Activity
From 12/18/2019 to 01/16/2020
01/16/2020
- 05:11 PM bug #8810 (Feedback): In taxeditor parts without permissions should be disabled
- 03:20 PM bug #8810: In taxeditor parts without permissions should be disabled
- this temporary solution works as expected, but we will need a more complete solution.
This ticket can be closed on... - 01:53 PM bug #8810 (Resolved): In taxeditor parts without permissions should be disabled
- 12:02 PM bug #8810 (Closed): In taxeditor parts without permissions should be disabled
- The user should not be able to edit entities, he/she does not have the permissions for. When checking the permission ...
- 05:09 PM feature request #8805 (Feedback): In distribution editor synoms should be available as concatenated String
- For me no synonyms are shown in the column. I tested on rem_conf_am with classification "Testklass". At least taxon N...
- 02:13 PM feature request #8805 (Resolved): In distribution editor synoms should be available as concatenated String
- Applied in changeset commit:taxeditor|77172e4955db32cfa9193fbbb03ec81aa7851734.
- 05:08 PM Revision a64ae084 (cdm-dataportal): ref #6878 switching to DejaVu sans
- 04:28 PM Revision a2b8e113 (cdm-dataportal): using default font in all page elements
- 03:52 PM bug #8812 (Resolved): Connection losses in taxeditor HTTP invoker (RemoteAccessException: Could not access HTTP invoker remote service at ...)
- A couple of situations exist in which users report problems due to RemoteAccessExceptions ("Could not access HTTP inv...
- 02:12 PM Revision 5915e0b2 (cdmlib): ref #8805: add synonyms to dto for distribution editor
- 02:11 PM Revision 77172e49 (taxeditor): fix #8805: add synonym column to distribution editor
- 02:01 PM feature request #8749: Add proposalProvider to AbstractComboElement
- should we split the ticket and move open issue to 5.13. At least partly it works as far as I remember from vocabulary...
- 01:58 PM feature request #8749 (In Progress): Add proposalProvider to AbstractComboElement
- need to have a look at this topic again
- 02:00 PM feature request #6760 (Worksforme): specimen import configuration
- I don't what this means exactly. When importing e.g DNA samples of already existing specimen, this is correctly attac...
- 01:54 PM bug #8745 (Closed): Type designations of synonyms missing on specimen page
- This is fixed!
- 01:42 PM bug #8745 (Resolved): Type designations of synonyms missing on specimen page
- 01:48 PM feature request #8299 (Closed): add typification column to scientific name and homotypical group in cdm light
- 01:38 PM feature request #8299: add typification column to scientific name and homotypical group in cdm light
- I don't think we should move this. It was probably fixed in 5.12
- 01:35 PM bug #8645 (Resolved): rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
- Applied in changeset commit:taxeditor|8e6b3b25d268778b6fd3e90a28fe1c3fa9a62e3b.
- 01:35 PM Revision 8e6b3b25 (taxeditor): fix #8645: rename OWL Export menu item
- 01:33 PM bug #8780 (Closed): Repair sortindex does not work on TermTree index
- seems to work, now.
- 01:10 PM bug #8790 (In Progress): Update measurement units for existing quantitative data missing a unit
- 01:08 PM task #8672: Source handling during (distribution) aggregation
- This might be partly implemented in 5.12 already. If fully fixed revert milestone to 5.12
- 01:05 PM feature request #8677 (Resolved): Add distribution aggregation to set subtree menu
- Moved open issues to #8811
Review needed for **this** ticket. - 01:04 PM task #8811 (New): Open issues for "Add distribution aggregation to set subtree menu"
- copied from #8677
* disable rank fields in case aggregation should run only on the 1 selected taxon (and not on s... - 12:55 PM bug #8788 (Feedback): Cloned descriptions do not show up in dataportal anymore
- Is this still an open issue? I somehow remember that you have worked on it at the beginning of the year.
- 12:23 PM feature request #6812: Improve TaxEditor download site
- Issues open here?
- 12:19 PM bug #8809 (Closed): CdmLight Export area without level results in NPE
- 11:29 AM bug #8809 (Resolved): CdmLight Export area without level results in NPE
- Applied in changeset commit:cdmlib|5996b524f4493fa800a843769a45061f497e4b1a.
- 11:27 AM bug #8809 (Closed): CdmLight Export area without level results in NPE
- Areas without a level throwing a NPE.
- 12:06 PM Revision fe9e440d (taxeditor): ref #8810: check for taxonnode permission and whether the user has taxon node granted authorities
- 11:33 AM bug #8737 (Closed): delete taxon included in two classifications deletes taxonname
- this works now as expected
- 11:29 AM task #8130: Check if related feature data is cleared when supported facts type is changed
- I guess this is not yet fixed.
- 11:29 AM Revision 5996b524 (cdmlib): fix #8809: fix NPE for areas without level
- 11:24 AM bug #8808 (Closed): Cdm-Light Export fix name identifier export
- I won't review as it takes too much time. I guess feedback from WGB should be enough.
- 11:19 AM bug #8808 (Resolved): Cdm-Light Export fix name identifier export
- 11:17 AM bug #8808 (Closed): Cdm-Light Export fix name identifier export
- mail WB:
Hallo Katja,
noch eine Frage zum (derzeitigen) CDM-light output: Kann es sein, dass in die NameIdentifie... - 11:23 AM EDIT Platform Etablierung task #8722 (Closed): Provide Manuals and Dokumentation for the Kurs „Integrated Taxonomy“ WiSe 2019/20
- 11:23 AM EDIT Platform Etablierung task #8727 (Closed): Test Workshop workflow
- 11:22 AM EDIT Platform Etablierung task #8704 (Closed): Test specimen import via BioCase and write documentation
- 11:20 AM feature request #8759 (Resolved): Description aggregation : suppress state present when more details are available
- please review
- 11:20 AM Revision 834f548a (cdm-dataportal): ref #8759 conditionally supressing state 'present' in description string representations
- 11:00 AM Revision 358e0b7f (cdm-dataportal): ref #8759 conditionally supressing state 'present' in description table
- 10:59 AM Revision dfd71699 (cdm-dataportal): ref #8807 adaptive headers in description table - changing array indexes
- 10:14 AM bug #8797 (Closed): Navigator tree collapse after moving taxon node
- This works as expected now.
- 10:12 AM feature request #8807 (Closed): description page: Adapt table header to the nature of description elements
- 10:12 AM feature request #8807 (Resolved): description page: Adapt table header to the nature of description elements
- Applied in changeset commit:cdm-dataportal|0e414cc1ad6b178dd09a57eed2bd47d25d07677a.
- 09:48 AM feature request #8807 (Closed): description page: Adapt table header to the nature of description elements
ich sehe gerade, dass die Tabelle die Überschrift „States“ hat in der 2. Spalte. Das ist nicht ganz richtig, da d...- 10:12 AM Revision 0e414cc1 (cdm-dataportal): fix #8807 adaptive headers in description table
- 09:59 AM bug #8806: Multiple representations problem on saving Desriptive Data Set
- If this is reproducable it should be fixed soon.
01/15/2020
- 04:55 PM feature request #8759 (In Progress): Description aggregation : suppress state present when more details are available
- 04:39 PM bug #8733: Descriptive data set: Specimens of a newly added taxon are not listed in Select Specimen dialog of the matrix editor
- I updated the ticket description to give some more details on what is did exactly.
Even if there are multiple ways... - 04:33 PM bug #8806 (Worksforme): Multiple representations problem on saving Desriptive Data Set
- This is reproducible each time:
**preparation*
* connect to caryophyllales_spp (version from 2019-12-06) - avai... - 03:18 PM bug #8797 (Resolved): Navigator tree collapse after moving taxon node
- now before refresh the navigator remembers the expanded elements and reopens them after refresh
- 01:48 PM bug #8797 (Feedback): Navigator tree collapse after moving taxon node
- For me the problem still exists. No matter if I use d&d or menu or if I move within a classification or to another cl...
- 03:17 PM Revision 9ffe52d4 (taxeditor): ref #8797: navigator refreshes and opens the expanded elements after moving
- 03:09 PM bug #8511 (Closed): The structure path in the character details view should have a line break
- This works as expected
- 03:00 PM feature request #8805 (Closed): In distribution editor synoms should be available as concatenated String
- For searching for synonym names the distribution editor should have an additional column with the concatenated synonyms.
- 02:24 PM bug #8804 (Worksforme): taxeditor hangs when creating a new classification
- Reproducible with the latest cdm-server and Taxeditor Version: 5.12.0-SNAPSHOT, Build Date: 2020-01-15 **11:50 CET** ...
- 02:06 PM bug #8804: taxeditor hangs when creating a new classification
- I can't reproduce it on my local db. And the recursion seems to be something on library side in PermissionEvaluator
- 01:56 PM bug #8804: taxeditor hangs when creating a new classification
- I tested again locally with another DB where it also occurs ....
will test also on the test server, but this will re... - 01:40 PM bug #8804: taxeditor hangs when creating a new classification
- Can you please test on test/nightly also. This is our reference system for ticket reviews etc. Ofcourse we also need ...
- 01:35 PM bug #8804: taxeditor hangs when creating a new classification
- Andreas Müller wrote:
> I can't reproduce this. Can you give more information. I created classifications in multiple... - 01:17 PM bug #8804: taxeditor hangs when creating a new classification
- I can't reproduce this. Can you give more information. I created classifications in multiple DBs and it worked.
Whic... - 01:08 PM bug #8804: taxeditor hangs when creating a new classification
- I put this into the current milestone since it is really an awful regression.
This issue is really critical and mayb... - 01:05 PM bug #8804 (Worksforme): taxeditor hangs when creating a new classification
~~~
[caryophyllales_spp] 13:04:59,556 DEBUG [qtp759156157-135][or.sp.we.se.DispatcherServlet] - DispatcherServle...- 01:57 PM feature request #8656 (Closed): [DISCUSS] Should only characters be allowed for DescriptiveDataSets/Character Matrix?
- This is fixed with the new implementation.
- 01:50 PM Revision 57aa10c6 (taxeditor): followup to cleanup of taxonNodeDto/UuidAndTitleCache usage
- 01:49 PM Revision 8841d740 (cdmlib): adapted tests for harmonization of taxonnodeDto usage
- 01:48 PM Revision b140cc54 (cdmlib): merge ITaxonNodeService
- 01:44 PM bug #8801 (Closed): Deselected menu items are not reactivated in navigator
- Works as expected now
- 01:43 PM Revision 99f73393 (cdmlib): cleanup taxonnodeDto - UuidAndTitleCache<TaxonNode>
- 01:27 PM Revision a8284340 (taxeditor): ref #8239: disable details, facts and supplemental data for insufficient rights
- 01:21 PM bug #8737: delete taxon included in two classifications deletes taxonname
- Please test on test/caryo_spp. #8804 is not valid for at least this DB (at least on my pc).
- 01:13 PM bug #8737: delete taxon included in two classifications deletes taxonname
- review blocked by #8804
- 01:19 PM bug #8746 (Rejected): Multiple representations problem on saving Matrix Editor
- this MRE did not occur again so far.
- 12:51 PM feature request #7701 (New): Add link to typified name on specimen page of data portal
- this is still an open issue:
http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/occurrence/8236... - 12:46 PM bug #8745 (Feedback): Type designations of synonyms missing on specimen page
- do you have an example link?
- 12:38 PM task #8683 (Closed): TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache
- 12:36 PM bug #8731 (Closed): BioCase Specimenimport: empty result list and SWTException:Invalid thread access in search results
- obviously works since this import has been used very often in the preparation phase for the workshop and in the works...
- 11:46 AM bug #8736 (In Progress): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
- The LIE is apparently fixed but I received another exception:
Server side:
~~~
[caryophyllales_spp] 11:42:48,5... - 11:13 AM feature request #8803 (Resolved): Add "per mm²" to measurement units
- Applied in changeset commit:cdmlib|a65a935cd5279773ac1d32f98e4be04ecd5ea065.
- 11:08 AM feature request #8803 (Closed): Add "per mm²" to measurement units
- This is needed for some Cactaceae characters
- 11:12 AM Revision 6ad1062d (cdmlib): cleanup
- 11:12 AM Revision a65a935c (cdmlib): fix #8803 add per mm² to MeasurementUnit
- 11:12 AM Revision 5675e611 (cdmlib): fix getPage() for deduplication
- 11:12 AM Revision 30df4b0a (cdmlib): cleanup
01/14/2020
- 04:27 PM Revision 207beb84 (cdmlib-apps): cleanup
- 04:23 PM Revision bddc23ae (cdmlib-apps): minor changes to PESI Activators
- 04:15 PM Revision 567f10b2 (cdmlib-apps): latest changes to GreeceImageActivator
- 04:13 PM Revision 3f131c46 (cdmlib-apps): ref #1447 handle null and ERMS pseudo taxa and some minor changes
- 03:56 PM Revision cc5e8c6e (cdmlib): fixing bugs in SwaggerIT and StaticSwaggerApiDoc
- 03:53 PM Revision a3f91025 (cdmlib): fixing bug in descriptions/elementsByType/{classSimpleName} - marker filter was ignored
- 03:21 PM bug #8684 (Closed): ITaxonService.findTaxaByName misses initStrategy Parameter
- 03:21 PM bug #8684: ITaxonService.findTaxaByName misses initStrategy Parameter
- also tested on t edit-test and confirmed that the service is working now
~~~
http http://test.e-taxonomy.eu/cdmse... - 01:56 PM bug #8684 (Resolved): ITaxonService.findTaxaByName misses initStrategy Parameter
- the webservice is now working, tested with:
~~~
http :8081/portal/taxon/doFindByNameParts.json genusOrUninomial=... - 02:06 PM Revision 8867b63b (cdm-dataportal): ref #8771 fixing bug in statistical value processing
- 01:41 PM Revision 76b9084e (cdmlib): ref #8684 fixing bean collection initialization in TaxonDaoHibernateImpl.findTaxaByName
- 11:31 AM feature request #8802 (In Progress): Implement flowering period for Flora of Cyprus
- 11:31 AM feature request #8802 (Closed): Implement flowering period for Flora of Cyprus
- (was "Blütezeiten")
This includes a new DescriptionElement subclass "TermporalData" and a new TimePeriod subclass ...
01/13/2020
- 05:32 PM bug #8684 (In Progress): ITaxonService.findTaxaByName misses initStrategy Parameter
- testing the web service (locally with the caryophlalles_spp database):
~~~
http :8081/portal/taxon/doFindByNamePa... - 05:11 PM bug #8719 (Closed): installation profile 'CDM_Portal' causes Integrity constraint violation: 1048 Column 'pages' cannot be null
- as this problem did no longer occur we can close this issue.
- 05:10 PM task #8716 (In Progress): Configure taxeditor to run with GTK2 in linux
- 05:07 PM feature request #8686 (Closed): Support CdmLink sources in bibliography
- fragment removed from links - closing ticket.
- 05:06 PM Revision cbe9b085 (cdm-dataportal): ref #8686 removing fragment from link
- 04:56 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- By now we are having quite good solution, and I suggest to close this issue. Please move further requirements and wis...
- 04:16 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > 3 Verbesserungsvorschläge:
> >
> Derzeit ist u.A. vor al... - 04:06 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Andreas Müller wrote:
> 3 Verbesserungsvorschläge:
>
> * Avg, StdAbw und Var nur ausblenden bei min=max, wenn Avg... - 04:54 PM Revision 8726bde3 (cdm-dataportal): ref #8771 documenting phpUnit test execution
- 04:49 PM Revision dd80884c (cdm-dataportal): ref #8771 finetuning of statistical values display and more tests
- 04:35 PM Revision 6b99e174 (cdmlib-apps): ref #1447 underscore for parent diff file
- 03:11 PM Revision 0e1b6929 (cdm-dataportal): ignoring all target folders
- 03:11 PM Revision fd411b34 (cdmlib-apps): ref #1447 remove unncessary casts and cleanup
- 03:11 PM Revision 145a5e49 (cdm-dataportal): removing modules/cdm_dataportal/target/
- 03:07 PM Revision c3fb3bba (cdm-dataportal): ref #8771 more test cases
- 02:48 PM Revision a163fed9 (cdmlib-apps): ref #1447 add utf8 to writer
- 02:20 PM Revision 29d3d2ce (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 02:18 PM Revision 7c808239 (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 02:05 PM Revision 778b241c (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 01:52 PM Revision 458948d0 (cdm-dataportal): ref #8771 phpunit improving test suite setup
- 01:22 PM Revision 2e07d351 (cdm-dataportal): ref #8771 phpunit logging in junit xml format - renaming logfile
- 01:08 PM Revision b2ecf616 (cdm-dataportal): ref #8771 phpunit logging in junit xml format
- 08:23 AM Revision 76c0847f (cdm-dataportal): ref #8771 downgrading to phpUnit 5 for backwards compatibility with php5
01/12/2020
- 01:05 AM Revision ab6f97de (cdmlib-apps): cleanup
- 01:02 AM Revision 874a38f5 (cdmlib-apps): ref #8643 fix FaEu destination 2
01/10/2020
- 02:20 PM Revision 2e91751e (cdmlib): ref #1447 add StringComparator
- 01:01 PM Revision b5b0fcf5 (cdmlib-apps): ref #1447 improve PesiFindIdenticalNamesActivator
- 12:38 PM Revision c938072f (cdmlib): ref #1447 fix findIdenticalName function
- 12:07 PM Revision fa9ef8c4 (cdmlib): minor
- 10:55 AM bug #8800 (Closed): If supplemental data view shows reference it is not possible to select another reference
- I could not reproduce this error anymore, so we can close it.
- 10:54 AM bug #8801: Deselected menu items are not reactivated in navigator
- please review
- 10:19 AM Revision 20553b7e (cdmlib-apps): revert wrong merge changes on findIdenticalNameActivator
- 10:10 AM Revision c13878e2 (cdmlib-apps): merge changes
01/09/2020
- 05:29 PM Revision df2eb131 (cdm-dataportal): ref #8771 unit test for significant figures of statistical values
- 05:28 PM Revision fa718a2c (cdm-dataportal): fixing PHPUnit setup for php 7 and documenting its usage with PHPStorm
- 01:17 PM Revision b22a7fb6 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
- 01:17 PM Revision ce7a0180 (cdmlib): smaller changes in ABCD import
- 01:12 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Andreas Müller wrote:
> Die Zeile verstehe ich nicht:
>
> $precision += $precision < 0 ? - 1 : 1;
>
> Waru... - 12:30 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Die Zeile verstehe ich nicht:
$precision += $precision < 0 ? - 1 : 1;
Warum muss die Richtung der Präzision... - 12:04 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Example on test/cactaceae:
http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/descript... - 12:01 PM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit
- Applied in changeset commit:cdm-dataportal|8480271c782d1cce2fffdb4cb95b0f30d9367712.
- 11:47 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Is there an example page available?
- 11:46 AM feature request #8771 (Feedback): display of average value with precision so that it differs from min and max by one digit
- 3 Verbesserungsvorschläge:
* Avg, StdAbw und Var nur ausblenden bei min=max, wenn Avg=min(=max) bzw. StdAbw und Va... - 11:29 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Hallo,
der Fall x=0 ist der Fall min=max. => avg=min(=max). Also trivial, die Dezimalstellen sollten die gleich... - 11:09 AM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- please review
- 11:08 AM feature request #8771 (Resolved): display of average value with precision so that it differs from min and max by one digit
- Applied in changeset commit:cdm-dataportal|793df79047e8716b03d8ba09feeec495d5f410aa.
- 01:08 PM Revision bd04ba61 (taxeditor): fix NPE during exception handling
- 12:53 PM Revision 86fd29ff (cdmlib): ref #1447 change duplicate finding of names from sec to source reference and allow >2 sources
- 12:00 PM Revision 8480271c (cdm-dataportal): fix #8771 removing comment
- 11:08 AM Revision 793df790 (cdm-dataportal): fix #8771 display of average value with minimum amount of significant figures
01/08/2020
- 06:02 PM Revision 2f4646e0 (cdm-dataportal): ref #8786 renaming all min_max_*() functions to statistical_values_*()
- 05:48 PM task #8786 (Resolved): Display of mean value with min max
- Done!
The trivial case where only one value exists or when Min = Max or when TypicalLowerBoundary = TypicalUpperBo... - 03:32 PM task #8786: Display of mean value with min max
- ich habe in der Ticketbeschreibung nochmals alles zusammengefasst
- 03:22 PM task #8786: Display of mean value with min max
- Sieht gut aus.
Kleine Anmerkung: ich bin mir nicht sicher, ob wir immer eine Sample Size haben. Gerade bei de... - 03:22 PM task #8786: Display of mean value with min max
- Hallo,
Könnten wir den bis-Strick jeweils in die Klammer hinein nehmen, das ist die gebräuchlichere Variante?... - 03:21 PM task #8786: Display of mean value with min max
- Achso, ne, wollten wir nicht eckige Klammern um den Mittelwert? Und die Frage steht noch aus, ob in die eckigen Klamm...
- 03:21 PM task #8786: Display of mean value with min max
- um sicher zu gehen, dass wir jetzt wirklich vom Selben sprechen.
Das Beispiel aus der Ticket Beschreibung (1.... - 10:28 AM task #8786: Display of mean value with min max
- Hallo Norbert,
wie gesagt, finde ich unschön, dass es sprachabhängig ist (in einem Deutschen Portal müssten w... - 10:27 AM task #8786: Display of mean value with min max
- Hallo Andreas,
ja, hab ich auch so gefunden, wäre ich auch mit einverstanden. Ich hatte "mean" ausgeschrieben... - 10:27 AM task #8786: Display of mean value with min max
- Hallo,
vielleicht ist „x bar“ x̄ noch besser. Das sollte mathematisch eindeutig sein.
μ wird wohl auch man... - 10:26 AM task #8786: Display of mean value with min max
- Hallo Andreas,
Mittelwert: ja, solche Details der Darstellung hatte wir noch gar nicht besprechen können.
... - 10:25 AM task #8786: Display of mean value with min max
- Hallo,
es kann gut sein, dass die Schreibweise mit dem Mittelwert zwischen den Min und Max Werten nicht abges... - 05:40 PM Revision cd3ea2e8 (cdm-dataportal): ref #8739 updated explanatory text for statistical values
- 05:32 PM Revision 2eb6acb7 (cdm-dataportal): ref #8786 improved display of min, max, mean and other statistical values
- 05:31 PM Revision b736d380 (cdm-dataportal): typos in README
- 03:14 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Eine Funktion zum runden oder trunkieren nach signifikanten Stellen gibt es in php nicht aber in diesem Stackoverflow...
- 02:59 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
Hallo,
der Vorschlag die Differenz Max - Min für die Berechnung der signifikanten Stellen des Mittelwertes ...- 02:57 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Eigentlich ist das entscheidende ja, wie weit min und max von einander entfernt sind. Bei 98-190 reicht eine Zahl ohn...
- 02:56 PM feature request #8771: display of average value with precision so that it differs from min and max by one digit
- Weitere Beispiele für die Ticket-Beschreibung
- 01:29 PM bug #8800 (Resolved): If supplemental data view shows reference it is not possible to select another reference
- Applied in changeset commit:cdmlib|db7b0ee79b966b68a1d2958214303d4b101f1022.
- 12:32 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference
- I checked Walters log-file (see below). So he also got an error in ReferenceDaoHibernateImpl.getUuidAndTitle but in a...
- 12:14 PM bug #8800: If supplemental data view shows reference it is not possible to select another reference
- AM:
Das klingt ein bisschen wie der Fehler den ich gestern mit dem nicht möglichen Aufrufen des Referenzdialoges f... - 09:31 AM bug #8800 (Closed): If supplemental data view shows reference it is not possible to select another reference
- mail WB:
Hallo,
ich habe ein merkwürdiges Problem beim Editieren einer Referenz, und zwar sowohl aus dem Bulk Edi... - 01:28 PM Revision db7b0ee7 (cdmlib): fix #8800 fix NPE in Reference.getUuidAndTitle
- 12:19 PM bug #8801: Deselected menu items are not reactivated in navigator
- Being resolved this can go into 5.12, correct?
- 11:15 AM bug #8801 (Resolved): Deselected menu items are not reactivated in navigator
- 11:15 AM bug #8801: Deselected menu items are not reactivated in navigator
- the problem seems to be that the menu items are submenu items of "edit subtree" and when for all menu items visibilit...
- 09:33 AM bug #8801 (Closed): Deselected menu items are not reactivated in navigator
- mail AM:
noch ein Problem. Wenn ich ein Multiselect auf Taxa im Navigator mache wird das Set for Subtree Menü di... - 11:07 AM Revision caffc76b (taxeditor): ref #8801: disabled submenu items should be visible again
01/07/2020
- 06:19 PM Revision 4f67e0f9 (cdmlib): temporarily ignore SortIndexUpdaterWrapperTest
- 06:19 PM Revision 8b3c844e (cdmlib): cleanup and javadoc
- 04:50 PM feature request #8787: Improve layout for ExactValue on Description Pages
- Andreas Kohlbecker wrote:
> Implemented.
>
> I did not change the separator to semicolon since we are using the ... - 04:35 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages
- Implemented.
I did not change the separator to semicolon since we are using the comma already for separating all ... - 04:30 PM feature request #8787: Improve layout for ExactValue on Description Pages
- implemented in commit:cdm-dataportal|88e622d25
- 03:48 PM feature request #8787 (In Progress): Improve layout for ExactValue on Description Pages
- 03:47 PM feature request #8787: Improve layout for ExactValue on Description Pages
- [norbert wrote]
ich sehe keine Notwendigkeit einen exact value besonders zu kennzeichnen, bin für semikolon-separ... - 03:39 PM feature request #8787 (Feedback): Improve layout for ExactValue on Description Pages
- Rauten stehen nach meinem Verständniss üblicherweise für "Nummer" oder "Anzahl", damit eine "Exact Value" zu kennzeic...
- 04:42 PM feature request #8798 (Resolved): description page: Show character hierarchy
- done
- 01:45 PM feature request #8798 (Resolved): description page: Show character hierarchy
- The hierarchy of the characters in the character tree should be visualized in the description table
- 04:37 PM Revision fa094d60 (cdm-dataportal): ref #8739 table caption to the top an with smaller font
- 04:33 PM Revision 2d78d276 (cdm-dataportal): ref #8787 uncommenting previously implemented improved display of exact values
- 04:16 PM task #8799 (New): [PESI][E+M] [Discuss] Use reference author instead of (sec)-reference for (Species)ExpertName
- Other databases in PESI use only the expert name (e.g. http://www.eu-nomen.eu/portal/taxon.php?GUID=urn:lsid:marinesp...
- 04:02 PM Revision 88e622d2 (cdm-dataportal): ref #8739 indenting description table entries by character hierarchy - bugfix
- 03:42 PM task #8786: Display of mean value with min max
- [Norbert wrote:]
Noch zu der Darstellung der Werte mit Mittelwert. Wenn ich mich richtig erinnere, waren wir uns e... - 02:27 PM Revision 209feb13 (cdm-dataportal): ref #8739 indenting description table entries by chraracter hierarchy
- 01:32 PM Revision e95b14dd (cdm-dataportal): ref #8739 loading missing name for taxa in render_taxon_or_name()
- 12:40 PM Revision 92e522db (cdm-dataportal): ref #8739 description sources in alphabetical order
- 11:59 AM Revision 31d293b1 (cdm-dataportal): ref #8739 description table header left aligned (affects all data portal tables)
- 11:49 AM bug #8774 (In Progress): Reimplement term tree editors to implement the general save strategy
- 11:20 AM Revision a651a0c4 (cdmlib): cdm light fix export of areas without level
01/06/2020
- 05:01 PM Revision 34743ac7 (cdmlib-apps): ref #8508, ref #8577 treeindex test for E+M validation and common base class for E+M and Erms validation
- 04:57 PM Revision bc416076 (cdmlib-apps): ref #1447 cleanup FaunaEuErmsFindIdenticalNamesActivator
- 12:31 PM bug #8797 (Resolved): Navigator tree collapse after moving taxon node
- please review
- 12:28 PM bug #8797 (Closed): Navigator tree collapse after moving taxon node
- mail Nadja:
Liebe alle,
ich habe einen Bug festgestellt, der das Arbeiten extrem verlangsamt:
Verschiebt man... - 12:30 PM Revision b0947131 (taxeditor): ref #8797: only refresh parent node after moving node
- 09:51 AM Revision 50caf951 (cdm-dataportal): remove : from values of default description elements for specimen page
12/28/2019
- 04:10 PM Revision 2eee7850 (cdmlib-apps): ref #1444 minor fixes for ErmsImportActivator
- 04:09 PM Revision 85c9a0d8 (cdmlib-apps): ref #2717 fix sourceFk handling for pure names
- 04:08 PM Revision 19743136 (cdmlib-apps): ref #8508 fix and finalize taxon status (cache) validation
- 11:45 AM Revision 3d6c7bfc (cdmlib-apps): ref #1444, ref #8508, ref #8509 fix ERMS taxon status handling
- 10:48 AM Revision f859201a (cdmlib-apps): ref #8508 further improvements to ERMS validation
12/27/2019
- 11:16 PM Revision 0e601fdc (cdmlib-apps): ref #8509 fix sourceFk handling in PESI taxon export
- 11:14 PM Revision 744bd412 (cdmlib-apps): ref #8509 improve tagged names handling in PESI export (ERMS and others)
- 11:11 PM Revision c0411992 (cdmlib-apps): ref #1444, ref #7976 fix erronous subgenus formatting in ERMS
- 11:09 PM Revision c12d2903 (cdmlib-apps): ref #1444, ref #7976 better logging for unhandled unacceptReason
- 10:49 PM Revision 15d48661 (cdmlib-apps): cleanup
- 04:48 PM task #8796 (New): [PESI][DW] Handling of Taxon.SourceFk
- In SQL Script the Taxon.SourceFk was filled the following way:
* for taxa from ERMS, FauEU and IF it was filled by... - 11:09 AM bug #8508 (In Progress): [PESI][ERMS] ERMS import pipeline validation
- 09:48 AM Revision 2abd2851 (cdmlib-apps): ref #8508 improve treeindex validation and remove source type 'i' handling
- 09:39 AM Revision 8f402cc0 (cdmlib-apps): ref #1444, ref #2871, ref #7976 improve authorship handling for MAN
- 09:37 AM Revision 751d08a3 (cdmlib-apps): ref #1444 remove 2 taxon status checks from ErmsTaxonImportValidator as they are not correct anymore
- - status is now handled via id and tu_accfinal, not via taxonStatus field
- 09:31 AM task #8795 (New): [PESI][DW] CHECK all fields on correct handling of merged data in PESI export
- Sometimes merged data needs to be pipe separated or something else. All fields need to be checked if they handle this...
12/26/2019
- 11:33 PM task #8794 (New): [PESI][Merge]+[DW] Check all SQL scripts related to merging
- Check all SQL script which are not single DB specific on Y:\BDI\PESI\sh\DBs2PESI\vCDM
- 09:12 PM Revision a12e9e83 (cdmlib-apps): ref #2104 remove fixme from unused PesiNoteSourceExport_Old
- 08:07 PM bug #8793 (New): [E+M] In-Ref authors should have full (non-abbreviated) author title without initials
- This is a E+M requirement for nom. ref. formatting
- 07:29 PM Revision dd68b822 (cdmlib-apps): ref #8508 latest changes
- 07:28 PM Revision e706b35f (cdmlib-apps): cleanup
- 07:21 PM Revision 58968197 (cdmlib-apps): ref #1444, ref #7976 improve misapplication handling in ERMS import
- 06:41 PM task #7976 (Closed): [PESI][ERMS] Erms taxon import
- 05:02 PM task #8792: Issues to have in mind for ERMS import
- Open issues from comparing SQL scripts (Y:\BDI\PESI\sh\DBs2PESI\vCDM\):
!!!! Do check again because maybe I checke... - 12:06 PM task #8792 (New): Issues to have in mind for ERMS import
- The functioning of the ERMS import (and PESI export) is explained at: [[Erms_mapping]]
## General information
O... - 01:59 PM Revision d4c6ec84 (cdmlib-apps): ref #8508 minor and cleanup
- 01:56 PM Revision 0d26082d (cdmlib-apps): ref #8509 handle new ERMS quality status "Thematic Editor"
- 01:55 PM Revision bd4c4dee (cdmlib-apps): ref #1444, #8509 fix pipeline handling in ErmsImportActivator
- 01:54 PM Revision 2a2eb365 (cdmlib-apps): ref #1444 replace tu_acctaxon by tu_accfinal
12/24/2019
- 01:52 AM Revision 8419d12a (cdmlib-apps): ref #8508 latest changes to ERMS validation
- 01:51 AM Revision 98d96cf6 (cdmlib-apps): cleanup
- 01:45 AM Revision c44a40e4 (cdmlib-apps): ref #8509 fix taxonStatus export for ERMS
12/23/2019
- 09:37 PM Revision 0cd4c1a9 (cdmlib-apps): cleanup
- 09:36 PM Revision 7373dcf3 (cdmlib-apps): ref #2717 remove publish marker and uuidMisappliedCommonName marker handling because not needed anymore
- 09:32 PM Revision ec9963cf (cdmlib-apps): ref #2717 add 2nd source to EuroMedSourceActivator
- 08:56 PM Revision ea77fefa (cdmlib-apps): ref #1444 handle missing sourceUse
- 08:31 PM Revision 4c575756 (cdmlib-apps): ref #1444 minor changes and cleanup
- 08:30 PM Revision bd1bdb28 (cdmlib-apps): ref #1444 some changes due to upgrade to ERMS v2019
- 08:28 PM Revision e4598bb4 (cdmlib-apps): ref #1444 add new ERMS source and rename old one
- 12:09 PM feature request #8441 (Closed): Add FeatureState class
- I think we can close this ticket.
- 10:00 AM Revision 5d17ab2a (cdmlib-apps): cleanup and move isIgnoreNull from base configurator to BMconfig only
- 09:58 AM Revision cb5cbca9 (cdmlib): remove ignoreNull from ImportConfiguratorBase
12/22/2019
- 11:08 PM Revision 2d7259ef (cdmlib-apps): ref #2717 some updates to PESI export
- 11:06 PM Revision e5364977 (cdmlib-apps): ref #8577 improve E+M export validation
- 11:01 PM Revision 0420a928 (cdmlib): cleanup
12/20/2019
- 04:28 PM bug #8791: Measurement units are not assigned to quantitative data in matrix
- This urgent as the current implementation creates incomplete data that needs to be repaired manually (see #8790)
- 04:17 PM bug #8791 (Closed): Measurement units are not assigned to quantitative data in matrix
- In a first quick fix we should implement it such that if the feature has exactly 1 recommended measurment unit this u...
- 04:16 PM bug #8790 (Closed): Update measurement units for existing quantitative data missing a unit
- This is how to find them:
~~~
SELECT f.id featureId, f.titleCache, mu.id unitId, mu.titleCache unit, deb.*
FROM... - 03:55 PM feature request #8789 (New): How can we semantically handle characters like "partial inflorescence arrangement - distance 1st to 2nd bract"
- This is currently a quantitative character in Cactaceae which uses
structure: partial inflorescence
Property: arr... - 03:26 PM bug #8788 (Feedback): Cloned descriptions do not show up in dataportal anymore
- Problem description:
Das Problem ist, dass hier auf die geclonten (archivierten) Specimen Descriptions verlinkt wi... - 03:01 PM feature request #8787: Improve layout for ExactValue on Description Pages
- This should only be applicable for the specimen pages themselves: http://test.e-taxonomy.eu/dataportal/preview/greece...
- 03:00 PM feature request #8787: Improve layout for ExactValue on Description Pages
- A maybe temporary example ist http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/descriptio...
- 02:56 PM feature request #8787 (Resolved): Improve layout for ExactValue on Description Pages
- Currently formatting is not nice:
A first suggestion from an Email:
Da sollten wir uns... - 02:59 PM bug #8766: Aggregated Descriptions: show Sample size as [$SAMPLE_SIZE]
- Handling for Exact Value is still open, but handled now in own ticket #8787
- 10:08 AM Revision 69019789 (cdmlib): ref #8782: add isDeletable to descriptionService
- 12:31 AM Revision 4a2b3c5b (cdmlib): ref #8469 support reuse of quantitative characters in subbranches
12/19/2019
- 05:14 PM bug #8739 (Resolved): remaining issues for description detail page
- AS far as I see, this ticket is either solved or remaining issues are copied to new tickets.
Therefore I suggest c... - 05:12 PM Revision 753a8083 (cdm-dataportal): ref #8739 description page better and stylable DOM
- 05:08 PM task #8786 (Feedback): Display of mean value with min max
- 05:08 PM task #8786 (Resolved): Display of mean value with min max
> abgesehen davon, dass die Mittelwertangabe zwischen Min und Max unüblich ist, ... Eine bessere Darstellung wär...- 03:59 PM Revision 16ab19f1 (cdm-dataportal): ref #8781 first feature element starts with upper case letter - bug fix
- 03:00 PM feature request #8769 (New): Biocase import configuration should be shown when clicking on import button
- Andreas Kohlbecker wrote:
> I fear that just opening the import config dialog does not really help.
> I suggest to ... - 02:59 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > I find it very useful for debugging that computed description... - 02:28 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- Andreas Kohlbecker wrote:
> I find it very useful for debugging that computed descriptions can be viewed and modifie... - 02:40 PM bug #8785: Move functionality of buttons to context menu of the character matrix
- Katja Luther wrote:
> this should be possible in character matrix. I have to test this.
yes, it should be handled... - 02:35 PM bug #8785 (In Progress): Move functionality of buttons to context menu of the character matrix
- this should be possible in character matrix. I have to test this.
- 11:58 AM bug #8785: Move functionality of buttons to context menu of the character matrix
- Also this one I put to current milestone for same reason as #8784
- 11:58 AM bug #8785 (Resolved): Move functionality of buttons to context menu of the character matrix
- The issue is described in #8784 but I created a new ticket as it is as deleting a specimen description (which is hand...
- 02:30 PM bug #8783: Massive Heap consumption in server instance opening the Description-Matrix editor
- As this is a critical issue I suggest to put it into 5.13. (5.12 is probably not possible as the task is difficult). ...
- 02:23 PM bug #8784: Deleting a specimen description not possible
- fixing the delete handling in deletehandler of the factual data view. Now the deletion of descriptions and descriptio...
- 11:57 AM bug #8784 (In Progress): Deleting a specimen description not possible
- this is already in process because I already found this problem while working on #8782
- 11:54 AM bug #8784: Deleting a specimen description not possible
- I put this into the current milestone because it is a blocker for undoing incorrect/unwanted data entries.
- 11:53 AM bug #8784 (Closed): Deleting a specimen description not possible
- Currently it seems to be impossible to delete a specimen description.
In the specimen LIST editor specimen descrip... - 02:21 PM Revision a776559e (taxeditor): ref #8784: fix deleteHandler for factual data
- 02:21 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
- Looks fine now
- 01:51 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
- Andreas Müller wrote:
> Now the semicolon is missing everywhere, it should be removed ONLY at the end:
>
Proble... - 01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
- An example can be found here: http://test.e-taxonomy.eu/dataportal/preview/greece_bupleurum/cdm_dataportal/taxon/8718...
- 01:19 PM feature request #8781 (Feedback): Descriptions (aggregated): futher improvements
- 01:19 PM feature request #8781: Descriptions (aggregated): futher improvements
- Now the semicolon is missing everywhere, it should be removed ONLY at the end:
The capita... - 02:12 PM Revision bea70813 (cdm-dataportal): ref #8739 labels of CategoricalData and QuatitativeData stylable
- 01:50 PM Revision caf1ed73 (cdm-dataportal): ref #8781 restoring lost semicolons in description element string representations
- 10:20 AM Revision 3db61e83 (cdm-dataportal): ref #8739 description page: improved dom and using stylesheets instead of html tags
- 01:10 AM Revision 6f40bb03 (cdmlib): cleanup
- 01:10 AM Revision e04e5f03 (cdmlib): ref #8469 use correct handling for removeChildNode
- 12:53 AM Revision ca83d76f (cdmlib): ref #8469 add useTaxonHierarchy for PolytomousKeyGenerator
- 12:51 AM Revision e667c033 (cdmlib): ref #8469 fix remove taxon node from taxon for TaxonNode.remove()
- 12:49 AM Revision af44169e (cdmlib): cleanup
12/18/2019
- 05:03 PM Revision ad7fa57c (cdm-dataportal): ref #8739 description page: solving problems with unit display, order and spacing
- 04:38 PM feature request #8471: Computed descriptions should be disabled in TaxEditor
- I find it very useful for debugging that computed descriptions can be viewed and modified in the editor. Can't we all...
- 02:43 PM bug #8783 (Closed): Massive Heap consumption in server instance opening the Description-Matrix editor
This was observed with a locally running cdmlib-remote-webapp instance configured with 700 MB of Heap:
: Delete a description included in a CdmSource should not be possible
- mail AM:
ich habe gerade DescriptionBase gelöscht (aus dem Facts View heraus), die noch verlinkt waren über eine C... - 01:24 PM bug #8780: Repair sortindex does not work on TermTree index
- This should be fixed. Please review.
- 11:57 AM bug #8780 (Resolved): Repair sortindex does not work on TermTree index
- Applied in changeset commit:cdmlib|dad659722b698863a2dee711782748b0de216a71.
- 09:16 AM bug #8780 (Closed): Repair sortindex does not work on TermTree index
- 01:11 PM Revision 7b8c575b (cdmlib): cleanup
- 01:00 PM Revision cc6c7d5e (cdmlib): cleanup
- 01:00 PM Revision 6c143263 (cdmlib): ref #8780 fix autowire issue for repository (workaround)
- 12:47 PM Revision 86f7ea85 (cdmlib): cleanup
- 12:43 PM Revision a483ffcd (cdmlib): ref #8780 test nodes recursive and generic
- 12:42 PM Revision 365cff58 (cdmlib): cleanup
- 12:41 PM Revision a2928800 (cdmlib): fix ConcurrentSessionTest testdata
- 12:21 PM feature request #8781 (Resolved): Descriptions (aggregated): futher improvements
- ticket complete
- 12:08 PM feature request #8781 (Closed): Descriptions (aggregated): futher improvements
- Hallo Andreas,
1. am Ende der aggregated descriptions gibt es derzeit im noch ein überflüssiges Komma. Könntest du... - 12:20 PM Revision 2bc2b13e (cdm-dataportal): ref #8781 first feature element starts with upper case letter
- 12:18 PM Revision e425fd81 (cdmlib): cleanup
- 12:17 PM Revision 1d287b23 (cdmlib): ref #8780 reduce test dataset
- 12:09 PM Revision 2e5f796f (cdm-dataportal): ref #8781 removing semicolon from end of description
- 11:59 AM Revision 3076588b (cdmlib): ref #8780 add SortIndexUpdaterWrapperTest for term nodes
- 11:58 AM Revision b171b803 (cdmlib): ref #8780 cleanup SortIndexUpdaterWrapper
- 11:58 AM Revision 386112b5 (cdmlib): replace featureTreeService by termTreeService
- 11:57 AM Revision 0a165781 (cdmlib): cleanup
- 11:46 AM Revision 87aa88d6 (cdm-dataportal): ref #8739 aggregated description feature block: explainig bracketed numbers
- 11:22 AM feature request #7981 (In Progress): Add configuration UI for matrix description aggregation
- 11:21 AM Revision 6722d9a5 (cdm-dataportal): ref #8739 description page: explainig bracketed numbers
- 09:47 AM Revision 1da7de81 (cdmlib): ref #8780 cleanup
- 09:47 AM Revision dad65972 (cdmlib): fix #8780 fix term node sortindex updater (TermNode->TermRelation)
- 09:36 AM Revision 558d4b79 (cdmlib): cleanup
- 09:26 AM Revision 61cfb399 (cdmlib): cleanup
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