bug #7013: NonUniqueObjectException for setSecundumReferenceForSubtree - Edit - Redmine

bug #7013

NonUniqueObjectException for setSecundumReferenceForSubtree

Added by Katja Luther about 1 year ago. Updated 10 months ago.

Status:

Resolved

Priority:

Highest

Assignee:

Andreas Müller

Category:

taxeditor

Target version:

Release 4.14

Start date:

10/10/2017

Due date:

% Done:

Severity:

normal

Found in Version:

Description

The following exception occurs for SetSecundumReferenceForSubtree.


java.lang.IllegalStateException: org.hibernate.NonUniqueObjectException: A different object with the same identifier value was already associated with the session : [eu.etaxonomy.cdm.model.taxon.Taxon#3321]
    at eu.etaxonomy.taxeditor.util.ProgressMonitorClientManager.pollMonitor(ProgressMonitorClientManager.java:141)
    at eu.etaxonomy.taxeditor.util.ProgressMonitorClientManager.pollMonitor(ProgressMonitorClientManager.java:57)
    at eu.etaxonomy.taxeditor.model.AbstractUtility$5.run(AbstractUtility.java:921)
    at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
Caused by: org.hibernate.NonUniqueObjectException: A different object with the same identifier value was already associated with the session : [eu.etaxonomy.cdm.model.taxon.Taxon#3321]
    at org.hibernate.engine.internal.StatefulPersistenceContext.checkUniqueness(StatefulPersistenceContext.java:648)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performUpdate(DefaultSaveOrUpdateEventListener.java:284)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.entityIsDetached(DefaultSaveOrUpdateEventListener.java:227)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:92)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:73)
    at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:648)
    at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:640)
    at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:635)
    at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.saveOrUpdate(CdmEntityDaoBase.java:303)
    at eu.etaxonomy.cdm.api.service.ServiceBase.saveOrUpdate(ServiceBase.java:274)
    at eu.etaxonomy.cdm.api.service.TaxonServiceImpl.saveOrUpdate(TaxonServiceImpl.java:3222)
    at eu.etaxonomy.cdm.api.service.TaxonServiceImpl.saveOrUpdate(TaxonServiceImpl.java:1)
    at eu.etaxonomy.cdm.api.service.ServiceBase.saveOrUpdate(ServiceBase.java:35)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
    at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
    at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy170.saveOrUpdate(Unknown Source)
    at eu.etaxonomy.cdm.api.service.TaxonNodeServiceImpl.setSecundumForSubtree(TaxonNodeServiceImpl.java:789)
    at eu.etaxonomy.cdm.api.service.TaxonNodeServiceImpl$1.doRun(TaxonNodeServiceImpl.java:872)
    at eu.etaxonomy.cdm.common.monitor.RemotingProgressMonitorThread.run(RemotingProgressMonitorThread.java:46)

Associated revisions

Revision 50600204 (diff)
Added by Katja Luther about 1 year ago

setSecundum for subtree throws Exception with monitor, as workaround remove monitor

Revision 6755abd1 (diff)
Added by Katja Luther 10 months ago

ref #7013: code cleaning and fix of NonUniqueException without progress monitor

Revision 5f6aa5c3 (diff)
Added by Katja Luther 10 months ago

ref #7013: reload reference in setSecundumReference to avoid NonUniqueObjectException

History

#1 Updated by Katja Luther about 1 year ago

This isexception does not appear if it is called without the monitoring thread. As a workaround the monitoring thread is removed and we have to find a new solution with monitoring

#2 Updated by Andreas Müller about 1 year ago

Target version changed from Release 4.11 to Release 4.12

#3 Updated by Andreas Müller about 1 year ago

Target version changed from Release 4.12 to Release 4.13

#4 Updated by Andreas Müller 11 months ago

Target version changed from Release 4.13 to Release 4.14

#5 Updated by Katja Luther 10 months ago

now this problem also appears whithout the progress monitor.

Hallo,
habe versucht, für die ganzen Apocynaceae in Fl. Cuba die sec. Ref. zu ändern, Fehler.
Funktioniert auch für nur eine Gattung nicht.
HG
W

login : 
editor version : 4.12.2
server :  ()
schema version : 
os : Windows 10 10.0 amd64
java : 1.8.0_161
org.hibernate.NonUniqueObjectException: A different object with the same identifier value was already associated with the session : [eu.etaxonomy.cdm.model.reference.Reference#151]
                at org.hibernate.engine.internal.StatefulPersistenceContext.checkUniqueness(StatefulPersistenceContext.java:648)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performUpdate(DefaultSaveOrUpdateEventListener.java:284)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.entityIsDetached(DefaultSaveOrUpdateEventListener.java:227)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:92)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:73)
                at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:648)
                at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:640)
                at org.hibernate.engine.spi.CascadingActions$5.cascade(CascadingActions.java:218)
                at org.hibernate.engine.internal.Cascade.cascadeToOne(Cascade.java:398)
                at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:323)
                at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:162)
                at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:111)
                at org.hibernate.event.internal.AbstractFlushingEventListener.cascadeOnFlush(AbstractFlushingEventListener.java:150)
                at org.hibernate.event.internal.AbstractFlushingEventListener.prepareEntityFlushes(AbstractFlushingEventListener.java:141)
                at org.hibernate.event.internal.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:74)
                at org.hibernate.event.internal.DefaultAutoFlushEventListener.onAutoFlush(DefaultAutoFlushEventListener.java:44)
                at org.hibernate.internal.SessionImpl.autoFlushIfRequired(SessionImpl.java:1251)
                at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1767)
                at org.hibernate.internal.CriteriaImpl.list(CriteriaImpl.java:363)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.findByUuid(CdmEntityDaoBase.java:375)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase.findByUuid(VersionableDaoBase.java:72)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase.findByUuid(VersionableDaoBase.java:37)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.load(CdmEntityDaoBase.java:637)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase.load(VersionableDaoBase.java:92)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase.load(VersionableDaoBase.java:37)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonNodeDaoHibernateImpl.setSecundum(TaxonNodeDaoHibernateImpl.java:498)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonNodeDaoHibernateImpl.setSecundumForSubtreeAcceptedTaxa(TaxonNodeDaoHibernateImpl.java:472)
                at eu.etaxonomy.cdm.api.service.TaxonNodeServiceImpl.setSecundumForSubtree(TaxonNodeServiceImpl.java:801)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
                at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy1841.setSecundumForSubtree(Unknown Source)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy2190.setSecundumForSubtree(Unknown Source)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
                at org.springframework.remoting.support.DefaultRemoteInvocationExecutor.invoke(DefaultRemoteInvocationExecutor.java:39)
                at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
                at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
                at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:74)
                at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
                at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
                at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
                at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
                at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:871)
                at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
                at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
                at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
                at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:808)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316)
                at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
                at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:213)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
                at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
                at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
                at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
                at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
                at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585)
                at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
                at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577)
                at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223)
                at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127)
                at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515)
                at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
                at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061)
                at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
                at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215)
                at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97)
                at org.eclipse.jetty.server.Server.handle(Server.java:497)
                at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:310)
                at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
                at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540)
                at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
                at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
                at java.lang.Thread.run(Thread.java:745)
                at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
                at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
                at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
                at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:150)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy51.setSecundumForSubtree(Unknown Source)
                at eu.etaxonomy.taxeditor.navigation.navigator.operation.SetSecundumForSubtreeOperation$1.run(SetSecundumForSubtreeOperation.java:101)
                at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)