77330a70a6115316b914b952657f990c624.
- 11:40 AM Revision 1b62813b (taxeditor): fix #9651: setFocus only for selected conceptContainer
- 11:31 AM bug #9656 (New): Closing the referencing objects view should cancel the current request
- Sometimes request take long because a record has many referencing objects. The easiest way to stop this seems to be c...
- 09:14 AM Revision 0bc2d773 (cdmlib): fix #9654: avoid NPE for synonym without name
- 08:52 AM feature request #9655 (Closed): When adding a new team member open search dialogue immediately
- Currently one has to first push the +-button and then the search button but the search button is the only button to p...
06/07/2021
- 10:06 PM bug #9654 (Closed): Deleting a synonym which has no name throws exception
- When deleting a synonym (maybe also a taxon) an undefined exception is thrwon "Error thrown but no associated excepti...
- 05:22 PM bug #9358: OptionalDataException during HTTP invoker call
- Auch bei Cuba trat das Problem jetzt wieder bei der Eingabe von **Verbreitungsdaten** auf:
~~~
WGB:
erster Ein... - 04:51 PM Revision c428113e (cdm-dataportal): Merge tag '5.24.1' into develop
- tagging hfx release 5.24.1
- 04:51 PM bug #9629: Better handling of OptionalDataException
- You could e.g. recursively iterate through exception e and its causes e.getCause() and check all these exceptions for...
- 04:45 PM bug #9629: Better handling of OptionalDataException
- For testing you could manually throw an OptionalDataException and try to catch it correctly.
- 04:43 PM bug #9629 (Feedback): Better handling of OptionalDataException
- Reopen this ticket. Using toString is incorrect method to check if an exception is in the stacktrace.
exception.to... - 04:51 PM Revision c02c7498 (cdm-dataportal): Merge branch 'hotfix/5.24.1'
- 04:50 PM Revision f4d1f849 (cdm-dataportal): Merge branch 'develop' into hotfix/5.24.1
- 04:35 PM Revision 53911330 (cdm-dataportal): finding package local composer - 2
- 04:31 PM Revision 298df01d (cdm-dataportal): backup filename with minute granularity
- 04:26 PM Revision a59edf6c (cdm-dataportal): finding package local composer
- 03:13 PM Revision 73e0c626 (cdm-dataportal): fix-permission.sh bugfix
- 03:11 PM Revision 1e12be41 (cdm-dataportal): fix-permission.sh and updating README
- 02:52 PM Revision b84e63d6 (cdm-dataportal): feedback of fix-permission.sh
- 02:48 PM Revision 04aea066 (cdm-dataportal): fixing permissions of fix-permission.sh
- 02:45 PM Revision c2a36c08 (cdm-dataportal): admin script to fix permissions
- 12:53 PM Revision 8716981b (cdm-dataportal): update script with more doc and preserving symlinks
- 11:29 AM task #9653 (New): update system table with new installation profile name and location
- The installation profile `CDM_Portal` has been renamed to `cdm_portal`. Now Drupal complains with a User warning: "Th...
- 11:20 AM feature request #9652 (New): instances status report web service
- For many devOp use cases it is important to know
* if all instances have been successfully started
This web ser... - 10:10 AM Revision 90def588 (taxeditor): avoid NPE
- 10:07 AM bug #9651 (Closed): After creating a new MAN the details view is filled with other MAN
- mail WB:
Hallo,
es geht um die EIngabe eines MAN mit dem gleichen Namen wie ein bereits bestehender MAN (derzeit... - 09:09 AM Revision 04434a55 (cdm-dataportal): test independent from clean_url setting
- 08:50 AM Revision 73d7cb40 (cdm-dataportal): test independend from module location
06/04/2021
- 10:12 PM Revision 53bfedc2 (cdm-dataportal): adapting test suite to new installation package structure
- 11:37 AM bug #9646 (In Progress): CDM Light: Add name relationship to concatenated string for homotypic group
- implemented a first version analogue to portal implementation. Needs more discussion how to handle names also in syno...
- 11:26 AM Revision 1cdff041 (cdmlib): ref #9645, #9646: add namerelations to homotypicGrouString and reference to type/specimenstatement
06/03/2021
- 02:46 PM task #9650 (In Progress): Update all titleCaches after upgrade of cache strategies and formatters
- Before the databases need to be checked for data dirty data which could be overwritten by cache update (e.g. referenc...
- 01:48 PM bug #9649 (Closed): Specimens sometimes have empty titleCache instead of class<UUID>
- E.g. in additiviy_ontology after running titleCache update for records 72 and 74
- 01:37 PM task #9648 (New): Remove duplicated extensions
- In cichorieae (maybe also E+M) some reference records had a large number of similar extensions.
Most of them (in cic... - 01:00 PM feature request #9647 (Closed): After deduplication the remaining record should get the focus in bulk editor
- this is helpful when working on longer lists because after save the list jumps to the beginning otherwise
- 10:39 AM feature request #8476 (Closed): Implement support for TermCollection.isFlat in TaxEditor
- This seems to be fully fixed now. I move it back to 5.24 as it was fixed there.
Only open issue (menu) was moved to ... - 08:23 AM bug #9646 (Closed): CDM Light: Add name relationship to concatenated string for homotypic group
- mail WB:
Name relationships werden in der Konkatenierung der homotypischen Gruppen in CDM-Light nicht berücksichti... - 08:21 AM bug #9645 (Closed): CDM Light: Add Type Statement Reference to homotypicalGroup.csv
- mail WB:
Hallo,
diese Referenz haben wir offenbar in homotypicGroup.csv vergessen. Die ist für Cuba ziemlich wich...
06/02/2021
- 03:10 PM Revision 85326264 (taxeditor): ref #9448: remove E4 from file names - bulkeditor continue
- 03:06 PM Revision 865e32f6 (taxeditor): ref #9448: remove E4 from file names - adapt fragment.e4xmi
- 01:23 PM Revision 8a6625ad (taxeditor): ref #9448: remove E4 from file names - continue
- 01:20 PM Revision a6d3d9c5 (taxeditor): ref #9448: remove E4 from file names - supplementalDataView
- 01:16 PM Revision bbae6889 (taxeditor): ref #9448: remove E4 from file names - coninue and cleanup
- 12:47 PM Revision 45e18d0e (taxeditor): code cleaning
- 12:34 PM Revision 38e9eb06 (taxeditor): ref #9448: remove E4 from file names - cdmViewer
- 12:30 PM Revision 3eb83ba9 (cdm-dataportal): making ci scripts executable
- 12:30 PM Revision 1645f1e2 (taxeditor): ref #9448: remove E4 from file names - bulkeditor continue
- 12:27 PM Revision 843eefc4 (taxeditor): ref #9448: remove E4 from file names - bulkeditor package
- 12:24 PM Revision c47199f3 (cdm-dataportal): Merge branch 'release/5.24.0' into develop
- 12:24 PM Revision 85f6952f (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
- 12:24 PM Revision 4bb90f2f (cdm-dataportal): updating poms for branch'release/5.24.0' with non-snapshot versions
- 12:24 PM Revision 803fc583 (cdm-dataportal): release-preparation: production level css
- 12:13 PM Revision c58e5687 (cdm-dataportal): updating poms for 5.25.0-SNAPSHOT development
- 12:08 PM Revision fa228679 (taxeditor): ref #9448: remove E4 from file names - continue
- 12:04 PM Revision 2611dff9 (taxeditor): ref #9448: remove E4 from file names
- 11:50 AM Revision 0d88bbd4 (taxeditor): Merge branch 'release/5.24.0' into develop
- 11:50 AM Revision 031baf62 (taxeditor): Merge branch 'release/5.24.0'
- 11:48 AM Revision da969bb3 (cdm-dataportal): release-preparation: production level css
- 11:45 AM Revision 717af2aa (cdm-server): Merge branch 'release/5.24.0' into develop
- 11:45 AM Revision f780fcfc (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 11:44 AM Revision a2edd9ec (cdm-server): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:42 AM Revision ef93e952 (cdm-webapp): Merge branch 'release/5.24.0' into develop
- 11:42 AM Revision 13e17276 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 11:42 AM Revision 06c02838 (cdm-webapp): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:42 AM Revision c1e7bfd3 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.24.0
- 11:42 AM Revision 36a499c6 (cdm-vaadin): Merge branch 'release/5.24.0' into develop
- 11:42 AM Revision 81415a2d (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 11:38 AM Revision ba1014bf (cdm-vaadin): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:37 AM Revision 13817a25 (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0
- 11:32 AM bug #9630 (Closed): Make the handling of computed description configurable
- Code is cleaned up. I check the structured descriptions and create a new ticket if necessary.
- 11:25 AM Revision 59fa4a9b (cdmlib): Updating develop poms back to pre merge state
- 11:25 AM Revision 3a298583 (cdmlib): Merge branch 'master' into develop
- 11:25 AM Revision 627867d1 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 11:25 AM Revision def9db7a (cdmlib): Merge branch 'release/5.24.0'
- 11:09 AM Revision 512616ce (cdmlib): updating poms for branch'release/5.24.0' with non-snapshot versions
- 11:06 AM Revision 6ab495c1 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.24.0-SNAPSHOT
- 11:06 AM Revision 1f268784 (cdm-webapp): updating poms for 5.25.0-SNAPSHOT development
- 11:06 AM Revision ff128f85 (cdm-webapp): updating poms for 5.24.0 branch with snapshot versions
- 11:05 AM Revision 463f5c7b (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.25.0-SNAPSHOT
- 11:03 AM Revision 2e85a104 (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
- 11:03 AM Revision 92e8e83e (cdm-vaadin): updating poms for 5.25.0-SNAPSHOT development
- 11:03 AM Revision 0ebe4a8b (cdm-vaadin): updating poms for 5.24.0 branch with snapshot versions
- 11:03 AM Revision abde3bb8 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
- 10:59 AM Revision b43ac178 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
- 10:59 AM Revision 43e40bda (cdm-vaadin): jenkins bumping cdmlib.version to 5.26.0-SNAPSHOT
- 10:56 AM Revision d9d02bca (cdm-vaadin): updating poms for 5.25.0-SNAPSHOT development
- 10:56 AM Revision 8baba0a0 (cdm-vaadin): updating poms for 5.24.0 branch with snapshot versions
- 10:56 AM Revision e974b018 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
- 10:56 AM Revision 7fbd6a6c (cdm-server): updating poms for 5.25.0-SNAPSHOT development
- 10:56 AM Revision 37d8780f (cdm-dataportal): updating poms for 5.25.0-SNAPSHOT development
- 10:55 AM Revision 06b435a4 (taxeditor): Updated version in pom / project files to taxeditor version : 5.25.0-SNAPSHOT and cdmlib version : 5.25.0-SNAPSHOT
- 10:55 AM Revision 2ee57d46 (taxeditor): Updated version in pom / project files to taxeditor version : 5.24.0 and cdmlib version : 5.24.0
- 10:51 AM Revision ef97cad1 (cdmlib): updating poms for 5.25.0-SNAPSHOT development
- 10:41 AM bug #9642 (Closed): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Done
- 10:20 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> >
> > >I guess there is still a test to be adapted?
> >... - 10:16 AM bug #9642 (Feedback): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Andreas Müller wrote:
>
> >I guess there is still a test to be adapted?
>
> whyt exactly do you mean?
Isn... - 09:15 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- But I removed the order by from the media specimen sql. As this query always returns max 1 result order by is not nec...
- 09:13 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Andreas Kohlbecker wrote:
> In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaI... - 08:46 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaIds()` is sorted twice: fist b...
- 10:40 AM Revision 678da343 (cdm-dataportal): ref #9642 adapting test method to more media appearing in the derivate path view
- 10:17 AM Revision 57a53d78 (taxeditor): fix #8476: fix paste not allowed for nodes if tree is flat
- 10:17 AM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
- Applied in changeset commit:taxeditor|57a53d78c9cac39492c450ea46b24dc207de55fc.
- 09:04 AM feature request #8476 (Resolved): Implement support for TermCollection.isFlat in TaxEditor
- Andreas Müller wrote:
> Please also test for d&d from vocabulary editor. I have not tested yet.
With the last com... - 10:09 AM Revision 02c718f2 (taxeditor): ref #8776: correct enable/disable allowDuplicates
- 10:08 AM Revision 37f2b410 (cdmlib): ref #8776: fix contains duplicates in dto
- 09:15 AM Revision 7c47b73f (cdmlib): ref #9642 remove unnecessary order by
- 09:01 AM Revision 12e7c169 (taxeditor): ref #8476: fix d&d in flat tree and cleanup
- 08:24 AM bug #9641 (Closed): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
06/01/2021
- 10:40 PM bug #9630 (Resolved): Make the handling of computed description configurable
- Works now as expected for distributions but needs to be tested for structured descriptions (open new ticket if necess...
- 03:04 PM bug #9630: Make the handling of computed description configurable
- Katja Luther wrote:
> Andreas Müller wrote:
> > The detail fields in timescope are still editable with "disabled"
... - 02:48 PM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> The detail fields in timescope are still editable with "disabled"
In my local installatio... - 02:42 PM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> Andreas Müller wrote:
> > And supplemental data of *not*-computed dara are not editable wit... - 02:31 PM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> And supplemental data of *not*-computed dara are not editable with "disabled"
... but onl... - 02:30 PM bug #9630: Make the handling of computed description configurable
- And supplemental data of *not*-computed dara are not editable with "disabled"
- 02:28 PM bug #9630: Make the handling of computed description configurable
- The detail fields in timescope are still editable with "disabled"
- 10:36 AM bug #9630: Make the handling of computed description configurable
- Andreas Müller wrote:
> When "disabled" is selected, timescope is still editable (I have only checked distributions... - 10:05 AM bug #9630: Make the handling of computed description configurable
- "Invisible" works as expected
- 10:04 AM bug #9630: Make the handling of computed description configurable
- When "disabled" is selected, timescope is still editable (I have only checked distributions no other descriptions)
- 09:54 AM bug #9630 (Feedback): Make the handling of computed description configurable
- When selection is "Enabled" the supplemental data and the sources are still disabled. Tested with rem_conf_am/->Speci...
- 10:33 PM bug #9644 (Closed): fix NPE in term selection
- works as expected.
- 10:32 PM bug #9644 (Resolved): fix NPE in term selection
- Applied in changeset commit:taxeditor|5bdd89de5a89aca16929c174a3f22e7f0680a4b1.
- 10:30 PM bug #9644 (Closed): fix NPE in term selection
- An NPE is thrown if a term is deselected in the term selection dialog for term tree items.
- 10:32 PM Revision 4334327a (taxeditor): cleanup
- 10:32 PM Revision 5bdd89de (taxeditor): fix #9644 fix NPE in term selection
- 10:15 PM feature request #8474 (Closed): Make TermCollection.orderRelevant usable for TermTrees
- This seems to be completely fixed. Maybe you can find out when the last relevant commit was and attache the ticket to...
- 10:11 PM bug #8776 (Closed): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Seems to work as expected now.
- 11:07 AM bug #8776 (Feedback): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- Everything works, only there is one open issue which was not yet on the list: d&d from a vocabulary is still possible...
- 10:13 AM bug #8776 (Resolved): Open issues for TermCollection.allowDuplicates handling in TaxEditor
- please review
- 09:53 PM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
- Please also test for d&d from vocabulary editor. I have not tested yet.
- 09:52 PM feature request #8476 (Feedback): Implement support for TermCollection.isFlat in TaxEditor
- d&d is still available for moving a term to become a child of another term node. Instead the "is flat" flag is disabl...
- 09:39 PM feature request #9643 (New): New menu in term tree editor should have alternatives for flags
- copied from #8476, #8474 (and #8776, not really mentioned there)
But as there are 3 flags there is a larger number... - 07:32 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- opening, saving, editing is working without problems for new and old records. Ticket can be closed.
- 02:31 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- no errors yet, seems to be correct, but I need to check more examples.
- 12:57 PM bug #9641: NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- please review on the test system
- 12:47 PM bug #9641 (Resolved): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- Applied in changeset commit:cdm-vaadin|830b420d4d141be5056606b0524e0706c62f3f87.
- 12:45 PM bug #9641 (Closed): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
- Test System
Genus = Sabbea (published, orig. des.) --> open NameTypeDesignation Editor
~~~
Caused by: org.hi... - 06:58 PM feature request #6718: Constistent TypeDesignation representation creation
- not related to a target version
- 06:54 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
- "Data" tickets are usually not related to a target version once they are fixed. Therefore I remove it.
- 05:05 PM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- please review
- 05:05 PM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- The method countMedia and getMedia in OccurrenceImpl was not correctly updated after media was removed from SpecimenO...
- 05:01 PM bug #9642 (Resolved): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- Applied in changeset commit:cdmlib|d6a8517c4b8892a03e449dfe3c751036ee570bd6.
- 02:00 PM bug #9642 (Closed): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
- ~~~
12:55:00.629 [flora-malesiana] [qtp1511785794-17712] INFO e.e.c.r.c.DerivedUnitFacadeController - doGetFieldObj... - 05:01 PM Revision d6a8517c (cdmlib): fix #9642 fix countMedia and getMedia in OccurrenceDaoHibernateImpl
- 04:37 PM Revision 2daf0f0b (taxeditor): ref #9630: setEnabled to source section
- 04:00 PM Revision 093e7cd5 (taxeditor): ref #8776, #9630: d&d from voc to tree and disable time period if fact is disabled
- 03:53 PM Revision 9020f8ff (cdmlib): ref #8776: add all terms of the hierarchy to the list of the treeDto
- 03:20 PM Revision 9398c95d (taxeditor): cleanup
- 12:47 PM Revision 830b420d (cdm-vaadin): fix #9641 adding init strategy for typifiedNames.nomenclaturalSource.citation
- 12:05 PM Revision 33f8af3e (taxeditor): ref #9630: default value for enable description element source is true
- 11:57 AM bug #9618: fix historic NomenclaturalCodeEdition names ICN -> ICBN
- New Ticket: #9640
- 11:57 AM feature request #9640 (New): Updated List ICN/ICBN editions
- As a first step, here is an update for the list.
This is a follow-up to ticket #9618
The new list is based on the... - 10:36 AM Revision 13555b11 (taxeditor): ref #9630: fix time period disabling and supplemental data enabling
- 10:16 AM bug #9638 (Closed): remove trailing full stops from reference titleCaches
- 10:16 AM feature request #9639 (Closed): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 09:39 AM feature request #9639 (Resolved): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 09:50 AM Revision bfcdd64e (taxeditor): ref #8776: fix d&d check for duplicates
- 09:10 AM Revision 436645ad (taxeditor): ref #8952: adapt labels for open in menu to dataset
- 08:45 AM Revision e7075148 (cdm-dataportal): adapting to recent reference cache strategy changes
05/31/2021
- 10:54 PM Revision 621a4c45 (cdmlib): ref #9639 make NomenclaturalSourceFormatter serializable
- 10:30 PM Revision 71be5a6e (cdmlib): ref #9639 replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 10:28 PM feature request #9639 (Closed): Replace fullAbbreviatedTitleCache by nomenclaturalTitleCache for references
- 10:23 PM bug #9638 (Resolved): remove trailing full stops from reference titleCaches
- 04:00 PM bug #9638 (Closed): remove trailing full stops from reference titleCaches
- 06:18 PM Revision d0d49268 (cdmlib): passing missing maxDepth parameter
- 04:58 PM task #9291 (Closed): Clear all unnecesary TypeDesignation.citation entities and citationDetails
- 1760 cases cleaned
- 04:38 PM bug #9368 (Closed): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
- tested at http://test.e-taxonomy.eu/cdmserver/cichorieae/iiif/taxon/aecd40ae-b77d-495b-a63f-a294c8287089/manifest?typ...
- 02:25 PM bug #9368 (Resolved): NullPointerException (NPE) in ManifestComposer.representationPartsToImageContent()
- Applied in changeset commit:cdmlib|7d7ffcf03bdb83d494cc09fdbd1c715353b634cd.
- 04:35 PM bug #9635 (Closed): LazyInitializationException (LIE) in TaxonPortalContoller
- works: http://test.e-taxonomy.eu/cdmserver/cichorieae/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=...
- 01:56 PM bug #9635 (Resolved): LazyInitializationException (LIE) in TaxonPortalContoller
- Applied in changeset commit:cdmlib|1502b93925149b7602fbc039d141ea2faf234af1.
- 04:19 PM Revision 19617222 (cdmlib): ref #9638 remove trailing dots from ref caches (cont.)
- 04:02 PM Revision 02802740 (cdmlib): ref #9638 remove trailing dots from ref caches
- 04:02 PM Revision beab3950 (cdmlib): ref #3764 correct handling of series and volume for section with journal
- 04:02 PM Revision 2300c416 (cdmlib): cleanup
- 04:02 PM Revision b3ef6288 (cdmlib): add memory warning to report in long running tasks
- 04:02 PM Revision b1f26557 (cdmlib): cleanup
- 03:47 PM Revision e7849426 (taxeditor): ref #8776: revert d&d check for duplicates
- 03:47 PM Revision b208934b (taxeditor): ref #8776: paste should only available if it is allowed.
- 03:13 PM Revision 4c59df2f (cdmlib): renaming local vars pageNumber -> pageIndex
- 03:13 PM task #9637 (New): overcome mixed use of pageNumber and pageIndex
- some controller methods are still using "pageNumber".
This should be replaces in all cases by "pageIndex"
Adapt... - 03:05 PM bug #9151 (Closed): invalid pager information in /description/namedAreasInUse webservice
- 02:51 PM bug #9151 (Resolved): invalid pager information in /description/namedAreasInUse webservice
- Applied in changeset commit:cdmlib|b5ddcca9e3953f3fa88188e6f28e171bd40bdf96.
- 02:51 PM Revision b5ddcca9 (cdmlib): fix #9151 fixing deprecated use of pageNumber
- 02:25 PM Revision 7d7ffcf0 (cdmlib): fix #9368 NullPointerException (NPE) in ManifestComposer
- 02:20 PM bug #9630 (Resolved): Make the handling of computed description configurable
- I think now it works, please review
- 01:56 PM Revision 1502b939 (cdmlib): fix #9635 #adding missing init strategy path for misapplications
- 01:06 PM bug #9398 (Closed): ObjectNotFoundException when removing a synonym that is used as NameInSource
- works as expected
- 12:47 PM Revision f736095f (taxeditor): cleanup
- 12:40 PM bug #9629 (Closed): Better handling of OptionalDataException
- This is difficult to review as I can't create the exception that shows if it works or not. However, the code looks ok...
- 12:35 PM Revision f2b0935d (taxeditor): ref #9629 adapting message string
- 12:35 PM Revision 909ec578 (taxeditor): cleanup
- 11:30 AM Revision f37fa367 (taxeditor): ref #8776: fix d&d for not allow duplicates
- 10:58 AM Revision b1d5c0e2 (taxeditor): ref #8776: disable allowDuplicate flag if tree contains duplicates
- 10:50 AM feature request #8474: Make TermCollection.orderRelevant usable for TermTrees
- most of the topics are already fixed in the meanwhile.
- 10:26 AM Revision 3d3a68f0 (taxeditor): ref #8476: disable flat flag if tree has subtrees
- 10:24 AM Revision 8acf6617 (cdmlib): ref #8476: add check for subtrees
- 09:45 AM Revision 5accd008 (cdm-dataportal): more secure location for backups
- 09:37 AM Revision e866a450 (taxeditor): ref #8476: do not allow d&d to a child
- 09:24 AM Revision 88b50562 (taxeditor): ref #8476: do not show create child if tree is flat
- 08:37 AM bug #9636 (Closed): NPE in DeterminationDetailElement
- Checked all kind of specimen and field unit and it worked as expected.
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