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bug #9398

ObjectNotFoundException when removing a synonym that is used as NameInSource

Added by Andreas Müller about 1 month ago. Updated about 1 month ago.

Status:
In Progress
Priority:
New
Assignee:
Category:
taxeditor
Target version:
Start date:
01/18/2021
Due date:
% Done:

0%

Severity:
normal
Found in Version:

Description

Either this is a problem on the order of operations during save. Or it is a general issue with merge where it could be a problem that the name is loaded with taxonBase initialized. Or any other problem.

How to reproduce:

  • Open any taxon with a synonym in name editor
  • use the synonym name as NameUsedInSource of a fact of this taxon
  • save
  • delete the synonym
  • save the taxon again => exception

After reopening the name editor without saving the synonym is still gone (and also in the DB there is a delete event in TaxonBase for the synonym so it looks like the failing merge operation somehow runs ofter the delete operation.

last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/taxonnode.service
last remote request client time : 2021-01-18T14:13:09.862
last remote request response header time : Mon, 18 Jan 2021 14:13:09 GMT
client error time : 2021-01-18T14:13:09.971
login : admin
editor version : 5.19.0.202101172349
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
schema version : 5.18.6.0.20201124
os : Windows Server 2012 R2 6.3 amd64
java : 1.8.0_121
org.eclipse.e4.core.di.InjectionException: org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [eu.etaxonomy.cdm.model.taxon.TaxonBase#18026]
    at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:65)
    at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282)
    at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:247)
    at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:90)
    at org.eclipse.e4.ui.internal.workbench.PartServiceSaveHandler.save(PartServiceSaveHandler.java:57)
    at org.eclipse.ui.internal.WorkbenchWindow$7.save(WorkbenchWindow.java:594)
    at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.savePart(PartServiceImpl.java:1390)
    at eu.etaxonomy.taxeditor.workbench.SaveHandler.execute(SaveHandler.java:38)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
    at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282)
    at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:264)
    at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:132)
    at org.eclipse.e4.core.commands.internal.HandlerServiceHandler.execute(HandlerServiceHandler.java:152)
    at org.eclipse.core.commands.Command.executeWithChecks(Command.java:494)
    at org.eclipse.core.commands.ParameterizedCommand.executeWithChecks(ParameterizedCommand.java:488)
    at org.eclipse.e4.core.commands.internal.HandlerServiceImpl.executeHandler(HandlerServiceImpl.java:210)
    at org.eclipse.e4.ui.workbench.renderers.swt.HandledContributionItem.executeItem(HandledContributionItem.java:433)
    at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem.handleWidgetSelection(AbstractContributionItem.java:454)
    at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem$3.handleEvent(AbstractContributionItem.java:482)
    at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
    at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079)
    at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4236)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3824)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
    at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
    at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
    at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
    at eu.etaxonomy.taxeditor.Application.start(Application.java:20)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
    at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
    at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
Caused by: org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [eu.etaxonomy.cdm.model.taxon.TaxonBase#18026]
    at org.hibernate.boot.internal.StandardEntityNotFoundDelegate.handleEntityNotFound(StandardEntityNotFoundDelegate.java:28)
    at org.hibernate.event.internal.DefaultLoadEventListener.load(DefaultLoadEventListener.java:227)
    at org.hibernate.event.internal.DefaultLoadEventListener.proxyOrLoad(DefaultLoadEventListener.java:278)
    at org.hibernate.event.internal.DefaultLoadEventListener.doOnLoad(DefaultLoadEventListener.java:121)
    at org.hibernate.event.internal.DefaultLoadEventListener.onLoad(DefaultLoadEventListener.java:89)
    at org.hibernate.internal.SessionImpl.fireLoad(SessionImpl.java:1142)
    at org.hibernate.internal.SessionImpl.internalLoad(SessionImpl.java:1025)
    at org.hibernate.type.EntityType.resolveIdentifier(EntityType.java:641)
    at org.hibernate.type.EntityType.resolve(EntityType.java:433)
    at org.hibernate.type.ManyToOneType.resolve(ManyToOneType.java:227)
    at org.hibernate.type.EntityType.replace(EntityType.java:332)
    at org.hibernate.type.CollectionType.replaceElements(CollectionType.java:518)
    at org.hibernate.type.CollectionType.replace(CollectionType.java:663)
    at org.hibernate.type.TypeHelper.replace(TypeHelper.java:177)
    at org.hibernate.event.internal.DefaultMergeEventListener.copyValues(DefaultMergeEventListener.java:393)
    at org.hibernate.event.internal.DefaultMergeEventListener.entityIsDetached(DefaultMergeEventListener.java:327)
    at org.hibernate.event.internal.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:169)
    at org.hibernate.internal.SessionImpl.fireMerge(SessionImpl.java:853)
    at org.hibernate.internal.SessionImpl.merge(SessionImpl.java:835)
    at org.hibernate.engine.spi.CascadingActions$6.cascade(CascadingActions.java:260)
    at org.hibernate.engine.internal.Cascade.cascadeToOne(Cascade.java:423)
    at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:348)
    at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:187)
    at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:136)
    at org.hibernate.event.internal.DefaultMergeEventListener.cascadeOnMerge(DefaultMergeEventListener.java:460)
    at org.hibernate.event.internal.DefaultMergeEventListener.entityIsDetached(DefaultMergeEventListener.java:326)
    at org.hibernate.event.internal.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:169)
    at org.hibernate.internal.SessionImpl.fireMerge(SessionImpl.java:853)
    at org.hibernate.internal.SessionImpl.merge(SessionImpl.java:835)
    at org.hibernate.engine.spi.CascadingActions$6.cascade(CascadingActions.java:260)
    at org.hibernate.engine.internal.Cascade.cascadeToOne(Cascade.java:423)
    at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:348)
    at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:187)
    at org.hibernate.engine.internal.Cascade.cascadeCollectionElements(Cascade.java:456)
    at org.hibernate.engine.internal.Cascade.cascadeCollection(Cascade.java:388)
    at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:351)
    at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:187)
    at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:136)
    at org.hibernate.event.internal.DefaultMergeEventListener.cascadeOnMerge(DefaultMergeEventListener.java:460)
    at org.hibernate.event.internal.DefaultMergeEventListener.entityIsDetached(DefaultMergeEventListener.java:326)
    at org.hibernate.event.internal.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:169)
    at org.hibernate.internal.SessionImpl.fireMerge(SessionImpl.java:853)
    at org.hibernate.internal.SessionImpl.merge(SessionImpl.java:835)
    at org.hibernate.engine.spi.CascadingActions$6.cascade(CascadingActions.java:260)
    at org.hibernate.engine.internal.Cascade.cascadeToOne(Cascade.java:423)
    at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:348)
    at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:187)
    at org.hibernate.engine.internal.Cascade.cascadeCollectionElements(Cascade.java:456)
    at org.hibernate.engine.internal.Cascade.cascadeCollection(Cascade.java:388)
    at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:351)
    at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:187)
    at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:136)
    at org.hibernate.event.internal.DefaultMergeEventListener.cascadeOnMerge(DefaultMergeEventListener.java:460)
    at org.hibernate.event.internal.DefaultMergeEventListener.entityIsDetached(DefaultMergeEventListener.java:326)
    at org.hibernate.event.internal.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:169)
    at org.hibernate.internal.SessionImpl.fireMerge(SessionImpl.java:853)
    at org.hibernate.internal.SessionImpl.merge(SessionImpl.java:835)
    at org.hibernate.engine.spi.CascadingActions$6.cascade(CascadingActions.java:260)
    at org.hibernate.engine.internal.Cascade.cascadeToOne(Cascade.java:423)
    at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:348)
    at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:187)
    at org.hibernate.engine.internal.Cascade.cascadeCollectionElements(Cascade.java:456)
    at org.hibernate.engine.internal.Cascade.cascadeCollection(Cascade.java:388)
    at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:351)
    at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:187)
    at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:136)
    at org.hibernate.event.internal.DefaultMergeEventListener.cascadeOnMerge(DefaultMergeEventListener.java:460)
    at org.hibernate.event.internal.DefaultMergeEventListener.entityIsDetached(DefaultMergeEventListener.java:326)
    at org.hibernate.event.internal.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:169)
    at org.hibernate.internal.SessionImpl.fireMerge(SessionImpl.java:853)
    at org.hibernate.internal.SessionImpl.merge(SessionImpl.java:835)
    at org.hibernate.engine.spi.CascadingActions$6.cascade(CascadingActions.java:260)
    at org.hibernate.engine.internal.Cascade.cascadeToOne(Cascade.java:423)
    at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:348)
    at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:187)
    at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:136)
    at org.hibernate.event.internal.DefaultMergeEventListener.cascadeOnMerge(DefaultMergeEventListener.java:460)
    at org.hibernate.event.internal.DefaultMergeEventListener.entityIsDetached(DefaultMergeEventListener.java:326)
    at org.hibernate.event.internal.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:169)
    at org.hibernate.event.internal.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:68)
    at org.hibernate.internal.SessionImpl.fireMerge(SessionImpl.java:843)
    at org.hibernate.internal.SessionImpl.merge(SessionImpl.java:825)
    at org.hibernate.internal.SessionImpl.merge(SessionImpl.java:830)
    at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.merge(CdmEntityDaoBase.java:289)
    at eu.etaxonomy.cdm.api.service.ServiceBase.merge(ServiceBase.java:234)
    at eu.etaxonomy.cdm.api.service.ServiceBase.merge(ServiceBase.java:42)
    at sun.reflect.GeneratedMethodAccessor1795.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
    at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:283)
    at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
    at com.sun.proxy.$Proxy664.merge(Unknown Source)
    at sun.reflect.GeneratedMethodAccessor1795.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
    at com.sun.proxy.$Proxy1038.merge(Unknown Source)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
    at eu.etaxonomy.cdm.api.remoting.DebuggingRemoteInvocationExecutor.invoke(DebuggingRemoteInvocationExecutor.java:52)
    at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
    at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
    at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:80)
    at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
    at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:967)
    at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:901)
    at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970)
    at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:872)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
    at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:846)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
    at org.eclipse.jetty.servlet.ServletHolder$NotAsyncServlet.service(ServletHolder.java:1395)
    at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:755)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1617)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:317)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:127)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:91)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
    at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
    at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
    at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
    at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
    at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:215)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
    at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
    at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
    at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
    at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
    at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:214)
    at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:177)
    at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:347)
    at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:263)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604)
    at eu.etaxonomy.cdm.servlet.DateHeaderFilter.doFilter(DateHeaderFilter.java:55)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604)
    at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:197)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1596)
    at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:545)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
    at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:590)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:235)
    at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1607)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:233)
    at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1297)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:188)
    at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:485)
    at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1577)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:186)
    at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1212)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
    at eu.etaxonomy.cdm.server.logging.InstanceLogWrapper.handle(InstanceLogWrapper.java:47)
    at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:221)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
    at org.eclipse.jetty.server.Server.handle(Server.java:500)
    at org.eclipse.jetty.server.HttpChannel.lambda$handle$1(HttpChannel.java:383)
    at org.eclipse.jetty.server.HttpChannel.dispatch(HttpChannel.java:547)
    at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:375)
    at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:270)
    at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:311)
    at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103)
    at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:336)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:313)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:171)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:129)
    at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:388)
    at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:806)
    at org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:938)
    at java.lang.Thread.run(Thread.java:748)
    at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
    at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
    at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
    at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:158)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
    at com.sun.proxy.$Proxy49.merge(Unknown Source)
    at eu.etaxonomy.taxeditor.editor.e4.TaxonEditorInputE4.merge(TaxonEditorInputE4.java:428)
    at eu.etaxonomy.taxeditor.editor.name.e4.TaxonNameEditorE4.save(TaxonNameEditorE4.java:420)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
    ... 48 more

Related issues

Related to Edit - feature request #6308: Add configuration dialog for the deletion of synonyms in name editor Closed 01/03/2017

History

#1 Updated by Andreas Müller about 1 month ago

  • Related to feature request #6308: Add configuration dialog for the deletion of synonyms in name editor added

#2 Updated by Andreas Müller about 1 month ago

  • Description updated (diff)

#3 Updated by Katja Luther about 1 month ago

I think the problem is that the name used as "name used in source" still have the information to be the name of the deleted synonym during the merge of the taxon. So the delete of the synonym takes place as it should but the merge is skipped.

#4 Updated by Katja Luther about 1 month ago

  • Status changed from New to In Progress

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