Activity
From 12/08/2020 to 01/06/2021
01/06/2021
- 02:27 PM feature request #9114: Handle malformed URIs in user type
- In #9111#note-1 AK suggests to also encode fragment and query parts. This has **not** been implemented in the origina...
- 02:15 PM feature request #9114: Handle malformed URIs in user type
- Katja, can you please check if you can find out what the httpinvoker problem is. I currently can't start the TaxEdito...
- 12:08 PM feature request #9114 (In Progress): Handle malformed URIs in user type
- I implemented a new class eu.etaxonomy.cdm.common.URI and use this in model but also at other places like import sour...
- 02:20 PM feature request #9111 (Resolved): Handle Malformed URIs
- I removed the related code again as #9114 is now more or less implemented and URI encoding is now done in cdmlib. Ple...
- 02:18 PM Revision 9916da4a (taxeditor): ref #9111, ref #9114 remove TaxEditor specific URI encoding code as encoding is handled in cdmlib now
- 01:07 PM Revision 84aa450d (cdmlib): uncomment RdfViewTest.testNameInformationRdf as it seems to work currently
- 01:01 PM Revision 9691cba9 (cdmlib): cleanup
- 01:00 PM Revision c22065e1 (cdmlib): ref #9114 fix RdfViewTest
- 11:00 AM Revision 5402f2a6 (cdmlib): cleanup
- 11:00 AM Revision 4ad992ed (cdmlib): ref #9114 further adapt jsonConfigurations and add new constructor to URI wrapper
- 10:50 AM Revision 3154d43f (taxeditor): ref #9114 further adapt some classes to URI wrapper in taxeditor
- 10:49 AM Revision adb769b4 (taxeditor): cleanup
- 10:18 AM Revision f9c3f295 (cdmlib): ref #9114 adapt json mapping to new URI wrapper
- 10:17 AM Revision 6b33224a (cdmlib): ref #9114 adapt javadoc for new URI wrapper user type
- 10:17 AM Revision 7ab5b913 (cdmlib): cleanup
- 01:35 AM Revision 4d87641f (cdmlib): ref #9114 add toFile() to URI to wrapper
- 01:30 AM Revision 5acb8103 (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 01:29 AM Revision 2ab21f97 (taxeditor): cleanup
- 12:34 AM Revision 7b06bd8f (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 12:33 AM Revision 53e60781 (taxeditor): cleanup
01/05/2021
- 09:49 PM Revision 15c5de38 (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 09:49 PM Revision 00b46185 (taxeditor): cleanup
- 09:37 PM Revision 5dfe9f9b (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 09:27 PM Revision 38556872 (taxeditor): cleanup
- 09:26 PM Revision f5a55599 (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 09:07 PM Revision 5b2e9e6b (cdmlib): ref #9114 add compareTo to URI wrapper
- 09:02 PM Revision 96378f2b (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor (cont.)
- 09:02 PM Revision 66eb9f49 (taxeditor): cleanup
- 08:34 PM Revision c7a6e70f (taxeditor): cleanup
- 08:34 PM Revision bf3cb991 (taxeditor): ref #9114 adapt some classes with URI to wrapper in taxeditor
- 08:16 PM Revision dd94c99b (cdmlib-apps): ref #9114 adapt URI to wrapper in cdmlib-app (cont.)
- 08:13 PM Revision 7cc5a1d7 (cdm-vaadin): cleanup
- 08:13 PM Revision 4cd4de2d (cdm-vaadin): ref #9114 adapt URIs to URI wrapper in vaadin
- 08:08 PM Revision 999006a7 (cdmlib): ref #9114 preliminary ignore RdfViewTest
- 08:07 PM Revision f588e53b (cdmlib): cleanup
- 08:05 PM Revision de8249cf (cdmlib): ref #9114 add URI Wrapper and replace all java.net.URI occurrences by the wrapper in cdmlib
- 07:45 PM Revision 20a31445 (cdmlib-apps): Adapt CentaureaCloneActivator to moved clone method
- 07:45 PM Revision 26790e9b (cdmlib-apps): ref #9114 adapt URI to wrapper in cdmlib-app
- 07:23 PM Revision b920f5c2 (cdmlib-apps): cleanup
- 05:45 PM Revision 2720ea2c (cdmlib): cleanup
01/04/2021
- 07:38 PM Revision 5da100f1 (cdmlib): ref #9366 fix test in TypeDesignationSetManagerTest
- 07:17 PM bug #9366: Specimen type designation with specimen having only collection name but not collection code does not show collection information
- Please review
- 07:14 PM bug #9366 (Resolved): Specimen type designation with specimen having only collection name but not collection code does not show collection information
- Applied in changeset commit:cdmlib|99d3463856a840dd42c0532791b67b299b7b7fed.
- 07:08 PM bug #9366 (Closed): Specimen type designation with specimen having only collection name but not collection code does not show collection information
- e.g. Scorzonera kurtii Yıld. in Ot Sist. Bot. Dergisi 18(2): 15. 2012 in Cichorieae DB
The holotype collection inf... - 07:14 PM Revision 99d34638 (cdmlib): fix #9366 add collection name to specimen titleCache if collection code does not exist
- 07:13 PM Revision 960711fc (cdmlib): cleanup
12/22/2020
- 09:09 PM bug #9365 (Closed): Reuse taxon does not work in new Taxon dialogue
- partly copied from #5114.
If reuse taxon is selected still a new taxon is created.
Also the secundum field shou... - 08:52 PM feature request #4896 (Closed): Bulkeditor: deduplication of objects of different type
- Generally this works. Open issue is handled in #9361
- 08:37 PM task #9364 (In Progress): Cleanup authors with multiple & and protected names and teams
- 07:29 PM task #9364: Cleanup authors with multiple & and protected names and teams
- Protected Teams(nomenclaturalTitle):
AlgaTerra: >14000
Cichorieae: 8487
Cuba: 14
Campanula: 1171
Caryo_amarant... - 03:56 PM task #9364: Cleanup authors with multiple & and protected names and teams
- Protected Names (still without fulltitlecache and authorshipcache):
Bromeliaceae: 584
Cichorieae: 476
Cuba: 567
... - 03:17 PM task #9364 (Closed): Cleanup authors with multiple & and protected names and teams
- (high priority only to first issue as it is related to #2200)
In context of #2200 I already checked names with >1 ... - 08:16 PM feature request #2200 (Closed): Handle multiple authors for names correctly when caching
- This can be closed as it works now as expected. Open data issues are handled in #9364
The only directly related is... - 10:51 AM Revision dc310f85 (cdmlib): ref #4770, ref #4908, ref #5163 remove commented line as it seems to work now
- 10:10 AM Revision f8fa7762 (cdmlib): ref #4770, ref #4908, ref #5163 try to remove explicit setting of protected nomecncl. title in convertPerson2Team
- 09:59 AM bug #5163 (Closed): Converting persons to team members may result in "-empty team-"
- The "empty team" issue has been solved. The handling of team members has been moved to follow up ticket #9363 as it i...
- 09:56 AM feature request #9363 (New): Allow to parse the new team when converting person to team
- copied from #5163
When converting a person to a team does not get team members by default. We could add a configur... - 09:48 AM Revision 6057b354 (cdmlib): ref #4770, ref #4908, ref #5163 some finetuning on convertPerson2Team
- 12:14 AM bug #2578 (Closed): Improve "move synonym"
- Now we always move the full homotypical group to the other taxon, so this is fixed.
The check that the synonym is ... - 12:07 AM Revision 304fcfc8 (cdmlib): ref #4770, ref #4908, ref #5163 assert that team has protected nomenclatural title after convertPerson2Team
12/21/2020
- 11:39 PM bug #9362 (New): Convert Team to Person and vice versa saves immediately
- When converting a team to a person or converting a person to a team the operation is immediately executed and not wai...
- 11:32 PM feature request #4908 (Closed): adding convert Team to Person and Person to Team to the bulk editor
- Open issues fixed or moved to new ticket.
- 11:32 PM Revision b07820f4 (taxeditor): ref #4908 adapt error message for MergeException
- 11:31 PM Revision 01f597fe (cdmlib): ref #4770, ref #4908 add test for person is null in person2Team converter
- 11:27 PM feature request #9361 (New): Give more specific information why person can not be converted to team
- copied from #4908 and #4896 (says that current implementation is only a workaround as a suitable return type for isMe...
- 11:09 PM Revision 58a9c0ab (cdmlib): ref #4770, ref #4908 handle person is null in person2Team converter
- 10:46 PM feature request #4770 (Closed): Allow convert person to team
- the open issue is fixed now. We can close the ticket
- 10:45 PM Revision d7943997 (cdmlib): ref #4770 handle unprotected titlecache for person2Team converter and some finetuning for empty persons
- 10:39 PM Revision a7cbfd9c (cdmlib): ref #4770 fix clone for AgentBase.contact
- 10:38 PM Revision f3a14906 (cdmlib): cleanup
- 03:15 PM Revision 2e9c058b (cdmlib): cleanup
- 03:14 PM Revision 2b772077 (cdmlib): ref #4770 fix handling nomenclatural title for convertPerson2Team
- 03:00 PM Revision 94722700 (cdmlib): improve generics for save() method
- 02:59 PM Revision c9b75310 (cdmlib): cleanup
- 01:44 PM Revision 180577bd (taxeditor): ref #4908 adapt German menu label
- 01:36 PM feature request #4769 (Closed): Allow convert team to person
- I used this intensively for deduplicating authors in cyprus DB and problems never occured. So I guess we can close th...
- 01:26 PM bug #9360 (Feedback): Parsed hybrids can not be persisted
- In Flora of Cyprus I tried to persist a hybrid formula (Aegilops biuncialis × geniculata) but got an NPE in TaxonName...
12/18/2020
- 11:38 PM feature request #7894 (Closed): [CHECK] Import sourceNumber as Identifier for references
- As ERS did not complain about missing numbers during the last 1.5 years I guess everything went well.
- 11:37 PM feature request #7800 (Closed): Parse preliminary RefDetails
- As the import did run and most of the above RefDetails were parsed I think we can close this ticket. However, there a...
- 11:18 PM feature request #9204 (Closed): Update cdmlib and taxeditor dependencies
- I close this ticket as related to v5.18 and open a new one for the remaining (and new) issues
- 11:17 PM task #9359 (Closed): Update cdmlib, taxeditor, cdmserver etc. dependencies
- A lot of version updates and updates to how dependencies are handled in TaxEditor has been done already in #9204.
... - 11:13 PM task #9208 (Closed): Move cdmlib-print and cdmib-remote to taxeditor.printpublisher
- I think we can close this ticket.
There is a very important follow up ticket #9351 (assigned to AK) that needs to ... - 11:04 PM bug #9354 (Feedback): Sorting in distribution editor is broken
- There are still open issues as the comparator does not follow the comparator contract and handling of names with rank...
- 10:55 PM feature request #6076: Specimen biocase search should work on observations
- What needs to be done to close this ticket?
Is it for review? If yes, how to review? Which search did not work? In T... - 10:44 PM feature request #7262 (Closed): add progress monitor to csv print export and cdm light export
- Looks like this is fixed (I did not check for CSV export as it is not so relevant anymore)
- 10:34 PM bug #7013 (Closed): NonUniqueObjectException for setSecundumReferenceForSubtree
- As far as I know and have tried this works now. Also the progress monitor seems to work again. Therefore I close the ...
- 10:33 PM Revision 2f7a80f7 (taxeditor): ref #9349 adapt TaxEditor to method move for cloneSubtree - try to fix compile errors
- 10:26 PM Revision 863c4112 (taxeditor): ref #9349 adapt TaxEditor to method move for cloneSubtree
- 10:25 PM Revision 14ac3831 (taxeditor): cleanup
- 10:06 PM bug #7098 (Closed): reuse name does not work
- The method has been fully refactored in the meanwhile so I guess the above question is not relevant anymore. Closing ...
- 09:57 PM Revision cd0bfb6e (cdmlib): try to fix failing test in suite (cont.)
- 09:32 PM Revision 5c696121 (cdmlib): ref #9349 add doRecursive to subtreeCloning
- 09:29 PM Revision 71f6ac57 (cdmlib): cleanup
- 09:29 PM Revision d1198615 (cdmlib): try to fix failing test in suite (cont.)
- 08:51 PM Revision 34140e24 (cdmlib): ref #9349 rename newClassificationName method (cont.)
- 08:48 PM Revision 1b873fea (cdmlib): try to fix failing test in suite
- 08:47 PM Revision 0120e292 (cdmlib): ref #9349 rename newClassificationName method
- 08:47 PM Revision 60617880 (cdmlib): cleanup
- 08:37 PM Revision 2da76eb1 (cdmlib): ref #9349 fix test for nomenclaturalStatus in name cloning
- 08:20 PM Revision e9612b75 (cdmlib): ref #9349 deprecate setReuseNames(false)
- 08:19 PM Revision c5bb8419 (cdmlib): ref #9349 move cloneSubtree to taxonNodeService
- 08:18 PM Revision 77c5bf22 (cdmlib): remove deprecated methods from classificationService
- 08:17 PM Revision 6077af92 (cdmlib): cleanup
- 07:41 PM feature request #4867 (Feedback): Add menu item for subtree cloning
- It seems that the menu entry was removed or does not work anymore, even with experimental features being switched on....
- 07:25 PM task #9228: Adaptations to allow editing Centaurea in Flora of Greece
- After running the import it became clear that not reusing names is not a good idea as
* handling name relationship... - 07:03 PM Revision dcd42a41 (cdmlib): ref #9349 improve name cloning (including documentation as name cloning is not straight forward)
- 05:52 PM bug #9358: OptionalDataException during HTTP invoker call
- If it is true that this problem occurs client side we should catch the exception in a way that it becomes clear that ...
- 04:28 PM bug #9358: OptionalDataException during HTTP invoker call
- Same issue but slightly different stacktrace
~~~
last remote method : http://api.cybertaxonomy.org:80/euromed/rem... - 04:27 PM bug #9358: OptionalDataException during HTTP invoker call
- ERS: Das könnte sein. Ich habe auf meinem Rechner zuhause manchmal tatsächlich Kapazitätsprobleme - Ich werde das mal...
- 04:20 PM bug #9358: OptionalDataException during HTTP invoker call
- Lazy initializing distributions.
~~~
at org.hibernate.proxy.pojo.javassist.JavassistLazyInitializ... - 04:11 PM bug #9358: OptionalDataException during HTTP invoker call
- ~~~
last remote method : http://api.cybertaxonomy.org:80/euromed/remoting/common.service
last remote request client... - 04:11 PM bug #9358 (New): OptionalDataException during HTTP invoker call
- Note: first issue to solve is catching the exception client side as explained in comment 6 => #9629
The bug in com... - 12:02 PM Revision 239cf764 (cdmlib): cleanup
- 12:01 PM Revision 1b50bc76 (cdmlib): move model comparators to own package
- 11:25 AM bug #9142: The Agent search dialog shows duplicated entries
- Andreas Müller wrote:
> Thats what I thought. It is actually not really a wrong implementation of the method but due... - 11:14 AM bug #9142 (Feedback): The Agent search dialog shows duplicated entries
- Thats what I thought. It is actually not really a wrong implementation of the method but due to the above described s...
- 10:54 AM bug #9142 (Resolved): The Agent search dialog shows duplicated entries
- First I thought it was because the search method was called twice but the real cause was the wrong implementation of ...
- 11:24 AM Revision 84e04ed3 (cdmlib): ref #9142: use clazz for FROM statement in getUuidAndAbbrevTitleCache for agents
- 11:11 AM bug #9264: Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- please review
- 10:59 AM bug #9264 (Resolved): Flag for toggle button for linking taxon with navigator looses/switch value without clicking the button
- Applied in changeset commit:taxeditor|d3334540d33466758ed37e2c7648f74f99420f43.
- 10:50 AM Revision f0cf9026 (cdmlib): ref #9142: fix getUuidAndAbbrevTitleCache for agents
- 10:18 AM Revision d3334540 (taxeditor): fix #9264: use eventbus for updating link with taxon
12/17/2020
- 08:11 PM Revision b7f8c9d4 (taxeditor): Merge branch 'hotfix/5.18.2'
- 07:53 PM Revision 34753cbb (taxeditor): remove cdmlib-remote-webapp.war from git in hotfix branch
- (cherry picked from commit e8d037bd184f407b89f09df7d93155119480d7b1)
- 07:52 PM Revision 840605a4 (taxeditor): fix NPE for cloned lectotype typedesignations
- (cherry picked from commit 11c7cb1711a7ed2dc828b81318fcaf34e34a3ef9)
- 07:14 PM Revision 45c8cb20 (taxeditor): Updated version in pom / project files to taxeditor version : 5.18.2 and cdmlib version : 5.18.0
- 04:08 PM Revision e8d037bd (taxeditor): remove cdmlib-remote-webapp.war from git in hotfix branch
- 03:50 PM Revision 5b06a013 (taxeditor): Merge branch 'hotfix/5.18.1'
- 03:40 PM Revision 7bc7988e (taxeditor): remove cdmlib-remote-webapp.war from git
- 11:49 AM bug #9142 (Feedback): The Agent search dialog shows duplicated entries
- 11:39 AM bug #9142: The Agent search dialog shows duplicated entries
- can you shortly explain what the problem was and why the commit fixes it?
- 11:36 AM bug #9142: The Agent search dialog shows duplicated entries
- Applied in changeset commit:taxeditor|359b77dda6efc328563cfd93e63aee841662b4e7.
- 11:30 AM bug #9142 (Resolved): The Agent search dialog shows duplicated entries
- This should be fixed. Please review.
- 11:35 AM Revision 359b77dd (taxeditor): fix #9142: fix doubled entries in agent selection dialog
- 10:35 AM Revision 59066f6b (taxeditor): adapt SpringSource GA Repository to https
- 10:34 AM feature request #9337: Open issues for reimplementation of termtree editors
- 16. Add "Open in Vocabulary" to term tree editor context menu; this is generally needed the primary usecase is to all...
- 09:16 AM feature request #9337 (In Progress): Open issues for reimplementation of termtree editors
- 10:10 AM feature request #8289 (Resolved): Add "Open in RefObj view" to term editor context menu
- please review.
- 10:09 AM Revision dc2e648b (taxeditor): ref #8289: add open in to term editor context menu
- 09:13 AM bug #9344: Datasets in Descriptive Dataset Navigator should be ordered
- please review
- 09:13 AM bug #9344 (Resolved): Datasets in Descriptive Dataset Navigator should be ordered
- Applied in changeset commit:taxeditor|b5f32b5d274ff26e8bf15ed9f42c61f028e79584.
- 09:13 AM Revision b5f32b5d (taxeditor): fix #9344: add comparator to descriptive dataset navigator
- 08:48 AM bug #9353 (Resolved): Copy & Paste creates dirty data in term trees
- Applied in changeset commit:taxeditor|27ca515332a1068e6f49ccff9a4466bce556a548.
- 08:48 AM Revision 27ca5153 (taxeditor): fix #9353: fix c&p in term trees
12/16/2020
- 04:29 PM Revision 9c9bb6b3 (taxeditor): remove doubled is
- 04:17 PM Revision 63fd9baa (taxeditor): rename labels for DDS navigator
- 04:13 PM Revision c34d4827 (taxeditor): open in of nomencl.source for the sourced name
- 03:16 PM Revision 25cc3cf4 (taxeditor): adapt DescriptionHelper for refObjects description of nomclat. sources
- 03:02 PM Revision b63ed015 (taxeditor): fix NPE for cloned lectotype typedesignations
- 03:01 PM Revision 11c7cb17 (taxeditor): fix NPE for cloned lectotype typedesignations
- 09:46 AM Revision 4e3c1b39 (taxeditor): remove error message for MAN without sec
- 09:44 AM Revision cca35f36 (taxeditor): do not expand the server side preferences
12/15/2020
- 12:43 PM Revision ea6ec182 (taxeditor): ref #9337: remove obsolete part descriptions
- 12:40 PM Revision f6ba2ccb (taxeditor): ref 9337: rename all termtree related classes
- 11:36 AM feature request #9338 (Resolved): Restructure term menus
- Both menues have the same structure and also the handling of opening the editors are synchronized.
- 11:33 AM Revision 22ac94a9 (taxeditor): ref #9338: restructure term menues and adapt handling
12/14/2020
- 10:44 AM Revision 38018d82 (cdmlib): fix import of dna data with different provider software version
12/11/2020
- 11:13 AM Revision 2cb343b3 (taxeditor): adapt path to cdmlib-remote-webapp.war from webapp to local
- 10:57 AM Revision 849c20bf (taxeditor): fix cdmlib-print and cdmlib-remote for hotfix 5.18.1
- 10:02 AM Revision 56cf64f7 (taxeditor): ref #9356: hotfix solution
- 09:48 AM Revision 40d48f6f (taxeditor): ref #9356: hotfix solution
- 08:20 AM bug #9357 (New): Advanced search shows selection for all classification even if only 1 classification is available for a dataportal
- In the flora of Greece dataportaal only the classification "Vascualar plants of Greece" should be shown
: minor
- 10:41 PM Revision b8ddc6c3 (cdmlib-apps): update cdmlib-app to v5.19.0
- 03:29 PM bug #9356 (In Progress): Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
- 02:02 PM bug #9356 (Closed): Comparison method violates its general contract for SourceComparator and TypeDesignationComparator
- There are two comparators violating the contract: SourceComparator in taxeditor and typeDesignationComparator in cdml...
- 01:26 PM bug #9350 (Resolved): Create new taxonnode ignores the publish flag
- yes, this is resolved and the workaround removed.
- 12:51 PM bug #9350 (In Progress): Create new taxonnode ignores the publish flag
- is this resolved and open for review (the develop version)?
- 01:21 PM Revision eb3f9882 (taxeditor): ref #9350: fix is implemented in cdmlib therefore we can remove the workaround in taxeditor
- 12:59 PM bug #9355 (New): Selection dialog for secundum reference does not work correctly
- mail NK:
ich kann keine neue sec. Referenz mehr auswählen, ohne vorher die bereits vorhandene zu löschen. Ich bin ... - 11:32 AM Revision a3d9156f (taxeditor): cleanup
- 11:28 AM Revision 9360e6f2 (taxeditor): cleanup
12/09/2020
- 04:06 PM bug #9354 (Resolved): Sorting in distribution editor is broken
- fixed for hotfix 5.18.1
- 04:05 PM bug #9354 (Closed): Sorting in distribution editor is broken
- The comparator for sorting the taxa in distribution editor does not work correctly.
- 04:04 PM bug #9353 (Closed): Copy & Paste creates dirty data in term trees
- It was missed to implement copy & paste for the dto implementation of the term tree editors, the menu items are still...
- 10:24 AM Revision 6b6ae919 (taxeditor): fix distribution editor comparator
- 10:02 AM Revision f34ce847 (taxeditor): fix distribution editor comparator
12/08/2020
- 01:51 PM bug #9352 (New): Missing order in quantitative data wizard
- mail AM:
bei Eingabe von QantData scheint mir die Reihenfolge der Felder etwas beliebig. Kann man das evtl. fest v... - 12:55 PM feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
- WGB:
die Lösung für dieses Ticket hängt von der breiteren Diskussion dieser Kategorien und ihrer Verbindung mit de... - 12:52 PM bug #8971: Long running tasks in taxon navigator should disable the navigator
- WGB:
hier nur nochmal die Bestätigung, dass das ein an verschiedenen Stellen auftretendes Problem ist, besonders, ... - 10:56 AM Revision 3c793992 (taxeditor): ref #9199: fix missing handling of name in source in nomenclatural source
- 10:52 AM Revision af6adc60 (taxeditor): ref #9199: fix missing handling of name in source in nomenclatural source
- 08:37 AM bug #9351 (Closed): Include new locations for cdmlib-print and cdmlib-remote in jenkins release script
- cdmlib-print and cdmlib-remote are now only available in taxeditor.printpublisher.
Therefore the according links t...
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