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From 10/19/2020 to 11/17/2020

11/17/2020

06:00 PM bug #9230 (Resolved): Type in preparation of a published name displayed in PhycoBank Portal Name Page
please review Andreas Kohlbecker
01:17 PM bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page
it is the portal/name/{uuid}/typeDesignations which misses to filter the entities Andreas Kohlbecker
03:51 PM task #9308 (New): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
Andreas Kohlbecker
03:51 PM task #9308 (Closed): Supress "designated by" reference in portal in registration ListView and RegistrationWorkingSetEditor
this task has been copied from #9302
see also #9306
Also fix the dangling plural `s` of "isotypes" which is not...
Andreas Kohlbecker
09:07 AM task #9189: Move datasource view to taxeditor.local
Is this for review? Andreas Müller
09:01 AM feature request #9307: Preferences for display of termtrees and entries
As this is related to #8774 I move it to the current milestone Andreas Müller
08:27 AM feature request #9307 (Closed): Preferences for display of termtrees and entries
Like for terms we need a preference and a preference page for how to display term trees/entries. Katja Luther

11/16/2020

02:44 PM task #9306: Registration result list: supress "designated by" reference in portal
example url http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/registration-search/filter?ident... Andreas Kohlbecker
02:43 PM task #9306 (Closed): Registration result list: supress "designated by" reference in portal
Andreas Kohlbecker
02:42 PM task #9306 (Resolved): Registration result list: supress "designated by" reference in portal
Applied in changeset commit:cdm-dataportal|947ee97b814df065ae6381649c29ba3a5c5bd272. Andreas Kohlbecker
02:01 PM task #9306 (Closed): Registration result list: supress "designated by" reference in portal
this task has been copied from #9302
The portal used the `summaryTaggedText` to render the entries in `compose_reg...
Andreas Kohlbecker
09:58 AM feature request #9305: Include additional TypeDesignationStatus sort order (term tree) in CDM terms
This requires that term tree can be loaded also during term loading. This in future should come from the term server ... Andreas Müller
09:54 AM feature request #9305 (New): Include additional TypeDesignationStatus sort order (term tree) in CDM terms
For type designation status we need different orders. In dropdown menus like in TaxEditor the current order which has... Andreas Müller
09:25 AM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
As this is related to the implementation of #6581 I move it to the current milestone. Andreas Müller
09:20 AM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
AM (Original Mail): ja das war mir auch schon aufgefallen. Habe keine richtige Lösung dafür. Klar ist, wenn unter „mo... Andreas Müller
09:24 AM feature request #6581 (Resolved): Make all microreferenced references OriginalSources
This is more or less solved. Open issues hshould be moved to new tickets if not yet done. Andreas Müller
09:16 AM feature request #9304 (New): While creating new reference choosing the type first
To avoid generic references the user should have to choose the reference type first when entering a new reference.
Katja Luther
09:16 AM bug #9281: Set basionym not available for heterotypic synonyms after drag & drop
This is core functionality so we should implement it soon. Andreas Müller
09:11 AM feature request #9297: Improve name of zip file for cdmLightExport
WGB: da fände ich die erste Option (Taxon/Klassifikation zuerst) auch schöner. Andreas Müller
09:10 AM bug #9286: Re-connect and change user should be disabled if no datasource is connected yet
please review Katja Luther

11/14/2020

08:34 PM feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
Please be aware that we do have a predicate for these attributes already. Better would be to implement the specific n... Andreas Müller
08:29 PM bug #8984: Registration search result list: Format display of two type specimens
At least the kommata handling might be fixed by implementations from #9279, but not sure Andreas Müller
08:15 PM task #9300: Name Page: harmonize media specimen lectotype representations
Andreas Kohlbecker wrote:
> Since the Citation part will end with a dot character, is seems incorrect to write "desig...
Andreas Müller
08:05 PM bug #9302: Phycobank related issues for TypeDesignation formatting
AM:
ich habe, wie besprochen versucht den Punkt
"The search result in phycobank currently includes citation inf...
Andreas Müller
07:14 PM bug #9302: Phycobank related issues for TypeDesignation formatting
AM: Bei der Diskussion ums Typusmodul vor ca. 2 Jahren hatten wir diskutiert und später auch implementiert, dass es 2... Andreas Müller
07:12 PM bug #9302: Phycobank related issues for TypeDesignation formatting
AM:
Bisher war gewünscht, Quellen als Kurzzitat mit „Autor (Jahr)“ anzugeben, was sowohl für die designated by Que...
Andreas Müller
07:10 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting
Andreas Müller
05:05 PM bug #9302 (In Progress): Phycobank related issues for TypeDesignation formatting
In the Phycobank context a couple of issues for type formatting have been found, after TypeDesginationSetManager has ... Andreas Müller
07:17 PM bug #9303 (New): [DISCUSS+IMPLEMENT] Make type designation micro references for non-lectotypes editable in TaxEditor
AM:
Bei der Diskussion ums Typusmodul wurde damals beschlossen, dass wir lediglich bei Lecto-, Epi- und Neotypen u...
Andreas Müller
12:36 AM feature request #9299: Add LSID to author and reference details
As far as I understand WGB this is a functionality that is needed soon. As to me it sounds like easy to implement I s... Andreas Müller
12:34 AM bug #6947: Incorrect error for LSID field
I guess this is for review ... Andreas Müller

11/13/2020

06:10 PM feature request #9301 (Closed): SpecimenTypeDesignationEditor: Add fields for citation and citationDetail
for all TypeDesignations where `typeStatus.hasDesignationSource() == true` field for citation and citationDetail need... Andreas Kohlbecker
05:41 PM feature request #8308 (Feedback): Extend specimen type designation editor
I can't see that there is anything missing:
type status:
![](picture825-1.png)
image references representi...
Andreas Kohlbecker
04:36 PM task #9291: Clear all unnecesary TypeDesignation.citation entities and citationDetails
the Excel file belongs to the other ticket - cleaning up here .... Andreas Kohlbecker
04:35 PM bug #9290: stop setting Registration.citation as citation for TypeDesignations in all type editors by default
Update to the Excel file.
Now the reference type is also shown.
"Irregular" Reference Types are highlighted.
Andreas Kohlbecker
03:13 PM task #9300 (Feedback): Name Page: harmonize media specimen lectotype representations
Since the Citation part will end with a dot character, is seems incorrect to write "designated by", it better should ... Andreas Kohlbecker
03:10 PM task #9300 (In Progress): Name Page: harmonize media specimen lectotype representations
The name *Heterocapsa triquetra* f. *apiculata* Er.Lindem. has a media specimen as lectotype.
* The "designated ...
Andreas Kohlbecker
01:39 PM bug #6947 (Resolved): Incorrect error for LSID field
Applied in changeset commit:taxeditor|0faab9c0c0eae654583982c6f067e89851f758ee. Katja Luther
11:09 AM feature request #9299 (Closed): Add LSID to author and reference details
Katja Luther
11:04 AM feature request #9298 (New): Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view
IDInSource and IDNamespace are not needed for nomenclatural source therefore the display should be handled by a prefe... Katja Luther
10:42 AM feature request #9297 (Closed): Improve name of zip file for cdmLightExport
The zip file created by the cdmLight export should contain more informations about the data.
For example:
{TaxonN...
Katja Luther
10:11 AM feature request #9296 (New): Preference to show/not show infrageneric epithet for species
ERS:
Eingabe eines name in source: im Formular „New Scientific Name“ gibt es einen bug: das scroll-down-Menü für „Ra...
Katja Luther
10:09 AM feature request #9295 (New): Preference to set default reference type for new references
ERS:
Bei der Eingabe einer neuen Referenz steht der „Reference Type“ standardmäßig auf „Generic“. Der häufigste Fall...
Katja Luther
10:07 AM feature request #9294 (New): New person dialog with protected titleCache
ERS:
Wenn ich im Laufe der Eingabe einer neuen Referenz einen neuen Autor eingeben muss, öffnet sich im Dialogfeld „...
Katja Luther
09:06 AM feature request #9262 (In Progress): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
Katja Luther
08:58 AM feature request #7700 (Closed): use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
I think we can close this ticket as there is kind of a follow up ticket with #9279 Andreas Müller

11/12/2020

04:02 PM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
no more problems Andreas Kohlbecker
03:23 PM bug #9289: LazyInitializationException (LIE) in NameTypeDesignationEditor
fixed by commit:cdm-vaadin|84760d27
Andreas Kohlbecker
03:54 PM bug #9238 (Closed): pure entities in DerivateDTO.derivates may cause LIEs
Andreas Kohlbecker
03:52 PM task #9252 (Closed): Harmonize SpecimenOrOberservationBase related DTOs
this ticket is either completed or open tasks are copied to new tickets, so it can be closed Andreas Kohlbecker
03:50 PM task #9293 (New): Use use DTO for Set<IdentifiableSource> sources in SpecimenOrObservationBaseDTO
copied from #9252 Andreas Kohlbecker

11/11/2020

12:28 PM feature request #9292 (New): find by name parts search implemented
Implement a search similar to the `TaxonListController.doFindByNamePart()` function which allows for filtering names ... Andreas Kohlbecker
11:34 AM bug #8592: consider renaming menu entry General->Switch User
Currently it is not wanted that users connect to another db as this does not work correctly due to static term proble... Andreas Müller
08:59 AM discussion #7917: Revise ReferenceSystemTerms
Do you really think that a measurement method is the same as the mathematical model that is needed to make sense of t... Andreas Kohlbecker
08:24 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Katja Luther wrote:
> > ...
> > This is caused by dirty data, I cleaned up the database, n...
Katja Luther

11/10/2020

05:53 PM discussion #7917: Revise ReferenceSystemTerms
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Andreas Müller wrote:
> > > So you are planning to use the r...
Andreas Kohlbecker
05:51 PM discussion #7917: Revise ReferenceSystemTerms
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > So you are planning to use the reference system for computati...
Andreas Müller
11:07 AM discussion #7917: Revise ReferenceSystemTerms
Andreas Müller wrote:
> So you are planning to use the reference system for computations in the near future?
Plac...
Andreas Kohlbecker
09:44 AM discussion #7917: Revise ReferenceSystemTerms
So you are planning to use the reference system for computations in the near future? Andreas Müller
08:52 AM discussion #7917: Revise ReferenceSystemTerms
BTW: the CRS for GPS is WGS 84
For solving the the current misconception in the model we need to distinguish the *...
Andreas Kohlbecker
05:04 PM task #9291 (Closed): Clear all unnecesary TypeDesignation.citation entities and citationDetails
**This ticket should be solved after #9290 is being released and deployed to phycobank**
This is the query to whic...
Andreas Kohlbecker
04:59 PM bug #9290 (Closed): stop setting Registration.citation as citation for TypeDesignations in all type editors by default
As shown in the analysis ( attachment:"TaxonName and Typedesignation citations unequal_diff.xlsx" ) using the `Regist... Andreas Kohlbecker
12:19 PM bug #9286 (Resolved): Re-connect and change user should be disabled if no datasource is connected yet
Applied in changeset commit:taxeditor|cea74dc3dd7328308f0fda121d2ccc5b7246c9a8. Katja Luther
11:34 AM bug #9289 (Closed): LazyInitializationException (LIE) in NameTypeDesignationEditor
Buryatia belyaevae Kulikovskiy, Metzeltin & Lange-Bert. name type for Buryatia belyaevae Kulikovskiy, Metzeltin & Lan... Andreas Kohlbecker
09:43 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Katja Luther wrote:
> ...
> This is caused by dirty data, I cleaned up the database, now the feature trees and the ...
Andreas Müller
09:21 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> adding a child (which was a duplicate but the tree did not allow duplicates, don't know if t...
Katja Luther
09:12 AM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
Katja Luther

11/09/2020

03:39 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Unordered trees should preferably be ordered alphabetically by label or idInVoc or whatever the first part of the use... Andreas Müller
03:29 PM bug #8774: Reimplement term tree editors to implement the general save strategy
When adding/removing terms the tree should stay expanded. Currently it collapses and you have to reopen it. Best woul... Andreas Müller
03:27 PM bug #8774: Reimplement term tree editors to implement the general save strategy
~~The duplicate check should be done when adding the term not only when saving it.~~
this is fixed.
Andreas Müller
03:22 PM bug #8774: Reimplement term tree editors to implement the general save strategy
adding a child (which was a duplicate but the tree did not allow duplicates, don't know if this is relevant):
~~~
...
Andreas Müller
03:13 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t...
Andreas Müller
03:12 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Changing the name of a vocabulary is not possible. The changes neither show up in the term t...
Andreas Müller
03:11 PM bug #8774: Reimplement term tree editors to implement the general save strategy
~~Changing the name of a vocabulary is not possible. The changes neither show up in the term tree editor nor do they ... Andreas Müller
02:52 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Trying to open the feature tree editor opened it in the buttom panel and no tree appeared an...
Katja Luther
02:49 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Can we show the details of a term anyway even if it is not editable in the term tree editor....
Katja Luther
02:44 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Can we show the details of a term anyway even if it is not editable in the term tree editor. This is because the pure... Andreas Müller
02:34 PM bug #8774: Reimplement term tree editors to implement the general save strategy
Can we still Change the menu that way that we have Vocabularies instead of "Feature", "Named Area", "Others" and then... Andreas Müller
02:31 PM bug #8774: Reimplement term tree editors to implement the general save strategy
It is now possible to open 2 term tree Editors of the same type. This is not wanted as a term tree editor always edit... Andreas Müller
02:28 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
Trying to open the feature tree editor opened it in the buttom panel and no tree appeared and no conext menu existed ... Andreas Müller
02:25 PM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
Andreas Müller wrote:
> Drag&drop still seems to work like in the old version with no dirty flag but immediate save ...
Andreas Müller
02:07 PM bug #8774 (Feedback): Reimplement term tree editors to implement the general save strategy
~~Drag&drop still seems to work like in the old version with no dirty flag but immediate save of change.~~ Andreas Müller
03:16 PM feature request #9288 (Closed): Add symbols for flags in use for term trees in term tree editor
The flags are "allow duplicates", "order relevant" and "is flat".
As long as we do not have better symbols we coul...
Andreas Müller
02:49 PM feature request #9287 (Closed): Show term details in details view of term tree editor
From ticket #8774:
Can we show the details of a term anyway even if it is not editable in the term tree editor. Th...
Katja Luther
02:12 PM bug #9286 (Closed): Re-connect and change user should be disabled if no datasource is connected yet
Currently choosing the re-connect leads to a NPE Andreas Müller
02:06 PM discussion #7917: Revise ReferenceSystemTerms
I remember the outcome differently.
> conglomerate of different types of possibilities to define what has been use...
Andreas Kohlbecker
01:33 PM discussion #7917: Revise ReferenceSystemTerms
We had discussed this issue some years ago and as far as I remember the result was, that the term ReferenceSystem mig... Andreas Müller
01:44 PM feature request #8402: ordering typedesignations in name and taxon page
follow up tasks are copied to #9283, #9284, #9285 Andreas Kohlbecker
01:43 PM task #9285 (New): apply the order of the chosen TermTrees to the typedesignations in name and taxon page
This should preferably implemented by adding a query parameter to the webservice delivering the typedesignations.
...
Andreas Kohlbecker
01:40 PM feature request #9284 (New): Admin UI to define the TermTrees as sort order preset
this is required at least for the order of typedesignations in name and taxon page, see #8402 Andreas Kohlbecker
01:37 PM task #9283 (New): Webservice for TermTrees implemented
this webservice may be similar to the vocabulary web service.
It is important that the order of terms is retained
Andreas Kohlbecker
01:23 PM bug #9215 (Closed): Drop down for empty rank does not work
This seems to be fully fixed. Andreas Müller
01:15 PM task #9266 (Feedback): Remove protologue section from TaxEditor
The protologue section should also be removed from local and DB preferences I guess as it probably has no effect to u... Andreas Müller

11/06/2020

05:13 PM feature request #8402: ordering typedesignations in name and taxon page
The sort order should follow the order of the type designation status terms either of that in the vocabulary or in a ... Andreas Kohlbecker
05:12 PM task #9266 (Resolved): Remove protologue section from TaxEditor
The protologue section is removed/commented, please review afterwards I will remove the code completely. Katja Luther
03:59 PM feature request #9282 (Closed): Add nomenclatural standing
According to #9272 there are 4 classes of nomenclatural standing. These should be stored together with the accordings... Andreas Müller
01:22 PM feature request #9272: Add missing nomenclatural status
The situation has changed. Later isonym already exists as name relationship, not as status. At the same time there ar... Andreas Müller
01:06 PM feature request #9279: Improve type designation formatting and TypeDesignationSetManager
An example for unparsed specimen from Cactaceae: Selenicereus anthonyanus (Alexander) D.R.Hunt
Resulting in:
 –...
Andreas Müller
12:16 PM feature request #9279 (In Progress): Improve type designation formatting and TypeDesignationSetManager
Andreas Müller
12:05 PM bug #9281 (Closed): Set basionym not available for heterotypic synonyms after drag & drop
mail ERS:
beim Zusammenstellen von Synonymen in einer homotypischen Gruppe im Freitext-Editor ist es anschließend ...
Katja Luther
10:46 AM bug #8774 (Resolved): Reimplement term tree editors to implement the general save strategy
all termtree editors are now switched to dtos. please review. Katja Luther

11/05/2020

05:18 PM task #9280 (Closed): Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel()
The property name IKeyTerm.message is misleading and confusing it should be renamed to label
----
From email co...
Andreas Kohlbecker
04:04 PM report #8177 (Worksforme): Discuss: How to add originals of a type specimen
We concluded that adding of intermediate originals to a specimen is a special case for phycobank. This usecase in not... Andreas Kohlbecker
02:08 PM feature request #9279 (Closed): Improve type designation formatting and TypeDesignationSetManager
these are open issues from #7700 and general issues
Some issues are
* parameterize formatting (with citation, w...
Andreas Müller
09:58 AM feature request #9277: User rights for name, name type, and specimen type notes
Submitters and curator(s) should have the same rights to create notes.
except for the status of the registrations:...
Wolf-Henning Kusber
09:23 AM feature request #9277 (New): User rights for name, name type, and specimen type notes
Submitters and curator(s) should have the same rights to create notes.
Name editor:
Technical (currently enabled ...
Wolf-Henning Kusber
09:47 AM feature request #9278 (New): Notes for references
Currently the curator has the option to fill
Editorial notes (for publication; not implemented yet)
Technical notes...
Wolf-Henning Kusber

11/04/2020

12:34 PM task #9252: Harmonize SpecimenOrOberservationBase related DTOs
tasks regarding DerivateDataDTO copied to other ticket Andreas Kohlbecker
12:31 PM task #9276 (New): improve DerivateDataDTO
copied from #9252
DerivateDataDTO needs harmonization:
* find better class name
* Use `List<MediaDTO>` instead...
Andreas Kohlbecker
12:08 PM task #9268: Check cdm for GC G1 humongous objects problem
Andreas Kohlbecker wrote:
> this finding can be especially relevant for imports and exports, therefore we should exa...
Katja Luther
12:00 PM task #9268 (Feedback): Check cdm for GC G1 humongous objects problem
this finding can be especially relevant for imports and exports, therefore we should examine I/O functionalities whic... Andreas Kohlbecker
11:29 AM task #9268: Check cdm for GC G1 humongous objects problem
further results from the test server after startup and running the Data Portal Cacher for E+M by 8,5% (attachment:g1-... Andreas Kohlbecker
10:47 AM task #9275 (New): Cleanup apache configuration from "AllowEncodedSlashes On"
see #7563 for servers which need to be cleaned Andreas Kohlbecker
10:42 AM bug #9240 (Closed): nomenclatural status missing in name and registration page
Andreas Kohlbecker

11/03/2020

06:30 PM task #9268 (In Progress): Check cdm for GC G1 humongous objects problem
Andreas Kohlbecker
06:30 PM task #9268: Check cdm for GC G1 humongous objects problem
I enabled G1 GC logging as described in https://plumbr.io/handbook/gc-tuning-in-practice/other-examples/humongous-all... Andreas Kohlbecker
05:45 PM feature request #9134: Rule based creation of additional media representations "on the fly"
I improved the regex in the DefaultMediaTransformations for digilib, this is the new default:
~~~json
[ {
"sch...
Andreas Kohlbecker
04:25 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
Thumbnails have been removed from cyprus DB (also from AUD tables).
So the only open issue is now to update links ...
Andreas Müller
01:59 PM task #9132: Update cyprus images to Scaler default API and add thumbnails
Removing thumbnails:
~~~sql
SELECT *
FROM MediaRepresentation mr
INNER JOIN MediaRepresentationPart mrp ON mrp....
Andreas Müller
02:02 PM feature request #9274 (New): Analyze where recalculating of taxon navigator is really necessary
mail AM:
Wenn der Navigator verlinkt ist, wird sehr viel Zeit damit verbracht, den Navigator nach vielen Aktionen ...
Katja Luther
12:24 PM feature request #9273 (New): [DISCUSS] Unify Nomenclatural status and name relationships
Often these 2 represent the same. The unified class would be a relation which is either unary or binary.
Andreas Müller
11:48 AM bug #8751 (Rejected): Replace saveOrUpdate() in AbstractTermTreeEditor
Katja Luther
11:46 AM bug #8751 (Resolved): Replace saveOrUpdate() in AbstractTermTreeEditor
This is fixed by using dtos for the termtree editors. See #8774.
Maybe we should set the status to rejected becaus...
Katja Luther
11:07 AM feature request #9272: Add missing nomenclatural status
We still need (Latin) abbreviations for these two status types. Andreas Müller
11:05 AM feature request #9272 (Closed): Add missing nomenclatural status
From the EDIT manual for nomenclatural status and name relationships.
Designations
* invalid names
* invali...
Andreas Müller

11/02/2020

09:37 PM feature request #9271 (In Progress): Improve E+M dataportal performance
To fully release the E+M data portal which should try to improve the peformance to the performance difference between... Andreas Müller
08:46 PM feature request #3665 (In Progress): Further implementation of original spelling name caching
This has been mostly implemented in 4.7 and 4.8. Need to check if something is still open. Andreas Müller
08:36 PM bug #7781: original spelling is missing for accepted taxon in taxon page
As this is requested multiple times we should try to implement it in one of the next releases. Andreas Müller
08:35 PM feature request #9270: show original spelling on taxon page
This is probably a duplicate for #7781 Andreas Müller
08:28 PM feature request #9270 (Duplicate): show original spelling on taxon page
ERS:
Der Name Vulpia fontqueriana has original spelling Vulpia fontquerana.
Daher wird mir im Editor im Freitextb...
Andreas Müller
02:31 PM feature request #9134: Rule based creation of additional media representations "on the fly"
posting the SQL INSERT statement to add the default transformation to a DB:
~~~sql
INSERT INTO CdmPreference
(key_su...
Andreas Kohlbecker
01:57 PM feature request #9134: Rule based creation of additional media representations "on the fly"
Ok agreed, I am closing this ticket. Please open a new one for further discussion when needed. Andreas Kohlbecker
02:00 PM task #9269: discuss with the flora of greece people if the new image viewer is to be activated
I am assigning this ticket to you Andreas since you are the main contact for the FOG in the BDI group. Andreas Kohlbecker
01:59 PM task #9269 (New): discuss with the flora of greece people if the new image viewer is to be activated
please pass the ticket to me once we know the answer Andreas Kohlbecker
01:36 PM task #9268: Check cdm for GC G1 humongous objects problem
I can't see that we have objects of size in CDM real data Andreas Müller
01:16 PM task #9268 (New): Check cdm for GC G1 humongous objects problem
problems of the G1 when there are Objects >= 1MB in the heap:
https://dzone.com/articles/whats-wrong-with-big-ob...
Andreas Kohlbecker
01:13 PM task #8865: more external-links to be implemented
Email von Stefan Dressler und marco schmidt Frankfurt and Eckhard
Euro+Med/IDs:
für die Verlinkung zu uns wäre ...
Andreas Kohlbecker
09:17 AM bug #9267: No sec reference for move change Synonym to accepted Taxon
please review Katja Luther
09:15 AM bug #9267 (Resolved): No sec reference for move change Synonym to accepted Taxon
Applied in changeset commit:cdmlib|593c7701c265521b6e3701942e0f6c7756304963. Katja Luther
09:01 AM bug #9267 (Closed): No sec reference for move change Synonym to accepted Taxon
mail WGB:
mir ist aufgefallen, dass beim Umwandeln eines Synonyms in einen akzeptierten Namen dem neuen Taxon eine...
Katja Luther
08:44 AM bug #9263 (Resolved): Unify case for type designation status
This has been fixed by using lower case for specimen type designations now.
This lead to test failures in TypeDesi...
Andreas Müller

10/30/2020

02:03 PM feature request #6589 (Resolved): Handle protologue as original source with URI link
This is fixed now with model version 5.18.4.
However, #9266 and #9265 also need to be fixed before release
Andreas Müller
02:01 PM task #9266 (Closed): Remove protologue section from TaxEditor
after protologues have been moved now to nomenclaturalSource.externalLink. Andreas Müller
09:23 AM feature request #9225 (Resolved): Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass
I think the vaadin test are now fixed (?). So can we close this ticket? Andreas Müller

10/29/2020

03:55 PM task #9265 (Closed): Adapt dataportal to new protologue handling
Protologues are now handled as external links of the nomenclatural source (#6589). The dataportals (and maybe webserv... Andreas Müller
03:54 PM feature request #6589: Handle protologue as original source with URI link
SQL to find linking data to DescriptionBase holding the protologue image
~~~sql
SELECT n.titleCache
FROM TaxonN...
Andreas Müller
03:54 PM feature request #6589: Handle protologue as original source with URI link
SQL to find linking data to TextData holding the protologue image
~~~sql
SELECT DO.sources_id -- DO.DescriptionEl...
Andreas Müller
03:53 PM feature request #6589: Handle protologue as original source with URI link
~~The following records (sources for textdata) should also be deleted from AUD tables in Cichorieae . All other DBs d... Andreas Müller

10/27/2020

11:14 AM bug #9263 (In Progress): Unify case for type designation status
NKo: ich würde sagen, wenn es als Satzanfang ausgegeben wird, dann groß, sonst klein. Auf gar keinen Fall abkürzen.
...
Andreas Müller

10/26/2020

11:23 AM bug #9264 (Closed): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
mail WB:
ich habe die Caryophyllales_spp gerade aufgemacht und nach Hammada articulata gesucht und das Resultat (H...
Katja Luther

10/24/2020

09:28 AM feature request #9246 (Duplicate): Additional fields in cdmLIght export
this ticket duplicates #9262 Andreas Müller

10/23/2020

06:00 PM bug #9263 (Closed): Unify case for type designation status
Current csv files use lower case for NameTypeDesignationStatus and upper case for SpecimenTypeDesignationStatus. This... Andreas Müller

10/22/2020

12:45 PM feature request #9262 (Closed): Several open issues for cdmlight export related to Cactaceae and other Caryophallales
Mail WGB 2020-10-22:
1. ~~Fehlerhafter Literatur-Output – zwei Autoren + et al. statt Erstautor + et al., siehe an...
Andreas Müller
12:15 PM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
Andreas Kohlbecker
12:15 PM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
Andreas Kohlbecker
12:15 PM bug #9261 (Resolved): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
Applied in changeset commit:cdmlib|8728f23bae0e8758c46f09837af01070922d1d41. Andreas Kohlbecker
11:35 AM bug #9261 (Closed): LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes()
http://api.cybertaxonomy.org/caryophyllales/portal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749/taxonNodes.json fails w... Andreas Kohlbecker

10/21/2020

10:02 AM bug #9260 (Closed): error in pages.inc calling compose_taxon_node_status()
http://caryophyllales.org/cdm_dataportal/taxon/b6ec8d50-7f37-4a17-af01-b1fae138c749
~~~
Recoverable fatal error: ...
Andreas Kohlbecker

10/20/2020

01:13 PM task #8081: Complete removal of redmine communication hub instances
all code has been removed now! see #7936 Andreas Kohlbecker
01:12 PM task #7315 (Rejected): remove workaround RedmineTransportAccessor
no longer needed, since the redmine message hub has been completely rejected Andreas Kohlbecker
01:10 PM bug #7936 (Closed): Consider complete removal of redmine communication hub code
Andreas Kohlbecker

10/19/2020

11:29 PM bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor
This ticket needs to be fixed urgently as it makes the specimen tree editor impossible to use Andreas Müller
05:04 PM bug #6757: AbcdImportWizard has all configurator flags set to false
Is this still an open issue? If yes we should fix it soon (probably a no-brainer), if not, we should close this ticke... Andreas Müller
02:05 PM task #9252 (Resolved): Harmonize SpecimenOrOberservationBase related DTOs
should be solved now, needs review Andreas Kohlbecker
09:56 AM task #9259 (Closed): reduce fields in TermBase json serializations
Andreas Kohlbecker
09:55 AM task #9259 (Resolved): reduce fields in TermBase json serializations
Applied in changeset commit:cdmlib|3ae4f12f20159b7e0ddb04c68f4bfc5fb17d5481. Andreas Kohlbecker
09:43 AM task #9259 (In Progress): reduce fields in TermBase json serializations
Andreas Kohlbecker
09:43 AM task #9259 (Closed): reduce fields in TermBase json serializations
The fields in json serializations produced by the TermBaseBeanProcessor can be reduced.
here an example of the cur...
Andreas Kohlbecker
 

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