Activity
From 09/13/2019 to 10/12/2019
10/12/2019
- 11:51 PM Revision e0935f63 (cdmlib-apps): adapt some classes to new CommonService.getSourcedObjectSByIdInSourceC and cleanup
- 11:49 PM Revision 3bc8dd61 (cdmlib): add additional method for more specific return type of CommonService.getSourcedObjectSByIdInSource
- 11:04 PM Revision 2d09ccf7 (cdmlib): add more specific return type to CommonService.getSourcedObjectByIdInSource
- 11:02 PM Revision 925afb79 (cdmlib-apps): cleanup
- 05:26 PM Revision a3842bd8 (cdmlib): cleanup
- 12:07 PM Revision 891031f6 (cdmlib): ref #8509, ref #8508 some fixes to E+M PESI export and validation
- 12:06 PM Revision d9f92b40 (cdmlib-apps): ref #8509, ref #8508 some fixes to E+M PESI export and validation
- 12:05 PM Revision 1f9eb0e0 (cdmlib-apps): ref #8509 fix trailing whitespace for reference titleCaches
- 12:01 PM Revision 506f2414 (cdmlib-apps): ref #8577 cleanup E+M PESI validation
- 11:59 AM Revision 8e00239d (cdmlib-apps): ref #8587 adapt IF exporter
- 11:57 AM feature request #8587 (New): [PESI][IF] Implement IF specific CDM export
- Open issue:
* For Sordariomycetidae and all children the kingdom can not be defined. See comment in #2717 for reason - 11:22 AM Revision ffd6058e (cdmlib-apps): ref #2826 cleanup IF import
10/11/2019
- 03:46 PM bug #8586: Feature checkbox lists in perferences can neither be modified nor be scrolled
- This is probably mentioned in some "remaining preferences issues" ticket. At least it is known. Can you please check?
- 12:15 PM bug #8586 (New): Feature checkbox lists in perferences can neither be modified nor be scrolled
- It is not possible to change the state or to scroll the list of checkbox items in the settings for Features, Language...
- 03:44 PM feature request #8585: Factual Data View: new DesctiptionElements shoud be selected immediately
- I am sure there is a duplicate ticket for this already. Can you please check.
- 11:39 AM feature request #8585 (Closed): Factual Data View: new DesctiptionElements shoud be selected immediately
- After creating a new factual data entry (DescriptionElement) in the Factual Data View the new entry should be activat...
- 03:39 PM feature request #8128: Add indicator for feature facts and/or vocabularies which description type they support
- WGB:
bin mir nicht sicher, ob Gebietsbezeichnungen (geogr., ökol.) features sind, aber sie können sich durchaus a... - 02:19 PM Revision 8543d48b (cdmlib-apps): cleanup
- 02:19 PM Revision b639d1f2 (cdmlib-apps): ref #8577 updates to the E+M PESI export validation
- 02:19 PM Revision a2a0c1de (cdmlib-apps): ref #2717 some fixes E+M Pesi export
- 02:19 PM Revision f53e8dce (cdmlib-apps): reef #2717 add notNull handling to description export
- 01:48 PM Revision 869b76f8 (cdmlib): ref #2717 improve SimpleFilterMapper to use allowed and not allowed values
- 01:46 PM Revision 580e88c9 (cdmlib): ref #2717 fix notNull handling in ObjectMapper
- 01:45 PM Revision c0a697ab (cdmlib): ref #2717 improve ExportIgnore and NotYetImplemented and NullMapper
- 01:44 PM Revision da9caa6c (cdmlib): fix annotation mapper includedTypes handling
- 01:44 PM Revision 62262304 (cdmlib): cleanup
- 11:52 AM bug #8581 (Closed): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
- I think we do not need a review, so I close this ticket.
- 11:39 AM bug #8581: Naming inconsitency: Taxon Navigator or Taxonomic Tree?
- Applied in changeset commit:taxeditor|10dd6a16ad49bd78857ddd4bb86aa25d5a5cdf30.
- 11:26 AM bug #8581 (Resolved): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
- This change of the name came with the migration to e4. The variable for the title string was name.view.0 (="Taxon Nav...
- 11:39 AM Revision 10dd6a16 (taxeditor): fix #8581: renaming taxon navigator
- 10:11 AM bug #8584: Appended phrase should be shown on top level for misapplied names
- Was there a ticket which decided to create a subsection? If yes, please relate it to this ticket.
- 10:11 AM bug #8584 (Closed): Appended phrase should be shown on top level for misapplied names
- Currently when editing misapplied name relationships in details view the details view has a subsection for taxon info...
- 09:42 AM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
- As far as I understand the problem, we need to implement the `furtherVotingDescisions(CdmAuthority CdmAuthority, Targ...
10/10/2019
- 08:23 PM feature request #8583: Change Longitude Latitude to Latitude Longitude in Vaadin Geo location
- ![](picture231-1.png)
- 08:22 PM feature request #8583 (New): Change Longitude Latitude to Latitude Longitude in Vaadin Geo location
- Type Specimen Editor:
Change Longitude/Latitude to Latitude/Longitude in Vaadin Geo location.
Reason: In publicat... - 05:49 PM bug #8582 (Closed): Taxon Navigator: Classification label not refreshed & new taxa not visible
- 1. The Classification label is not refreshed in the Taxon Navigator after changing it in the "Classification Wizzard...
- 05:42 PM bug #5670: Refresh of Taxon Navigator
- I think this ticket needs more details.
Refresh of what? General refresh of all nodes and the classifications? - 05:19 PM bug #8545: Name editor: Erroneous status in Status type cannot be made withdrawn
- Reason: a valid name (Botany) has no status information, wheras nom. val. is explicitly a zoological status with diff...
- 05:12 PM bug #8581: Naming inconsitency: Taxon Navigator or Taxonomic Tree?
- Can you check when (and why, in which context) it was changed. I can't remember that we decided to rename it.
To m... - 04:28 PM bug #8581 (Closed): Naming inconsitency: Taxon Navigator or Taxonomic Tree?
- The View is named like "Taxonomic Tree" but the menu entry is Window->Show View->"Taxon Navigator"
In the manual "... - 03:06 PM EDIT Platform Etablierung task #8580 (In Progress): Update documentation to latest revision of the Taxeditor
- 03:06 PM EDIT Platform Etablierung task #8580 (Closed): Update documentation to latest revision of the Taxeditor
Documents to check:
* Manual-EDIT-Platform-01-INSTALL.docx **DONE**
* Manual-EDIT-Platform-02-DEMO.docx
* Manu...- 02:58 PM bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
- Andreas Müller wrote:
> is this only an UI issue or is it also a cdmlib-security issue?
I think this is also a cd... - 12:01 PM Revision 972ff1cf (cdmlib): fix incorrect obligatory handling in DoiMapper and TimePeriodMapper
- 12:00 PM Revision faa0db48 (cdmlib): ref #2717 allow notNull for SingleAttribute mappers (needed for required fields in PESI)
- 11:58 AM Revision 15cfae05 (cdmlib): ref #2717 fix incorrect error handling in CollectionExportMapping, only throw exception for single record, not all records
- 11:56 AM Revision 66925277 (cdmlib): fix incorrect defaultValue handling in BooleanMapper factory method
- 11:55 AM Revision 23720f5f (cdmlib): cleanup
- 10:57 AM Revision e0a12099 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
- 10:56 AM Revision 3f87d726 (cdmlib-apps): fix compile errors in app-import
- 10:11 AM Revision af221f0d (cdmlib-apps): commented 2 lines to make edaphobase compile
- 09:47 AM Revision dd919d85 (cdmlib-apps): reef #2717 better handling of status undefined
- 09:47 AM Revision 9d857396 (cdmlib-apps): ref #2717 add Valencian, High Aragonese, Majorcan and Faroer to PESI Export
- 09:47 AM Revision 8d5e5e53 (cdmlib-apps): cleanup
- 09:47 AM Revision b9dcae47 (cdmlib-apps): cleanup
- 09:32 AM Revision bf7e9675 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
- 09:31 AM Revision ff5db610 (cdmlib-apps): ref #1445: merging fauna europaea and erms
10/09/2019
- 09:22 PM bug #8579: Search in PhycoBank Portal with error
- Search for scientific name Planothidium: 34x error
- 07:18 PM bug #8579 (Worksforme): Search in PhycoBank Portal with error
- Search for Publication "Wetzel". Search is working but errors are displayed.
![](picture035-1.png) - 09:05 PM Revision 855ea64a (cdmlib-apps): ref #1444, ref #8509 add defined vocabulary to ERMS areas
- 09:04 PM Revision 81bc4733 (cdmlib-apps): ref #2717 add EM common name area handling to PesiTransformer
- 09:01 PM Revision e2fb06b3 (cdmlib): cleanup
- 09:00 PM Revision 9801bfb4 (cdmlib): ref #2717 add EM common name area UUIDs to BerlinModelTransformer
- 05:04 PM EDIT Platform Etablierung task #8578 (Closed): Discuss and find appropriate terms for major editor parts (window, view, editor, panel, pane)
- In the Taxeditor documentation the term 'window' is being used as simple and common term to refer to the various top ...
- 02:49 PM Revision 4b6dc990 (taxeditor): Remove unused class variable
- 02:49 PM Revision e9958b2a (taxeditor): ref #8450 Expand matrix rows only to taxon level
- 01:08 PM Revision 0c308148 (cdmlib): cleanup
- 11:25 AM Revision 5afad693 (cdmlib-apps): # 2717 fix NPE in finding areas (still needs to be tested by ERMS import)
- 11:24 AM Revision 99414418 (cdmlib-apps): # 2717 better logging for E+M distribution status "undefined"
- 11:23 AM Revision 9fe94bfe (cdmlib-apps): # 2717 improve handling of name types which do not exist as taxa (in the area)
- 11:22 AM Revision ab4a17f5 (cdmlib-apps): # 2717 fix finding kingdom for valueless EM taxa
- 11:19 AM Revision b643bc02 (cdmlib-apps): ref #8577 some changes to E+M export validation
- 11:16 AM Revision 6f79628c (cdmlib-apps): # 2717 cleanup and better logging for PesiExport
- 11:05 AM Revision fb82651c (cdmlib): #8577 fix handling of long values in getUniqueInteger
- 11:05 AM Revision 5d0804d6 (cdmlib): cleanup
- 11:03 AM task #8577 (In Progress): [PESI][E+M] Validation for E+M export
- Implement validation for E+M export to PESI warehouse
Maybe duplicated by #2792 - 10:40 AM Revision 3f5bef06 (cdmlib): ref #1445: fix helper methods for pesi merging
10/08/2019
- 11:30 PM Revision 01bc5fe1 (cdmlib-apps): ref #8508 some refactoring for ERMS validation
- 11:29 PM Revision 55da90fc (cdmlib-apps): ref #1444 trim displayname for ERMS import
- 11:28 PM Revision 2e058f2b (cdmlib-apps): # 2717 add PesiEuroMedValidator
- 11:28 PM Revision 67426b79 (cdmlib-apps): ref #2717 adapt PesiExport to EuroMed requirements and adapt PesiExportActivatorEM
- 11:23 PM Revision 803707ee (cdmlib-apps): GreeceImageActivator latest import file
- 11:22 PM Revision 2f628c0c (cdmlib-apps): cleanup
- 10:54 PM Revision e5c18a95 (cdmlib): fix default schema validation for ImportConfiguratorBase
- 10:54 PM Revision e0f9407f (cdmlib): cleanup
- 10:54 PM Revision 73eeeb34 (cdmlib): ref #1444 add diffIndex method to CdmUtils
- 10:21 PM Revision d346bae9 (cdmlib-apps): ref #2717 script for adding E+M source to all E+M taxa
- 12:23 PM Revision 87820880 (cdmlib): smaller changes in CdmLightExport (syn sec and fullAuthor in references)
- 10:22 AM task #8576 (New): [PESI][DW] Dokumentation for PESI export
- This ticket documents how to run a complete PESI export. Later the content will be moved to a Wiki page.
* Ask fo...
10/07/2019
- 09:24 PM Revision 58cd368c (cdmlib-apps): ref #8509 use kingdomId to define rank for PESI export
- 09:23 PM Revision 22e0d6ae (cdmlib-apps): ref #8509 use EnumSet instead of BitSet for source definition
- 09:21 PM Revision 39d481af (cdmlib-apps): cleanup
- 08:48 PM Revision 787b3ec2 (cdmlib-apps): ref #8509 cleanup rank handling in PesiTranformer
- 08:46 PM Revision 0b1be0da (cdmlib-apps): ref #1444, ref #8508 move diffIndex method to CdmUtils
- 05:57 PM EDIT Platform Etablierung task #8555 (In Progress): Evaluate document format and management for the documentation
- 01:55 AM Revision 65866505 (taxeditor): fix compile error
- 12:51 AM Revision b8fc4ee4 (cdmlib): ref #1444, ref #8509 adapt IncludedInMapper and TaxonRelationshipType uuid access to ERMS needs
- 12:49 AM Revision 57fc748f (cdmlib-apps): ref #8508 adapt ERMS pipeline validator to taxon relationships
- 12:49 AM Revision 54a3d685 (cdmlib-apps): cleanup
- 12:48 AM Revision 41cf69c5 (cdmlib-apps): ref #1444, ref #5809 fix taxon relationships in ERMS import and export
- 12:43 AM Revision aa44c220 (cdmlib-apps): ref #1444 improve logging and case sensitive handling for synonym relationship type
- 12:42 AM Revision 75f6d666 (cdmlib-apps): ref #8509 add included taxon relationship export to PESI
- 12:39 AM Revision d87e224c (cdmlib-apps): ref #5809 change partition size for source export
10/06/2019
- 03:03 PM Revision c1ff510c (taxeditor): cleanup
- 10:04 AM Revision 9afc9463 (cdmlib-apps): ref #8508 add TODO to validation
- 10:03 AM Revision 664255b8 (cdmlib-apps): ref #8508 add nomstatus, name rel and taxon rel validation
- 10:00 AM Revision 2b21e6b8 (cdmlib-apps): ref #8508 add Monera to ERMS validation again
- 09:58 AM Revision 7599c655 (cdmlib-apps): ref #1444 revert order of nomstatus to make it similar to SQL script
- 09:57 AM Revision 60d45927 (cdmlib-apps): cleanup
- 09:56 AM Revision 1bbfa4c0 (cdmlib-apps): ref #1444 fix included in and synonym relationship handling for ERMS import (1 rel per taxon)
- 09:53 AM Revision a39ba704 (cdmlib-apps): ref #1444 implement ERMS getSynonymRelationTypesByKey
- 09:52 AM Revision 6dbf7ff0 (cdmlib-apps): ref #1444 make ERMS getNomenclaturalStatusByKey case insensitiv
- 09:48 AM Revision 397a8033 (cdmlib-apps): ref #1444, ref #8508, ref #8509 move synonymTaxonRelationshiptype uuid to TaxonRelationship class
- 09:46 AM Revision b607fa1a (cdmlib-apps): ref #8509 handle doubtful NomenclaturalStatusType.COMB_NOV() to PESI export
- 09:44 AM Revision 7dcac868 (cdmlib-apps): ref #8509 add missing misapplied name and pro parte synonym relations to PESI export
- 09:42 AM Revision 0049964a (cdmlib-apps): cleanup
- 09:38 AM Revision 5ee6ca0b (cdmlib-apps): minor for Greece import
- 09:37 AM Revision 1a278727 (cdmlib): ref #1444 make getTaxonRelationshipType public in importers to make it usable in mappers
- 09:37 AM Revision 63c18ef5 (cdmlib): ref #1444 handle no language as unknown language for imported new nomenclatural status
- 09:37 AM Revision 8588c491 (cdmlib): ref #1444, ref #8509 move ERMS synonym taxon relationship uuids to TaxonRelationship class
- 09:37 AM Revision 0578d459 (cdmlib): ref #1444 adapt DbImportSynonymMapper to ERMS requirements
- 09:37 AM Revision 52c1c6a3 (cdmlib): ref #1444 add getSynonymRelationTypesByKey to IInputTransformer
- 09:37 AM Revision 95c828bc (cdmlib): ref #8509 fix NPE in getAnnotations(by type-uuid)
- 09:37 AM Revision f1319b4b (cdmlib): reduce log level for non latin nom status representations
- 09:36 AM Revision 74336004 (cdmlib): cleanup
10/04/2019
- 06:20 PM bug #8575 (New): Specimen details in PhycoBank Portal
- Example: http://phycobank.org/102053
PhycoBank Portal output
There are two issues:
(1) The footnot should lead to ... - 06:10 PM task #8574 (New): Übernahme von Namen in PhycoBank
- Wenn eine Gattung, um eine neue Art anzulegen oder ein Species Epitheton, um ein neues infraspezifisches Epitheton an...
10/02/2019
- 02:37 PM task #7976: [PESI][ERMS] Erms taxon import
- NO synonyms exist with an accepted taxon again being a synonym of another accepted taxon:
~~~
SELECT acc.id ac... - 09:12 AM task #7976: [PESI][ERMS] Erms taxon import
- ACCEPTED TAXON:
336 taxa have NO accepted taxon (tu_acctaxon IS NULL)
57003 are their own accepted taxon (tu_ac... - 08:34 AM task #7976: [PESI][ERMS] Erms taxon import
- There are 82 tu_status=accepted taxa with unaccept reason: (mail sent)
~~~
SELECT *
FROM tu
WHERE tu_status = 1... - 10:44 AM Revision d0a4f3d9 (taxeditor): ref #5873: performance issues
10/01/2019
- 03:03 PM Revision d3796291 (cdmlib): ref #5873: check for general description editing right
- 03:02 PM Revision d48b6aa4 (taxeditor): ref #5873: authentication as parameter for service method
- 01:38 PM Revision a4ff8cb0 (cdmlib): revert some changes
- 01:33 PM feature request #5873 (In Progress): Implement rights&roles for TaxEditor distribution editor
- implemented:
* check in OpenDistributionEditorHandler whether the user has the permission to edit subtree.
* filt... - 01:28 PM Revision e913a037 (cdmlib): ref #5873: filter nodes without permission
- 01:20 PM Revision 1503d9ad (taxeditor): ref #5873: check rights for selected subtree for distribution editor
- 10:14 AM Revision 9498b2f0 (taxeditor): Use parentDto() service method
09/30/2019
- 02:09 PM Revision 077e5556 (taxeditor): ref #8572: minor
- 02:04 PM feature request #7457 (Resolved): E+M: Allow filtering for only published in search
- Applied in changeset commit:taxeditor|d12fef53934e5bc7a8869160e63f6c2f1a14b52c.
- 02:04 PM Revision d12fef53 (taxeditor): fix #7457: add filter option for unpublished taxa in taxon search
- 01:54 PM bug #8573: Übernahme sec. als syn. sec.
- Can you please further define what the concrete problem is. This behavior always existed and is default. Usually syno...
- 01:47 PM bug #8533: missing collector and fieldnumber in abcd import
- I uploaded the correct tissue sample file and will test again.
- 01:24 PM bug #8533 (Resolved): missing collector and fieldnumber in abcd import
- as the used example was about two different field units I close this ticket. Please make a last review for closing th...
- 01:22 PM feature request #8572 (Resolved): Rule considered configurable
- please review
- 01:21 PM feature request #8486 (Resolved): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- now doubtful is "??", unplaced "?"
- 01:21 PM Revision 24802dc7 (taxeditor): ref #8486: add symbol to doubtful taxonnode in navigator
- 11:52 AM Revision 39af4e55 (cdmlib-apps): ref #1444 remove ErmsGeneralImportValidator from import for now
- 11:49 AM Revision dd9fed99 (cdmlib-apps): ref #8508 latest version of import + export for ERMS activators
- 11:48 AM Revision 8a133607 (cdmlib-apps): ref #1444, ref #8508 add Monera filter handling in ERMS validation and for import
- 10:32 AM Revision 651cb4bc (cdmlib-apps): ref #1444 improve handling of infra-infra-species and include test for taxon title formatting
- 10:29 AM Revision 33337032 (cdmlib-apps): ref #1444, ref #8509, ref #8508 handle NomenclaturalStatusType in ERMS pipeline
- 10:20 AM Revision bb4404d2 (cdmlib-apps): cleanup
- 10:16 AM Revision 6e51084a (cdmlib): ref #1444 allow to create new NomenclaturalStatusTypes during import
- 10:15 AM Revision f0327d32 (cdmlib): cleanup
- 09:59 AM Revision c219c816 (taxeditor): fix NPE in NameDetailsView Preference processing
09/29/2019
- 10:23 PM Revision 2cbe08de (cdmlib): cleanup
- 10:22 PM Revision 67ed9b99 (cdmlib): ref #1444 add resetTitleCache method
- 09:54 PM Revision d1dec4a7 (cdmlib): ref #1444 adapt DbImportMethodMapper for ERMS titleCache testing
- 09:52 PM Revision 2120777b (cdmlib): cleanup
- 08:33 PM Revision 118bc6b8 (cdmlib-apps): ref #8508 latest changes to PesiErmsValidator
- 08:33 PM Revision 93c92edc (cdmlib-apps): ref #8509 minor fix
- 08:32 PM Revision b91853a7 (cdmlib-apps): cleanup PesiTransformer
- 08:32 PM Revision 383b85b1 (cdmlib-apps): ref #8509 fix missing non-default language notes
- 08:30 PM Revision 9bb5ffae (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle truncated reference cache correctly
- 08:28 PM Revision a1340c69 (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle rank, kingdom and code correctly for Biota and Monera
- 08:25 PM Revision 79276af0 (cdmlib-apps): cleanup
- 08:18 PM Revision effd09f0 (cdmlib): ref #8509 handle non-default language textdata correctly in DbTextDataMapper
- 08:17 PM Revision 492451b1 (cdmlib): ref #8509 handle truncated titlecaches in DbObjectMapper correctly
- 08:16 PM Revision f19a4363 (cdmlib): cleanup
- 04:26 PM Revision 2e170952 (taxeditor): preliminary comment sectionMap handling in PreferencesUtil
- 12:33 AM Revision 2c11da48 (cdmlib-apps): ref #8508 latest changes for erms pipeline validation
- 12:33 AM Revision 7990caf9 (cdmlib-apps): ref #1444 trim notes import ERMS
- 12:32 AM Revision de3c38ba (cdmlib-apps): ref #8509 fix link (and ecology) export ERMS
- 12:30 AM Revision 80911706 (cdmlib): ref #8509 dependend IdIncMapper
- 12:29 AM Revision 11263195 (cdmlib): ref #1444 add trim to DbImportMultiLanguageTextMapper
- 12:29 AM Revision ae12a9be (cdmlib): cleanup
09/28/2019
- 09:12 PM Revision 81dfc7e2 (cdmlib-apps): ref #8509 add CommonNameSource to doDelete for ERMS export
- 09:11 PM Revision 17655285 (cdmlib-apps): ref #8509 fix ERMS image export to support multiple media
- 09:10 PM Revision 95df0734 (cdmlib-apps): ref #1444 fix sql for link import ERMS
- 09:09 PM Revision 644b2537 (cdmlib-apps): cleanup
- 07:08 PM Revision 440b7828 (cdmlib-apps): ref #8508 latest changes to ERMS validator and activators
- 07:07 PM Revision ddc988ed (cdmlib-apps): ref #1444 fix note for synonyms handling for ERMS import
- 07:06 PM Revision c32ee6d2 (cdmlib-apps): ref #8509 adapt description source handling for ERMS export
- 07:05 PM Revision 73558a3c (cdmlib-apps): ref #1444 fix note source handling in ERMS
- 07:05 PM Revision 6ae21a57 (cdmlib-apps): ref #1444, ref #8508, ref #8509 fix link handling and add ecology export to ERMS pipeline
- 07:02 PM Revision 7b61057c (cdmlib-apps): ref #1444 fix reference type handling for ERMS
- 07:00 PM Revision 2ae4e7ca (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle taxon.cacheCitation in ERMS
- 06:58 PM Revision 23801854 (cdmlib-apps): cleanup
- 06:46 PM Revision 7e6fc953 (cdmlib-apps): ref #1444, ref #8508, ref #8509 handle SpeciesExpertName in ERMS
- 06:41 PM Revision 5dc4b31d (cdmlib): ref #8509 some helper methods for ERMS export
- 06:40 PM Revision f02afae4 (cdmlib): ref #8509 new factory method for MethodMapper
- 06:40 PM Revision 88f75039 (cdmlib): ref #1444, ref #8509 add some import and export mappers
- 06:39 PM Revision aa30ebde (cdmlib): ref #1444, ref #8509 fix some import and export mappers
- 06:38 PM Revision e6f237b7 (cdmlib): cleanup
09/27/2019
- 09:49 PM bug #8565 (Closed): external links and dois no longer showing up
- NK:
ja, das Link Symbol wird angezeigt und die Weiterleitung funktioniert. - 08:42 PM bug #8573 (New): Übernahme sec. als syn. sec.
- Wenn ich im Taxonomic EDITor ein akzeptiertes Taxon in die Synonymie verschiebe, wird (neuerdings?) die sec. ref. des...
- 05:46 PM Revision 09e2bb85 (cdmlib-apps): adapt classes to changes in DbAnnotationMapper with excluded set
- 05:45 PM Revision 788f4a81 (cdmlib-apps): ref #8509 rename old PESI factual data exports
- 05:43 PM Revision 344f4ac6 (cdmlib-apps): adapt classes to changes in DbAnnotationMapper with excluded set
- 05:39 PM Revision 299bbd45 (cdmlib): ref #1444 refactor DbAnnotationMapper and add included type filtering
- 05:39 PM Revision a98f6dad (cdmlib): ref #1444 use sourceReferenceTitle instead of database name where available
- 05:39 PM Revision bd9b07e3 (cdmlib): cleanup
- 02:58 PM feature request #8572 (In Progress): Rule considered configurable
- 10:34 AM feature request #8572 (Closed): Rule considered configurable
- Rule considered is not needed in all projects, therefore it should be configurable whether it should be shown or not
- 01:29 PM Revision 6e2d027c (taxeditor): code cleaning
- 01:29 PM Revision da5756d8 (taxeditor): ref #8572: code cleaning and rule considered configurable
- 12:30 PM Revision bd0e8d04 (taxeditor): Fix for setting the cursor for key statements in detail view
- 12:21 PM Revision e52a98ef (taxeditor): Fix potential NPE
- 11:22 AM Revision a92dd19c (taxeditor): Fix class cast exception for poltomous key graph view
- 11:17 AM Revision a6871bd2 (cdmlib-apps): cleanup
- 10:34 AM feature request #8410 (Resolved): Add nomenclatural code edition to ruleConsidered in TaxEditor
- this is implemented now. Configuration is moved to new ticket (#8572).
- 10:29 AM Revision cc1f8735 (taxeditor): ref #8410: disable code edition combo when rule considered is empty
- 09:36 AM Revision 192396cd (cdmlib): ref #8450 minor refactoring
- 09:36 AM Revision 4e9c11d6 (cdmlib): ref #8450 Add sample size to quantitative data aggregate
09/26/2019
- 04:58 PM bug #8571: PolytomousKeyNode.otherNode not editable in TaxEditor
- AM:
Mir ist gerade aufgefallen, dass hinzufügen von „Other Node“ noch nicht funktioniert. Für Cuba bräuchten wir d... - 04:57 PM bug #8571 (New): PolytomousKeyNode.otherNode not editable in TaxEditor
- 04:19 PM Revision 7d377aab (taxeditor): ref #8410: add nomencl. code edition - continue
- 04:16 PM bug #8570: PolytomousKeyNode.otherNode missing in REST service response
- done!
- 04:15 PM bug #8570 (Resolved): PolytomousKeyNode.otherNode missing in REST service response
- Applied in changeset commit:cdmlib|0d7fac88d9f91c91f5233a858d4d0245e1e25af8.
- 04:14 PM bug #8570 (Closed): PolytomousKeyNode.otherNode missing in REST service response
- http://api.cybertaxonomy.org/flora-cuba/polytomousKeyNode/11be28e1-00d6-4368-89d9-16782b7e5ac8.json
lacks the dat... - 04:15 PM Revision 0d7fac88 (cdmlib): fix #8570 adding PolytomousKeyNode.otherNode to web service response
- 04:14 PM Revision ec00e362 (taxeditor): ref #8410: add nomencl. code edition
- 04:12 PM Revision 9dd11918 (taxeditor): ref #8568: performance issues for term and voc preference pages
- 03:08 PM Revision 7fc77454 (cdmlib): ref #8568: fix findByUuidsAsDto for terms
- 03:04 PM Revision 365949cd (cdmlib-apps): ref #8508, ref #8509, ref #1444 implement ERMS ref types
- 01:36 PM Revision d8f3c114 (taxeditor): fix call of removed method getAllRelationships
- 01:19 PM feature request #8569 (New): Supplemental data for PolytomousKeyNodes
- ... are currently not yet available. Click on a row in the tables only shows suppl data for key itself.
The proble... - 01:07 PM Revision d5f0d955 (cdmlib): Cleanup PolytomousKeyNode and remove deprecated methods
- 01:03 PM Revision c295928b (taxeditor): ref #8568: performance issues for term and voc preference pages
- 01:01 PM Revision 22bbda04 (cdmlib): ref #8568: methods to get term and voc dtos by uuid list
- 12:59 PM feature request #8568 (Closed): improve performance for term and vocabulary preference pages
- the performance for the term and vocabulary preference pages is really slow. We need better service methods to get th...
- 11:41 AM Revision 9355fbbb (cdmlib): ref #1444 fix ResultSetPartitioner for imports with >1 ID columns
- 11:41 AM Revision 4ad2dc40 (cdmlib): ref #8509 replace deprecated INameService.allRelationships for PESI RelTaxon export
- 11:41 AM Revision f0a9c28e (cdmlib): ref #8509 Adapt DbAnnotationMapper to work for PESI RelTaxon export
- 11:41 AM Revision 5f4207f3 (cdmlib): cleanup
- 11:40 AM Revision fc3c0b4e (cdmlib-apps): adapt BerlinModelNameRelationExport to new NameService.listNameRelationships
- 11:39 AM Revision 2cb6ad67 (cdmlib-apps): ref #8508, ref #8509, ref #1444 latest changes to ERMS import and export activators
- 11:38 AM Revision f08f9f6d (cdmlib-apps): ref #8508, ref #8509, ref #1444 fix source use for ERMS
- 11:37 AM Revision 164fc327 (cdmlib-apps): ref #8508 latest changes to PesiErmsValidator
- 11:37 AM Revision 5a251c5c (cdmlib-apps): ref #8509 fix RelTaxon export for ERMS / PESI
- 11:35 AM Revision 03241a1f (cdmlib-apps): ref #8509 fix missing rank for Biota
- 11:33 AM Revision 03538949 (cdmlib-apps): cleanup
- 11:25 AM Revision d3530340 (cdmlib-apps): ref #8508, ref #8509, ref #1444 add additional taxon source handling for ERMS/PESI
- 09:48 AM Revision 9ba00ebb (cdmlib): ref #8450 Only clone specimen descriptions once
09/25/2019
- 08:59 PM feature request #8226: make modifiers for description elements configurable
- why did you remove the target version? On purpose?
- 02:06 PM feature request #8226: make modifiers for description elements configurable
- please review
- 02:06 PM feature request #8226 (Resolved): make modifiers for description elements configurable
- Applied in changeset commit:taxeditor|e056e66eb1fd2b32b4f2fa71bed1ce0496c6af22.
- 04:52 PM bug #8567 (Worksforme): registration search results: cdm_compose_url(): missing pathParameter 0 for !uri_pattern
- The registration search results page shows errors:
~~~
cdm_compose_url(): missing pathParameter 0 for !uri_patte... - 02:05 PM Revision 2b4872ec (taxeditor): correct handling of allowOverride in taxonnode admin preferences
- 02:04 PM Revision e056e66e (taxeditor): fix #8226: add new preferences for modifiers
- 01:59 PM Revision 6730fa80 (cdmlib): ref #8226: add new preferencePredicate for modifiers
- 01:28 PM Revision ae492166 (taxeditor): Combine "feature" and "question" column
- 12:12 PM Revision ccd07768 (cdmlib): ref #8450 Speed up loading of categorical state data
- 11:48 AM Revision 2de9b87d (taxeditor): Fix "feature" column
09/24/2019
- 07:14 PM Revision f2f8c0cc (cdmlib): ignore EuroPlusMedCondensedDistributionComposerTest again. Throws exception in maven
- 07:08 PM Revision 55ef5e30 (cdmlib): refactoring
- 04:28 PM Revision 51f36cbb (cdmlib): ref #8450 Only aggregate statistical quantitative data
- 03:34 PM Revision f820f667 (cdmlib): ref #8450 Do not show duplicate categorical states in aggregation
- 03:34 PM Revision 0bdf5a9c (taxeditor): Add "feature" column to polytomous key node editor
- 03:31 PM Revision 33be43d1 (taxeditor): Fix potential NPE
- 02:40 PM Revision fa72a2a0 (cdmlib): cleanup KeyStatement and PolytomousKeyNode
- 02:40 PM Revision 416261db (cdmlib): cleanup
- 02:40 PM Revision 9ecae4a9 (cdmlib): unignore EuroPlusMedCondensedDistributionComposerTest
- 11:35 AM Revision 7bb2a528 (taxeditor): Merge branch 'master' into develop
- 11:33 AM Revision 21e25285 (taxeditor): fix import
- 10:55 AM Revision 420b21d7 (taxeditor): Merge branch 'master' into develop
- 10:48 AM Revision 092b48da (taxeditor): fix compile error
09/23/2019
- 02:47 PM Revision e8a240c5 (cdmlib): ref #8467 Fix re-save problem when deleting clone sources
- 02:39 PM Revision 517899da (taxeditor): Add description types to description detail element
- 01:59 PM Revision 91f6c4c6 (cdm-server): Merge branch 'release/5.10.0' into develop
- 01:59 PM Revision 7cdc9603 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 01:58 PM Revision 77572806 (cdm-server): updating poms for branch'release/5.10.0' with non-snapshot versions
- 01:58 PM Revision 3a20e9fa (cdm-webapp): Merge branch 'release/5.10.0' into develop
- 01:58 PM Revision 6eea7617 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 01:57 PM Revision 1fb06c09 (cdm-webapp): updating poms for branch'release/5.10.0' with non-snapshot versions
- 01:57 PM Revision 8e4d8682 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.10.0
- 01:38 PM Revision 93c5fb44 (cdmlib): Revert "Revert "ref #8467 Save cloned source description for aggregation""
- This reverts commit d646ba64ca8adcdfcc04b21e80c9d98da6b6f6f3.
- 01:31 PM Revision 06da5617 (cdm-vaadin): Merge branch 'release/5.10.0' into develop
- 01:31 PM Revision b44966bc (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 01:27 PM Revision 53bf34b2 (cdm-vaadin): updating poms for branch'release/5.10.0' with non-snapshot versions
- 01:27 PM Revision 32041f6c (cdm-vaadin): jenkins bumping cdmlib.version to 5.10.0
- 01:27 PM Revision 619409dc (taxeditor): Merge branch 'release/5.10.0' into develop
- 01:27 PM Revision 807d4d22 (taxeditor): Merge branch 'release/5.10.0'
- 01:26 PM Revision 7d314a95 (cdm-dataportal): Merge branch 'release/5.10.0' into develop
- 01:26 PM Revision 099d2f35 (cdm-dataportal): updating poms for branch'release/5.10.0' with non-snapshot versions
- 01:26 PM Revision 854c6849 (cdm-dataportal): release-preparation: production level css
- 01:25 PM Revision 3426fa1f (cdmlib): Updating develop poms back to pre merge state
- 01:25 PM Revision e6b50446 (cdmlib): Merge branch 'master' into develop
- 01:25 PM Revision b088e497 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 01:25 PM Revision da9461a4 (cdmlib): Merge branch 'release/5.10.0'
- 01:03 PM Revision b7402ebb (cdmlib): updating poms for branch'release/5.10.0' with non-snapshot versions
- 12:57 PM bug #8566 (Rejected): Recursive aggregation for common parent taxon does not work if not in data set
- If you aggregate a dataset and the common parent taxon is not part of the data set the aggregation will not performed...
- 12:31 PM Revision 8f35b694 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.10.0-SNAPSHOT
- 12:31 PM Revision 43ba9e4c (cdm-webapp): updating poms for 5.11.0-SNAPSHOT development
- 12:31 PM Revision 7bbf3808 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.11.0-SNAPSHOT
- 12:31 PM Revision fd9734ef (cdm-server): updating poms for 5.11.0-SNAPSHOT development
- 12:30 PM Revision dddf4caf (cdm-dataportal): updating poms for 5.11.0-SNAPSHOT development
- 12:30 PM Revision 83f6b260 (taxeditor): Updated version in pom / project files to taxeditor version : 5.11.0-SNAPSHOT and cdmlib version : 5.11.0-SNAPSHOT
- 12:30 PM Revision cb1e67fb (taxeditor): Updated version in pom / project files to taxeditor version : 5.10.0 and cdmlib version : 5.10.0
- 12:27 PM Revision 0c20eece (cdm-vaadin): jenkins bumping cdmlib.version to 5.10.0-SNAPSHOT
- 12:27 PM Revision ad2d55ee (cdm-vaadin): updating poms for 5.11.0-SNAPSHOT development
- 12:27 PM Revision 16928bc0 (cdm-vaadin): updating poms for 5.10.0 branch with snapshot versions
- 12:27 PM Revision f44bf7da (cdm-vaadin): jenkins bumping cdmlib.version to 5.11.0-SNAPSHOT
- 12:23 PM Revision 06f202a9 (cdmlib): updating poms for 5.11.0-SNAPSHOT development
- 12:13 PM Revision a32f2bd0 (cdmlib): ref #1444 add new ISourceable.add method
- 12:12 PM Revision 3df6d29d (cdmlib): cleanup condensedDistribution classes
- 11:07 AM Revision d646ba64 (cdmlib): Revert "ref #8467 Save cloned source description for aggregation"
- This reverts commit 16bda3fbbc8445d98653d209e8fe27f611a99890.
- 10:21 AM Revision 16bda3fb (cdmlib): ref #8467 Save cloned source description for aggregation
- 10:16 AM Revision 3161ee3f (cdm-dataportal): fix #8565 switching to fa-external-link-square-alt as fa-external-link-square is no longer in the set of free icons
- 09:46 AM bug #8565: external links and dois no longer showing up
- fixed, please review
- 09:44 AM bug #8565 (Resolved): external links and dois no longer showing up
- Applied in changeset commit:cdm-dataportal|d337d8518ad929552aed9a5af0aaf5bd2395ac16.
- 09:43 AM bug #8565 (Closed): external links and dois no longer showing up
- Example: http://cichorieae.e-taxonomy.net/portal/cdm_dataportal/taxon/79d6b29a-7a73-42b6-a024-2ab35fbd60ff
the ref... - 09:45 AM Revision 667f16d4 (cdm-dataportal): proper initialization of block->content array
- 09:44 AM Revision d337d851 (cdm-dataportal): fix #8565 switching to fa-external-link-alt as fa-external-link is no longer in the set of free icons
09/20/2019
- 05:35 PM bug #8564 (Closed): Link to PlatformDocumentation wiki page
- 05:34 PM bug #8564 (Resolved): Link to PlatformDocumentation wiki page
- Applied in changeset commit:taxeditor|55f947d6422ef6e30616a96c07b9e3ac80081e47.
- 04:31 PM bug #8564 (Closed): Link to PlatformDocumentation wiki page
- The taxeditor site page *manual* needs to link to the PlatformDocumentation page
https://cybertaxonomy.eu/taxedi... - 05:34 PM Revision 55f947d6 (taxeditor): fix #8564 linking to documentation in the wiki
- 03:53 PM EDIT Platform Etablierung task #8563 (Closed): Implement process to generate PDFs from the docx files
- pdf cretated and published in [[edit:PlatformDocumentation]]
- 03:52 PM EDIT Platform Etablierung task #8563 (Resolved): Implement process to generate PDFs from the docx files
- Script attachment:make-pdfs.sh created in `bgbmc2.bgbm.fu-berlin.de:/GRUPPEN/BDI/EDIT-Plattform/_Latest Versions/User...
- 03:49 PM EDIT Platform Etablierung task #8563 (Closed): Implement process to generate PDFs from the docx files
- The documentation which is managed in `bgbmc2.bgbm.fu-berlin.de:/GRUPPEN/BDI/EDIT-Plattform/_Latest Versions/User Man...
- 12:08 PM Revision 41806880 (taxeditor): Add Character to "Other" section in term editor
- 11:33 AM Revision 581e5401 (taxeditor): ref #8562: add override allowed column to distr. status preference page
- 11:14 AM bug #8562 (Feedback): Remaining issues for preference pages
- * Menu Labels:
* ~~Multi-Language Support => Application~~
* Available Languages => ~~Multi-Language Sup... - 11:03 AM Revision b9731166 (taxeditor): ref #8489: move taxonnode wizard pref to navigator page
- 10:21 AM Revision c82a0bdd (taxeditor): ref #8489: some issues in DistributionStatusPreferences
- 09:09 AM task #8561 (New): Evaluation of options for a "one klick" setup in cloud environments
* Installation auf Knopfdruck bei Cloude-Anbietern (Google, AWS, ...)?
* Wie kann das technisch so realisiert werd...- 09:08 AM task #8560 (New): Identification of single user problems with the platform
- copied from [[Meeting_2019-09-07]]
* bei der lokalen Platform-Installation
* fehlendes Backup - 07:45 AM Revision cdf40074 (taxeditor): Do not show subtypes in term editor
- 07:45 AM Revision 91568991 (cdmlib): Add flag to filter subtypes in service method
09/19/2019
- 06:31 PM task #8559 (Worksforme): Revision of the technical concept for the demosites
- from [[Meeting_2019-09-02]]
* "AK entwickelt Konzept für die Demo-Sites und damit den technischen Hintergrund von ... - 06:28 PM discussion #8558 (Closed): Questionaire to get user feedback
- from [[Meeting_2019-09-02]]
AK entwickelt einen einen Fragenkatalog, anhand dessen Interviews mit Nutzern geführt ... - 06:25 PM task #8557 (New): Reorganization of platform user documentation
- Spezialfunktionen von einleitenden Teilen abgrenzen und in Teildokumentationen gliedern.
- 06:24 PM EDIT Platform Etablierung report #8556 (Closed): sifting of existing documentation
- Documentation mainly exists at `bgbmc2.bgbm.fu-berlin.de:/GRUPPEN/BDI/EDIT-Plattform/_Latest Versions/User Manual/`
... - 05:25 PM EDIT Platform Etablierung task #8555 (Closed): Evaluate document format and management for the documentation
- 1. research on suitable document formats
1. documentation within the taxeditor would be preferable (see [[Meeting_20... - 04:34 PM Revision 4f8c0d92 (taxeditor): Fix potential NPE
- 04:31 PM Revision eeca944f (cdmlib): cleanup
- 04:28 PM bug #8488 (Closed): Characters can not be added to feature trees
- Currently it is not possible to select a Character term itself because the vocabulary for that is not accessible from...
- 03:06 PM bug #8488 (Feedback): Characters can not be added to feature trees
- Adding via context menu is possible but not via d&d. To close this ticket we should either implement d&d also or crea...
- 04:28 PM feature request #8554 (Duplicate): Allow drag&drop from character into FeatureTrees
- ~~Currently it is not possible to select a Character term itself because the vocabulary for that is not accessible fr...
- 03:23 PM bug #8329 (Worksforme): Multiple representations exception when adding name relationship with already existing author
- I also can't reproduce anymore.
- 01:54 PM Revision efc4a9f8 (taxeditor): ref #8494: layout issues in abcd import preference page
- 01:43 PM Revision ce80191a (taxeditor): ref #7321 fix NPE in PolytomousKeyListLabelProvider (II)
- 01:33 PM bug #8382 (Closed): Local Supplemental Data Source Preferences should reflect the state of admin preferences
- Works as expected and can be closed
- 01:30 PM Revision 5c7792df (cdmlib): ref #8450 Move key generation to long running task
- 01:30 PM Revision 8ab41788 (taxeditor): ref #8450 Move key generation to long running task
- 01:28 PM bug #8034 (Closed): Recently used references shows all references
- works fine
- 01:16 PM Revision a6381bb2 (cdmlib): fix NPE in abcd import
- 12:40 PM Revision 1d03dc2b (cdmlib): minor
- 12:27 PM Revision 152b29a9 (cdmlib): ref #8469 fix NoSuchElementException (but issue itself might still be open)
- 12:23 PM Revision 2033d56d (cdmlib): add derivedFrom to propertyPath in findFieldUnitDTO
- 11:58 AM Revision f74a7b15 (taxeditor): minor
- 11:41 AM Revision 9b1e9a85 (cdmlib): ref #8533: minor
- 11:27 AM Revision 581bf882 (taxeditor): ref #7321 fix NPE in PolytomousKeyListLabelProvider
- 11:26 AM Revision 2f767512 (cdmlib): removing AdvancedBeanInitializer log level TRACE
- 10:26 AM bug #8553: progress monitor needs information about running process
- Is there a reason why you explicitly mentioned cdmlight in title? I think this information should be available for al...
- 09:57 AM bug #8553 (New): progress monitor needs information about running process
- long running tasks like the cdmlight export sometimes need a lot of ressources.
To get more informations about why ... - 10:09 AM Revision 301fa63e (cdmlib): ref #8450 Optimize aggregation
- - Only aggregate descriptions with character data
- delete all aggregation before new aggregation - 09:55 AM Revision c335a01c (taxeditor): ref #8450 Create and cache label for quantitative data in row wrapper
- 09:45 AM bug #8533: missing collector and fieldnumber in abcd import
- the imported field unit for B GT 0023581 has collector and fieldNumber see attached file (picture607-1.png)
- 09:42 AM bug #8533: missing collector and fieldnumber in abcd import
- Patrick Plitzner wrote:
> ok, this seems to be a bigger problem.
>
> If you compare your debug output with the tw... - 09:42 AM Revision 7a6a6604 (cdmlib): ref #8450 Create and cache label for quantitative data in row wrapper
09/18/2019
- 07:36 PM bug #8329 (Feedback): Multiple representations exception when adding name relationship with already existing author
- 03:55 PM bug #8329 (Closed): Multiple representations exception when adding name relationship with already existing author
- Played aroung on on rem_conf_am with nightly build and could not reprodcue the problem
- 06:23 PM Revision 4c331cd7 (cdm-dataportal): fixing and improving test assertions
- 05:56 PM bug #8034 (Resolved): Recently used references shows all references
- fix is committed, please review.
- 05:51 PM bug #8034: Recently used references shows all references
- Patrick Plitzner wrote:
> Hmm, now when I already have a reference for the secundum, the selection dialog only shows... - 05:26 PM bug #8034: Recently used references shows all references
- Hmm, now when I already have a reference for the secundum, the selection dialog only shows some of the last used refe...
- 05:11 PM bug #8034: Recently used references shows all references
- Katja Luther wrote:
> Did you selected the book in a selection dialog or only in bulk editor? The recently selected ... - 04:53 PM bug #8034: Recently used references shows all references
- Did you selected the book in a selection dialog or only in bulk editor? The recently selected references are only for...
- 03:42 PM bug #8034: Recently used references shows all references
- ok, I tested the recently selected references with Article and Journal as InReference which works fine. Nevertheless ...
- 03:38 PM bug #8034: Recently used references shows all references
- Another thing I tested:
1. I imported a specimen via ABCD import which had the generic reference "DNA_Bank"
1. I ... - 03:35 PM bug #8034: Recently used references shows all references
- the reference needs to be an article because therefore an inreference type exist
- 03:33 PM bug #8034 (Feedback): Recently used references shows all references
- I am not sure if I tested this correctly. Here is what I did:
1. I selected a Generic reference as secundum for on... - 05:55 PM Revision 25e92728 (taxeditor): ref #8034: fixes for recently selected references
- 05:42 PM Revision 3ea88987 (taxeditor): ref #8034: fix handling with recently selected references in s
- 05:36 PM Revision 030ddaa9 (taxeditor): ref #8450 Only save edited rows in matrix editor
- 05:05 PM bug #8386 (Closed): Disable admin menu when not logged into a DB
- works fine
- 02:17 PM bug #8386 (Resolved): Disable admin menu when not logged into a DB
- fixed with commit:taxeditor|c2b34f0b89feff1b91fdb6eaa3434cad9dfa510f
- 05:04 PM bug #8533: missing collector and fieldnumber in abcd import
- ok, this seems to be a bigger problem.
If you compare your debug output with the two files it seems like it has mi... - 04:47 PM bug #8533 (In Progress): missing collector and fieldnumber in abcd import
- I think we have to move this to 5.11
- 04:46 PM bug #8533: missing collector and fieldnumber in abcd import
- Patrick Plitzner wrote:
> Katja Luther wrote:
> > the collector problem is solved, but the fieldnumber is not deliv... - 04:44 PM bug #8533: missing collector and fieldnumber in abcd import
- Katja Luther wrote:
> ah there is another problem, the gathering agent for the tissue is Hutchison and for the tissu... - 04:43 PM bug #8533: missing collector and fieldnumber in abcd import
- Katja Luther wrote:
> the collector problem is solved, but the fieldnumber is not delivered. I debugged and also loo... - 04:37 PM bug #8533: missing collector and fieldnumber in abcd import
- ah there is another problem, the gathering agent for the tissue is Hutchison and for the tissue sample Lautner
- 04:34 PM bug #8533: missing collector and fieldnumber in abcd import
- the collector problem is solved, but the fieldnumber is not delivered. I debugged and also looked at the output and t...
- 03:20 PM bug #8533 (Feedback): missing collector and fieldnumber in abcd import
- I attached the two sample file: one is the DNA unit the other one the associated tissue sample.
I tested on night... - 05:00 PM feature request #8489: Further issues for DB preferences
- move to 5.11 for a last review whether all (wanted) preferences are available as db preferences
- 04:58 PM task #8458 (In Progress): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- 04:56 PM bug #8494 (In Progress): Better ABCD Preferences Page
- I move this to 5.11 to solve the layout issues.
- 02:39 PM bug #8494: Better ABCD Preferences Page
- Andreas Müller wrote:
> >This is fixed but still "Restore default" does not completely remove the preference (and ev... - 02:25 PM bug #8494: Better ABCD Preferences Page
- >This is fixed but still "Restore default" does not completely remove the preference (and even does not clear the exi...
- 02:23 PM bug #8494: Better ABCD Preferences Page
- The "New provider" text field should have a label "New provider" or similar. Also the "Add Provider" button should be...
- 02:22 PM bug #8494: Better ABCD Preferences Page
- Second time it worked but still there was an empty entry in the provider list
- 02:20 PM bug #8494: Better ABCD Preferences Page
- Trying to create a new provider results in
~~~
login : admin
editor version : 5.10.0.201909180750
server : loc... - 02:19 PM bug #8494 (Feedback): Better ABCD Preferences Page
- is #8385#note-51 already fixed? It is part of **this** ticket description! (copied from)
The field NomenclaturalCo... - 01:10 PM bug #8494 (Resolved): Better ABCD Preferences Page
- The issues above are solved, so I think we can close this ticket.
- 04:54 PM Revision fde0968c (cdm-dataportal): fixing and improving test assertions
- 04:54 PM Revision d8de8d4d (cdm-dataportal): fixing order of typedesignations in registration page
- 04:53 PM task #8456 (Closed): FieldUnitDTO: remove newInstanceMethod
- Katja Luther wrote:
> sorry I missed to add the last commit to this ticket.
Yes, I just realized that, too.
co... - 04:51 PM task #8456 (Resolved): FieldUnitDTO: remove newInstanceMethod
- 04:50 PM task #8456: FieldUnitDTO: remove newInstanceMethod
- sorry I missed to add the last commit to this ticket.
- 04:41 PM task #8456: FieldUnitDTO: remove newInstanceMethod
- Katja Luther wrote:
> Patrick Plitzner wrote:
> > looks fine. Only on question: Why did you remove the null check w... - 04:39 PM task #8456: FieldUnitDTO: remove newInstanceMethod
- Katja Luther wrote:
>
> the null check is now in the gatheringEventDto
The parameter `gathering` is not checked... - 04:30 PM task #8456: FieldUnitDTO: remove newInstanceMethod
- Patrick Plitzner wrote:
> looks fine. Only on question: Why did you remove the null check when creating the Gatherin... - 04:08 PM task #8456 (Feedback): FieldUnitDTO: remove newInstanceMethod
- looks fine. Only on question: Why did you remove the null check when creating the GatheringEvent -> https://dev.e-tax...
- 04:04 PM feature request #8350 (Closed): Search dialog for named areas should work with abbreviations
- tested on nightly. works fine.
- 03:51 PM feature request #8123 (Closed): Make available features a DB preference
- tested on nightly for local and DB prefs. works fine.
- 03:43 PM task #8130: Check if related feature data is cleared when supported facts type is changed
- Move to next milestone for remaining discussion
- 03:43 PM feature request #8242: Implement filtered combo boxes for state selection in CharacterMatrix
- Move to next milestone because this is still considered experimental
- 03:05 PM bug #7321 (Closed): multi-language textfields should not show empty text when there is text
- tested on nightly. works fine
- 02:42 PM Revision c1bd899f (taxeditor): use last selected abcd provider for import
- 02:24 PM feature request #8539 (Closed): Add IndividualsAssociation when adding specimens to the character matrix
- IndividualsAssocations are created when adding specimens which do not yet have one.
Still experimental so no revie... - 02:22 PM feature request #8335 (Closed): Store character matrix table state as DB preference
- closing the ticket -> created a new ticket for using the preference cache #8552
- 02:22 PM bug #8552 (Closed): Avoid DB call for matrix state DB preferences
- Copied from #8335:
looks fine, but if you want to avoid a db call, you can use CdmPreferenceCache.instance().get(P... - 02:19 PM bug #8488 (Resolved): Characters can not be added to feature trees
- 02:11 PM Revision 5bceba97 (taxeditor): ref #8494: save last abcd import configurator
- 01:46 PM feature request #8469 (In Progress): Open PolytomousKeyGenerator issues
- 01:39 PM bug #8517 (Feedback): SpecimenOrObservation: data from protected titleCache missig in portal pages
- This seems to work but handling the protected title cache of the **field** unit in the **derived**unit cachestrategy ...
- 01:20 PM Revision 547189fd (taxeditor): ref #8494: abcd config nom. code is set to default nom. code
- 01:03 PM Revision 5d616c75 (taxeditor): fix taxon search configurator preference
- 12:46 PM Revision 49fbe818 (cdmlib): add ExactValue to possible input for PolytomousKeyGenerator
- 11:43 AM Revision e07260d7 (cdmlib): some cleanup in PolytomousKeyGenerator
- 11:39 AM Revision 430c5895 (taxeditor): fix taxon search configurator preference
- 10:49 AM Revision b42c7515 (cdmlib-apps): ref #8509 fix missing IsraeliExclusiveEconomicZone issue
- 10:48 AM Revision c32dfb15 (cdmlib-apps): ref #1444, ref #8508, ref #8509 improve ERMS notes pipeline
- 10:44 AM Revision 23a201e7 (cdmlib-apps): ref #1444, ref #8508, ref #8508 Finish ERMS image import and some export improvement (not yet ready)
- 10:41 AM Revision 79c223b6 (cdmlib-apps): cleanup
- 10:37 AM Revision 93243e0f (cdmlib): ref #1444 fix missing status in DistributionCreation for ERMS
- 10:36 AM Revision 2dd7e54d (cdmlib): cleanup
- 09:36 AM Revision 9fb73f2a (taxeditor): minor in l10n
09/17/2019
- 05:03 PM Revision 41027fc8 (cdmlib): ref #1444 fix feature creation mapper on setting the feature to the object
- 05:03 PM Revision db5a2cc2 (cdmlib): cleanup
- 04:41 PM Revision c2f509ab (taxeditor): ref #8450 Use cached display data for matrix cells
- 04:40 PM Revision 14ce7344 (cdmlib): ref #8450 Cache display data in row wrapper
- 04:26 PM bug #8382 (Resolved): Local Supplemental Data Source Preferences should reflect the state of admin preferences
- 04:26 PM bug #8382: Local Supplemental Data Source Preferences should reflect the state of admin preferences
- this is fixed with #8489
- 03:33 PM Revision 64705220 (taxeditor): ref #8329: fix multiple representation exception
- 03:33 PM bug #8329 (Resolved): Multiple representations exception when adding name relationship with already existing author
- with the last commit, I could not reproduce this problem anymore. please review.
- 03:23 PM bug #8551 (New): Some preferences should be available without login
- Some preferences like the application language should be available even if not logged into a database.
Currently t... - 02:59 PM bug #7321: multi-language textfields should not show empty text when there is text
- this is fixed.
please review. - 02:59 PM bug #7321 (Resolved): multi-language textfields should not show empty text when there is text
- Applied in changeset commit:taxeditor|3ac05bdb7abe97395018f3fbd57ed143c1a018d7.
- 02:59 PM bug #8034: Recently used references shows all references
- Applied in changeset commit:taxeditor|44bee70cbd379cac7115a2e9de9fda497fd4894f.
- 02:17 PM bug #8034 (Resolved): Recently used references shows all references
- this is fixed. please review.
For review you should open a reference selection dialog and choose a journal.
In a... - 02:58 PM Revision 3ac05bdb (taxeditor): fix #7321: check whether text of default language is set otherwise get another language
- 02:58 PM Revision 44bee70c (taxeditor): fix #8034: preselected references should have correct type
- 02:37 PM bug #7766 (In Progress): Remaining issues for using relationship DTO webservice in portal
- The sort order seem to have problems. Is this an regression or has this point be missed?
- 02:37 PM Revision 91408e53 (cdmlib-apps): ref #8509 increase number of taxa for description export partition
- 02:36 PM Revision 405dc768 (cdmlib-apps): ref #1444, ref #8508, ref #8509 some improvements on ERMS taxon source pipeline
- 02:35 PM Revision 047b2976 (cdmlib-apps): ref #1444, ref #8508, ref #8509 some improvements on ERMS notes and source uses pipeline
- 02:33 PM feature request #8092 (Closed): set default for term and vocabulary selection preferences in selection wizard
- I think this is solved with #8489
- 02:32 PM Revision 7487f98f (cdmlib-apps): ref #1444, ref #8508, ref #8509 improve ERMS vernacular name transformations
- 02:30 PM Revision fa27ce80 (cdmlib-apps): ref #1444, ref #8508, ref #8509 improve ERMS distribution pipeline
- 02:29 PM feature request #8335 (Feedback): Store character matrix table state as DB preference
- looks fine, but if you want to avoid a db call, you can use CdmPreferenceCache.instance().get(PrefKey key)
instead ... - 02:24 PM Revision 1437e192 (cdmlib-apps): ref #8509 improve isPesi taxon handling for export
- 02:23 PM Revision f8226169 (cdmlib-apps): ref #1444, ref #8508, ref #8509 improve rank handling in ERMS pipeline (II)
- 02:19 PM Revision 6535f3fe (cdmlib-apps): ref #8509 latest changes to PesiExportActivatorERMS
- 02:19 PM Revision c3b66cac (cdmlib-apps): ref #1444 latest changes to ErmsImportActivator
- 02:18 PM Revision d7f95f72 (cdmlib-apps): ref #1444, ref #8508, ref #8509 improve rank handling in ERMS pipeline
- 02:12 PM Revision e126ec3a (cdmlib): ref #8034: filter last selected references by inReference type
- 02:12 PM Revision 6af26c13 (cdmlib): ref #8034: filter last selected references by inReference type
- 02:10 PM Revision f953097d (cdmlib-apps): ref #8509 adapt log4j.properties for PESI export
- 02:09 PM Revision 3b2e07f3 (cdmlib-apps): adapt FaueEuErmsMergeActivator to TaxonName.addRelationship changes
- 02:08 PM Revision 668cae43 (cdmlib-apps): ref #1444 adapt ERMS vernacular name import
- 02:07 PM Revision 3c993316 (cdmlib-apps): ref #8509 handle doEmpty tables for PesiDescriptionExport
- 02:05 PM Revision b4ffff96 (cdmlib-apps): adapt FaueEuTaxonNameImport to TaxonName.addRelationship changes
- 02:04 PM Revision a0f9168d (cdmlib-apps): ref #8508 latest changes to ERMS pipeline validation
- 02:03 PM Revision 1491a132 (cdmlib-apps): cleanup
- 02:00 PM Revision 710a5727 (taxeditor): ref #8450 Display full statistical measure label
- 01:54 PM Revision d8053698 (cdmlib): ref #8509 reduce logging for multiple sources problem
- 01:54 PM Revision 1adda666 (cdmlib): ref #1444 fix image import mapping
- 01:54 PM Revision 9db13e41 (cdmlib): fix (revert) incorrect signature in DbLanguageMapper
- 01:54 PM Revision 0997cbeb (cdmlib): update Feature mapper to set the feature immediately to the description item
- 01:54 PM Revision 865c4dc7 (cdmlib): cleanup
- 12:57 PM Revision c88416e1 (cdm-dataportal): ref #7766 completing test case
- 12:36 PM bug #8550 (New): taxon concept relationship editor is hard to find
- It is hard to find the editor for taxon relationships. The UI gives not hints.
![](picture380-1.png)
This view... - 12:34 PM feature request #8350 (Resolved): Search dialog for named areas should work with abbreviations
- the search dialog searches for the selected abbreviation when the preference is set (default is the titlecache).
Y... - 12:31 PM task #8458 (Resolved): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- Applied in changeset commit:cdmlib|6b929840715bd88dc66fd3f0cc9abd88530b2487.
- 12:31 PM Revision 6b929840 (cdmlib): fix #8458: remove unused parameter
- 12:25 PM bug #8531: factual data and media view always opened when opening taxon
- the editor now remember whether the facts and media view were open before distribution editor was opened and dependin...
- 12:21 PM task #8425 (Closed): FieldUnitDTO: remove taxonRelatedDerivedUnits
- it is removed.
- 12:19 PM Revision a853ae40 (cdmlib): fix NPE in FieldUnitDto
- 12:07 PM Revision 87b9d856 (taxeditor): ref #8489: show local values in local distr status table
- 11:33 AM feature request #8409 (Closed): add nomenclatural code select to NameRelationField
- Wolf-Henning Kusber wrote:
> works for me as implemented.
>
> Would like to see for all codes ICBN (in capital le... - 11:18 AM feature request #8409: add nomenclatural code select to NameRelationField
- works for me as implemented.
Would like to see for all codes ICBN (in capital letters) except of 2011, and 2018 = ... - 11:11 AM feature request #8409: add nomenclatural code select to NameRelationField
- > Was genau ist mit NameRelationField gemeint? Wir haben so etwas bisher nur bei "Orthographical correction"
Das g... - 10:52 AM feature request #8409: add nomenclatural code select to NameRelationField
- Rückfrage: bei allen Namen ist die "NomenclaturalStatusRow". Was genau ist mit NameRelationField gemeint? Wir haben s...
- 11:31 AM task #8456: FieldUnitDTO: remove newInstanceMethod
- please review
- 11:31 AM task #8456 (Resolved): FieldUnitDTO: remove newInstanceMethod
- Applied in changeset commit:cdmlib|ed34f59fbc07b3029f7c6f939d2108fc324a7d08.
- 11:31 AM Revision ed34f59f (cdmlib): fix #8456: remove newInstance methof in FieldUnitDTO
- 11:24 AM Revision bd131507 (cdm-dataportal): ref #8134 fixing wrong case in type designation status labels
- 11:16 AM Revision f186b3b2 (cdmlib): add citation to type statement in cdm light export
- 11:15 AM Revision f6bc63b0 (cdm-dataportal): avoiding access to unset variable
- 11:07 AM bug #8376 (Closed): RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting of a popup editor has been triggered
- 10:01 AM bug #8376: RegistrationWorkingsetEditor: prevent clicking any futher buttons after the openting of a popup editor has been triggered
- resolved, ticket can be closed.
- 11:07 AM bug #8377 (Closed): TypeDesignationsEditors: Delete must not be allowe before the workingset is saved
- 10:12 AM bug #8377: TypeDesignationsEditors: Delete must not be allowe before the workingset is saved
- no problems with name types and specimen types to not save erroneously opened editors or close editors with informati...
- 11:07 AM bug #8527 (Closed): TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is saved a second time
- 10:39 AM bug #8527: TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is saved a second time
- No problems with orthographical corrections. Ticket can be closed.
- 10:33 AM bug #8527: TaxonNameEdior: 'Validations' and 'Orthographocal corrections' are lost when editor is saved a second time
- So far no problems with orthographical variants.
No problems with validations. Ex-author teams are shown once the ... - 11:06 AM feature request #8408 (Closed): add nomenclatural code select to NomenclaturalStatusRow
- 10:49 AM feature request #8408: add nomenclatural code select to NomenclaturalStatusRow
- issue resolved, ticket can be closed.
- 11:06 AM feature request #8342 (Closed): shift field Field number
- 09:57 AM feature request #8342: shift field Field number
- perfect, ticket can be closed.
- 11:04 AM Revision 9f9135ff (cdm-dataportal): avoiding access to unset variable
- 11:02 AM feature request #8549 (New): while abcd import problems should be logged more in detail
- this is a ticket to collect all that needs to be handled more in detail while abcd import:
problems like different... - 10:59 AM bug #8548 (Closed): ReferenceEditor: Layout problem when opening Reference editor (new journal, new book, new thesis)
- Layout when opening Reference editor (new journal, new book, new thesis).
see test system, as of 17 Sept 2019. are... - 10:56 AM bug #8533 (Resolved): missing collector and fieldnumber in abcd import
- problems like this should be handled more in detail and the user should be informed about this problems. Therefore I ...
- 10:49 AM feature request #8123 (Resolved): Make available features a DB preference
- 10:44 AM feature request #8123: Make available features a DB preference
- Name facts and taxon facts are preferences available as local and db preference, at the moment there is no vocabulary...
- 10:42 AM bug #8547: Default type of a newly created inReference should depend on the type of the reference
- this problem appears only when the newly created in-reference is not of the type journal.
- 10:18 AM bug #8547 (Closed): Default type of a newly created inReference should depend on the type of the reference
- mail from WB:
Hallo,
ich habe ausgehend vom Details view eine neue NomReferenz (Artikel) eingegeben. Dabei musste... - 10:21 AM Revision 8c34de8f (cdmlib): Fix potential NPE
- 08:48 AM Revision 0fd965ee (cdm-dataportal): ref #8134 simplifying code
- 08:40 AM Revision 85ac09e7 (cdm-dataportal): ref #8134 reverting change which caused duplication of annotation footnotes
- 08:27 AM Revision f3baa35e (cdm-dataportal): fixing bug in initialization of feature_block_distribution
09/16/2019
- 02:48 PM Revision db45a69b (taxeditor): Fix potential NPE
- 02:35 PM Revision f8fa200d (taxeditor): ref #8489: code cleaning
- 01:59 PM feature request #8489 (In Progress): Further issues for DB preferences
- 01:58 PM Revision 6fd0ac3c (taxeditor): ref #8489: improve table on dist status preference page
- 01:29 PM Revision 12c30592 (cdmlib): ref #8450 Fix potential mysql syntax exception
- 12:45 PM Revision b2a4dcd5 (cdmlib-apps): adapt app-import to changes in taxonName.addRelationship
- 12:41 PM Revision 0813a168 (taxeditor): fix potential NPE in NameDescriptionFilter
- 12:36 PM Revision 9557c1a9 (taxeditor): fix potential NPE in NameDescriptionFilter
- 12:25 PM Revision 29d0296e (taxeditor): fix potential NPE in NameDescriptionFilter
- 12:03 PM task #8546 (New): type specimen editor: published in vs. designated by
- Normally the bibliographical authors are also nomenclatural authors who designate types, so far no problem.
If a tre... - 11:19 AM bug #8545 (New): Name editor: Erroneous status in Status type cannot be made withdrawn
- Example: Navicula tenuis F.Meister was erroneously set as "illegitimate"
It was not possible to make this reversible... - 10:33 AM Revision 19b5c3ee (cdmlib): Revert "Use only aggregated taxon descriptions for key generation"
- This reverts commit d6567bcdd0ad9fc7768b7ab85be7f09386c05c6b.
- 10:10 AM bug #8494: Better ABCD Preferences Page
- now the Unit ID mapping is a combo box and the dna provider is a combo box containing the providers defined in the pr...
- 09:34 AM Revision d2389430 (cdmlib): ref #8450 Load supported categorical states in service layer
- 09:32 AM Revision 1d424e89 (taxeditor): ref #8450 Load supported categorical states in service layer
- 09:14 AM Revision 7b1740fe (cdmlib): ref #8489: PreferencePredicate update
- 08:46 AM Revision d9a1b833 (cdmlib): ref #8450 Delete association taxon description when deleting specimen
- 06:46 AM Revision 34c65e31 (taxeditor): Set taxonomic scope for generated polytomous key
- 06:46 AM Revision 40f360dd (taxeditor): ref #8539 Update local data set after aggregation
- 06:46 AM Revision c1bf973e (taxeditor): ref #8539 Update local data set after adding specimen
- 06:46 AM Revision ddb0eef3 (taxeditor): ref #8539 Add specimens to matrix as long running task
- 06:46 AM Revision c0ad6a65 (taxeditor): Fix potential NPE
- 06:46 AM Revision 656fdfa3 (taxeditor): Fix potential NPE
- 06:45 AM Revision 92044c86 (cdmlib): Add missing classes to PermissonClass
- 06:45 AM Revision d6567bcd (cdmlib): Use only aggregated taxon descriptions for key generation
- 06:45 AM Revision ef0587b0 (cdmlib): ref #8539 Set data set for aggregation
- 06:45 AM Revision c67a9006 (cdmlib): Fix potential NPE
- 06:45 AM Revision bbd7e287 (cdmlib): ref #8539 Add specimens to matrix as long running task
09/13/2019
- 02:10 PM Revision 85c6cfb6 (taxeditor): ref #8488: adapt all term related preferences, abcd preference page
- 11:22 AM Revision c9ac7f0d (taxeditor): ref #8489: adapt commonname named area voc selection to other voc preferences
- 11:07 AM Revision e7cdc2fb (taxeditor): ref #8385: better handling of distr preferences and term related preferences
- 11:04 AM Revision e1be2e3b (taxeditor): code cleaning
- 11:02 AM Revision b6ea6bbc (cdmlib): ref #8385: methods for better voc selection pref pages
- 10:03 AM Revision 1805001b (taxeditor): adaptions to changes in PreferencesUtil
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