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From 06/02/2021 to 07/01/2021

07/01/2021

05:46 PM Revision 9a34ef6a (taxeditor): ref #9680: add collector titleCache to result of collector search ...
Katja Luther
05:41 PM Revision 52bb6bd1 (cdmlib): ref #9680: adapt searches to search also for collector title cache - ...
Katja Luther
04:22 PM Revision 960c17a3 (taxeditor): some more enable/disable elements issues
Katja Luther
04:12 PM Revision 33b4fa95 (cdmlib): ref #9646: second name of relation should be in italics, too
Katja Luther
03:58 PM bug #9688: Make disabled fields copyable
I guess this is for review. Andreas Müller
02:52 PM bug #9688 (Resolved): Make disabled fields copyable
Applied in changeset commit:taxeditor|20e64571d5a2eb538996e867b9894f04360e7f95. Katja Luther
01:34 PM bug #9688 (Feedback): Make disabled fields copyable
Now an unprotected toggleable field can be edited. I tested with unprotected collector title of a team. But same resu... Andreas Müller
12:13 PM bug #9688: Make disabled fields copyable
This is fixed, please review. Katja Luther
12:12 PM bug #9688 (Resolved): Make disabled fields copyable
Applied in changeset commit:taxeditor|5953dccec12018da410a14fca6d0d37c30822dc8. Katja Luther
10:32 AM bug #9688: Make disabled fields copyable
Andreas Müller wrote:
> Copy from #9287:
>
> AM:
>
> For toggleable they still set the dirty flag (tested on P...
Katja Luther
10:02 AM bug #9688 (Feedback): Make disabled fields copyable
Copy from #9287:
AM:
For toggleable they still set the dirty flag (tested on Person details view with bulk edit...
Andreas Müller
03:56 PM bug #9634 (Closed): Update AgentBase and DescriptiveDataSet titleCache length where needed
I did run the "find open issue" statement on edit-test and edit-integration and could not find any open issues except... Andreas Müller
03:29 PM task #9679: Formatter and update script for SpecimenOrObservationBase short cache
Once this is implemented we should add #5951 to current milestone. Andreas Müller
03:28 PM task #9678 (Closed): Remove Derived- and FieldUnitFacadeCacheStrategies
I think we can close this ticket now. Also the failing test in dataportal is fixed now (mediaspecimen are shown there... Andreas Müller
03:23 PM feature request #5575 (Closed): DNA Sample requires CacheStrategy
Not sure if this is already fully fixed but it needs to be adapted/tested anyway once we unify DnaSample with Derived... Andreas Müller
03:01 PM Revision 61c33dfd (cdmlib): ref #9683 adapt method name and javadoc
Andreas Müller
02:57 PM bug #9683 (Feedback): Auto-initialize root bean
I finally decided to rename the methods (in service and persistence) to loadWithoutInitializing as this is semantical... Andreas Müller
02:54 PM Revision 20e64571 (taxeditor): fix #9688: Fix disabled toggleable text field
Katja Luther
02:40 PM bug #9663 (Closed): Remove additional text from media title
Works as expected and removing the file suffix is another good feature.
Only there was 1 test that was adapted in ...
Andreas Müller
02:37 PM Revision 38d5ecb8 (cdmlib): ref #9663 adapt test to test for removing the suffix (jpg and &mo=file)
Andreas Müller
02:00 PM Revision c2591037 (taxeditor): ref #9690: show message when selection of bulk editor is not avail...
Katja Luther
01:59 PM Revision ccae8112 (taxeditor): ref #9690: show message when selection of bulk editor is not avail...
Katja Luther
01:50 PM bug #9690: Exception when editing name supplemental data in taxon bulk editor
Andreas Müller wrote:
> Now I get
>
>
> when I try to add a name identifier within the bulkeditor for taxa (b...
Katja Luther
01:16 PM bug #9690: Exception when editing name supplemental data in taxon bulk editor
Except for the above exception the bug seems to be fixed now. Andreas Müller
01:15 PM bug #9690 (Feedback): Exception when editing name supplemental data in taxon bulk editor
Now I get
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/common.service
la...
Andreas Müller
01:31 PM feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same f...
A final minor issue. Can we use a grey which is a bit more light? Currently, at least on my screen, it is difficult t... Andreas Müller
01:24 PM feature request #7309 (Closed): Implement collectorTitle and collectorTitleCache and the same for...
Works as expected now Andreas Müller
12:48 PM bug #9373 (Closed): In specimen details view used within specimen tree editor titleCache field is...
works as expected Andreas Müller
12:33 PM Revision 257a82c2 (taxeditor): ref #9337: allow d&d from character voc -> tree and add tree image
Katja Luther
12:13 PM Revision 5953dcce (taxeditor): fix #9688: Adapt toggleable text field to textWithLabel to avoid c...
Katja Luther
10:01 AM feature request #9287 (Closed): Show term details in details view of term tree editor
As there is a followup ticket for the general "copyable" issue we can close this ticket and move discussion on "copya... Andreas Müller
10:00 AM feature request #9287: Show term details in details view of term tree editor
Andreas Müller wrote:
> It works as expected for the fields in the term tree details view (which are not toggleable)...
Katja Luther
09:56 AM feature request #9287: Show term details in details view of term tree editor
It works as expected for the fields in the term tree details view (which are not toggleable).
For toggleable they ...
Andreas Müller
09:52 AM Revision a4df60bc (cdmlib): ref #9680: adapt searches to search also for collector title cache - ...
Katja Luther
09:42 AM feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenc...
Searching for a collector (from FieldUnit details view) does also not yet give a result for searching on collector ti... Andreas Müller
09:33 AM feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenc...
The search result in search dialog does not yet include the collector title cache
![](picture865-1.png)
This is...
Andreas Müller
09:30 AM feature request #9680 (Feedback): Show collectorTitleCache and protectedCollectorTitleCache+ prot...
Search in bulk editor does not yet include search on collector titlecache Andreas Müller
09:34 AM Revision 4b96de2c (cdmlib): ref #9680: adapt searches to search also for collector title cache
Katja Luther

06/30/2021

10:01 PM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
WGB:
Non-indications without giving the exact reason:
I would also [like] to have a simple directed name relation...
Andreas Müller
09:52 PM feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
Hallo,
ich dachte, ich hätte hierzu schon geschrieben, aber ich finde die Mail nicht (und im Release ist’s auch nich...
Andreas Müller
09:14 PM bug #6468 (Worksforme): sec and sensu not correct if misapplied name relationship reference exists
This to me seems to be fixed with the implementation on formatter for taxon relationships (misapplications and pro pa... Andreas Müller
09:11 PM task #9528 (Worksforme): synonymy: missplied names sensu with short authorship string
This to me seems to be fixed with the latest changes on short citation formatting in cdmlib.
The citation now look...
Andreas Müller
06:21 PM bug #9691 (New): Implement aggregates correctly for zoological names
Zoology handles aggregates different to botany as can be seen in the ICZN: https://code.iczn.org/chapter-2-the-number... Andreas Müller
03:09 PM bug #9683 (Resolved): Auto-initialize root bean
Ok, thank you for the explanation. I would prefer having the same method names in the DAP and service layer. We can k... Andreas Kohlbecker
02:42 PM task #8865: more external-links to be implemented
Now that the external links have been re-implemented new link templates can be added dynamically.
Hence the links su...
Andreas Kohlbecker
02:22 PM feature request #7309 (Resolved): Implement collectorTitle and collectorTitleCache and the same f...
Andreas Müller wrote:
> It seems to work now.
>
> However, there is another problem now. The protect button is di...
Katja Luther
02:20 PM bug #9373 (Resolved): In specimen details view used within specimen tree editor titleCache field ...
this is fixed, please review. Katja Luther
02:14 PM Revision 8a134bb2 (taxeditor): fix #9690: handle changes of name supplemental data in taxon bulk ...
Katja Luther
02:14 PM bug #9690: Exception when editing name supplemental data in taxon bulk editor
this should be fixed, please review. Katja Luther
02:13 PM bug #9690 (Resolved): Exception when editing name supplemental data in taxon bulk editor
Applied in changeset commit:taxeditor|8a134bb221ba7b33eaefc95e7ce4b5e8e32cf623. Katja Luther
02:11 PM bug #9690 (Closed): Exception when editing name supplemental data in taxon bulk editor
mail WB:
Hallo,
aus dem Taxon Bulk Editor (Taxon? – Ist eigentlich ein Synonym) – Name Suppl. Data – Eingabe WFO-...
Katja Luther
01:47 PM feature request #980 (Closed): Links to relevant external website(s) in taxon pages
PubMed added to the defaults of external links, and all open tasks related to this ticket are solved now.
Andreas Kohlbecker
01:44 PM Revision a67bf94e (cdm-dataportal): ref #980 adding PubMed to default ext_links
Andreas Kohlbecker
01:43 PM Revision 9169e636 (cdm-dataportal): ref #9659 deleting old code file
Andreas Kohlbecker
01:27 PM task #9666 (Closed): cdm_tokens module
test will be implemented for this module and for ext_inks commonly #9659 Andreas Kohlbecker
01:27 PM task #9659: External Links Module reimplemented for flexible configuration
tests will be implemented #9659 Andreas Kohlbecker
01:26 PM task #9689 (New): External Links Module: Tests implemented
These tests will also cover the cdm_tokens module.
Creating a Unit test for both modules is very complicated due t...
Andreas Kohlbecker
01:20 PM bug #3370 (Duplicate): ExternalLinks [ext-links]: External services: GBIF: add infraspecific taxa
has been solved by #9659, closing as duplicate Andreas Kohlbecker
11:40 AM bug #9390 (In Progress): Remaining issues for set secundum dialog
Katja Luther
11:04 AM bug #9688 (Resolved): Make disabled fields copyable
please review. Katja Luther
09:59 AM bug #9688 (Closed): Make disabled fields copyable
from #9287:
There is only one final issue which is valid for all disabled fields. Is it possible to generally make...
Katja Luther
11:01 AM Revision 44030a57 (cdmlib): smaller changes in CdmLIghtExport
Katja Luther
11:01 AM Revision ffc9d0bd (cdmlib): ref #9680:adapt seach methods to search for collectortitlecache
Katja Luther
11:01 AM Revision bba2caf5 (cdmlib): ref #9680:adapt seach methods to search for collectortitlecache, also...
Katja Luther
11:01 AM feature request #9680 (Resolved): Show collectorTitleCache and protectedCollectorTitleCache+ prot...
The Bulkeditor shows the nomenclatural title and collector title. The search is adapted for all searches. Please review. Katja Luther
10:48 AM Revision 32744832 (taxeditor): remove some not finished code
Katja Luther
10:24 AM Revision edff7345 (taxeditor): ref #9680: show abbrev titlecache/protected and collector titlecac...
Katja Luther
10:02 AM feature request #9287: Show term details in details view of term tree editor
Andreas Müller wrote:
> Works as expected now and we can close the ticket.
>
> There is only one final issue whic...
Katja Luther
10:01 AM Revision 8fbdff7b (taxeditor): ref #9688: make disabled fields copyable
Katja Luther
09:48 AM Revision ec4a9eb1 (taxeditor): ref #9287: adapt all toggleable text fields to enableCache
Katja Luther

06/29/2021

11:04 PM Revision ed5871af (cdmlib): ref #4311 add initials + family default for collectorTitleCache
Andreas Müller
11:02 PM Revision 27d743af (cdmlib): cleanup
Andreas Müller
10:41 PM feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same f...
Andreas Müller
10:29 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomencla...
It seems to work now.
However, there is another problem now. The protect button is disabled for all titleCache fie...
Andreas Müller
10:30 PM feature request #9287: Show term details in details view of term tree editor
See also #7309#note-19 which is maybe related to this ticket. Andreas Müller
07:06 PM feature request #9287 (Feedback): Show term details in details view of term tree editor
Works as expected now and we can close the ticket.
There is only one final issue which is valid for all disabled f...
Andreas Müller
11:49 AM feature request #9287 (Resolved): Show term details in details view of term tree editor
Andreas Müller wrote:
> The buttons for multi-language editing are still enabled. So it is possble to remove a descr...
Katja Luther
10:08 PM Revision f9d65b70 (cdmlib): ref #9664 , ref #4311 fix cache handling for collectorTitle and nomen...
Andreas Müller
09:30 PM Revision c1e0cb15 (cdmlib): ref #9683. ref #9664 fix tests in AgentServiceImplTest
Andreas Müller
09:09 PM Revision 5861cfb5 (cdmlib): ref #9664 , ref #4311 adapt autoInitializer
Andreas Müller
09:07 PM Revision c26ab6e0 (cdmlib): cleanup
Andreas Müller
06:59 PM feature request #9647 (Closed): After deduplication the remaining record should get the focus in ...
I also could not reproduce this anymore. So I think we can close this ticket and watch the deduplication in production. Andreas Müller
06:50 PM task #6714 (Closed): Create 001-cdm.h2.sql automatically
Andreas Müller
06:41 PM task #6714 (Resolved): Create 001-cdm.h2.sql automatically
Andreas Müller
06:26 PM Revision ae8047fb (cdmlib): ref #6714 fix ddl creation with template
Andreas Müller
04:57 PM Revision 828e0012 (taxeditor): ref #9373: adapt detail elements to enable/disable possibility of ...
Katja Luther
04:06 PM Revision 6c5e41a1 (cdmlib): cleanup
Andreas Müller
12:46 PM feature request #9687 (New): SpecimenTypeDesignationWorkingsetEditor: Option to create new type s...
UseCase: an invalid name has type information (entered into the SpecimenTypeDesignationWorkingsetEditor in Vaadin.
...
Wolf-Henning Kusber
11:57 AM bug #9686 (New): nomenclatural status missing in
see
https://www.phycobank.org/cdm_dataportal/registration-search/filter?identifier=&taxon_name=Encyonema+chebaling...
Andreas Kohlbecker
11:47 AM feature request #9685: add separator between rule applied and code edition
fixed. please review after the relase. Andreas Kohlbecker
11:46 AM feature request #9685 (Resolved): add separator between rule applied and code edition
Applied in changeset commit:cdm-dataportal|8242168c0f18d1c516cc5e328c47f9daef8c66fa. Andreas Kohlbecker
11:34 AM feature request #9685 (Resolved): add separator between rule applied and code edition
https://www.phycobank.org/cdm_dataportal/registration?identifier=http://phycobank.org/102790
Art. 40.7; Turland
Andreas Kohlbecker
11:46 AM Revision 8242168c (cdm-dataportal): fix #9685 adding semicolon as separator between rule conside...
Andreas Kohlbecker
11:19 AM Revision 3a553a43 (taxeditor): ref #9287: fix NPE when multilanguage is disabled
Katja Luther
10:23 AM Revision c9e78864 (taxeditor): ref #9287: disable translation elements of term - continue
Katja Luther
10:21 AM task #9659 (Closed): External Links Module reimplemented for flexible configuration
Andreas Kohlbecker
10:16 AM Revision abb2570a (cdm-dataportal): ref #9659 automatically enabling cdm_tokens via update function
Andreas Kohlbecker
10:13 AM Revision 8ee0429a (taxeditor): ref #9287: disable translation elements of term
Katja Luther

06/28/2021

05:31 PM Revision 4bafd675 (cdmlib): ref #9664 , ref #4311 fix updateCaches in Person
Andreas Müller
04:49 PM bug #8364 (Closed): ext-links module: problems
done Andreas Kohlbecker
04:06 PM bug #8364: ext-links module: problems
I am unsure if we really should add a link to a specific release of CoL as CoL meanwhile has switched to an monthly r... Andreas Kohlbecker
02:31 PM bug #8364 (In Progress): ext-links module: problems
Andreas Kohlbecker
04:48 PM Revision 4dbe55db (cdm-dataportal): ref #9659 sensibly ordering ext_links defaults and defining w...
Andreas Kohlbecker
04:28 PM Revision 6f3e6f62 (cdm-dataportal): ref #8364 adding col to external links defaults
Andreas Kohlbecker
04:20 PM feature request #9647: After deduplication the remaining record should get the focus in bulk editor
Andreas Müller wrote:
> This generally works as expected but in 20-30% of the cases after setting the focus it got l...
Katja Luther
04:16 PM feature request #7309 (Resolved): Implement collectorTitle and collectorTitleCache and the same f...
Katja Luther
04:15 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomencla...
Andreas Müller wrote:
> >For Person the result of the collectorTitleCache field should only be displayed but not be ...
Katja Luther
04:15 PM Revision 9ef89740 (taxeditor): ref #7309: collector and nomenclatural title fields show cache if ...
Katja Luther
04:09 PM Revision c9e207d1 (cdmlib): fix updateCaches - do not set nomenclaturalTitle but nomenclaturalTit...
Katja Luther
03:57 PM Revision 54be0639 (cdm-dataportal): ref #8364 renaming category to 'Classification/Nomenclature' ...
Andreas Kohlbecker
03:55 PM Revision cc1f61ef (cdmlib): ref #9664 fix test data
Andreas Müller
03:45 PM Revision 491f1f91 (cdmlib): ref #4311 fix collectorTitleCache handling in Team an in person2Team
Andreas Müller
03:43 PM Revision 1ba6c1ad (cdmlib): ref #9664 fix nomTitleCache test for fully empty person2Team
Andreas Müller
03:40 PM Revision 346eb1a6 (cdmlib): remove isGeneratingTitleCache which is not in use anymore
Andreas Müller
03:08 PM bug #9683: Auto-initialize root bean
My comment was about the method in service. Maybe in dao it is slightly different as it is always used within a sessi... Andreas Müller
03:06 PM bug #9683: Auto-initialize root bean
Andreas Kohlbecker wrote:
> I think the new method, which by the way is only used for test classes, is irritating:
...
Andreas Müller
02:10 PM bug #9683 (Feedback): Auto-initialize root bean
I think the new method, which by the way is only used for test classes, is irritating:
~~~
public T loadProxy(int...
Andreas Kohlbecker
09:39 AM bug #9683 (Resolved): Auto-initialize root bean
Applied in changeset commit:cdmlib|5348613baa59038220d4efd1e4a851e3ccdb6c58. Andreas Müller
09:35 AM bug #9683 (Closed): Auto-initialize root bean
Currently only related objects are auto-initialized by the AbstractBean.beanAutoInitializers . The root bean itself i... Andreas Müller
02:32 PM Revision 9477cfe7 (cdm-dataportal): ref #8364 adding europeana, morphbank and wfo do external lin...
Andreas Kohlbecker
01:27 PM task #9659 (Resolved): External Links Module reimplemented for flexible configuration
this should be fully solved now Andreas Kohlbecker
12:16 PM Revision 322154af (cdmlib): cleanup
Andreas Müller
12:09 PM Revision 47125f72 (cdmlib): ref #9684 updating CdmBaseType constant names to latest model
Andreas Kohlbecker
12:06 PM Revision cb9f933b (cdmlib): ref #9684 adding more basetypes to CdmBaseType
Andreas Kohlbecker
11:29 AM bug #9684 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon() - [UPDATE] not perm...

e.e.c.r.controller.TaxonController - rootUnitDTOs()
/cdmserver/integration_reference/portal/taxon/d245083e-3bda...
Andreas Kohlbecker
11:28 AM Revision bcbe5633 (cdmlib): ref #9683 add loadProxy method to services and adapt test to work wit...
Andreas Müller
11:25 AM Revision f4b956d8 (cdmlib): ref #9664 remove setting person setNomenclaturalTitle during cache up...
Andreas Müller
10:35 AM Revision b8e3fd47 (cdmlib): cleanup
Andreas Müller
09:43 AM task #9678 (Resolved): Remove Derived- and FieldUnitFacadeCacheStrategies
The failing test in vaadin is related to incorrect autoinitialization (#9683) which is fixed now. So this ticket shou... Andreas Müller
09:39 AM Revision 5348613b (cdmlib): fix #9683 autoinitialize root bean
Andreas Müller
09:38 AM Revision 3606bda3 (cdmlib): cleanup
Andreas Müller

06/26/2021

09:25 AM Revision 9d97647a (cdmlib): ref #9433 fix incorrect handling for MAN without sec/sensu reference
Andreas Müller

06/25/2021

07:58 PM bug #9665 (Closed): Filter out property change event for created and updated and cacheStrategy
Andreas Müller
07:44 PM feature request #9682 (New): Implement source for external authors
via webservice to ipni or on something like CDM term server.
Good sources for (botanical) persons are:
Inde...
Andreas Müller
07:41 PM feature request #9664 (Resolved): Add nomenclaturalTitleCache to TeamOrPersonBase
Andreas Müller
07:37 PM feature request #4311 (Resolved): Improve person representation in CDM
Collector titel update script and explicit nomenclaturalTitleCache including protected have been implemented.
Open...
Andreas Müller
07:35 PM task #9681 (New): Open issues for improving person representation
copied from #4311
* usage of "suffix" (correct label??) in "Taxonname reference author" (discuss with NK)
* full ...
Andreas Müller
07:08 PM bug #9651 (Closed): After creating a new MAN the details view is filled with other MAN
Seem to work as expected (but not sure if I could reproduce it correctly) Andreas Müller
07:01 PM feature request #9572 (Feedback): After creating a new term tree set the focus to the new tree
Works as expected so we can close the ticket.
I only wonder if it can be further improved. Currently you have to d...
Andreas Müller
06:55 PM feature request #9647 (Feedback): After deduplication the remaining record should get the focus i...
This generally works as expected but in 20-30% of the cases after setting the focus it got lost immediately again tho... Andreas Müller
06:47 PM bug #9654 (Closed): Deleting a synonym which has no name throws exception
Works as expected Andreas Müller
06:40 PM Revision f3fd528a (cdmlib): cleanup
Andreas Müller
06:35 PM feature request #9655 (Closed): When adding a new team member open search dialogue immediately
Works as expected. ... and saves time Andreas Müller
06:32 PM bug #9373: In specimen details view used within specimen tree editor titleCache field is not enab...
How to reproduce:
* Create a specimen with a protected titleCache
* Open specimen tree editor and search for the ...
Andreas Müller
06:23 PM feature request #7178 (New): implement collectorTitleCache in TeamOrPersonField (vaadin)
The collector title is now implemented and available so the according field in vaadin editor can be implemented, too. Andreas Müller
06:20 PM feature request #7178: implement collectorTitleCache in TeamOrPersonField (vaadin)
Andreas Kohlbecker wrote:
> Aber bei diesem Ticket geht es um das vaadin UI nicht um die titleCache-Generierung in d...
Andreas Müller
06:17 PM feature request #9680 (Closed): Show collectorTitleCache and protectedCollectorTitleCache+ protec...
... and extend search on the collectorTitleCache field.
Also the collectorTitleCache should be included in search ...
Andreas Müller
06:12 PM feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same f...
>For Person the result of the collectorTitleCache field should only be displayed but not be editable.
This still s...
Andreas Müller
02:39 PM feature request #7309 (Resolved): Implement collectorTitle and collectorTitleCache and the same f...
This should be implemented now, please review. Katja Luther
06:05 PM feature request #9287 (Feedback): Show term details in details view of term tree editor
The buttons for multi-language editing are still enabled. So it is possble to remove a description for a given langua... Andreas Müller
05:51 PM task #9678 (In Progress): Remove Derived- and FieldUnitFacadeCacheStrategies
Mostly implemented but there is still a test in vaadin that fails due to a lazy initialization exception when calling... Andreas Müller
09:52 AM task #9678 (Closed): Remove Derived- and FieldUnitFacadeCacheStrategies
Cache strategies for FieldUnits and DerivedUnits are currently using the DerivedUnitFacadeCacheStrategy or DerivedUni... Andreas Müller
02:30 PM Revision e033750b (taxeditor): ref #7309: add collectorTitle/titleCache to editor - continue
Katja Luther
02:25 PM Revision 4ff8bf0c (taxeditor): some changes in reference selection dialog to add a list of presel...
Katja Luther
02:21 PM Revision 8f1f6888 (taxeditor): ref #7309: add collectorTitle/titleCache to editor
Katja Luther
12:52 PM Revision 603e7617 (cdm-vaadin): remove preliminary ignore from vaadin test
Andreas Müller
12:51 PM Revision 3750d994 (cdm-vaadin): preliminary ignore vaadin test
Andreas Müller
12:44 PM Revision 160332b0 (cdm-vaadin): fix failing test test03_deleteTypeDesignationTest
Andreas Müller
12:16 PM Revision 64a847c9 (cdm-vaadin): ref #4311 adapt vadin to collectorTitleCache
Andreas Müller
12:15 PM Revision fe720b6e (cdm-vaadin): ref #9664 adapt vaadin to nomenclaturalTitleCache
Andreas Müller
12:15 PM Revision d32ecdf2 (cdm-vaadin): update test DB for vaadin to 5.25
Andreas Müller
12:14 PM Revision f18466c9 (cdm-vaadin): cleanup
Andreas Müller
12:06 PM Revision 1f48ecbf (taxeditor): cleanup
Andreas Müller
12:06 PM Revision c03f37d8 (taxeditor): update test DB for taxeditor to 5.25
Andreas Müller
12:01 PM Revision f016f939 (cdmlib): update CdmCache and test DB for cdmlib to 5.25
Andreas Müller
10:32 AM bug #8517 (Closed): SpecimenOrObservation: data from protected titleCache missig in portal pages
The above links work as expected so I think we can close this ticket. Please reopen if you think there is something l... Andreas Müller
10:21 AM Revision bd4c6676 (cdmlib): ref #9678 implement cache strategies for field unit and derived unti ...
Andreas Müller
10:21 AM Revision c189e0fb (cdmlib): cleanup and return empty Set (not null) for getOriginals
Andreas Müller
10:21 AM Revision 571c7dcc (cdmlib): add Identifier table to test data schema
Andreas Müller
10:21 AM Revision da9b5ae7 (cdmlib): cleanup
Andreas Müller
10:21 AM Revision c4b1960b (cdmlib): move SingleReadFormatter and SequenceFormatter to molecular package
Andreas Müller
10:21 AM Revision 21dd08ab (cdmlib): ref #4311 Increase size of collectorTitleCache to 800 in update script
Andreas Müller
10:21 AM Revision b69c47b9 (cdmlib): ref #9634 Increase size for AgentBase.titleCache to 800
Andreas Müller
10:21 AM Revision 30db901d (cdmlib): ref #9664 , ref #4311 Add nomenclaturalTitleCache to TeamOrPersonBase...
Andreas Müller
10:21 AM Revision ce5bca3b (cdmlib): trim family name for titleCache
Andreas Müller
10:21 AM Revision 17b1eb1a (cdmlib): fix potential (but very unlikely) NPE in TaxonName.getAuthorshipCache
Andreas Müller
10:21 AM Revision 466620b1 (cdmlib): fix #9665 filter propertyChange events for created and updated
Andreas Müller
10:21 AM Revision 1cbb5d95 (cdmlib): cleanup
Andreas Müller
10:21 AM Revision 9f6a56c9 (cdmlib): ref #9664 first implementation for TeamOrPersonBase.nomenclaturalTitl...
Andreas Müller
10:21 AM Revision 66665714 (cdmlib): cleanup
Andreas Müller
10:21 AM Revision 71b9b632 (cdmlib): ref #4311 first implementation for TeamOrPersonBase.collectorTitle
Andreas Müller
10:21 AM Revision 6a912e4c (cdmlib): adapt version and CdmUpdater to v5.25
Andreas Müller
10:21 AM Revision 773b7fd0 (cdmlib): cleanup
Andreas Müller
10:11 AM task #9679 (New): Formatter and update script for SpecimenOrObservationBase short cache
... or "identityCache".
Also think about deviding titleCache in titleCache and fullTitle(Cache) where only the lat...
Andreas Müller

06/24/2021

10:28 AM Revision 2924a377 (cdmlib): accept only abcd schema in biocaseQuery
Katja Luther
10:11 AM Revision 4e8d61cc (cdmlib): adapt test to fixed short citation
Katja Luther

06/23/2021

04:02 PM Revision 98a8ae95 (cdmlib): use shortCitation with brackets for sec references
Katja Luther

06/22/2021

07:22 PM feature request #9677: Implement recombine operation
NaK:
ja, genau, es sind Neukombinationen aufgrund neue taxonomische Erkenntnisse, oder einer phylogenetischen Stud...
Andreas Müller
07:19 PM feature request #9677 (New): Implement recombine operation
Currently we have only move and swap operations available for implementing a recombination of a taxon.
However, us...
Andreas Müller
10:10 AM bug #9676: Separators in nomenclatural act representations between identifier and date
Henning wrote:
Im Prinzip wäre es in der Ansicht, die Andreas M. gezeigt hat sinnvoll, mit Komma jeweils zu trennen.
Andreas Kohlbecker
10:09 AM bug #9676 (New): Separators in nomenclatural act representations between identifier and date
Würde es nicht Sinn machen, den Identifier und das Registrierungsdatum auch mit einem Separator zu versehen. Derzeit ... Andreas Kohlbecker

06/21/2021

04:03 PM Revision 375e3109 (cdm-dataportal): ref #9637 adapting dataportal to renamed query params pageNum...
Andreas Kohlbecker
03:54 PM Revision a245f810 (cdmlib): ref #9637 renaming pageNumber -> pageIndex in controllers
Andreas Kohlbecker
08:08 AM Revision b885ae98 (cdmlib): add new CharacterLabelBuilder
Katja Luther

06/18/2021

12:41 PM Revision ecf4068f (taxeditor): ref #9337: characterLabelProvider needs to be adapted, too
Katja Luther
12:30 PM feature request #8238: Allow interoperability between term trees
The interoperability should be implemented in cdmlib.
addChild() should allow to add a term that is subtype of the...
Katja Luther
10:48 AM Revision 9e8ecb58 (taxeditor): ref #9337: allow adding characters on selected node
Katja Luther
09:27 AM feature request #9572 (Resolved): After creating a new term tree set the focus to the new tree
Now also the focus is set to the titleCache, please review. Katja Luther
09:27 AM Revision 46e677d2 (taxeditor): ref #9572: set focus to titleCache of term tree details
Katja Luther
09:04 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
Discussion how to handle Secundum Reference:
mail AM:
noch eine bisschen detaillierter Überlegung zu der Secund...
Katja Luther

06/17/2021

03:14 PM Revision eaa38a1c (taxeditor): ref #9572: setfocus to newly created term tree
Katja Luther
03:14 PM feature request #9572 (In Progress): After creating a new term tree set the focus to the new tree
After creating a new tree the focus is set to this tree, the focus on titlecache is still missing. Katja Luther
03:04 PM Revision 070a27a4 (taxeditor): ref #9337: open in... vocabulary
Katja Luther

06/16/2021

10:17 PM bug #9634 (Resolved): Update AgentBase and DescriptiveDataSet titleCache length where needed
Andreas Müller
05:33 PM task #9650 (In Progress): Update all titleCaches after upgrade of cache strategies and formatters
Andreas Müller
05:03 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions insid...
On the linked site above there is also an unnecessary whitespace before the closing bracket and a full stop after foo... Andreas Müller
04:45 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions insid...
thanks for that hint. Andreas Kohlbecker
03:45 PM feature request #9674: footnote keys for annotations to multilanguageText name descriptions insid...
>Aber das original spelling wird hier nicht mit ausgegeben: as „saglione“ – kann man das einstellen? In CDM-light kom... Andreas Müller
11:07 AM feature request #9674 (Resolved): footnote keys for annotations to multilanguageText name descrip...
Applied in changeset commit:cdm-dataportal|c4dd76b64df4d09297b4335ac55be13e01833734. Andreas Kohlbecker
10:50 AM feature request #9674 (Closed): footnote keys for annotations to multilanguageText name descripti...
Gymnocalycium saglionis (Cels) Britton & Rose, Cactaceae 3: 157. 1922 [Original spelling of epithet should be maintai... Andreas Kohlbecker
03:34 PM bug #9675 (Closed): Person initials should never be empty
Andreas Müller
12:05 PM bug #9675 (Resolved): Person initials should never be empty
Applied in changeset commit:cdmlib|5d058335ab6b9a59fe95c0becec9b4072bb6a0b4. Andreas Müller
12:04 PM bug #9675 (Closed): Person initials should never be empty
but null instead Andreas Müller
02:28 PM Revision 306337ee (cdmlib): cleanup
Andreas Müller
02:28 PM Revision 5643e3ce (cdmlib): fix #9675 handling for empty initials (cont.)
Andreas Müller
02:03 PM Revision e9970345 (cdm-dataportal): ref #9674 footnote keys for annotations to multilanguageText ...
Andreas Kohlbecker
01:07 PM Revision 12addc56 (taxeditor): ref #9337, #9287: show details of term and supplemental data of te...
Katja Luther
01:03 PM Revision 395b1b10 (cdm-dataportal): ref #9666 save access to unset name properties
Andreas Kohlbecker
12:05 PM Revision 5d058335 (cdmlib): fix #9675 handling for empty initials
Andreas Müller
11:12 AM feature request #3223 (New): data portal front end for free text search on occurrences
Andreas Müller wrote:
> Is there a reason why you assigned the ticket to me? (dataportal front-end and freetext se...
Andreas Kohlbecker
11:07 AM feature request #3223: data portal front end for free text search on occurrences
Yes, I think it is a general requirement and not only for AT.
Therefore I move it to unassigned.
Is there a reaso...
Andreas Müller
11:07 AM Revision c4dd76b6 (cdm-dataportal): fix #9674 footnote keys for annotations to multilanguageText ...
Andreas Kohlbecker
10:56 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
Andreas Müller wrote:
> Is this ticket really only about "allowOverride=NULL"? I ask because there is so much additi...
Katja Luther
10:53 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
Is this ticket really only about "allowOverride=NULL"? I ask because there is so much additional information in the d... Andreas Müller
10:52 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
I added a ticket which should try to set the allowOverride to allowNull=false if possible (unfortunately not trival v... Andreas Müller
10:48 AM bug #9672 (In Progress): NPE when CDMPreference contains allowOverride=NULL
Allow override must never be NULL (even if the schema for historical reasons allwos null). Please adapt data in your ... Andreas Müller
10:16 AM bug #9672: NPE when CDMPreference contains allowOverride=NULL
Hier ist der Stacktrace:
~~~
Caused by: java.lang.IllegalArgumentException: Can not set boolean field eu.etaxonom...
Andreas Kohlbecker
08:35 AM bug #9672 (Duplicate): NPE when CDMPreference contains allowOverride=NULL
eu.etaxonomy.cdm.api.service.MediaServiceImpl.readResourceMetadataFiltered(MediaRepresentation representation) throws... Katja Luther
10:51 AM feature request #9287 (Resolved): Show term details in details view of term tree editor
this should be fixed. Please review. Katja Luther
10:50 AM Revision 74ca5142 (taxeditor): ref #9287: show disabled term details in term tree
Katja Luther
10:50 AM task #9673 (New): Remove allowNull from allowOverride
in CdmPreferences, if possible.
Use false (0) instead as default.
Andreas Müller
10:49 AM Revision ee4b4e44 (taxeditor): ref #9287: show disabled term details in term tree
Katja Luther
10:40 AM feature request #9270 (Duplicate): show original spelling on taxon page
Andreas Kohlbecker
10:33 AM Revision 46aa1f81 (cdm-dataportal): ref #9659 improved ext_link block layout with migration of ol...
Andreas Kohlbecker

06/15/2021

05:06 PM bug #9669 (Closed): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of...
Andreas Kohlbecker
03:02 PM bug #9669 (Resolved): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size ...
Applied in changeset commit:cdm-dataportal|ecf46c678ce8626ebe6a945c065c76b7e8819e09. Andreas Kohlbecker
03:01 PM bug #9669 (In Progress): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory si...
Andreas Kohlbecker
02:51 PM bug #9669 (Closed): cdm_dataportal_search_taxon_form_advanced() fails with Allowed memory size of...
~~~
[Tue Jun 15 14:41:08.025031 2021] [php7:notice] [pid 19252] [client 127.0.0.1:53352] PHP Fatal error: Allowed m...
Andreas Kohlbecker
03:33 PM Revision 54a4201c (cdm-dataportal): fix #9669 further improvement of cdm_ws_fetch_all()
Andreas Kohlbecker
03:02 PM Revision ecf46c67 (cdm-dataportal): fix #9669 avoiding infinite loop in cdm_ws_fetch_all()
Andreas Kohlbecker
02:28 PM Revision 4adc4eeb (cdm-dataportal): selenium test for AdvancedSearchForms
Andreas Kohlbecker
02:21 PM Revision 2ae1340d (cdm-dataportal): fixing remamend array key
Andreas Kohlbecker
02:13 PM feature request #3223: data portal front end for free text search on occurrences
This was also required in the campanula project,
As we don't have a specimen search yet, this ticket should conside...
Andreas Kohlbecker
02:12 PM Revision c9e4e6f8 (taxeditor): ref #9668: hotfix for secundum handling when swap syn and accepted...
Katja Luther
01:41 PM task #3241: favicon for algaterra
Henning, please can you decide? Andreas Kohlbecker
01:14 PM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
In general I wonder if it is a good idea to stay with the new implementation of the method. The current problem shows... Andreas Müller
01:09 PM bug #9668 (Feedback): Secundum reference is switched when swap synonym and accepted taxon
I get
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/taxon.service
last r...
Andreas Müller
11:01 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
The hotfix is implemented, please review with nightly. Katja Luther
10:14 AM bug #9668: Secundum reference is switched when swap synonym and accepted taxon
As a workaround the secundum reference is switched in editor for a quick hotfix.
The complete implementation needs...
Katja Luther
09:36 AM bug #9668 (In Progress): Secundum reference is switched when swap synonym and accepted taxon
mail NadjaK:
ich bin gerade auf eine Fehlerquelle gestoßen:

Ich habe Salmonopuntia schickendantzii als neues ...
Katja Luther
12:00 PM Revision 9bf8e8eb (taxeditor): ref #9337: paste does not need save
Katja Luther
10:08 AM Revision 5b77dba4 (taxeditor): ref #9668: hotfix for secundum handling when swap syn and accepted
Katja Luther
10:00 AM Revision 67b94f1a (taxeditor): Updated version in pom / project files to taxeditor version : 5.24...
jenkins
09:40 AM Revision 63004250 (taxeditor): ref #9668: hotfix for secundum handling when swap syn and accepted
Katja Luther
08:30 AM Revision aad1e999 (cdm-dataportal): adapting portal to modified media specimen cache
Andreas Kohlbecker

06/14/2021

05:47 PM Revision a1edfba5 (cdm-dataportal): ref #9659 more compact layout for ext_links by html5 labels
Andreas Kohlbecker
05:40 PM Revision 0501ab2c (cdm-dataportal): ref #9659 updating existing ext_link block configurations
Andreas Kohlbecker
05:25 PM Revision 09c59988 (cdm-dataportal): ref #9666 bug fix in cdm_tokens
Andreas Kohlbecker
05:11 PM Revision 89aa0117 (cdm-dataportal): ref #9659 field 'glue' removed from admin pages
Andreas Kohlbecker
04:46 PM Revision 0a311d85 (cdm-dataportal): ref #9659 all ext_links templates with cdm_tokens, glue removed
Andreas Kohlbecker
04:41 PM Revision 6325712d (cdm-dataportal): ref #9659 updating install script for ext_links using cdm_tokens
Andreas Kohlbecker
04:39 PM Revision 580cd817 (cdm-dataportal): ref #9666 more cdm:taxon_name tokens
Andreas Kohlbecker
04:11 PM Revision 5e971c04 (cdmlib): ref #9666 adding is{rankLevel} to term serialization for cdm_tokens
Andreas Kohlbecker

06/12/2021

11:53 AM bug #9649 (Resolved): Specimens sometimes have empty titleCache instead of class<UUID>
Set to resolved in case #9665 fixed the issue. Andreas Müller
11:48 AM task #9030 (Closed): Import flowering periods for Cyprus
Import did run. Some manual adaptations needed to be done by RH:
~~~
Taxon uuid has incorrect format. Taxon could...
Andreas Müller
11:46 AM task #9030 (Resolved): Import flowering periods for Cyprus
Applied in changeset commit:cdmlib|43f0d97d9fbc3760be1fbd0d320f3cea94d67706. Andreas Müller
11:45 AM Revision ae8f9c66 (cdmlib): minor
Andreas Müller
11:45 AM Revision 43f0d97d (cdmlib): fix #9030 add reverse order pattern for monthPattern with extreme values
Andreas Müller
11:42 AM feature request #9667 (New): Printversion for Keys
RH:
Schlüsselsicherung: Gibt es eigentlich eine irgendwie geartete Möglichkeit alle Zypern-Gattungs-Schlüssel in e...
Andreas Müller

06/11/2021

12:17 AM feature request #9664 (In Progress): Add nomenclaturalTitleCache to TeamOrPersonBase
Andreas Müller
12:16 AM Revision 15365ed8 (cdmlib-apps): ref #9664 change nomTitle to nomTitleCache in cdmlib-app
Andreas Müller
12:13 AM Revision 74a337cc (cdmlib-apps): ref #9030 add Cyprus Flowering period activator
Andreas Müller
06:16 PM Revision d2d48638 (cdm-dataportal): ref #9659 using cdm_tokens in ext_links - fist step
Andreas Kohlbecker
06:15 PM Revision 93f61a88 (cdm-dataportal): cleaning up
Andreas Kohlbecker
05:40 PM Revision ca1ab005 (cdm-dataportal): ref #9666 cdm_tokens module implemented
Andreas Kohlbecker
05:00 PM Revision 1702d40c (cdm-dataportal): ref #9666 get_current_name_uuid() in cdm_dataportal
Andreas Kohlbecker
04:59 PM task #9666 (Closed): cdm_tokens module
This module will provide Drupal tokens:
~~~
cdm:taxon_name
cdm:taxon_name:uninomial
cdm:taxon_name:epithet
~~~...
Andreas Kohlbecker
02:29 PM feature request #3223 (Feedback): data portal front end for free text search on occurrences
Is this ticket still needed for general use? Andreas Müller
02:25 PM task #3241 (Feedback): favicon for algaterra
Andreas Müller
02:25 PM task #3241: favicon for algaterra
Is this ticket stil needed? Andreas Müller
02:14 PM task #9251: Specimenview path: better representation of RecordBasis
AT migration was not the correct target version. Andreas Müller
01:49 PM Revision 5c5f760a (cdm-dataportal): ref #9659 ext_links update function to create scheme and migr...
Andreas Kohlbecker
01:35 PM bug #9649 (In Progress): Specimens sometimes have empty titleCache instead of class<UUID>
Maybe fixed by #9665 . Need to check after release if this still happens. Andreas Müller
01:24 PM bug #9665 (Resolved): Filter out property change event for created and updated and cacheStrategy
fixed, will be merged into develop with uml 5.25 Andreas Müller
01:20 PM bug #9665 (Closed): Filter out property change event for created and updated and cacheStrategy
Currently these events (created and updated) are fired by the CdmPreDataChange Listener which results in setting titl... Andreas Müller
01:17 PM Revision f545e3c5 (cdm-dataportal): ref #9659 ext_links enable/disable bug fix
Andreas Kohlbecker
01:13 PM bug #7817 (Duplicate): Team caches should not show '& al.'
duplicates #9326, #9464 and #9624 Andreas Müller
12:02 PM Revision 5fcd18f5 (cdm-dataportal): ref #9659 ext_links order configurable
Andreas Kohlbecker
11:50 AM Revision 019d69fa (cdm-dataportal): ref #9659 ext_links appaearance option
Andreas Kohlbecker
11:13 AM Revision c7198d48 (taxeditor): ref #9629: iterate over causes of exception
Katja Luther
09:57 AM feature request #9655 (Resolved): When adding a new team member open search dialogue immediately
this is fixed now, please review. Katja Luther
09:55 AM Revision b108d934 (taxeditor): ref #9655: code cleaning
Katja Luther
09:50 AM Revision a3ebe576 (taxeditor): ref #9655: adapt TeamMemberSection to call selection dialog when c...
Katja Luther

06/10/2021

10:12 PM Revision 20125bcd (cdm-dataportal): avoiding accessing unset properties
Andreas Kohlbecker
09:38 PM Revision fc1b00e2 (cdm-dataportal): ref #9659 ext_links migration of old setting complete - bugfi...
Andreas Kohlbecker
08:29 PM Revision a14257fa (cdm-dataportal): ref #9659 ext_links migration of old setting complete
Andreas Kohlbecker
03:42 PM feature request #9664 (Resolved): Add nomenclaturalTitleCache to TeamOrPersonBase
Similar to collectorTitle(Cache) we need a cache for nomenclaturalTitle in Person, too.
This is to make it possible ...
Andreas Müller
03:31 PM Revision 819c7b2e (cdmlib): adapt image length in MediaInfoFactoryTest
Andreas Müller
02:36 PM Revision c03b5f5d (cdm-dataportal): ref #9659 preparing old settings migration
Andreas Kohlbecker
01:57 PM Revision b03fb28d (cdm-dataportal): ref #9659 ext_links enable/disable operation
Andreas Kohlbecker
01:25 PM Revision f16aa6b9 (cdmlib): fix #9663: remove additional text and file ending - adapt tests
Katja Luther
01:18 PM Revision 0f9caab7 (cdmlib): fix #9663: remove additional text and file ending - continue
Katja Luther
10:53 AM bug #9663: Remove additional text from media title
please review. Katja Luther
10:52 AM bug #9663 (Resolved): Remove additional text from media title
Applied in changeset commit:cdmlib|e3e87f678eff890bf1f0f478d4973a0b0e6f70de. Katja Luther
10:30 AM bug #9663 (Closed): Remove additional text from media title
mail NK:
Könnte nicht von vornherein dafür gesorgt werde, dass bei der Generierung des Bilddatenamens im "Titel"-C...
Katja Luther
10:52 AM Revision e3e87f67 (cdmlib): fix #9663: remove additional text and file ending
Katja Luther
10:27 AM Revision 0e38f1bf (cdm-dataportal): ref #9659 ext_links editing possible
Andreas Kohlbecker
09:45 AM Revision 62e489ea (cdmlib): add version and SchemaUpdater_5230_5250 for new model version 5.25
Andreas Müller
09:45 AM Revision 0a59dd14 (cdmlib): cleanup
Andreas Müller
09:44 AM bug #9662 (New): CDMLight: Output should summarize all MAN with same name and err. sec
mail WB:
Aber hierzu noch der Wunsch, dass die MAN-sensu Referenzen zusammengefasst werden, wenn der Name und die ...
Katja Luther
09:36 AM bug #9661 (New): Add possibility to clone a MAN
As long as it is not possible to add more than one sensu reference to a MAN, the users need to add more than one MAN ... Katja Luther
08:42 AM feature request #9270: show original spelling on taxon page
Andreas Müller wrote:
> should we close this as duplicate (for #7781)?
??
Andreas Müller
08:29 AM Revision d259fad0 (cdm-dataportal): ref #9659 adding enable/disable operation again
Andreas Kohlbecker

06/09/2021

07:08 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException:...
Andreas Müller wrote:
> Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesi...
Andreas Müller
03:44 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException:...
Please review. The page shows no error anymore: http://portal.cybertaxonomy.org/flora-malesiana-prospective/cdm_datap... Andreas Müller
03:42 PM bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with Hibernat...
I checked in old databases from 12_2020 (before nomenclatural sources movement) and 04_2021 (before deleting old Taxo... Andreas Müller
01:41 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException:...
Strange is, this problem exists only in flora_malesiana_prospective. In no other production database such duplicate r... Andreas Müller
01:25 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException:...
But there are multiple nomSources that link to the same name:
~~~
SELECT *
FROM OriginalSourceBase osb
WHERE o...
Andreas Müller
01:15 PM bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException:...
I tested by calling
~~~
appCtr.getOccurrenceService().findRootUnitDTOs(UUID.fromString("2debf5ee-cb57-40bc-af89-1...
Andreas Müller
06:05 PM Revision 2a3a2a4f (cdm-dataportal): ref #9659 database table scheme for ext_links
Andreas Kohlbecker
06:03 PM Revision 0a381a96 (cdm-dataportal): ref #9659 ext_links overview: removing ensable/disable action
Andreas Kohlbecker
05:51 PM feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomencla...
I will implement the update script now so we also need the fields in taxeditor Andreas Müller
05:36 PM Revision deba3cdd (cdm-dataportal): ref #9659 fixing ext_links edit link
Andreas Kohlbecker
04:40 PM Revision 82e80b81 (cdm-dataportal): ref #9659 admin overview improved and edit form ready
Andreas Kohlbecker
01:32 PM feature request #9655: When adding a new team member open search dialogue immediately
The classes which are involved in creating the new element are:
AbstractUnboundEntityCollectionSection.java and Te...
Katja Luther
10:31 AM feature request #9655: When adding a new team member open search dialogue immediately
Andreas Müller wrote:
> Katja Luther wrote:
> > This is not as easy as it seems because the framework of these coll...
Katja Luther
10:12 AM feature request #9655: When adding a new team member open search dialogue immediately
Katja Luther wrote:
> This is not as easy as it seems because the framework of these collection details views bases ...
Andreas Müller
10:07 AM feature request #9655 (In Progress): When adding a new team member open search dialogue immediately
This is not as easy as it seems because the framework of these collection details views bases on creating a dummy ele... Katja Luther
12:33 PM bug #9660 (New): Define which namerelationships are shown and with which label in DB preference
Preferences for Namerelationshipship output should contain informations about:
* which relationships should be sho...
Katja Luther
11:17 AM feature request #9647: After deduplication the remaining record should get the focus in bulk editor
This should be fixed, please review. Katja Luther
11:13 AM feature request #9647 (Resolved): After deduplication the remaining record should get the focus i...
Applied in changeset commit:taxeditor|5924653e4dd6d9ae695675b7ee5a6f98856a9199. Katja Luther
11:14 AM Revision 5924653e (taxeditor): fix #9647: set focus to deduplication target
Katja Luther
08:56 AM Revision ecd1141f (cdm-dataportal): ref #9659 admin overview on ext_links working
Andreas Kohlbecker
08:55 AM task #9659 (Closed): External Links Module reimplemented for flexible configuration
The links in the *External Links Module* are hard-coded. Adding or changing links always involves developers to take ... Andreas Kohlbecker
08:52 AM Revision e0a61933 (cdmlib): ref #9646: add name relationships to homotypicgroupString and add typ...
Katja Luther

06/08/2021

08:45 PM task #9650: Update all titleCaches after upgrade of cache strategies and formatters
Updated all databases except for col, euromed, euromed_caucasus, flora_malesiana, rl_german_sl, rl_moose, rl-plantae,... Andreas Müller
05:46 PM task #9364 (Closed): Cleanup authors with multiple & and protected names and teams
protected (title)caches moved to new ticket #9658.
All "multiple &" solved.
Potentially dangerous protected cac...
Andreas Müller
05:43 PM task #9658: Cleanup authors with protected names and authors
Protected Teams(nomenclaturalTitle):
AlgaTerra: >14000
Cichorieae: 8487
Cuba: 14
Campanula: 1171
Caryo_amarant...
Andreas Müller
05:43 PM task #9658: Cleanup authors with protected names and authors
Protected Names (still without fulltitlecache and authorshipcache):
Bromeliaceae: 584
Cichorieae: 476
Cuba: 567
...
Andreas Müller
05:42 PM task #9658 (New): Cleanup authors with protected names and authors
copied from #9364
In some databases there are many names with protected caches which may lead to problems when sea...
Andreas Müller
03:52 PM bug #9657 (Closed): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateE...

http://api.cybertaxonomy.org/flora-malesiana-prospective/portal/taxon/2debf5ee-cb57-40bc-af89-173d1d17cefe/rootUnit...
Andreas Kohlbecker
03:39 PM Revision be02c88f (cdmlib): fixing some more bugs
Andreas Kohlbecker
03:21 PM Revision 7599ba75 (cdmlib): fixing NPE in DerivationEventDTO
Andreas Kohlbecker
11:44 AM bug #9651: After creating a new MAN the details view is filled with other MAN
This problem was caused by setting the focus everytime the name editor is refreshed and all containers are redrawed. ... Katja Luther
11:39 AM bug #9651 (Resolved): After creating a new MAN the details view is filled with other MAN
Applied in changeset commit:taxeditor|1b62813be8ba0f6f5cde2384147c62f0c913f1b6. Katja Luther
11:40 AM bug #9654: Deleting a synonym which has no name throws exception
this should be fixed with the last commit, please review. Katja Luther
09:17 AM bug #9654 (Resolved): Deleting a synonym which has no name throws exception
Applied in changeset commit:cdmlib|0bc2d77330a70a6115316b914b952657f990c624. Katja Luther
11:40 AM Revision 1b62813b (taxeditor): fix #9651: setFocus only for selected conceptContainer
Katja Luther
11:31 AM bug #9656 (New): Closing the referencing objects view should cancel the current request
Sometimes request take long because a record has many referencing objects. The easiest way to stop this seems to be c... Andreas Müller
09:14 AM Revision 0bc2d773 (cdmlib): fix #9654: avoid NPE for synonym without name
Katja Luther
08:52 AM feature request #9655 (Closed): When adding a new team member open search dialogue immediately
Currently one has to first push the +-button and then the search button but the search button is the only button to p... Andreas Müller

06/07/2021

10:06 PM bug #9654 (Closed): Deleting a synonym which has no name throws exception
When deleting a synonym (maybe also a taxon) an undefined exception is thrwon "Error thrown but no associated excepti... Andreas Müller
05:22 PM bug #9358: OptionalDataException during HTTP invoker call
Auch bei Cuba trat das Problem jetzt wieder bei der Eingabe von **Verbreitungsdaten** auf:
~~~
WGB:
erster Ein...
Andreas Müller
04:51 PM Revision c428113e (cdm-dataportal): Merge tag '5.24.1' into develop
tagging hfx release 5.24.1 Andreas Kohlbecker
04:51 PM bug #9629: Better handling of OptionalDataException
You could e.g. recursively iterate through exception e and its causes e.getCause() and check all these exceptions for... Andreas Müller
04:45 PM bug #9629: Better handling of OptionalDataException
For testing you could manually throw an OptionalDataException and try to catch it correctly. Andreas Müller
04:43 PM bug #9629 (Feedback): Better handling of OptionalDataException
Reopen this ticket. Using toString is incorrect method to check if an exception is in the stacktrace.
exception.to...
Andreas Müller
04:51 PM Revision c02c7498 (cdm-dataportal): Merge branch 'hotfix/5.24.1'
Andreas Kohlbecker
04:50 PM Revision f4d1f849 (cdm-dataportal): Merge branch 'develop' into hotfix/5.24.1
Andreas Kohlbecker
04:35 PM Revision 53911330 (cdm-dataportal): finding package local composer - 2
Andreas Kohlbecker
04:31 PM Revision 298df01d (cdm-dataportal): backup filename with minute granularity
Andreas Kohlbecker
04:26 PM Revision a59edf6c (cdm-dataportal): finding package local composer
Andreas Kohlbecker
03:13 PM Revision 73e0c626 (cdm-dataportal): fix-permission.sh bugfix
Andreas Kohlbecker
03:11 PM Revision 1e12be41 (cdm-dataportal): fix-permission.sh and updating README
Andreas Kohlbecker
02:52 PM Revision b84e63d6 (cdm-dataportal): feedback of fix-permission.sh
Andreas Kohlbecker
02:48 PM Revision 04aea066 (cdm-dataportal): fixing permissions of fix-permission.sh
Andreas Kohlbecker
02:45 PM Revision c2a36c08 (cdm-dataportal): admin script to fix permissions
Andreas Kohlbecker
12:53 PM Revision 8716981b (cdm-dataportal): update script with more doc and preserving symlinks
Andreas Kohlbecker
11:29 AM task #9653 (New): update system table with new installation profile name and location
The installation profile `CDM_Portal` has been renamed to `cdm_portal`. Now Drupal complains with a User warning: "Th... Andreas Kohlbecker
11:20 AM feature request #9652 (New): instances status report web service
For many devOp use cases it is important to know
* if all instances have been successfully started
This web ser...
Andreas Kohlbecker
10:10 AM Revision 90def588 (taxeditor): avoid NPE
Katja Luther
10:07 AM bug #9651 (Closed): After creating a new MAN the details view is filled with other MAN
mail WB:
Hallo,
es geht um die EIngabe eines MAN mit dem gleichen Namen wie ein bereits bestehender MAN (derzeit...
Katja Luther
09:09 AM Revision 04434a55 (cdm-dataportal): test independent from clean_url setting
Andreas Kohlbecker
08:50 AM Revision 73d7cb40 (cdm-dataportal): test independend from module location
Andreas Kohlbecker

06/04/2021

10:12 PM Revision 53bfedc2 (cdm-dataportal): adapting test suite to new installation package structure
Andreas Kohlbecker
11:37 AM bug #9646 (In Progress): CDM Light: Add name relationship to concatenated string for homotypic gr...
implemented a first version analogue to portal implementation. Needs more discussion how to handle names also in syno... Katja Luther
11:26 AM Revision 1cdff041 (cdmlib): ref #9645, #9646: add namerelations to homotypicGrouString and refere...
Katja Luther

06/03/2021

02:46 PM task #9650 (In Progress): Update all titleCaches after upgrade of cache strategies and formatters
Before the databases need to be checked for data dirty data which could be overwritten by cache update (e.g. referenc... Andreas Müller
01:48 PM bug #9649 (Resolved): Specimens sometimes have empty titleCache instead of class<UUID>
E.g. in additiviy_ontology after running titleCache update for records 72 and 74 Andreas Müller
01:37 PM task #9648 (New): Remove duplicated extensions
In cichorieae (maybe also E+M) some reference records had a large number of similar extensions.
Most of them (in cic...
Andreas Müller
01:00 PM feature request #9647 (Closed): After deduplication the remaining record should get the focus in ...
this is helpful when working on longer lists because after save the list jumps to the beginning otherwise Andreas Müller
10:39 AM feature request #8476 (Closed): Implement support for TermCollection.isFlat in TaxEditor
This seems to be fully fixed now. I move it back to 5.24 as it was fixed there.
Only open issue (menu) was moved to ...
Andreas Müller
08:23 AM bug #9646 (Resolved): CDM Light: Add name relationship to concatenated string for homotypic group
mail WB:
Name relationships werden in der Konkatenierung der homotypischen Gruppen in CDM-Light nicht berücksichti...
Katja Luther
08:21 AM bug #9645 (Closed): CDM Light: Add Type Statement Reference to homotypicalGroup.csv
mail WB:
Hallo,
diese Referenz haben wir offenbar in homotypicGroup.csv vergessen. Die ist für Cuba ziemlich wich...
Katja Luther

06/02/2021

03:10 PM Revision 85326264 (taxeditor): ref #9448: remove E4 from file names - bulkeditor continue
Katja Luther
03:06 PM Revision 865e32f6 (taxeditor): ref #9448: remove E4 from file names - adapt fragment.e4xmi
Katja Luther
01:23 PM Revision 8a6625ad (taxeditor): ref #9448: remove E4 from file names - continue
Katja Luther
01:20 PM Revision a6d3d9c5 (taxeditor): ref #9448: remove E4 from file names - supplementalDataView
Katja Luther
01:16 PM Revision bbae6889 (taxeditor): ref #9448: remove E4 from file names - coninue and cleanup
Katja Luther
12:47 PM Revision 45e18d0e (taxeditor): code cleaning
Katja Luther
12:34 PM Revision 38e9eb06 (taxeditor): ref #9448: remove E4 from file names - cdmViewer
Katja Luther
12:30 PM Revision 3eb83ba9 (cdm-dataportal): making ci scripts executable
Andreas Kohlbecker
12:30 PM Revision 1645f1e2 (taxeditor): ref #9448: remove E4 from file names - bulkeditor continue
Katja Luther
12:27 PM Revision 843eefc4 (taxeditor): ref #9448: remove E4 from file names - bulkeditor package
Katja Luther
12:24 PM Revision c47199f3 (cdm-dataportal): Merge branch 'release/5.24.0' into develop
jenkins
12:24 PM Revision 85f6952f (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
jenkins
12:24 PM Revision 4bb90f2f (cdm-dataportal): updating poms for branch'release/5.24.0' with non-snapshot ve...
jenkins
12:24 PM Revision 803fc583 (cdm-dataportal): release-preparation: production level css
jenkins
12:13 PM Revision c58e5687 (cdm-dataportal): updating poms for 5.25.0-SNAPSHOT development
jenkins
12:08 PM Revision fa228679 (taxeditor): ref #9448: remove E4 from file names - continue
Katja Luther
12:04 PM Revision 2611dff9 (taxeditor): ref #9448: remove E4 from file names
Katja Luther
11:50 AM Revision 0d88bbd4 (taxeditor): Merge branch 'release/5.24.0' into develop
jenkins
11:50 AM Revision 031baf62 (taxeditor): Merge branch 'release/5.24.0'
jenkins
11:48 AM Revision da969bb3 (cdm-dataportal): release-preparation: production level css
jenkins
11:45 AM Revision 717af2aa (cdm-server): Merge branch 'release/5.24.0' into develop
jenkins
11:45 AM Revision f780fcfc (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
11:44 AM Revision a2edd9ec (cdm-server): updating poms for branch'release/5.24.0' with non-snapshot versions
jenkins
11:42 AM Revision ef93e952 (cdm-webapp): Merge branch 'release/5.24.0' into develop
jenkins
11:42 AM Revision 13e17276 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
11:42 AM Revision 06c02838 (cdm-webapp): updating poms for branch'release/5.24.0' with non-snapshot versions
jenkins
11:42 AM Revision c1e7bfd3 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.24.0
jenkins
11:42 AM Revision 36a499c6 (cdm-vaadin): Merge branch 'release/5.24.0' into develop
jenkins
11:42 AM Revision 81415a2d (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
11:38 AM Revision ba1014bf (cdm-vaadin): updating poms for branch'release/5.24.0' with non-snapshot versions
jenkins
11:37 AM Revision 13817a25 (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0
jenkins
11:32 AM bug #9630 (Closed): Make the handling of computed description configurable
Code is cleaned up. I check the structured descriptions and create a new ticket if necessary. Katja Luther
11:25 AM Revision 59fa4a9b (cdmlib): Updating develop poms back to pre merge state
jenkins
11:25 AM Revision 3a298583 (cdmlib): Merge branch 'master' into develop
jenkins
11:25 AM Revision 627867d1 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
11:25 AM Revision def9db7a (cdmlib): Merge branch 'release/5.24.0'
jenkins
11:09 AM Revision 512616ce (cdmlib): updating poms for branch'release/5.24.0' with non-snapshot versions
jenkins
11:06 AM Revision 6ab495c1 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.24.0-S...
jenkins
11:06 AM Revision ff128f85 (cdm-webapp): updating poms for 5.24.0 branch with snapshot versions
jenkins
11:06 AM Revision 1f268784 (cdm-webapp): updating poms for 5.25.0-SNAPSHOT development
jenkins
11:05 AM Revision 463f5c7b (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.25.0-S...
jenkins
11:03 AM Revision 2e85a104 (cdm-vaadin): jenkins bumping cdmlib.version to 5.24.0-SNAPSHOT
jenkins
11:03 AM Revision 0ebe4a8b (cdm-vaadin): updating poms for 5.24.0 branch with snapshot versions
jenkins
11:03 AM Revision 92e8e83e (cdm-vaadin): updating poms for 5.25.0-SNAPSHOT development
jenkins
11:03 AM Revision abde3bb8 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
jenkins
10:59 AM Revision b43ac178 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
jenkins
10:59 AM Revision 43e40bda (cdm-vaadin): jenkins bumping cdmlib.version to 5.26.0-SNAPSHOT
jenkins
10:56 AM Revision d9d02bca (cdm-vaadin): updating poms for 5.25.0-SNAPSHOT development
jenkins
10:56 AM Revision 8baba0a0 (cdm-vaadin): updating poms for 5.24.0 branch with snapshot versions
jenkins
10:56 AM Revision e974b018 (cdm-vaadin): jenkins bumping cdmlib.version to 5.25.0-SNAPSHOT
jenkins
10:56 AM Revision 7fbd6a6c (cdm-server): updating poms for 5.25.0-SNAPSHOT development
jenkins
10:56 AM Revision 37d8780f (cdm-dataportal): updating poms for 5.25.0-SNAPSHOT development
jenkins
10:55 AM Revision 06b435a4 (taxeditor): Updated version in pom / project files to taxeditor version : 5.25...
jenkins
10:55 AM Revision 2ee57d46 (taxeditor): Updated version in pom / project files to taxeditor version : 5.24...
jenkins
10:51 AM Revision ef97cad1 (cdmlib): updating poms for 5.25.0-SNAPSHOT development
jenkins
10:41 AM bug #9642 (Closed): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Done Andreas Kohlbecker
10:20 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> >
> > >I guess there is still a test to be adapted?
> >...
Andreas Müller
10:16 AM bug #9642 (Feedback): hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Andreas Müller wrote:

>
> >I guess there is still a test to be adapted?
>
> whyt exactly do you mean?
Isn...
Andreas Kohlbecker
09:15 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
But I removed the order by from the media specimen sql. As this query always returns max 1 result order by is not nec... Andreas Müller
09:13 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
Andreas Kohlbecker wrote:
> In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaI...
Andreas Müller
08:46 AM bug #9642: hibernate.QueryException in OccurrenceDaoHibernateImpl.countMedia()
In principle OK. In case of MediaSpecimens the list of Media ids collected by `getMediaIds()` is sorted twice: fist b... Andreas Kohlbecker
10:40 AM Revision 678da343 (cdm-dataportal): ref #9642 adapting test method to more media appearing in the...
Andreas Kohlbecker
10:17 AM Revision 57a53d78 (taxeditor): fix #8476: fix paste not allowed for nodes if tree is flat
Katja Luther
10:17 AM feature request #8476: Implement support for TermCollection.isFlat in TaxEditor
Applied in changeset commit:taxeditor|57a53d78c9cac39492c450ea46b24dc207de55fc. Katja Luther
09:04 AM feature request #8476 (Resolved): Implement support for TermCollection.isFlat in TaxEditor
Andreas Müller wrote:
> Please also test for d&d from vocabulary editor. I have not tested yet.
With the last com...
Katja Luther
10:09 AM Revision 02c718f2 (taxeditor): ref #8776: correct enable/disable allowDuplicates
Katja Luther
10:08 AM Revision 37f2b410 (cdmlib): ref #8776: fix contains duplicates in dto
Katja Luther
09:15 AM Revision 7c47b73f (cdmlib): ref #9642 remove unnecessary order by
Andreas Müller
09:01 AM Revision 12e7c169 (taxeditor): ref #8476: fix d&d in flat tree and cleanup
Katja Luther
08:24 AM bug #9641 (Closed): NameTypeDesignationEditor: LIE related to typifiedNames.nomenclaturalSource
Andreas Kohlbecker
 

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