Activity
From 03/18/2021 to 04/16/2021
04/16/2021
- 10:46 PM bug #9583 (Closed): Fix formatting of parent area in condensed distributions string if subareas have various status but at least 1 area has status native
- To me the result looks like expected. Reopen if not yet fully fixe.
- 07:45 PM bug #9583 (Resolved): Fix formatting of parent area in condensed distributions string if subareas have various status but at least 1 area has status native
- Applied in changeset commit:cdmlib|e2fafd15b80ee6fc8dc2cec59f0d74389ea48fe6.
- 07:42 PM bug #9583 (Closed): Fix formatting of parent area in condensed distributions string if subareas have various status but at least 1 area has status native
- This issue is described in #8297#note-15 and has not yet been handled there.
Examples are **Tu(A** -E) or **Ca**(?C ... - 10:13 PM feature request #5573 (Resolved): Cache Strategy for Media Specimen required
- 09:49 PM feature request #9541 (Resolved): Improve referencing objects handling
- 09:20 PM feature request #9537 (Resolved): Implement ratioToStructure in TaxEditor
- I guess this is for review.
- 09:19 PM bug #9526 (Closed): Sort order in E+M distribution string should be strictly alphabetic
- I guess this is fixed. We may reopen if new issues arise.
04/15/2021
- 05:58 PM task #9582 (New): provide runnable dataportal installation bundled with composer
- [Composer](https://getcomposer.org) is the de-facto standard for managing php dependencies.
Use composer to create... - 03:05 PM task #9579 (Worksforme): restore css3pie if needed
- It is working again with compass 0.12.7 on the integration server as well as locally.
The error documented in the ... - 12:29 PM feature request #9570 (Closed): Use tagged text for NameTypeDesginations name part
- I did not encounter any problems in phycobank which are due to these changes.
Ticket can be closed - 12:27 PM task #9490 (Closed): avoid rank entity in TaxonNameParts
- done
- 12:19 PM bug #9504 (Closed): Changing term tree title is not persisted
- works as expected now
- 10:38 AM bug #9468 (Worksforme): specimen type of existing name cannot be saved
- has been solved meanwhile in another context
- 08:37 AM bug #9578 (Closed): Multiselect for input of distribution editor creates duplicates
- looks fine and works as expected
04/14/2021
- 10:51 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- I tested now and it seems to work as expected. Please also review.
- 06:21 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Katja Luther wrote:
> Sorry it is the method listChildrenOfRecursive, there the node is added to the result:
>
> ... - 04:50 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Andreas Müller wrote:
> Katja Luther wrote:
> > The criteria for getting the children is
> >
> > ~~~ java
> > ... - 04:43 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Katja Luther wrote:
> The criteria for getting the children is
>
> ~~~ java
> crit.add( Restrictions.lik... - 02:22 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Katja Luther wrote:
> > > > please re... - 02:04 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > please review my changes.
> >
> > Hav... - 01:57 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- Andreas Müller wrote:
> Katja Luther wrote:
> > please review my changes.
>
> Have you tested this? It does not ... - 12:16 PM bug #9578 (Feedback): Multiselect for input of distribution editor creates duplicates
- Katja Luther wrote:
> please review my changes.
Have you tested this? It does not work. And it can't work as pare... - 09:53 AM bug #9578: Multiselect for input of distribution editor creates duplicates
- Katja Luther wrote:
> Andreas Müller wrote:
> > This works now for taxon nodes not sharing duplicates (e.g. for sib... - 09:52 AM bug #9578: Multiselect for input of distribution editor creates duplicates
- please review my changes.
- 09:48 AM bug #9578: Multiselect for input of distribution editor creates duplicates
- Andreas Müller wrote:
> This works now for taxon nodes not sharing duplicates (e.g. for sibblings). It still shows d... - 10:48 PM bug #9581 (New): Strange focus behavior in taxon navigator after right mouse click
- How to reproduce:
* Open referencing objects view
* Select 2 taxa in navigator and open in distribution editor vi... - 06:38 PM bug #9468: specimen type of existing name cannot be saved
- Checked it in the Test system. The described error does not occur anymore. The ticket can be closed.
(Maybe it occur... - 05:33 PM bug #9468 (Feedback): specimen type of existing name cannot be saved
- seems to be fixed already, please can you verify?
- 05:28 PM bug #7943: TypeDesignationsEditor Select Reference for figure
- still an open issue
- 05:19 PM bug #9568 (Closed): TypeSpecimenEditor: Selection of a reference of an typified image
- 05:18 PM feature request #7599 (Closed): treeView for specimen data in dataportal
- appart from the questions discussed in #9579 this ticket is now complete.
- 05:16 PM bug #9555 (Closed): symbols for record basis (and kind of unit) in derivation tree
- new ticket for further symbols #9580
- 05:15 PM bug #9580 (New): more symbols for record basis (and kind of unit) in derivation tree - coninuation
- this is a continuation ticket for #9555
show symbols with the units-header per record basis and kind of unit if ne... - 04:01 PM bug #9504 (Resolved): Changing term tree title is not persisted
- This should be fixed now. Please review.
- 12:53 PM bug #9504: Changing term tree title is not persisted
- Maybe we can have a look to this again, now, as there is still some time for the release. If not possible to solve be...
- 02:10 PM task #9579: restore css3pie if needed
- before doing the release we need to decide for how important this is.
The compass installlation on the integration... - 12:47 PM bug #8233 (In Progress): [Follow up] Creating type duplicates
- The persistent identifier issue works now. I set the ticket back to "In progress" as there are other remaining issues.
- 12:38 PM feature request #9537 (Feedback): Implement ratioToStructure in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > Also the ... - 09:07 AM feature request #9537: Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also the button checks if a vocabulary... - 09:06 AM feature request #9537 (Resolved): Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Also the formatting (label) for the ch...
04/13/2021
- 10:22 PM bug #9568: TypeSpecimenEditor: Selection of a reference of an typified image
- Selection of a reference of an typified image in the TypeSpecimenEditor works now as expected, thanks. The ticket can...
- 04:18 PM bug #9568: TypeSpecimenEditor: Selection of a reference of an typified image
- please test once the server is updated (~1h from now on)
- 03:05 PM bug #9568 (Resolved): TypeSpecimenEditor: Selection of a reference of an typified image
- Applied in changeset commit:cdm-vaadin|e8dcb430eb56a577c61ef744ce689094e2093d90.
- 03:03 PM bug #9568: TypeSpecimenEditor: Selection of a reference of an typified image
- This is an regression introduced in the context of #9480
- 04:48 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Also the formatting (label) for the character does not change yet e... - 04:45 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Katja Luther wrote:
> Andreas Müller wrote:
> > Also the button checks if a vocabulary is chosen. This is not neces... - 03:10 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> Also the formatting (label) for the character does not change yet even if it has no protecte... - 03:05 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> Also the button checks if a vocabulary is chosen. This is not necessary as the character alr... - 03:04 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> Finally, if possible, the new button should only be enabeled if a structure and a character ... - 03:04 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Andreas Müller wrote:
> The ratio to is currently only shown after the character editor was saved. It should be show... - 01:51 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Finally, if possible, the new button should only be enabeled if a structure and a character node is selected.
- 12:24 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Also the formatting (label) for the character does not change yet even if it has no protected titleCache.
- 12:22 PM feature request #9537: Implement ratioToStructure in TaxEditor
- Also the button checks if a vocabulary is chosen. This is not necessary as the character already exists and only is u...
- 12:22 PM feature request #9537 (Feedback): Implement ratioToStructure in TaxEditor
- The ratio to is currently only shown after the character editor was saved. It should be shown immediately after press...
- 04:31 PM bug #9556 (Closed): occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- can be closed now
- 04:23 PM bug #9556 (Resolved): occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- after the commit:6d3c3fa9 which is rather related to `listRootUnitDTOsByAssociatedTaxon()` the web services should no...
- 04:16 PM feature request #9332 (Closed): Rename TypeDesignationBase.source to .designationSource
- should be fixed now
- 03:40 PM feature request #9332 (Resolved): Rename TypeDesignationBase.source to .designationSource
- the renamed field is causing LIEs in cdm-vaadin, so this ticket is not fully solved.
e.g.
http://test.e-taxonom... - 02:26 PM bug #8233: [Follow up] Creating type duplicates
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> >>...
> > > This is how it was meant. The... - 02:08 PM bug #8233 (Feedback): [Follow up] Creating type duplicates
- Katja Luther wrote:
> Andreas Müller wrote:
>>...
> > This is how it was meant. Therefore I removed the first "NK"... - 02:07 PM bug #8233: [Follow up] Creating type duplicates
- Sorry I missed to push some files, please review now.
- 09:25 AM bug #8233: [Follow up] Creating type duplicates
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > I add the "fast" tag for the last issu... - 12:04 PM bug #9578: Multiselect for input of distribution editor creates duplicates
- This works now for taxon nodes not sharing duplicates (e.g. for sibblings). It still shows duplicates if e.g. one sel...
04/12/2021
- 08:35 PM bug #8233: [Follow up] Creating type duplicates
- Katja Luther wrote:
> Andreas Müller wrote:
> > I add the "fast" tag for the last issue ("Add "Preferred Stable Ide... - 03:35 PM bug #8233: [Follow up] Creating type duplicates
- Andreas Müller wrote:
> I add the "fast" tag for the last issue ("Add "Preferred Stable Identifier" to the list of a...
04/06/2021
- 10:43 PM bug #9555 (In Progress): symbols for record basis (and kind of unit) in derivation tree
- only some symbols are missing
- 10:43 PM bug #9555 (Resolved): symbols for record basis (and kind of unit) in derivation tree
- 10:35 PM task #9579 (Worksforme): restore css3pie if needed
- during the implemetation of the derivation tree view for #7599 and #6866 it was necessary to upgrade `compass` interm...
04/02/2021
- 08:27 AM bug #9504: Changing term tree title is not persisted
- Actually I could not find why the newly created tree can not be edited before saving. When the tree is persisted you ...
- 01:08 AM bug #9578 (Resolved): Multiselect for input of distribution editor creates duplicates
- Applied in changeset commit:cdmlib|ba87a40e9a4066100dff6e13c5aebb2b1782e4b6.
- 01:00 AM bug #9578 (Closed): Multiselect for input of distribution editor creates duplicates
- if 1 record select only this record is returned
if 2 records are selected 1 record is duplicated
if 3 records a...
04/01/2021
- 03:51 PM bug #9577 (New): Enable copy for multiple cell selection in bulk editor
- see #9544
- 03:49 PM feature request #9544 (Closed): In bulkeditor the strings should be copyable
- To have this issue in the actual release I close this ticket and create a new ticket for the multiselect, because I c...
- 02:37 PM feature request #9537 (Resolved): Implement ratioToStructure in TaxEditor
- This should be fixed.
The ratio to structure can be added in character editor by using the button in character edi... - 11:57 AM task #9576 (Rejected): Add tests for homotypic group name comparator
- from #9567:
Maybe you can still add some tests for HomotypicGroupNameComparator which explicitly handle specific i... - 11:56 AM task #9567 (Closed): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- this issue seems to be fixed. add a new ticket for the tests.
- 11:55 AM feature request #9571 (Closed): Improve sec-formatting for taxa with webpage secundum
- this works as expected.
03/31/2021
- 06:50 PM feature request #9537 (In Progress): Implement ratioToStructure in TaxEditor
- Implemented a button to add ratio to structure to character.
Still needed is a button in details view to remove th... - 12:17 PM feature request #9575 (Closed): Allow flag to include authors in taxon and name search in TaxEditor
- In #6128 the possibility to include authors were added to the according service. We should also allow in TaxEditor de...
- 12:15 PM feature request #9574 (Closed): Add html tags for names in NameTypeDesignation in CdmLightExport
- this is fixed.
Walter checked it. - 12:12 PM feature request #9574 (Closed): Add html tags for names in NameTypeDesignation in CdmLightExport
- mail:
noch eine Fragen, die man eventuell schnell lösen könnte (für mich recht kompliziert): Kannst Du die als Typ... - 11:26 AM feature request #9544 (Feedback): In bulkeditor the strings should be copyable
- This works as expected. Only multiple cell selection still has the old behavior. If this is very easy to fix, please ...
- 11:18 AM bug #9504: Changing term tree title is not persisted
- Katja Luther wrote:
> Andreas Müller wrote:
> > This still does not work
>
> I tested on nightly and it works? D... - 10:06 AM bug #9504: Changing term tree title is not persisted
- Andreas Müller wrote:
> By the way, it would good to use an underscore before the default title like "_New feature t... - 09:32 AM bug #9504: Changing term tree title is not persisted
- Andreas Müller wrote:
> This still does not work
I tested on nightly and it works? Did you update? - 11:00 AM feature request #9331 (Closed): Distinguish DescriptionElementSource and NamedSource
- The adaptions in editor work and the class structure looks good.
- 10:55 AM feature request #9561 (Closed): In name and taxon search if titleCache is protected the search should run on titleCache also
- works now as expected.
- 10:46 AM feature request #9570: Use tagged text for NameTypeDesginations name part
- for the cdmLight usecase it works as expected. Maybe Ak should have a look whether the implementation works for phyco...
- 10:34 AM feature request #9515 (Closed): Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- adapted the code, tested and worked as expected.
- 10:33 AM bug #9531 (Closed): Add Names in OriginalSpelling to the delete configuration
- adapt the error message.
- 10:16 AM bug #9573 (New): Space between collection sections and elements above and behind are too large
- see #9549 and others
- 10:15 AM feature request #9549 (Closed): Reduce visible fields for nomenclatural source and secundum source in TaxEditor
- Andreas Müller wrote:
> This works. Only there is much space between "detail" and "Links" (for secundum reference) a... - 10:06 AM feature request #9572 (Closed): After creating a new term tree set the focus to the new tree
- ... and in details view in title cache field
03/30/2021
- 11:02 PM feature request #9571: Improve sec-formatting for taxa with webpage secundum
- this should be fixed, can you please review
- 11:01 PM feature request #9571 (Resolved): Improve sec-formatting for taxa with webpage secundum
- Applied in changeset commit:cdmlib|6202dea80501881fb388073b428c15c4c0fc255b.
- 10:48 PM feature request #9571 (Closed): Improve sec-formatting for taxa with webpage secundum
- WGB:
mir ist gerade aufgefallen, dass es wohl keine solche Short-Citation (anlaog zu Autor-Nachname oder Teamnachn... - 09:06 PM feature request #9570: Use tagged text for NameTypeDesginations name part
- Please review. If anything doesn't work as expected please add test to newly created test class.
- 09:02 PM feature request #9570 (Resolved): Use tagged text for NameTypeDesginations name part
- Applied in changeset commit:cdmlib|fe3e32ab2e841cc1ca2fbec4734e32e0ee8c52f4.
- 09:01 PM feature request #9570 (Closed): Use tagged text for NameTypeDesginations name part
- ... and prepare for tagged text for other type designation categories
- 03:00 PM feature request #9544 (Resolved): In bulkeditor the strings should be copyable
- 02:27 PM task #9569 (New): Delete taxon and delete name should use the same UI and same semantics for deleting names
- Currently the delete name configurator for deleting taxa and names differ currently. E.g. the delete type designation...
- 02:13 PM bug #9531 (Feedback): Add Names in OriginalSpelling to the delete configuration
- In the error message we should use "... original spelling" , not camel case.
Except for this the ticket can be clo... - 01:45 PM bug #9562 (Closed): Publish flag of field units and derived units are not handled correctly
- This seems to work
- 01:40 PM bug #9533 (Closed): NPE when reusing name for new taxon
- This seems to work now
- 01:32 PM feature request #9540: Handle classification source as source in TaxEditor
- I guess this is fast as it is mostly c&p from other single sources
- 01:29 PM feature request #9328 (Closed): Adapt Editor to switch to originalSource for taxon secundum
- Works as expected.
- 01:26 PM bug #9504: Changing term tree title is not persisted
- By the way, it would good to use an underscore before the default title like "_New feature tree". Also having the foc...
- 01:25 PM bug #9504 (Feedback): Changing term tree title is not persisted
- This still does not work
- 01:18 PM feature request #9545 (Closed): Remove "External Link type" completely
- 01:03 PM feature request #9549 (Feedback): Reduce visible fields for nomenclatural source and secundum source in TaxEditor
- This works. Only there is much space between "detail" and "Links" (for secundum reference) and between "details" and ...
- 12:37 PM task #9567 (Resolved): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- The mentioned issues should be fixed.
Maybe you can still add some tests for HomotypicGroupNameComparator which ex... - 12:27 PM task #9567 (Feedback): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- I fixed the potetial NPE and adapted the compare to include hybrid sign if names do not differ in any other part.
- 12:23 PM task #9567 (Resolved): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Applied in changeset commit:cdmlib|e0c610f10302b0c755f509a33bd3df645077ea69.
- 11:42 AM task #9567: Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- I would add another comparison if the first two comparisons return 0 to compare the not normalized titleCache, do you...
- 11:24 AM task #9567: Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > In handleSameBasionym a return was missi... - 10:36 AM task #9567: Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Andreas Müller wrote:
> Katja Luther wrote:
> > In handleSameBasionym a return was missing. After fixing that the r... - 10:11 AM task #9567: Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Katja Luther wrote:
> In handleSameBasionym a return was missing. After fixing that the result is correct.
> But ma... - 08:46 AM task #9567 (Feedback): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- In handleSameBasionym a return was missing. After fixing that the result is correct.
But maybe the NPE should be avo... - 11:53 AM bug #9566 (Closed): Handle nomenclatural standing correctly in cdmlight / sorting algorithms
- this works now as expected, also for the homotypic groups in editor.
- 11:53 AM bug #9441 (Closed): Move names with invalid designation name relationships to the end in taxon comparator
- this works now as expected, also for the homotypic groups in editor.
- 10:28 AM bug #9568 (Closed): TypeSpecimenEditor: Selection of a reference of an typified image
- Vaadin TypeSpecimenEditor (Test as well as production):
With change of the typification reference with preselected...
03/29/2021
- 09:15 PM bug #9566 (Resolved): Handle nomenclatural standing correctly in cdmlight / sorting algorithms
- Please review.
- 06:58 PM bug #9566 (Closed): Handle nomenclatural standing correctly in cdmlight / sorting algorithms
- This includes using the correct symbol whenenver a "name" is a designation only.
And sorting designations to the e... - 09:13 PM task #9567: Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- please review
- 08:46 PM task #9567 (Resolved): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Applied in changeset commit:cdmlib|8432293fbc9496c0b4c50bda3516ef9e0ac3b984.
- 08:46 PM task #9567 (Closed): Unify HomotypicGroupTaxonComparator and HomotypicGroupNameComparator
- Both classes have mostly the same code so they are very redundant. HGNameComparator seems to be an adapted copy of HG...
- 06:49 PM feature request #9561: In name and taxon search if titleCache is protected the search should run on titleCache also
- I adapted the search. Can you please test again. I havn't tested yet in TaxEditor, only in test class (see code).
- 06:45 PM feature request #9561 (Resolved): In name and taxon search if titleCache is protected the search should run on titleCache also
- Applied in changeset commit:cdmlib|571eb9f1582883152db414442c0f878d7925280b.
- 10:50 AM feature request #9561: In name and taxon search if titleCache is protected the search should run on titleCache also
- Yes, I also thought about this but did not implement it such as I did not want to have all the subspecies in the resu...
- 10:39 AM feature request #9561 (Feedback): In name and taxon search if titleCache is protected the search should run on titleCache also
- It works as expected, but searching without authors for a titlecache with authors does not match. Maybe we should add...
- 11:06 AM feature request #8968 (Closed): filter Bulk editor for created by
- created by moved, close this ticket.
- 10:53 AM bug #9533 (Resolved): NPE when reusing name for new taxon
- Andreas Müller wrote:
> Andreas Müller wrote:
> > When deleting the selected name again I now get another NPE:
>
... - 10:46 AM bug #9556: occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- I removed that the derivatives are added to the fieldUnitDto in loadFieldUnitDto().
- 10:42 AM task #9558 (Closed): General tests for cdmlight export
- Looks fine.
- 08:38 AM bug #9565 (New): Revise name render templates selection strategy
- In the flora of cuba the syn-sec. references are expected to be shown:
http://portal.cybertaxonomy.org/flora-cuba/...
03/26/2021
- 04:23 PM task #9564 (New): synonymy: suppress output of sec references if it is equal with the accepted taxon sec ref
- "Da wäre die Möglichkeit interessant, nur die sec.Refs. anzuzeigen, die NICHT die gleiche sec.-Ref. haben, die also d...
- 04:19 PM bug #9556: occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- so we should modify this service method so that it no longer add the derivatives or is there an alternative service m...
- 04:07 PM bug #9556: occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- Andreas Kohlbecker wrote:
> reopening this issue since `loadFieldUnitDTO()` is being used in the Taxeditor
>
> @K... - 03:57 PM bug #9556: occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- DerivedUnitFacadeController.doGetFieldObjectMediaDTO() is no longer using loadFieldUnitDTO see commit:3309605f
there... - 02:32 PM bug #9556 (Feedback): occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- reopening this issue since `loadFieldUnitDTO()` is being used in the Taxeditor
@Katja: are the derivatives of the ... - 02:26 PM bug #9556 (Rejected): occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- since the intermediate units are not used at all by consuming methods, they should be skipped completely.
- 12:16 PM bug #9556: occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- This method is kind of misused: After solving #9557 it is only being used by `.DerivedUnitFacadeController.doGetField...
- 04:13 PM task #6208 (New): Implement synonymy service responding with DTO
- 04:07 PM task #6208: Implement synonymy service responding with DTO
- I think we should reopen this ticket since we will be working on this this year
- 04:10 PM bug #9562: Publish flag of field units and derived units are not handled correctly
- this should be fixed. The problem was that the value for the publish checkbox was taken from DerivedUnitFace.isPublis...
- 04:07 PM bug #9562 (Resolved): Publish flag of field units and derived units are not handled correctly
- Applied in changeset commit:taxeditor|6dd14e6fb067f81fb1deba7377d5bf81312a5991.
- 03:59 PM bug #9562 (Closed): Publish flag of field units and derived units are not handled correctly
- when editing the field unit publish flag the publish flag of the derivate units are changed, too and/or not saved cor...
- 04:03 PM bug #9563 (New): MediaDTO factory method supports media representation preferences
- see comment in code:
~~~java
/**
* Creates a list of DTOs from the Media entity.
* For each Medi... - 02:00 PM bug #9559: OccurrenceServiceImpl.findRootUnitDTOs() and related methods suppress unpublished units
- Andreas Kohlbecker wrote:
> The priority of this ticket depends on the question if there are projects with units whi... - 01:57 PM bug #9559 (New): OccurrenceServiceImpl.findRootUnitDTOs() and related methods suppress unpublished units
- I think this ticket should be checked against #8424 and #4484 if they are duplicates of each other
- 11:12 AM bug #9559 (Feedback): OccurrenceServiceImpl.findRootUnitDTOs() and related methods suppress unpublished units
The priority of this ticket depends on the question if there are projects with units which must be undisclosed and ...- 11:09 AM bug #9559 (New): OccurrenceServiceImpl.findRootUnitDTOs() and related methods suppress unpublished units
- All methods in OccurrenceServiceImpl which deliver units for the data portal via web services need to filter out unpu...
- 01:54 PM feature request #9561: In name and taxon search if titleCache is protected the search should run on titleCache also
- Please review
- 12:08 PM feature request #9561 (Resolved): In name and taxon search if titleCache is protected the search should run on titleCache also
- Applied in changeset commit:cdmlib|9bf89673c622c6823cefe921429b1f2438dc3c0a.
- 12:06 PM feature request #9561 (Closed): In name and taxon search if titleCache is protected the search should run on titleCache also
- ... otherwise users may think the name does not exist yet if the nameCache is not filled correctly.
Currently name... - 12:38 PM bug #9504 (Resolved): Changing term tree title is not persisted
- this is fixed
- 12:00 PM bug #9557 (Closed): implement occurrence/{uuid}/rootUnitDTOs
- 10:39 AM bug #9557: implement occurrence/{uuid}/rootUnitDTOs
- the web service `occurrence/{uuid}/rootUnitDTOs` and service method `OccurrenceServiceImpl.findRootUnitDTOs()` are mi...
- 11:48 AM feature request #9544: In bulkeditor the strings should be copyable
- this is implemented, please review.
- 10:08 AM feature request #9545: Remove "External Link type" completely
- please review
- 10:08 AM feature request #9545 (Resolved): Remove "External Link type" completely
- Applied in changeset commit:taxeditor|3470949e9aa012a03d23c1b0e44603ed698ee056.
- 10:00 AM feature request #9328 (Resolved): Adapt Editor to switch to originalSource for taxon secundum
- this is implemented, please review.
- 09:59 AM feature request #9549 (Resolved): Reduce visible fields for nomenclatural source and secundum source in TaxEditor
- this is fixed, please review.
03/25/2021
- 11:32 PM task #9558 (Resolved): General tests for cdmlight export
- This is fixed. Please review.
- 11:31 PM task #9558 (Closed): General tests for cdmlight export
- all tests for cdmlight export should include an exception, error and warning test.
Also a fullDataSample (FullCove... - 05:54 PM bug #9557 (Closed): implement occurrence/{uuid}/rootUnitDTOs
- see http://int.e-taxonomy.eu/cdmserver/integration_reference/occurrence/8259122c-7140-44f3-980e-1a6506ce8f50/fieldUni...
- 05:52 PM bug #9556 (Closed): occurrence/{uuid}/fieldUnitDTOs web service adds duplicate units to response
- see http://localhost:8080/occurrence/8585081c-b73b-440b-b349-582845cf3fb4/fieldUnitDTOs.json
the response data ma... - 05:22 PM bug #9555 (Closed): symbols for record basis (and kind of unit) in derivation tree
- show symbols with the units-header per record basis and kind of unit if needed
A quickly assembled list:
**reco... - 04:03 PM feature request #9554 (New): option to suppress type designations in portal
- in the http://portal.cybertaxonomy.org/flora-cuba/ typedesignations are just hidden per css. The related footnotes ar...
- 04:01 PM bug #9553: Synonymy is missing in table of content
- The same is true for Polyt. Keys
- 03:50 PM bug #9553 (New): Synonymy is missing in table of content
- Configuration:
* Tabless Taxon page
* Synonym as separate tab
==> the synonymy is missing in the TOC
htt... - 01:09 PM bug #9550 (Closed): Recognize PhytoKeys and PLoS ONE in name parser
- Test run as expected.
- 12:48 PM feature request #9552: Add e-article number to Reference
- ERS:
... und so etwas ist auch nicht parsable (fascicle > 4 Zeichen): Lepyrodiclis alinihatii Menemen & al. in Nor... - 09:38 AM feature request #9552 (New): Add e-article number to Reference
- Journals publishing online have started giving numbers for there electronically published articles which seem to have...
03/24/2021
- 09:58 PM task #9014 (In Progress): Unparsable name strings
- 04:45 PM bug #9551 (Resolved): Recognize "series" in article parsing
- Applied in changeset commit:cdmlib|d9aa603aade3ded73eedd57d346e478e820073a4.
- 04:16 PM bug #9551 (Resolved): Recognize "series" in article parsing
- ... maybe also books etc.
- 02:20 PM bug #9550 (Resolved): Recognize PhytoKeys and PLoS ONE in name parser
- Applied in changeset commit:cdmlib|a119dab72f372797dc5e8afd8f34c53baa3e7440.
- 02:19 PM bug #9550 (Closed): Recognize PhytoKeys and PLoS ONE in name parser
- e.g. Pseudopodospermum baeticum (DC.) Zaika & al. in PhytoKeys 137: 68. 2020
- 11:25 AM feature request #8920: Make reference URL available in details view
- WGB:
Erstmal zum Direktlink zur Literatur-URL aus dem Details-VIew – fände ich wirklich toll (siehe ganz unten), d... - 11:19 AM feature request #9549: Reduce visible fields for nomenclatural source and secundum source in TaxEditor
- WGB:
Wenn Ihr an dieser Stelle schon am Arbeiten seid: Nochmal zum neuen Dialog, mit dem ich gar nicht glücklich b... - 11:15 AM feature request #9549 (Closed): Reduce visible fields for nomenclatural source and secundum source in TaxEditor
- Currently it shows the fields "type" and "description" for links and "original information", "idNamespace" and "idInS...
- 11:03 AM feature request #9548 (New): Handle links to websites, webapps or similar in image galleries (simple and UV)
- Sometimes users use links to websites within an image gallery. These usually are identified by mime type "text/html",...
- 10:59 AM feature request #9547 (New): Show warning in TaxEditor if a MediaRepresentation can not be shown in a Viewer
- Sometimes users use links to websites within an image gallery. These usually are identified mime type "text/html" or ...
- 10:51 AM feature request #9067 (Closed): [DISCUSS] Allow media to support external links not being files
- Andreas Kohlbecker wrote:
> I actually see no benefit of the "solutions" 2 - 4 over 1.
>
> Adding additional fiel... - 10:43 AM feature request #9546 (New): [DISCUSS] Merge ExternalLink and MediaRepresentation
- ... once MediaRepresentation has been merged with MediaRepresentationPart
Both classes store common information li... - 10:24 AM feature request #9296: Preference to show/not show infrageneric epithet for species
- NK:
zufällig bin ich nun wieder auf den Hintergrund in der Botanik gestoßen:
Code, https://www.iapt-taxon.org/n... - 10:01 AM feature request #9545 (Closed): Remove "External Link type" completely
- There is no real need for the ExternalLink.type attribute as today browsers all know how to open e.g. pdf. This was a...
- 09:52 AM bug #9538 (Closed): Changing accepted to synonym closes name editor tab even if canceled
- I also can't reproduce anymore. So I close and reopen if it appears again.
- 08:36 AM bug #9538 (Resolved): Changing accepted to synonym closes name editor tab even if canceled
- I can't reproduce this exception, also on nightly version. Maybe there was a state where the exception appeared.
- 09:20 AM bug #9542 (Closed): Bulk Editor search does not work after opening a name out of the bulk editor
- Works as expected and code looks reasonable.
03/23/2021
- 01:43 PM feature request #9544: In bulkeditor the strings should be copyable
- I guess this is fast to implement. If not, remove the tag.
- 11:54 AM feature request #9544 (Closed): In bulkeditor the strings should be copyable
- The user should be able to copy out of all columns in bulkeditor.
03/22/2021
- 02:38 PM bug #9543 (New): Revise, harmonize media list in SpecimenOrObservationBaseDTO vs. DerivedUnitFacade.getMediaTextData()
- `DerivedUnitFacade.getMediaTextData()` is being used to provide the media lists for the `DerivedUnit` and `FieldUnit`...
- 11:31 AM bug #9504: Changing term tree title is not persisted
- Not sure if this is fast but I could imagine that it is.
- 10:46 AM bug #9542: Bulk Editor search does not work after opening a name out of the bulk editor
- I guess this is for reveiew
- 10:40 AM bug #9542 (Resolved): Bulk Editor search does not work after opening a name out of the bulk editor
- Applied in changeset commit:taxeditor|e2d8b4196539aeb0c3e1a587026ca46ce1f1034a.
- 08:19 AM bug #9542 (Closed): Bulk Editor search does not work after opening a name out of the bulk editor
- mail WHB:
Noch eine Auffälligkeit. Neoporteria planiceps ist (als Name) vorhanden.
Im Bulk Editor wird er abe... - 10:40 AM feature request #8968 (Resolved): filter Bulk editor for created by
- Applied in changeset commit:taxeditor|3767457b3f1509b425d264ef930d384d9126a0d8.
03/19/2021
- 09:02 PM feature request #9541 (Closed): Improve referencing objects handling
- * DescriptionElementSource, SecundumSource and NomenclaturalStatus do now have a backlink to their referencing main o...
- 06:15 PM feature request #9331: Distinguish DescriptionElementSource and NamedSource
- This is generally solved and update script works now. The new class structure is now
~~~
OriginalSorceBase
|- Na... - 06:10 PM feature request #8761 (Closed): Remove TaxonName_NomenclaturalStatus MN table
- This works. The MN table is not touched anymore when data is edited.
- 04:13 PM feature request #9211 (Closed): Handle source(s) for Classification
- Update script worked correctly. I close this ticket. Followup ticket for TaxEditor exists. For dataportal probably no...
- 04:07 PM feature request #9540 (New): Handle classification source as source in TaxEditor
- WIth #9211 the reference for classification became a single source. The classification wizard should be adapted accor...
- 04:02 PM task #9315 (Closed): Remove old single source citation and microCitation columns
- All columns were correctly removed on test
- 03:55 PM feature request #9327 (Closed): Make taxon secundum reference an original source
- Closing this ticket as update script worked successfully on test server. Followup tickets for dataportal and taxedito...
- 03:46 PM feature request #9332 (Closed): Rename TypeDesignationBase.source to .designationSource
- 03:39 PM feature request #9507: Add ratioTo structure to Character
- AM:
ratioTo ist modellseitig jetzt implementiert und muss nur noch im TaxEditor zur Verfügung gestellt werden.
... - 03:32 PM feature request #9507 (Closed): Add ratioTo structure to Character
- 03:25 PM task #9330 (Closed): Remove "NomenclaturalSource" from OriginalSourceType
- 03:20 PM feature request #8876 (Rejected): nom. & gen. cons.
- AM:
Allerdings frage ich mich gerade, ob der neue Status wirklich „nom. & gen. cons.“ oder nur „gen. cons.“ heißen... - 02:21 PM bug #9538 (Feedback): Changing accepted to synonym closes name editor tab even if canceled
- I do now get:
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/classification... - 12:23 PM bug #9538: Changing accepted to synonym closes name editor tab even if canceled
- Moved the close right before the creation of the operation, so also cancel of sec handling wizard does not close the ...
- 12:21 PM bug #9538 (Resolved): Changing accepted to synonym closes name editor tab even if canceled
- Applied in changeset commit:taxeditor|1103c727e0bcd2b58e88cfb536340490655d1429.
- 11:27 AM bug #9538 (Closed): Changing accepted to synonym closes name editor tab even if canceled
- When calling accepted to synonym on a taxon opened in name editor the tab is closed before the dialogue to select the...
- 01:07 PM feature request #8968 (Feedback): filter Bulk editor for created by
- Works as expected. I suggest to move the column before ID and UUID. But I am not sure. Generally the ticket can be cl...
- 01:02 PM feature request #9515: Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- I have renamed the method to set the description to the import state to get/setIndividualsAssociationDescriptionPerTa...
- 12:56 PM feature request #9515 (Feedback): Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- Have you tested with a real import that it works?
- 12:42 PM feature request #9518 (Closed): Add symbol to descriptions having status individual association in facts view
- Works as expected
- 12:23 PM feature request #9079: Move supported and available for parts of feature detail element to sections
- A similar availableFor section we will also have for Types like ExtensionType, AnnotationType, MarkerType and Identif...
- 12:22 PM feature request #9539 (In Progress): Implement availableFor for ExtensionType, MarkerType, AnnotationType and IdentifierType
- Similar to Features #9027
We may need to decide for all existing Types what they should support by default. Also w... - 12:09 PM bug #6182 (Rejected): Emptying protolog URI does not work
- As protologues are now handled as nomenclatural source external links this problem does not exist anymore. For extern...
- 12:05 PM bug #6686: Correct handling for chromatograms in dataportal
- This is somehow related to specimen handling and to media handling
- 12:02 PM feature request #8920: Make reference URL available in details view
- So I guess the button should be at one of the following positions:
![](picture771-1.png)
Whenever there is a DO... - 11:44 AM bug #8837 (Worksforme): Name editor is not updated after change accepted to synonym
- For me this seems to be fixed. The name editor of the old accepted taxon is closed and the new synonym appears in the...
- 11:17 AM bug #8831 (Worksforme): saving name editor throws NPE
- This appeared before parsing and deduplication was handled serverside (#9078). Since then it was not observed anymore...
- 09:18 AM bug #8955: After saving a taxon the taxon navigator scrolls the taxon to the bottom
- AM:
ist eigentlich schon implementiert, dass der Navigator bei NameEditor-Save nur aktualisieren muss, wenn der Kn... - 07:55 AM bug #8421 (Rejected): icons in compose_specimen_table_top_down() are not visible
- with the new implementation of the derivation tree view this has become obsolete, see #7599 & #6866
- 07:26 AM feature request #8463: Make DeterminationEvent.references sources
- Currently this is not yet available in TaxEditor at all and it is questionable if we need multiple sources at all. I ...
03/18/2021
- 11:51 PM feature request #9211 (Resolved): Handle source(s) for Classification
- 09:56 PM feature request #8761 (Resolved): Remove TaxonName_NomenclaturalStatus MN table
- 06:46 PM feature request #9114: Handle malformed URIs in user type
- This ticket seems to be done or needs to be splitted into an open issues ticket. It can be moved back to 5.19(?) afte...
- 06:41 PM bug #8233: [Follow up] Creating type duplicates
- I add the "fast" tag for the last issue ("Add "Preferred Stable Identifier" to the list of available identifiers"). I...
- 06:37 PM bug #8421: icons in compose_specimen_table_top_down() are not visible
- I think this should be assigned to AK
- 06:36 PM bug #8659: Taxon navigator: not refreshed after ABCD file import
- Is this still an open issue? I think refresh now runs after all imports.
If fixed please close as duplicate or wor... - 06:24 PM feature request #8922: Make setting of sec-Reference configurable when moving synonyms.
- I flag this as fast as it is problably fixed already.
- 06:22 PM feature request #8930: Publishable objects should show icon if they are unpublished
- Katja Luther wrote:
> mail WB:
>
> In diesem Zusammenhang wollte ich auch anregen, die als doubtful markierten Ta... - 05:54 PM bug #8971: Long running tasks in taxon navigator should disable the navigator
- Andreas Müller wrote:
> WGB:
>
> hier nur nochmal die Bestätigung, dass das ein an verschiedenen Stellen auftrete... - 05:40 PM feature request #9089: Show descriptive datasets in description details view
- The read only version maybe is fast to implement?
- 05:37 PM feature request #9139: When deleting a taxon with images the configuration should also handle the image
- is this fast?
- 05:32 PM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
- I guess this is fast?
- 05:31 PM feature request #9321: Make availability of pro-parte synonyms configurable
- I guess this is fast to implement?
- 05:30 PM feature request #9328 (In Progress): Adapt Editor to switch to originalSource for taxon secundum
- This needs to be implemented as soon as the model changes are committed.
- 05:29 PM feature request #9333: Preference for display of protologue section in nomenclatural source section
- I think the second part of the description "Additionally we should ..." is already implemented. Is that true? If yes,...
- 05:28 PM feature request #9333: Preference for display of protologue section in nomenclatural source section
- Hi Katja, what do you think should we reuse the preference? Is it difficult to hide the external link part in the nom...
- 05:21 PM feature request #9370: Search in media bulk editor should include search on URI
- Maybe a like search is not possible here as it is a CLOB field. We had something similar for Rights search recently (...
- 05:00 PM bug #9532 (In Progress): Check whether all data are loaded for NameEditor
- 03:21 PM feature request #9332 (Resolved): Rename TypeDesignationBase.source to .designationSource
- This is solved in cdmlib but we need to check if it works in TaxEditor and vaadin
- 12:40 PM task #9330 (Resolved): Remove "NomenclaturalSource" from OriginalSourceType
- NomenclaturalSource does not make sense as source type anymore (same as potential new source type secundum source). T...
- 11:47 AM feature request #9331 (Resolved): Distinguish DescriptionElementSource and NamedSource
- 10:53 AM bug #8723 (Worksforme): Distribution detailsview: changing the area removes the state
- This seems to be fixed in the meanwhile. The status is only removed if the status selection does not match to the pos...
- 10:21 AM feature request #8968 (Resolved): filter Bulk editor for created by
- please review
- 10:20 AM feature request #8968 (New): filter Bulk editor for created by
- Added a new column 'created by' which is sortable.
- 10:20 AM feature request #8968 (Resolved): filter Bulk editor for created by
- Applied in changeset commit:taxeditor|57fd518bd253736b63310ea0fde64d96df21569d.
- 10:14 AM feature request #9518: Add symbol to descriptions having status individual association in facts view
- I guess this is for review
- 10:12 AM feature request #9518 (Resolved): Add symbol to descriptions having status individual association in facts view
- Applied in changeset commit:taxeditor|76156fc08bc63b480d62d46c945be2897bd65f98.
- 10:04 AM feature request #9515: Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- please review
- 10:02 AM feature request #9515 (Resolved): Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- Applied in changeset commit:cdmlib|25935ad5dc1e7e1ef297198e5ca0148e36f25230.
- 10:00 AM feature request #9515: Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
- Now a description with type IndivialsAssociation is created or if already existing used to add the individual associa...
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