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bug #7098

reuse name does not work

Added by Katja Luther about 1 year ago. Updated 11 months ago.

Status:
Feedback
Priority:
Highest
Assignee:
Category:
taxeditor
Target version:
Start date:
11/29/2017
Due date:
% Done:

0%

Severity:
normal
Found in Version:

Description

Hallo,

leider kann ich auch nach Neustart und diversen Tricks und Versuchen den vorhandenen Namen

Trigastrotheca molluginea F.Muell. (ist als Typus der Gattung eingegeben worden)

nicht nutzen (re-usen, siehe Fehler unten), will ihn aber auch nicht neu anlegen, damit er nicht doppelt im System hängt.

Was schlagt ihr vor, Andreas oder Katja?

Danke und Gruß,
Sabine

Von: Mering, Sabine von
Gesendet: Dienstag, 28. November 2017 20:31
An: VL-BGBM-EditSupport
Betreff: Error message

Hallo,

ich habe versucht, ein neues Taxon anzulegen und dabei einen (kurz vorher angelegten) existierenden Namen (New – reuse existing name) zu verwenden.

Trigastrotheca molluginea F.Muell.

Viele Grüße,
Sabine

login : s.vonmering
editor version : 4.11.4
server : api.cybertaxonomy.org (cybertaxonomy.org) / caryophyllales_spp
schema version : 4.7.0.0.201710040000
os : Windows 7 6.1 amd64
java : 1.8.0_151
org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: eu.etaxonomy.cdm.model.name.TaxonName.status, could not initialize proxy - no Session
                at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:567)
                at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:205)
                at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:546)
                at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:133)
                at org.hibernate.collection.internal.PersistentSet.iterator(PersistentSet.java:163)
                at eu.etaxonomy.cdm.strategy.cache.name.TaxonNameDefaultCacheStrategy.getNomStatusTags(TaxonNameDefaultCacheStrategy.java:345)
                at eu.etaxonomy.cdm.strategy.cache.taxon.TaxonBaseDefaultCacheStrategy.getNameTags(TaxonBaseDefaultCacheStrategy.java:106)
                at eu.etaxonomy.cdm.strategy.cache.taxon.TaxonBaseDefaultCacheStrategy.getTaggedTitle(TaxonBaseDefaultCacheStrategy.java:65)
                at eu.etaxonomy.cdm.strategy.cache.taxon.TaxonBaseDefaultCacheStrategy.getTitleCache(TaxonBaseDefaultCacheStrategy.java:158)
                at eu.etaxonomy.cdm.strategy.cache.taxon.TaxonBaseDefaultCacheStrategy.getTitleCache(TaxonBaseDefaultCacheStrategy.java:46)
                at eu.etaxonomy.cdm.strategy.cache.taxon.TaxonBaseDefaultCacheStrategy.getTitleCache(TaxonBaseDefaultCacheStrategy.java:1)
                at eu.etaxonomy.cdm.model.common.IdentifiableEntity.generateTitle(IdentifiableEntity.java:581)
                at eu.etaxonomy.cdm.model.common.IdentifiableEntity.getTitleCache(IdentifiableEntity.java:211)
                at eu.etaxonomy.cdm.persistence.hibernate.CdmPreDataChangeListener.generateCaches(CdmPreDataChangeListener.java:152)
                at eu.etaxonomy.cdm.persistence.hibernate.CacheStrategyGenerator.saveOrUpdateOrMerge(CacheStrategyGenerator.java:48)
                at eu.etaxonomy.cdm.persistence.hibernate.CacheStrategyGenerator.onSaveOrUpdate(CacheStrategyGenerator.java:33)
                at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:648)
                at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:640)
                at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:635)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.saveOrUpdate(CdmEntityDaoBase.java:303)
                at eu.etaxonomy.cdm.api.service.ServiceBase.saveOrUpdate(ServiceBase.java:280)
                at eu.etaxonomy.cdm.api.service.ServiceBase.saveOrUpdate(ServiceBase.java:35)
                at sun.reflect.GeneratedMethodAccessor16050.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
                at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy1739.saveOrUpdate(Unknown Source)
                at eu.etaxonomy.cdm.api.service.TaxonNodeServiceImpl.createNewTaxonNode(TaxonNodeServiceImpl.java:694)
                at sun.reflect.GeneratedMethodAccessor18323.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
                at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy1747.createNewTaxonNode(Unknown Source)
                at sun.reflect.GeneratedMethodAccessor18323.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy2081.createNewTaxonNode(Unknown Source)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
                at org.springframework.remoting.support.DefaultRemoteInvocationExecutor.invoke(DefaultRemoteInvocationExecutor.java:39)
                at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
                at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
                at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:74)
                at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
                at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
                at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
                at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
                at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:871)
                at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
                at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
                at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
                at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:808)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316)
                at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
                at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:213)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
                at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
                at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
                at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
                at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
                at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
                at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585)
                at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
                at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577)
                at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223)
                at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127)
                at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515)
                at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
                at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061)
                at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
                at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215)
                at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97)
                at org.eclipse.jetty.server.Server.handle(Server.java:497)
                at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:310)
                at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
                at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540)
                at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
                at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
                at java.lang.Thread.run(Thread.java:745)
                at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
                at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
                at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
                at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:150)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy90.createNewTaxonNode(Unknown Source)
                at eu.etaxonomy.taxeditor.newWizard.NewTaxonNodeWizard.saveEntity(NewTaxonNodeWizard.java:71)
                at eu.etaxonomy.taxeditor.newWizard.AbstractNewEntityWizard.performFinish(AbstractNewEntityWizard.java:54)
                at org.eclipse.jface.wizard.WizardDialog.finishPressed(WizardDialog.java:790)
                at org.eclipse.jface.wizard.WizardDialog.buttonPressed(WizardDialog.java:423)
                at org.eclipse.jface.dialogs.Dialog$2.widgetSelected(Dialog.java:618)
                at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:249)
                at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
                at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418)
                at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079)
                at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4236)
                at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3824)
                at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
                at org.eclipse.jface.window.Window.open(Window.java:794)
                at eu.etaxonomy.taxeditor.navigation.navigator.e4.handler.NewTaxonNodeHandlerE4.execute(NewTaxonNodeHandlerE4.java:53)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                at java.lang.reflect.Method.invoke(Unknown Source)
                at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
                at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282)
                at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:264)
                at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:132)
                at org.eclipse.e4.core.commands.internal.HandlerServiceHandler.execute(HandlerServiceHandler.java:152)
                at org.eclipse.core.commands.Command.executeWithChecks(Command.java:494)
                at org.eclipse.core.commands.ParameterizedCommand.executeWithChecks(ParameterizedCommand.java:488)
                at org.eclipse.e4.core.commands.internal.HandlerServiceImpl.executeHandler(HandlerServiceImpl.java:210)
                at org.eclipse.e4.ui.workbench.renderers.swt.HandledContributionItem.executeItem(HandledContributionItem.java:433)
                at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem.handleWidgetSelection(AbstractContributionItem.java:454)
                at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem$3.handleEvent(AbstractContributionItem.java:482)
                at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
                at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418)
                at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079)
                at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4236)
                at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3824)
                at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
                at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
                at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
                at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
                at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
                at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
                at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
                at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
                at eu.etaxonomy.taxeditor.Application.start(Application.java:24)
                at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
                at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
                at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
                at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
                at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                at java.lang.reflect.Method.invoke(Unknown Source)
                at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
                at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
                at org.eclipse.equinox.launcher.Main.run(Main.java:1519)

Associated revisions

Revision cbe5c67d (diff)
Added by Katja Luther about 1 year ago

fix problem when reusing name for new taxon

History

#1 Updated by Katja Luther about 1 year ago

  • Category set to taxeditor
  • Assignee set to Katja Luther
  • Priority changed from New to Highest

#2 Updated by Katja Luther about 1 year ago

  • Status changed from New to Resolved
  • Assignee changed from Katja Luther to Andreas Müller
  • Target version changed from Unassigned CDM tickets to Release 4.12

please review

#3 Updated by Andreas Müller 11 months ago

  • Status changed from Resolved to Feedback
  • Assignee changed from Andreas Müller to Katja Luther

It seems to work.

Only question I have is:

In the code the current line 734

dao.saveOrUpdate(parent);

has been commented with the above commit. Why has this been reverted in commit 72d4b12df6 "delete taxonNodes improved". I don't understand if this line is important or not and why it has been added again in commit handling delete.

However, I think we can close the ticket as the functionality seems to work correctly now.

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