Activity
From 12/22/2019 to 01/20/2020
01/20/2020
- 04:44 PM Revision f7d60a17 (cdmlib): cleanup
- 04:44 PM Revision 2a055418 (cdmlib): add parameterized HQL API access
- 04:04 PM bug #8821 (New): ConcurrentModificationException during deduplication in bulk editor
- Hallo,
etwas Neues – Referenzen Deduplizierung, nach delete Nachfrage Save für vorheriges Delete.
HG
W
~~~
log... - 03:53 PM bug #8627: NullPointerException (NPE) on saving Specimen Editor (list)
- AK, why is this a **copy** of #8626?
Did you mean "related to"? - 03:50 PM bug #7699 (New): NPE in CdmTransientEntityCacher.getCacheElement()
- This exception appears quite often therefore I put it to the current milestone.
We need to find to handle it so t... - 03:06 PM feature request #8721 (Closed): Use webservice to get all biocase provider listed by gbif
- Generally this works. Open issues moved to #8820
- 03:04 PM task #8820 (New): Improve BioCase provider selection list
- Copied from #8721
* The access points should be searchable also by the accesspoint title, For the BGBM Herbarium t... - 02:54 PM Revision caac9df5 (cdmlib): ref #8819: handle cf and aff names in abcd import
- 02:54 PM Revision c02db033 (cdmlib): ref #8817: workaround for timeperiods with time 00:00:00 for missing time information
- 02:52 PM feature request #8489 (Resolved): Further issues for DB preferences
- putting back to 5.10 for review, no changes since then. Follow up ticket for open issues: #8818.
During review put n... - 02:51 PM feature request #8819 (New): import cf. and aff. names as child taxa of the mentioned genus
- Names with cf. or aff. should handled as child taxa of the mentioned genus for example *Amphora cf. minutissima W. Sm...
- 02:48 PM task #8818 (New): Remaining issues for DB preferences
- Copied from #8489
* check wether all (wanted) preferences are available as db preferences
* menu.disableMul... - 02:25 PM bug #8817 (New): abcd import gathering date contains T00:00:00 when time is missing
- The string comes from biocase and the parser is not able to parse it.
This time information is wrong, this should be... - 02:00 PM Revision f96382ee (cdm-server): Merge branch 'release/5.12.0' into develop
- 02:00 PM Revision 9d851ccc (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 01:59 PM Revision ef52afd4 (cdm-server): updating poms for branch'release/5.12.0' with non-snapshot versions
- 01:58 PM Revision 61c84f74 (cdm-webapp): Merge branch 'release/5.12.0' into develop
- 01:58 PM Revision f13c442c (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 01:57 PM Revision 005dbf5d (cdm-webapp): updating poms for branch'release/5.12.0' with non-snapshot versions
- 01:57 PM Revision 2fe20cbb (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.12.0
- 01:54 PM Revision 3f4fc198 (cdm-vaadin): Merge branch 'release/5.12.0' into develop
- 01:54 PM Revision d411f69c (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 01:51 PM Revision 3a0c7116 (cdm-dataportal): Merge branch 'release/5.12.0' into develop
- 01:51 PM Revision 01f28a92 (cdm-dataportal): updating poms for branch'release/5.12.0' with non-snapshot versions
- 01:51 PM Revision 6c1a05e1 (cdm-dataportal): release-preparation: production level css
- 01:51 PM Revision 4b9974cd (taxeditor): Merge branch 'release/5.12.0' into develop
- 01:51 PM Revision 7da9e82a (taxeditor): Merge branch 'release/5.12.0'
- 01:50 PM Revision 6d263bef (cdm-vaadin): updating poms for branch'release/5.12.0' with non-snapshot versions
- 01:50 PM Revision 381041c8 (cdm-vaadin): jenkins bumping cdmlib.version to 5.12.0
- 01:36 PM Revision b47ca96f (cdmlib): Updating develop poms back to pre merge state
- 01:35 PM Revision 5bf0c1e8 (cdmlib): Merge branch 'master' into develop
- 01:35 PM Revision f46e6cd3 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 01:35 PM Revision 8aeb85f2 (cdmlib): Merge branch 'release/5.12.0'
- 01:19 PM Revision 9b054f3a (cdmlib): updating poms for branch'release/5.12.0' with non-snapshot versions
- 01:16 PM Revision 41786238 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.12.0-SNAPSHOT
- 01:16 PM Revision a73e3a0c (cdm-webapp): updating poms for 5.13.0-SNAPSHOT development
- 01:16 PM Revision 34255452 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.13.0-SNAPSHOT
- 01:03 PM Revision a4c74614 (taxeditor): Updated version in pom / project files to taxeditor version : 5.13.0-SNAPSHOT and cdmlib version : 5.13.0-SNAPSHOT
- 01:03 PM Revision abbd53ac (taxeditor): Updated version in pom / project files to taxeditor version : 5.12.0 and cdmlib version : 5.12.0
- 01:02 PM Revision e488b742 (cdm-vaadin): jenkins bumping cdmlib.version to 5.12.0-SNAPSHOT
- 01:02 PM Revision 85bd4946 (cdm-vaadin): updating poms for 5.13.0-SNAPSHOT development
- 01:02 PM Revision 06ece406 (cdm-vaadin): updating poms for 5.12.0 branch with snapshot versions
- 01:02 PM Revision e3d5292e (cdm-vaadin): jenkins bumping cdmlib.version to 5.13.0-SNAPSHOT
- 01:02 PM Revision ca702305 (cdm-dataportal): updating poms for 5.13.0-SNAPSHOT development
- 01:02 PM Revision 6dbb7b01 (cdm-server): updating poms for 5.13.0-SNAPSHOT development
- 12:59 PM Revision eeabb43a (cdmlib): updating poms for 5.13.0-SNAPSHOT development
- 12:55 PM feature request #8677 (Closed): Add distribution aggregation to set subtree menu
- >source type selection per source mode
maybe there is a misunderstanding, I meant source **type** . There is still... - 12:50 PM feature request #8677: Add distribution aggregation to set subtree menu
- >use message() for enumeration labels
This seems not yet to be used by "Aggregation mode". I move this to follow u... - 12:45 PM feature request #8805 (Closed): In distribution editor synoms should be available as concatenated String
- Works and ticket can be closed. Maybe in future we can also include ppSyns and MAN and maybe there is even the possib...
- 10:48 AM feature request #8805 (Resolved): In distribution editor synoms should be available as concatenated String
- 12:21 PM Revision e756cd24 (cdmlib): ref #8815 adapt return type for uuidAndTitleCache method in taxonNodeService
- 12:17 PM bug #8736 (Closed): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
- 12:12 PM bug #8736 (Feedback): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
- I guess this can be closed in 5.12 as there is a follow up ticket in 5.13?
- 11:45 AM Revision 5bb4d1e3 (cdmlib): preliminary ignore DistributionAggregationTest
- 11:24 AM feature request #6676 (Duplicate): A user with READ access to taxa but WRITE access to factual data cannot update the factual view via the name editor
- Katja Luther wrote:
> I think this is fixed with #8810, @AK is this right?
Exactly.
- 11:07 AM feature request #6676 (Resolved): A user with READ access to taxa but WRITE access to factual data cannot update the factual view via the name editor
- I think this is fixed with #8810, @AK is this right?
- 11:23 AM bug #8816 (Worksforme): NoSuchElementException during adding Specimens to Matrix Editor
- Exception during adding Specimens to Matrix Editor
Server side:
~~~
[caryophyllales_spp] 11:42:48,590 INFO [Th... - 11:20 AM Revision f24b885c (cdmlib): cleanup
- 11:20 AM bug #6585 (Rejected): Combo menu items have orange font
- I cant reproduce this.
This depends for sure on the linux desktop theme that Patrick was using in this case. Since h... - 11:05 AM bug #6585 (Feedback): Combo menu items have orange font
- 11:04 AM bug #6585: Combo menu items have orange font
- on windows I can't reproduce this issue, @AK, could you please have a look on linux?
- 11:19 AM Revision 7de0210e (cdmlib): preliminary ignore StructuredDescriptionAggregationTest
- 11:19 AM Revision df326698 (cdmlib): cleanup
- 11:15 AM Revision b4188660 (taxeditor): ref #8805 fix potential NPE
- 11:09 AM bug #8810 (Closed): In taxeditor parts without permissions should be disabled
- 11:02 AM bug #6036: Problems with deleting type names
- to have look if this is still an open issue set to Highest.
- 11:01 AM Revision f59c3f4b (cdmlib): ref #8805 cleanup TaxonDistributionDTO and simplify concatenateSynonyms method
- 10:59 AM feature request #7981: Add configuration UI for matrix description aggregation
- Move this to 5.13
- 10:48 AM feature request #8749: Add proposalProvider to AbstractComboElement
- check which parts are already solved and which still open, therefore move to 5.13 but maybe create a new ticket and m...
- 10:37 AM bug #8645 (Closed): rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
- fixed
- 10:36 AM Revision 2638cb89 (taxeditor): avoid NPE when polling for progressmonitor
- 10:08 AM Revision d59d32c3 (taxeditor): avoid NPE when polling for progressmonitor
- 09:47 AM Revision 47c1bab5 (cdmlib): ref #8815: add UuidAndTitleCache methods again in taxonnodeservice - continue
01/18/2020
- 04:22 PM Revision 4e41b80c (cdmlib-apps): ref #2826 handle verbatim years better
- 04:21 PM Revision a9047fed (cdmlib-apps): ref #2826 handle ined. authors
- 04:20 PM Revision 8fb964f0 (cdmlib-apps): ref #2826 cleanup
- 12:19 PM Revision deed567d (cdmlib-apps): ref #2826 remove not needed cdmTargetClass
- 11:45 AM Revision bb5bac58 (cdmlib-apps): minor, cleanup
01/17/2020
- 09:21 PM feature request #8706: taxeditor error report with timestamps
- ready for review
- 09:21 PM feature request #8706 (Resolved): taxeditor error report with timestamps
- Applied in changeset commit:taxeditor|6e1d17962e4f23d254da242b13a7e188d69793ca.
- 03:13 PM feature request #8706 (In Progress): taxeditor error report with timestamps
- 09:21 PM Revision 6e1d1796 (taxeditor): fix #8706 error messages with remonte request time stamps
- 09:20 PM Revision 30acb146 (cdmlib): ref #8706 DateHeaderFilter to add Date headers to all servelet responses
- 08:25 PM Revision 046b8cfb (cdmlib): cleanup
- 03:33 PM Revision a6cc90d1 (taxeditor): ref #8706 reporting error time in messages
- 12:09 PM task #8813 (In Progress): Zen theme base font with better redability
- 12:08 PM task #8813: Zen theme base font with better redability
- Dann gehen wir das nach dem Release an:
1. Umstellen des Portals auf größere Schrift und etwas größeren Zeilena... - 12:08 PM task #8813: Zen theme base font with better redability
- Hallo Andreas,
danke! Ja, finde ich eine gute Idee, das breiter abzustimmen.
Schöne Grüße,
Norbert - 11:29 AM task #8813 (Feedback): Zen theme base font with better redability
- Hier nochmal die alte (Droid Sans) und neue Schrift (DejaVu Sans) im Vergleich:
: Zen theme base font with better redability
- Hallo Norbert,
Bei den Cichorien hatten wir die Verdana eingestellt, diese steht aber nur auf Windowssystemen... - 08:35 AM task #8813 (Duplicate): Zen theme base font with better redability
- Hallo Andreas,
denkst Du noch daran, wenn Du die Zeit findest, dem Cichorieae-Portal wieder seinen ursprüngli... - 09:42 AM Revision 99a988e9 (taxeditor): ref #8805: fix synonym filter
- 09:26 AM Revision 75e3aef5 (cdmlib): ref #8815: add UuidAndTitleCache methods again in taxonnodeservice
- 09:22 AM bug #8815 (Closed): Clean up TaxonNodeDto and UuidAndTitleCache usage in TaxonNodeService/Dao
- In TaxonNodeService and Dao the usage of TaxonNodeDtp and UuidAndTitleCache duplicates some functionality. This shoul...
- 09:08 AM bug #8814: Clean implementation for permissions with combination of Taxonnode and other permissions
- Please always add "related issues" to follow up tickets not only in ticket description. This way it is linked bedirec...
- 08:49 AM bug #8814 (New): Clean implementation for permissions with combination of Taxonnode and other permissions
- this is a follow up ticket for #8810.
With the actual implementation it is not possible to decide with one call wh...
01/16/2020
- 05:11 PM bug #8810 (Feedback): In taxeditor parts without permissions should be disabled
- 03:20 PM bug #8810: In taxeditor parts without permissions should be disabled
- this temporary solution works as expected, but we will need a more complete solution.
This ticket can be closed on... - 01:53 PM bug #8810 (Resolved): In taxeditor parts without permissions should be disabled
- 12:02 PM bug #8810 (Closed): In taxeditor parts without permissions should be disabled
- The user should not be able to edit entities, he/she does not have the permissions for. When checking the permission ...
- 05:09 PM feature request #8805 (Feedback): In distribution editor synoms should be available as concatenated String
- For me no synonyms are shown in the column. I tested on rem_conf_am with classification "Testklass". At least taxon N...
- 02:13 PM feature request #8805 (Resolved): In distribution editor synoms should be available as concatenated String
- Applied in changeset commit:taxeditor|77172e4955db32cfa9193fbbb03ec81aa7851734.
- 05:08 PM Revision a64ae084 (cdm-dataportal): ref #6878 switching to DejaVu sans
- 04:28 PM Revision a2b8e113 (cdm-dataportal): using default font in all page elements
- 03:52 PM bug #8812 (Resolved): Connection losses in taxeditor HTTP invoker (RemoteAccessException: Could not access HTTP invoker remote service at ...)
- A couple of situations exist in which users report problems due to RemoteAccessExceptions ("Could not access HTTP inv...
- 02:12 PM Revision 5915e0b2 (cdmlib): ref #8805: add synonyms to dto for distribution editor
- 02:11 PM Revision 77172e49 (taxeditor): fix #8805: add synonym column to distribution editor
- 02:01 PM feature request #8749: Add proposalProvider to AbstractComboElement
- should we split the ticket and move open issue to 5.13. At least partly it works as far as I remember from vocabulary...
- 01:58 PM feature request #8749 (In Progress): Add proposalProvider to AbstractComboElement
- need to have a look at this topic again
- 02:00 PM feature request #6760 (Worksforme): specimen import configuration
- I don't what this means exactly. When importing e.g DNA samples of already existing specimen, this is correctly attac...
- 01:54 PM bug #8745 (Closed): Type designations of synonyms missing on specimen page
- This is fixed!
- 01:42 PM bug #8745 (Resolved): Type designations of synonyms missing on specimen page
- 01:48 PM feature request #8299 (Closed): add typification column to scientific name and homotypical group in cdm light
- 01:38 PM feature request #8299: add typification column to scientific name and homotypical group in cdm light
- I don't think we should move this. It was probably fixed in 5.12
- 01:35 PM bug #8645 (Resolved): rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
- Applied in changeset commit:taxeditor|8e6b3b25d268778b6fd3e90a28fe1c3fa9a62e3b.
- 01:35 PM Revision 8e6b3b25 (taxeditor): fix #8645: rename OWL Export menu item
- 01:33 PM bug #8780 (Closed): Repair sortindex does not work on TermTree index
- seems to work, now.
- 01:10 PM bug #8790 (In Progress): Update measurement units for existing quantitative data missing a unit
- 01:08 PM task #8672: Source handling during (distribution) aggregation
- This might be partly implemented in 5.12 already. If fully fixed revert milestone to 5.12
- 01:05 PM feature request #8677 (Resolved): Add distribution aggregation to set subtree menu
- Moved open issues to #8811
Review needed for **this** ticket. - 01:04 PM task #8811 (New): Open issues for "Add distribution aggregation to set subtree menu"
- copied from #8677
* disable rank fields in case aggregation should run only on the 1 selected taxon (and not on s... - 12:55 PM bug #8788 (Feedback): Cloned descriptions do not show up in dataportal anymore
- Is this still an open issue? I somehow remember that you have worked on it at the beginning of the year.
- 12:23 PM feature request #6812: Improve TaxEditor download site
- Issues open here?
- 12:19 PM bug #8809 (Closed): CdmLight Export area without level results in NPE
- 11:29 AM bug #8809 (Resolved): CdmLight Export area without level results in NPE
- Applied in changeset commit:cdmlib|5996b524f4493fa800a843769a45061f497e4b1a.
- 11:27 AM bug #8809 (Closed): CdmLight Export area without level results in NPE
- Areas without a level throwing a NPE.
- 12:06 PM Revision fe9e440d (taxeditor): ref #8810: check for taxonnode permission and whether the user has taxon node granted authorities
- 11:33 AM bug #8737 (Closed): delete taxon included in two classifications deletes taxonname
- this works now as expected
- 11:29 AM task #8130: Check if related feature data is cleared when supported facts type is changed
- I guess this is not yet fixed.
- 11:29 AM Revision 5996b524 (cdmlib): fix #8809: fix NPE for areas without level
- 11:24 AM bug #8808 (Closed): Cdm-Light Export fix name identifier export
- I won't review as it takes too much time. I guess feedback from WGB should be enough.
- 11:19 AM bug #8808 (Resolved): Cdm-Light Export fix name identifier export
- 11:17 AM bug #8808 (Closed): Cdm-Light Export fix name identifier export
- mail WB:
Hallo Katja,
noch eine Frage zum (derzeitigen) CDM-light output: Kann es sein, dass in die NameIdentifie... - 11:23 AM EDIT Platform Etablierung task #8722 (Closed): Provide Manuals and Dokumentation for the Kurs „Integrated Taxonomy“ WiSe 2019/20
- 11:23 AM EDIT Platform Etablierung task #8727 (Closed): Test Workshop workflow
- 11:22 AM EDIT Platform Etablierung task #8704 (Closed): Test specimen import via BioCase and write documentation
- 11:20 AM feature request #8759 (Resolved): Description aggregation : suppress state present when more details are available
- please review
- 11:20 AM Revision 834f548a (cdm-dataportal): ref #8759 conditionally supressing state 'present' in description string representations
- 11:00 AM Revision 358e0b7f (cdm-dataportal): ref #8759 conditionally supressing state 'present' in description table
- 10:59 AM Revision dfd71699 (cdm-dataportal): ref #8807 adaptive headers in description table - changing array indexes
- 10:14 AM bug #8797 (Closed): Navigator tree collapse after moving taxon node
- This works as expected now.
- 10:12 AM feature request #8807 (Closed): description page: Adapt table header to the nature of description elements
- 10:12 AM feature request #8807 (Resolved): description page: Adapt table header to the nature of description elements
- Applied in changeset commit:cdm-dataportal|0e414cc1ad6b178dd09a57eed2bd47d25d07677a.
- 09:48 AM feature request #8807 (Closed): description page: Adapt table header to the nature of description elements
ich sehe gerade, dass die Tabelle die Überschrift „States“ hat in der 2. Spalte. Das ist nicht ganz richtig, da d...- 10:12 AM Revision 0e414cc1 (cdm-dataportal): fix #8807 adaptive headers in description table
- 09:59 AM bug #8806: Multiple representations problem on saving Desriptive Data Set
- If this is reproducable it should be fixed soon.
01/15/2020
- 04:55 PM feature request #8759 (In Progress): Description aggregation : suppress state present when more details are available
- 04:39 PM bug #8733: Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- I updated the ticket description to give some more details on what is did exactly.
Even if there are multiple ways... - 04:33 PM bug #8806 (Worksforme): Multiple representations problem on saving Desriptive Data Set
- This is reproducible each time:
**preparation*
* connect to caryophyllales_spp (version from 2019-12-06) - avai... - 03:18 PM bug #8797 (Resolved): Navigator tree collapse after moving taxon node
- now before refresh the navigator remembers the expanded elements and reopens them after refresh
- 01:48 PM bug #8797 (Feedback): Navigator tree collapse after moving taxon node
- For me the problem still exists. No matter if I use d&d or menu or if I move within a classification or to another cl...
- 03:17 PM Revision 9ffe52d4 (taxeditor): ref #8797: navigator refreshes and opens the expanded elements after moving
- 03:09 PM bug #8511 (Closed): The structure path in the character details view should have a line break
- This works as expected
- 03:00 PM feature request #8805 (Closed): In distribution editor synoms should be available as concatenated String
- For searching for synonym names the distribution editor should have an additional column with the concatenated synonyms.
- 02:24 PM bug #8804 (Worksforme): taxeditor hangs when creating a new classification
- Reproducible with the latest cdm-server and Taxeditor Version: 5.12.0-SNAPSHOT, Build Date: 2020-01-15 **11:50 CET** ...
- 02:06 PM bug #8804: taxeditor hangs when creating a new classification
- I can't reproduce it on my local db. And the recursion seems to be something on library side in PermissionEvaluator
- 01:56 PM bug #8804: taxeditor hangs when creating a new classification
- I tested again locally with another DB where it also occurs ....
will test also on the test server, but this will re... - 01:40 PM bug #8804: taxeditor hangs when creating a new classification
- Can you please test on test/nightly also. This is our reference system for ticket reviews etc. Ofcourse we also need ...
- 01:35 PM bug #8804: taxeditor hangs when creating a new classification
- Andreas Müller wrote:
> I can't reproduce this. Can you give more information. I created classifications in multiple... - 01:17 PM bug #8804: taxeditor hangs when creating a new classification
- I can't reproduce this. Can you give more information. I created classifications in multiple DBs and it worked.
Whic... - 01:08 PM bug #8804: taxeditor hangs when creating a new classification
- I put this into the current milestone since it is really an awful regression.
This issue is really critical and mayb... - 01:05 PM bug #8804 (Worksforme): taxeditor hangs when creating a new classification
~~~
[caryophyllales_spp] 13:04:59,556 DEBUG [qtp759156157-135][or.sp.we.se.DispatcherServlet] - DispatcherServle...- 01:57 PM feature request #8656 (Closed): [DISCUSS] Should only characters be allowed for DescriptiveDataSets/Character Matrix?
- This is fixed with the new implementation.
- 01:50 PM Revision 57aa10c6 (taxeditor): followup to cleanup of taxonNodeDto/UuidAndTitleCache usage
- 01:49 PM Revision 8841d740 (cdmlib): adapted tests for harmonization of taxonnodeDto usage
- 01:48 PM Revision b140cc54 (cdmlib): merge ITaxonNodeService
- 01:44 PM bug #8801 (Closed): Deselected menu items are not reactivated in navigator
- Works as expected now
- 01:43 PM Revision 99f73393 (cdmlib): cleanup taxonnodeDto - UuidAndTitleCache<TaxonNode>
- 01:27 PM Revision a8284340 (taxeditor): ref #8239: disable details, facts and supplemental data for insufficient rights
- 01:21 PM bug #8737: delete taxon included in two classifications deletes taxonname
- Please test on test/caryo_spp. #8804 is not valid for at least this DB (at least on my pc).
- 01:13 PM bug #8737: delete taxon included in two classifications deletes taxonname
- review blocked by #8804
- 01:19 PM bug #8746 (Rejected): Multiple representations problem on saving Matrix Editor
- this MRE did not occur again so far.
- 12:51 PM feature request #7701 (New): Add link to typified name on specimen page of data portal
- this is still an open issue:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/occurrence/8236... - 12:46 PM bug #8745 (Feedback): Type designations of synonyms missing on specimen page
- do you have an example link?
- 12:38 PM task #8683 (Closed): TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache
- 12:36 PM bug #8731 (Closed): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- obviously works since this import has been used very often in the preparation phase for the workshop and in the works...
- 11:46 AM bug #8736 (In Progress): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
- The LIE is apparently fixed but I received another exception:
Server side:
~~~
[caryophyllales_spp] 11:42:48,5... - 11:13 AM feature request #8803 (Resolved): Add "per mm²" to measurement units
- Applied in changeset commit:cdmlib|a65a935cd5279773ac1d32f98e4be04ecd5ea065.
- 11:08 AM feature request #8803 (Closed): Add "per mm²" to measurement units
- This is needed for some Cactaceae characters
- 11:12 AM Revision 6ad1062d (cdmlib): cleanup
- 11:12 AM Revision a65a935c (cdmlib): fix #8803 add per mm² to MeasurementUnit
- 11:12 AM Revision 5675e611 (cdmlib): fix getPage() for deduplication
- 11:12 AM Revision 30df4b0a (cdmlib): cleanup
01/14/2020
- 04:27 PM Revision 207beb84 (cdmlib-apps): cleanup
- 04:23 PM Revision bddc23ae (cdmlib-apps): minor changes to PESI Activators
- 04:15 PM Revision 567f10b2 (cdmlib-apps): latest changes to GreeceImageActivator
- 04:13 PM Revision 3f131c46 (cdmlib-apps): ref #1447 handle null and ERMS pseudo taxa and some minor changes
- 03:56 PM Revision cc5e8c6e (cdmlib): fixing bugs in SwaggerIT and StaticSwaggerApiDoc
- 03:53 PM Revision a3f91025 (cdmlib): fixing bug in descriptions/elementsByType/{classSimpleName} - marker filter was ignored
- 03:21 PM bug #8684 (Closed): ITaxonService.findTaxaByName misses initStrategy Parameter
- 03:21 PM bug #8684: ITaxonService.findTaxaByName misses initStrategy Parameter
- also tested on t edit-test and confirmed that the service is working now
~~~
http http://test.e-taxonomy.eu/cdmse... - 01:56 PM bug #8684 (Resolved): ITaxonService.findTaxaByName misses initStrategy Parameter
- the webservice is now working, tested with:
~~~
http :8081/portal/taxon/doFindByNameParts.json genusOrUninomial=... - 02:06 PM Revision 8867b63b (cdm-dataportal): ref #8771 fixing bug in statistical value processing
- 01:41 PM Revision 76b9084e (cdmlib): ref #8684 fixing bean collection initialization in TaxonDaoHibernateImpl.findTaxaByName
- 11:31 AM feature request #8802 (In Progress): Implement flowering period for Flora of Cyprus
- 11:31 AM feature request #8802 (Closed): Implement flowering period for Flora of Cyprus
- (was "Blütezeiten")
This includes a new DescriptionElement subclass "TermporalData" and a new TimePeriod subclass ...
01/13/2020
- 05:32 PM bug #8684 (In Progress): ITaxonService.findTaxaByName misses initStrategy Parameter
- testing the web service (locally with the caryophlalles_spp database):
~~~
http :8081/portal/taxon/doFindByNamePa... - 05:11 PM bug #8719 (Closed): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null
- as this problem did no longer occur we can close this issue.
- 05:10 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
- 05:07 PM feature request #8686 (Closed): Support CdmLink sources in bibliography
- fragment removed from links - closing ticket.
- 05:06 PM Revision cbe9b085 (cdm-dataportal): ref #8686 removing fragment from link
- 04:56 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- By now we are having quite good solution, and I suggest to close this issue. Please move further requirements and wis...
- 04:16 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > 3 Verbesserungsvorschläge:
> >
> Derzeit ist u.A. vor al... - 04:06 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Andreas Müller wrote:
> 3 Verbesserungsvorschläge:
>
> * Avg, StdAbw und Var nur ausblenden bei min=max, wenn Avg... - 04:54 PM Revision 8726bde3 (cdm-dataportal): ref #8771 documenting phpUnit test execution
- 04:49 PM Revision dd80884c (cdm-dataportal): ref #8771 finetuning of statistical values display and more tests
- 04:35 PM Revision 6b99e174 (cdmlib-apps): ref #1447 underscore for parent diff file
- 03:11 PM Revision 0e1b6929 (cdm-dataportal): ignoring all target folders
- 03:11 PM Revision fd411b34 (cdmlib-apps): ref #1447 remove unncessary casts and cleanup
- 03:11 PM Revision 145a5e49 (cdm-dataportal): removing modules/cdm_dataportal/target/
- 03:07 PM Revision c3fb3bba (cdm-dataportal): ref #8771 more test cases
- 02:48 PM Revision a163fed9 (cdmlib-apps): ref #1447 add utf8 to writer
- 02:20 PM Revision 29d3d2ce (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 02:18 PM Revision 7c808239 (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 02:05 PM Revision 778b241c (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 01:52 PM Revision 458948d0 (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 01:22 PM Revision 2e07d351 (cdm-dataportal): ref #8771 phpunit logging in junit xml format - renaming logfile
- 01:08 PM Revision b2ecf616 (cdm-dataportal): ref #8771 phpunit logging in junit xml format
- 08:23 AM Revision 76c0847f (cdm-dataportal): ref #8771 downgrading to phpUnit 5 for backwards compatibility with php5
01/12/2020
- 01:05 AM Revision ab6f97de (cdmlib-apps): cleanup
- 01:02 AM Revision 874a38f5 (cdmlib-apps): ref #8643 fix FaEu destination 2
01/10/2020
- 02:20 PM Revision 2e91751e (cdmlib): ref #1447 add StringComparator
- 01:01 PM Revision b5b0fcf5 (cdmlib-apps): ref #1447 improve PesiFindIdenticalNamesActivator
- 12:38 PM Revision c938072f (cdmlib): ref #1447 fix findIdenticalName function
- 12:07 PM Revision fa9ef8c4 (cdmlib): minor
- 10:55 AM bug #8800 (Closed): If supplemental data view shows reference it is not possible to select another reference
- I could not reproduce this error anymore, so we can close it.
- 10:54 AM bug #8801: Deselected menu items are not reactivated in navigator
- please review
- 10:19 AM Revision 20553b7e (cdmlib-apps): revert wrong merge changes on findIdenticalNameActivator
- 10:10 AM Revision c13878e2 (cdmlib-apps): merge changes
01/09/2020
- 05:29 PM Revision df2eb131 (cdm-dataportal): ref #8771 unit test for significant figures of statistical values
- 05:28 PM Revision fa718a2c (cdm-dataportal): fixing PHPUnit setup for php 7 and documenting its usage with PHPStorm
- 01:17 PM Revision b22a7fb6 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
- 01:17 PM Revision ce7a0180 (cdmlib): smaller changes in ABCD import
- 01:12 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Andreas Müller wrote:
> Die Zeile verstehe ich nicht:
>
> $precision += $precision < 0 ? - 1 : 1;
>
> Waru... - 12:30 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Die Zeile verstehe ich nicht:
$precision += $precision < 0 ? - 1 : 1;
Warum muss die Richtung der Präzision... - 12:04 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Example on test/cactaceae:
http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/descript... - 12:01 PM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit
- Applied in changeset commit:cdm-dataportal|8480271c782d1cce2fffdb4cb95b0f30d9367712.
- 11:47 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Is there an example page available?
- 11:46 AM feature request #8771 (Feedback): display of average value with precision so that it differs from min and max by one digit
- 3 Verbesserungsvorschläge:
* Avg, StdAbw und Var nur ausblenden bei min=max, wenn Avg=min(=max) bzw. StdAbw und Va... - 11:29 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Hallo,
der Fall x=0 ist der Fall min=max. => avg=min(=max). Also trivial, die Dezimalstellen sollten die gleich... - 11:09 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- please review
- 11:08 AM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit
- Applied in changeset commit:cdm-dataportal|793df79047e8716b03d8ba09feeec495d5f410aa.
- 01:08 PM Revision bd04ba61 (taxeditor): fix NPE during exception handling
- 12:53 PM Revision 86fd29ff (cdmlib): ref #1447 change duplicate finding of names from sec to source reference and allow >2 sources
- 12:00 PM Revision 8480271c (cdm-dataportal): fix #8771 removing comment
- 11:08 AM Revision 793df790 (cdm-dataportal): fix #8771 display of average value with minimum amount of significant figures
01/08/2020
- 06:02 PM Revision 2f4646e0 (cdm-dataportal): ref #8786 renaming all min_max_*() functions to statistical_values_*()
- 05:48 PM task #8786 (Resolved): Display of mean value with min max
- Done!
The trivial case where only one value exists or when Min = Max or when TypicalLowerBoundary = TypicalUpperBo... - 03:32 PM task #8786: Display of mean value with min max
- ich habe in der Ticketbeschreibung nochmals alles zusammengefasst
- 03:22 PM task #8786: Display of mean value with min max
- Sieht gut aus.
Kleine Anmerkung: ich bin mir nicht sicher, ob wir immer eine Sample Size haben. Gerade bei de... - 03:22 PM task #8786: Display of mean value with min max
- Hallo,
Könnten wir den bis-Strick jeweils in die Klammer hinein nehmen, das ist die gebräuchlichere Variante?... - 03:21 PM task #8786: Display of mean value with min max
- Achso, ne, wollten wir nicht eckige Klammern um den Mittelwert? Und die Frage steht noch aus, ob in die eckigen Klamm...
- 03:21 PM task #8786: Display of mean value with min max
- um sicher zu gehen, dass wir jetzt wirklich vom Selben sprechen.
Das Beispiel aus der Ticket Beschreibung (1.... - 10:28 AM task #8786: Display of mean value with min max
- Hallo Norbert,
wie gesagt, finde ich unschön, dass es sprachabhängig ist (in einem Deutschen Portal müssten w... - 10:27 AM task #8786: Display of mean value with min max
- Hallo Andreas,
ja, hab ich auch so gefunden, wäre ich auch mit einverstanden. Ich hatte "mean" ausgeschrieben... - 10:27 AM task #8786: Display of mean value with min max
- Hallo,
vielleicht ist „x bar“ x̄ noch besser. Das sollte mathematisch eindeutig sein.
μ wird wohl auch man... - 10:26 AM task #8786: Display of mean value with min max
- Hallo Andreas,
Mittelwert: ja, solche Details der Darstellung hatte wir noch gar nicht besprechen können.
... - 10:25 AM task #8786: Display of mean value with min max
- Hallo,
es kann gut sein, dass die Schreibweise mit dem Mittelwert zwischen den Min und Max Werten nicht abges... - 05:40 PM Revision cd3ea2e8 (cdm-dataportal): ref #8739 updated explanatory text for statistical values
- 05:32 PM Revision 2eb6acb7 (cdm-dataportal): ref #8786 improved display of min, max, mean and other statistical values
- 05:31 PM Revision b736d380 (cdm-dataportal): typos in README
- 03:14 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Eine Funktion zum runden oder trunkieren nach signifikanten Stellen gibt es in php nicht aber in diesem Stackoverflow...
- 02:59 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
Hallo,
der Vorschlag die Differenz Max - Min für die Berechnung der signifikanten Stellen des Mittelwertes ...- 02:57 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Eigentlich ist das entscheidende ja, wie weit min und max von einander entfernt sind. Bei 98-190 reicht eine Zahl ohn...
- 02:56 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Weitere Beispiele für die Ticket-Beschreibung
- 01:29 PM bug #8800 (Resolved): If supplemental data view shows reference it is not possible to select another reference
- Applied in changeset commit:cdmlib|db7b0ee79b966b68a1d2958214303d4b101f1022.
- 12:32 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference
- I checked Walters log-file (see below). So he also got an error in ReferenceDaoHibernateImpl.getUuidAndTitle but in a...
- 12:14 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference
- AM:
Das klingt ein bisschen wie der Fehler den ich gestern mit dem nicht möglichen Aufrufen des Referenzdialoges f... - 09:31 AM bug #8800 (Closed): If supplemental data view shows reference it is not possible to select another reference
- mail WB:
Hallo,
ich habe ein merkwürdiges Problem beim Editieren einer Referenz, und zwar sowohl aus dem Bulk Edi... - 01:28 PM Revision db7b0ee7 (cdmlib): fix #8800 fix NPE in Reference.getUuidAndTitle
- 12:19 PM bug #8801: Deselected menu items are not reactivated in navigator
- Being resolved this can go into 5.12, correct?
- 11:15 AM bug #8801 (Resolved): Deselected menu items are not reactivated in navigator
- 11:15 AM bug #8801: Deselected menu items are not reactivated in navigator
- the problem seems to be that the menu items are submenu items of "edit subtree" and when for all menu items visibilit...
- 09:33 AM bug #8801 (Closed): Deselected menu items are not reactivated in navigator
- mail AM:
noch ein Problem. Wenn ich ein Multiselect auf Taxa im Navigator mache wird das Set for Subtree Menü di... - 11:07 AM Revision caffc76b (taxeditor): ref #8801: disabled submenu items should be visible again
01/07/2020
- 06:19 PM Revision 4f67e0f9 (cdmlib): temporarily ignore SortIndexUpdaterWrapperTest
- 06:19 PM Revision 8b3c844e (cdmlib): cleanup and javadoc
- 04:50 PM feature request #8787: Improve layout for ExactValue on Description Pages
- Andreas Kohlbecker wrote:
> Implemented.
>
> I did not change the separator to semicolon since we are using the ... - 04:35 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages
- Implemented.
I did not change the separator to semicolon since we are using the comma already for separating all ... - 04:30 PM feature request #8787: Improve layout for ExactValue on Description Pages
- implemented in commit:cdm-dataportal|88e622d25
- 03:48 PM feature request #8787 (In Progress): Improve layout for ExactValue on Description Pages
- 03:47 PM feature request #8787: Improve layout for ExactValue on Description Pages
- [norbert wrote]
ich sehe keine Notwendigkeit einen exact value besonders zu kennzeichnen, bin für semikolon-separ... - 03:39 PM feature request #8787 (Feedback): Improve layout for ExactValue on Description Pages
- Rauten stehen nach meinem Verständniss üblicherweise für "Nummer" oder "Anzahl", damit eine "Exact Value" zu kennzeic...
- 04:42 PM feature request #8798 (Resolved): description page: Show character hierarchy
- done
- 01:45 PM feature request #8798 (Resolved): description page: Show character hierarchy
- The hierarchy of the characters in the character tree should be visualized in the description table
- 04:37 PM Revision fa094d60 (cdm-dataportal): ref #8739 table caption to the top an with smaller font
- 04:33 PM Revision 2d78d276 (cdm-dataportal): ref #8787 uncommenting previously implemented improved display of exact values
- 04:16 PM task #8799 (New): [PESI][E+M] [Discuss] Use reference author instead of (sec)-reference for (Species)ExpertName
- Other databases in PESI use only the expert name (e.g. http://www.eu-nomen.eu/portal/taxon.php?GUID=urn:lsid:marinesp...
- 04:02 PM Revision 88e622d2 (cdm-dataportal): ref #8739 indenting description table entries by character hierarchy - bugfix
- 03:42 PM task #8786: Display of mean value with min max
- [Norbert wrote:]
Noch zu der Darstellung der Werte mit Mittelwert. Wenn ich mich richtig erinnere, waren wir uns e... - 02:27 PM Revision 209feb13 (cdm-dataportal): ref #8739 indenting description table entries by chraracter hierarchy
- 01:32 PM Revision e95b14dd (cdm-dataportal): ref #8739 loading missing name for taxa in render_taxon_or_name()
- 12:40 PM Revision 92e522db (cdm-dataportal): ref #8739 description sources in alphabetical order
- 11:59 AM Revision 31d293b1 (cdm-dataportal): ref #8739 description table header left aligned (affects all data portal tables)
- 11:49 AM bug #8774 (In Progress): Reimplement term tree editors to implement the general save strategy
- 11:20 AM Revision a651a0c4 (cdmlib): cdm light fix export of areas without level
01/06/2020
- 05:01 PM Revision 34743ac7 (cdmlib-apps): ref #8508, ref #8577 treeindex test for E+M validation and common base class for E+M and Erms validation
- 04:57 PM Revision bc416076 (cdmlib-apps): ref #1447 cleanup FaunaEuErmsFindIdenticalNamesActivator
- 12:31 PM bug #8797 (Resolved): Navigator tree collapse after moving taxon node
- please review
- 12:28 PM bug #8797 (Closed): Navigator tree collapse after moving taxon node
- mail Nadja:
Liebe alle,
ich habe einen Bug festgestellt, der das Arbeiten extrem verlangsamt:
Verschiebt man... - 12:30 PM Revision b0947131 (taxeditor): ref #8797: only refresh parent node after moving node
- 09:51 AM Revision 50caf951 (cdm-dataportal): remove : from values of default description elements for specimen page
12/28/2019
- 04:10 PM Revision 2eee7850 (cdmlib-apps): ref #1444 minor fixes for ErmsImportActivator
- 04:09 PM Revision 85c9a0d8 (cdmlib-apps): ref #2717 fix sourceFk handling for pure names
- 04:08 PM Revision 19743136 (cdmlib-apps): ref #8508 fix and finalize taxon status (cache) validation
- 11:45 AM Revision 3d6c7bfc (cdmlib-apps): ref #1444, ref #8508, ref #8509 fix ERMS taxon status handling
- 10:48 AM Revision f859201a (cdmlib-apps): ref #8508 further improvements to ERMS validation
12/27/2019
- 11:16 PM Revision 0e601fdc (cdmlib-apps): ref #8509 fix sourceFk handling in PESI taxon export
- 11:14 PM Revision 744bd412 (cdmlib-apps): ref #8509 improve tagged names handling in PESI export (ERMS and others)
- 11:11 PM Revision c0411992 (cdmlib-apps): ref #1444, ref #7976 fix erronous subgenus formatting in ERMS
- 11:09 PM Revision c12d2903 (cdmlib-apps): ref #1444, ref #7976 better logging for unhandled unacceptReason
- 10:49 PM Revision 15d48661 (cdmlib-apps): cleanup
- 04:48 PM task #8796 (New): [PESI][DW] Handling of Taxon.SourceFk
- In SQL Script the Taxon.SourceFk was filled the following way:
* for taxa from ERMS, FauEU and IF it was filled by... - 11:09 AM bug #8508 (In Progress): [PESI][ERMS] ERMS import pipeline validation
- 09:48 AM Revision 2abd2851 (cdmlib-apps): ref #8508 improve treeindex validation and remove source type 'i' handling
- 09:39 AM Revision 8f402cc0 (cdmlib-apps): ref #1444, ref #2871, ref #7976 improve authorship handling for MAN
- 09:37 AM Revision 751d08a3 (cdmlib-apps): ref #1444 remove 2 taxon status checks from ErmsTaxonImportValidator as they are not correct anymore
- - status is now handled via id and tu_accfinal, not via taxonStatus field
- 09:31 AM task #8795 (New): [PESI][DW] CHECK all fields on correct handling of merged data in PESI export
- Sometimes merged data needs to be pipe separated or something else. All fields need to be checked if they handle this...
12/26/2019
- 11:33 PM task #8794 (New): [PESI][Merge]+[DW] Check all SQL scripts related to merging
- Check all SQL script which are not single DB specific on Y:\BDI\PESI\sh\DBs2PESI\vCDM
- 09:12 PM Revision a12e9e83 (cdmlib-apps): ref #2104 remove fixme from unused PesiNoteSourceExport_Old
- 08:07 PM bug #8793 (New): [E+M] In-Ref authors should have full (non-abbreviated) author title without initials
- This is a E+M requirement for nom. ref. formatting
- 07:29 PM Revision dd68b822 (cdmlib-apps): ref #8508 latest changes
- 07:28 PM Revision e706b35f (cdmlib-apps): cleanup
- 07:21 PM Revision 58968197 (cdmlib-apps): ref #1444, ref #7976 improve misapplication handling in ERMS import
- 06:41 PM task #7976 (Closed): [PESI][ERMS] Erms taxon import
- 05:02 PM task #8792: Issues to have in mind for ERMS import
- Open issues from comparing SQL scripts (Y:\BDI\PESI\sh\DBs2PESI\vCDM\):
!!!! Do check again because maybe I checke... - 12:06 PM task #8792 (New): Issues to have in mind for ERMS import
- The functioning of the ERMS import (and PESI export) is explained at: [[Erms_mapping]]
## General information
O... - 01:59 PM Revision d4c6ec84 (cdmlib-apps): ref #8508 minor and cleanup
- 01:56 PM Revision 0d26082d (cdmlib-apps): ref #8509 handle new ERMS quality status "Thematic Editor"
- 01:55 PM Revision bd4c4dee (cdmlib-apps): ref #1444, #8509 fix pipeline handling in ErmsImportActivator
- 01:54 PM Revision 2a2eb365 (cdmlib-apps): ref #1444 replace tu_acctaxon by tu_accfinal
12/24/2019
- 01:52 AM Revision 8419d12a (cdmlib-apps): ref #8508 latest changes to ERMS validation
- 01:51 AM Revision 98d96cf6 (cdmlib-apps): cleanup
- 01:45 AM Revision c44a40e4 (cdmlib-apps): ref #8509 fix taxonStatus export for ERMS
12/23/2019
- 09:37 PM Revision 0cd4c1a9 (cdmlib-apps): cleanup
- 09:36 PM Revision 7373dcf3 (cdmlib-apps): ref #2717 remove publish marker and uuidMisappliedCommonName marker handling because not needed anymore
- 09:32 PM Revision ec9963cf (cdmlib-apps): ref #2717 add 2nd source to EuroMedSourceActivator
- 08:56 PM Revision ea77fefa (cdmlib-apps): ref #1444 handle missing sourceUse
- 08:31 PM Revision 4c575756 (cdmlib-apps): ref #1444 minor changes and cleanup
- 08:30 PM Revision bd1bdb28 (cdmlib-apps): ref #1444 some changes due to upgrade to ERMS v2019
- 08:28 PM Revision e4598bb4 (cdmlib-apps): ref #1444 add new ERMS source and rename old one
- 12:09 PM feature request #8441 (Closed): Add FeatureState class
- I think we can close this ticket.
- 10:00 AM Revision 5d17ab2a (cdmlib-apps): cleanup and move isIgnoreNull from base configurator to BMconfig only
- 09:58 AM Revision cb5cbca9 (cdmlib): remove ignoreNull from ImportConfiguratorBase
12/22/2019
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