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From 05/31/2023 to 06/29/2023

06/29/2023

02:18 PM bug #10365 (Resolved): Selecting NamedArea tree in distribution preference does not work for distribution editor
This should be fixed. Please review. Katja Luther
02:02 PM Revision 2e716bfb (cdmlib): ref #10365: use getTermcollectionDto
Katja Luther
01:38 PM Revision 9a61077d (taxeditor): ref #10365: termTrees should be usable in term selection wizards
Katja Luther
01:34 PM Revision 62c4f1d4 (cdmlib): ref #10365: adapt termDtos to use trees similar to vocabularies in
editor Katja Luther
01:03 PM feature request #10351 (Duplicate): Geosearch with full taxon tree result, eventually printer friendly
Andreas Müller
12:56 PM bug #10366 (New): Adapt advanced search to use area tree
Since the mosses import the advanced search does not look nice anymore: https://www.europlusmed.org/cdm_dataportal/se... Andreas Müller
12:37 PM task #10356 (In Progress): Combine Caryophyllales data portals
Andreas Müller

06/28/2023

10:17 AM Revision 55f00b28 (cdm-dataportal): fix doi handling for dto pages
Katja Luther
06:55 AM task #10324: Export Caucasus data
Excluded nodes:
~~~
SELECT tn.id, tn.UUID, treeIndex, n.nameCache
FROM TaxonNode tn INNER JOIN TaxonBase tb ON tb.id ...
Andreas Müller
12:00 AM task #10324: Export Caucasus data
Remove import sources does not work yet Andreas Müller

06/27/2023

05:23 PM task #10324: Export Caucasus data
Available languages for common names:
~~~
SELECT deb.language_id, lang.titleCache, lang.uuid, COUNT(*) AS n
FROM...
Andreas Müller
02:41 PM bug #10365: Selecting NamedArea tree in distribution preference does not work for distribution editor
Setting to highest as this is a regression. Andreas Müller
02:38 PM bug #10365 (Closed): Selecting NamedArea tree in distribution preference does not work for distribution editor
When selecting a tree for the distribution area preference does not work for the distribution editor. The selection d... Katja Luther
01:25 PM feature request #10361 (Resolved): Managed terms and term collections should not be editable in taxeditor
This should be fixed. Katja Luther
01:23 PM Revision 8c77d16e (taxeditor): Merge branch 'develop' of ssh://git@dev.e-taxonomy.eu/var/git/taxeditor.git into develop
Katja Luther
01:22 PM Revision 7fbf0934 (taxeditor): ref #10336: supplemental data of managed terms shouldn't be editable
Katja Luther
01:21 PM Revision ad7d7209 (cdmlib): ref #10335: adapt character node dto
Katja Luther
01:14 PM feature request #2975: Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Also handle value in aggregation and key generation (how exactly?) Andreas Müller
01:14 PM feature request #2975: Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Andreas Müller wrote in #note-17:
> Also add evaluate field for QuantitativeDataFormatter and CategoricalDataFormatt...
Andreas Müller
11:52 AM feature request #2975: Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Also add evaluate field for QuantitativeDataFormatter and CategoricalDataFormatter. Andreas Müller
10:27 AM feature request #2975: Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
NoK:
wir hatten das Thema auch schon mehrfach in Additivity. Bei einer teilausgefüllten Matrix ist es misslich, da...
Andreas Müller
12:29 PM Revision 7587335a (cdmlib): ref #10361: add null check to avoid NPE
Katja Luther
12:09 PM feature request #10364 (Closed): Implement state modifiers for matrix
Currently state modifiers can only be edited in details view (see also #10340) but it is also necessary to edit them ... Andreas Müller
11:59 AM bug #10363 (Feedback): Find a solution for importing all shared preferences in a new eclipse installation
Currently we use the Remote Workspace Preferences Plugin, but for the newest eclipse version this does not work anymo... Katja Luther
11:53 AM feature request #10362 (Closed): Implement noDataStatus in matrix and details view
The enumeration was added with #2975 (not yet pushed).
For now it should be implemented such that the enumerated s...
Andreas Müller
11:26 AM Revision c5f6f874 (cdmlib): cleanup
Andreas Müller

06/26/2023

07:24 PM feature request #10335 (Closed): Allow editing supplemental data for TermNodes
Andreas Müller
06:12 PM feature request #10335: Allow editing supplemental data for TermNodes
Andreas Müller wrote in #note-28:
> Only created is shown, not updated.
this is fixed now.
Katja Luther
07:20 PM Revision 876c62e8 (taxeditor): cleanup
Andreas Müller
06:12 PM Revision ff9c6b15 (taxeditor): ref #10335: show always updated informations
Katja Luther
06:11 PM Revision 525c1113 (cdmlib): ref #10335: saving termnode changes need call of saveOrUpdate
Katja Luther
02:20 PM Revision 2435302b (taxeditor): ref #10361: disable managed terms and term collections
Katja Luther
02:19 PM Revision 363e92f4 (cdmlib): ref #10361: add isManaged to termbase dtos
Katja Luther
01:45 PM feature request #2975: Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
WGB:
Es kommt vor (z.B. wenn der Typus das einzige Exemplar einer Art ist), dass man effektiv nicht weiß, auf welc...
Andreas Müller
01:44 PM feature request #2975 (In Progress): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Reopen to allow using an enum, not only a single bit. Andreas Müller
11:17 AM feature request #10361: Managed terms and term collections should not be editable in taxeditor
I added the transient method isManaged() to all TermBase Andreas Müller
11:14 AM feature request #10361 (Closed): Managed terms and term collections should not be editable in taxeditor
They can be recognized by calling TermBase.isManaged(). This holds for DefinedTermBase and TermCollection including T... Andreas Müller
11:16 AM Revision a274e0db (cdmlib): ref #10361 add isManaged to managed terms
Andreas Müller
11:05 AM Revision 8516ae4d (cdmlib): cleanup
Andreas Müller
11:05 AM Revision d16a08e8 (cdmlib): ref #9771 fix Character.propertey and .ratioToStructure handling
Andreas Müller
10:43 AM bug #10360 (Resolved): Correct Name in Source display in portal
This should be fixed. I will update the test instance of euro + med, then you can review. Katja Luther
10:41 AM bug #10360 (Closed): Correct Name in Source display in portal
The name in source should be shown only in bibliography and only the epithet should be in italics (dto page). Katja Luther
10:42 AM Revision a690d6d5 (cdm-dataportal): ref #10360: correct display of name in source in dto page
Katja Luther

06/23/2023

05:09 PM Revision bcb26840 (cdmlib): ref #10318: add missing base class
Katja Luther
04:40 PM Revision fa85a482 (taxeditor): ref #10318: adapt termnode suppl. data to changes in dto
Katja Luther
04:39 PM Revision 70e950a8 (cdmlib): ref #10318: code cleaning and add updated informations to dtos
Katja Luther
04:29 PM task #10359 (New): Integrate Vienna common names into E+M
Waiting for API link...
Reconciliation service avaiable at: https://bioling.acdh.oeaw.ac.at/reconcile . Many names...
Andreas Müller
02:19 PM feature request #10354: Show term data in term node details view
AM:
es werden jetzt bei NamedAreas trotzdem inapplicableIf und so angezeigt, was nicht dahin gehört. Außerdem ist ...
Andreas Müller
01:29 PM feature request #10354 (In Progress): Show term data in term node details view
Andreas Müller
01:30 PM feature request #10335 (Feedback): Allow editing supplemental data for TermNodes
Only created is shown, not updated. Andreas Müller
12:17 PM feature request #10335 (Resolved): Allow editing supplemental data for TermNodes
Andreas Müller wrote in #note-26:
> Editing now fully works. Only the created/updated information is still missing.
...
Katja Luther
12:55 PM bug #10358: Remove supportsTextData for Characters
After release existing data should be checked (and corrected) by
~~~
SELECT dtb.DTYPE, created,dtb.id, dtb.title...
Andreas Müller
12:53 PM bug #10358 (Resolved): Remove supportsTextData for Characters
Applied in changeset commit:cdmlib|28c28ef158dd15836e745c78978b976d57d01eb6. Andreas Müller
12:51 PM bug #10358 (Closed): Remove supportsTextData for Characters
A Character should not supportTextData as it is used in StructuredDescriptiveData context. Currently, supportsTextDat... Andreas Müller
12:53 PM Revision 28c28ef1 (cdmlib): fix #10358 disable supportsTextData for Characters
Andreas Müller
11:58 AM Revision 1cc608d6 (taxeditor): ref #10318: add created/createdBy to supplemental data of term nodes
Katja Luther
11:56 AM Revision db09e264 (cdmlib): ref #10318: add created and createdBy to Dtos
Katja Luther
11:12 AM Revision c9de7555 (cdm-dataportal): adapt tests
Katja Luther
10:55 AM Revision 3cf1952a (cdm-dataportal): adapt tests
Katja Luther

06/22/2023

11:27 PM Revision 6c719fde (cdmlib): ref #9771 add delete option for created and updated
Andreas Müller
11:27 PM Revision dffd2d5d (cdmlib): ref #9771 add handling for externally managed
Andreas Müller
04:59 PM task #10356: Combine Caryophyllales data portals
AM:
jetzt noch Identifier. Grundsätzlich wäre es sehr gut, eine Liste zu haben mit Identifiern und Links die schri...
Andreas Müller
04:56 PM bug #10357: CDMLight fix handling for names used as synonym and accepted taxa
Mails before fix:
KL:
Ich habe den Fehler gefunden, in der Tabelle HomotypicGroup steht:
~~~
= <i>Oncostema</i> <i...
Andreas Müller
01:50 PM bug #10357 (Resolved): CDMLight fix handling for names used as synonym and accepted taxa
Fixed this by checking the accepted taxon of a synonym, if it is the actual processed accepted then the synonym is us... Katja Luther
01:48 PM bug #10357 (Closed): CDMLight fix handling for names used as synonym and accepted taxa
mail ERS:
Hallo,
ich habe gerade versucht, für die Gattung Oncostema Raf. einen cdm-light Output aus Euro+Med ...
Katja Luther
02:52 PM Revision e2a2dae9 (cdm-dataportal): ref #10322: fix error messages
Katja Luther
02:09 PM Revision a28575d6 (cdm-dataportal): ref #10322: fix error messages
Katja Luther
01:51 PM Revision 42e5a139 (cdmlib): ref #10357: check whether synonym belongs to the actual accepted taxon
Katja Luther
12:20 PM Revision e77cd15b (cdm-dataportal): adapt order of references with originalInfo
Katja Luther
11:53 AM Revision 1dbb0a6a (cdm-dataportal): adapt order of references
Katja Luther
11:14 AM Revision 8088118c (cdm-dataportal): adapt handling of original information and name in source
Katja Luther
09:35 AM Revision 2a2460f5 (cdm-dataportal): adapt cich portal test to new reference formatting (cont.)
Andreas Müller

06/21/2023

11:28 PM task #10356 (Closed): Combine Caryophyllales data portals
For this we clone all genus taxa (they are all published) to a separate branch and move all unpublished species (taxa... Andreas Müller
11:06 PM Revision a2cdcced (cdm-dataportal): adapt cich portal test to new reference formatting
Andreas Müller
11:06 PM Revision 9bf6c39b (cdm-dataportal): cleanup
Andreas Müller
10:42 PM Revision 7691f1da (cdmlib): ref #10322 add originalInfo to sourceDto
Andreas Müller
04:31 PM feature request #10318 (Closed): Add modifier vocabularies from Endara et al
Andreas Müller
03:34 PM feature request #9771: Implement Cdm2Cdm for vocabularies
And make Test running in suite Andreas Müller
02:24 PM Revision e0498bb5 (cdm-dataportal): fix deduplication of footnotes
Katja Luther
01:56 PM Revision 56a0f188 (cdmlib): code cleaning
Katja Luther
01:29 PM Revision 25b225f7 (taxeditor): minor
Katja Luther
01:22 PM Revision 7ffff550 (cdmlib): code cleaning
Katja Luther
01:00 PM Revision 454ed42c (taxeditor): Revert "add unimplemented method"
This reverts commit 8613a7bde57398e005c807c4cffc79443cdba718. Katja Luther
12:56 PM Revision 88963b21 (taxeditor): Merge branch 'develop' of ssh://git@dev.e-taxonomy.eu/var/git/taxeditor.git into develop
Katja Luther
12:36 PM feature request #10335 (Feedback): Allow editing supplemental data for TermNodes
Editing now fully works. Only the created/updated information is still missing. Andreas Müller
12:04 PM bug #10355 (Closed): Caryophyllales Mexico and Caryophyllales Caryophyllales not usable with clean urls
Currently the two portals https://caryophyllales.org/mexico and https://caryophyllales.org/caryophyllales link to the... Katja Luther
10:39 AM Revision c31195af (taxeditor): changes in FormFactory for showing term details in termnode details view
Katja Luther
10:16 AM Revision e76959d0 (taxeditor): show term details in termnode details view
Katja Luther
10:07 AM Revision 33fb8230 (cdmlib): ref #9771 handle incomplete vocabularies during graph import
Andreas Müller
09:42 AM Revision 92daa639 (cdmlib): ref #9771 add Character handling (cont.)
Andreas Müller
09:38 AM feature request #10133 (Resolved): Improve ontology state vocabularies
Andreas Müller

06/20/2023

08:34 PM Revision 6a806a93 (cdmlib): cleanup
Andreas Müller
08:34 PM Revision e966ccba (cdmlib): ref #9771 add Character handling
Andreas Müller
07:11 PM task #10322: Use DTOs for portal taxon page (cont.)
Katja Luther wrote:
> * the sourceDto also needs the uuid of the reference to provide the correct uuid for "link to...
Andreas Müller
07:09 PM Revision 2fc4ac4e (cdmlib): ref #10322 add referenceUuid to SourceDto
Andreas Müller
04:36 PM Revision e9c66407 (cdmlib): ref #9771 remove flush for saveAll and saveOrUpdateAll
Andreas Müller
04:35 PM Revision 5430d021 (cdmlib): ref #9771, ref #10133 add state term lists to ontology vocabulary
Andreas Müller
04:34 PM Revision de9a7928 (cdmlib): ref #10320, ref #9771 fixes for Cdm2CdmImportBase
Andreas Müller
03:44 PM Revision d2b165a7 (cdmlib): cleanup
Andreas Müller
01:37 PM Revision bdf65acb (cdm-dataportal): ref #10302: adapt to distribution as DTOs in standard view - continue
Katja Luther
01:03 PM Revision 75332b27 (cdm-dataportal): ref #10302: adapt to distribution as DTOs in standard view - continue
Katja Luther
12:53 PM Revision c870b267 (cdm-dataportal): ref #10302: adapt to distribution as DTOs in standard view - continue
Katja Luther
12:43 PM feature request #10354 (Closed): Show term data in term node details view
copied from #9697
Term data should be visible in the details view of a term node in term tree editing. But they sh...
Andreas Müller
12:38 PM feature request #10353 (New): Implement supplemental data editing for term trees
copied from #9697
as a first step we could show atleast created/updated and id/uuid
Andreas Müller
12:33 PM Revision 012d4ea3 (cdm-dataportal): ref #10302: adapt to distribution as DTOs in standard view - continue
Katja Luther
12:31 PM feature request #9643 (Rejected): New menu in term tree editor should have alternatives for flags
Not so important and difficult to implement due to number of combinations Andreas Müller
11:51 AM Revision 9958f440 (cdm-dataportal): ref #10302: adapt to distribution as DTOs in standard view
Katja Luther

06/19/2023

03:51 PM Revision 6c90f3ae (cdmlib): Revert "Revert "ref #10322 by default use distribution treeDto""
This reverts commit 9d0e7f1b638ba62b1d89a803f53881651b4fa888. Andreas Müller
03:43 PM feature request #10178: Implement fuzzy name matching
All points described by Rees for fuzzy name matching are included except Authors (to be discussed). The algorithm use... Belen Escobari
02:55 PM Revision f0b94864 (cdmlib): ref #10178: query only genus, returns all species
Belen Escobari
11:24 AM Revision fffbf62f (cdmlib): ref #10178: Tests "not exact matches"
Belen Escobari
10:23 AM Revision 31fc2ce7 (cdmlib): ref #10178: fuzzy name searching without Authors
Belen Escobari

06/16/2023

04:37 PM Revision d5f42e6b (cdmlib-apps): adapt version in app-import
Andreas Müller
02:37 PM bug #10352 (New): Changing nom ref in freetext editor and moving name without saving results in missing reference
mail ERS:
ein ungewöhnlicher Fehler, der euch vielleicht interessiert:
wenn ich im Freitexteditor an der nomenk...
Katja Luther
02:19 PM task #4009: consider using jackson as json library
The taxeditor is json-lib free now. Katja Luther
02:01 PM Revision 190b0534 (taxeditor): ref #4009: remove json-lib from build.properties
Katja Luther
02:01 PM Revision ec145531 (taxeditor): ref #4009: remove json-lib from pom and Manifest
Katja Luther
02:00 PM Revision 182591d5 (taxeditor): ref #4009: continue removing json-lib from Taxeditor - adapt
cdmServerInfo Katja Luther
09:51 AM task #10324: Export Caucasus data
MM:
Georgia is reported among distribution for Abies nordmanniana (Steven) Spach without reference. The references...
Andreas Müller
09:36 AM task #10324: Export Caucasus data
ERS:
we did not discuss endemism yesterday. Data on endemism will be important for each checklist.
Which data o...
Andreas Müller
09:44 AM feature request #10351: Geosearch with full taxon tree result, eventually printer friendly
We need to discuss how this should be best implemented. On one side we should generally add a filter for higher taxa... Andreas Müller
09:41 AM feature request #10351 (Duplicate): Geosearch with full taxon tree result, eventually printer friendly
ERS:
im alten E+M-Portal sah die Geo-Suche so aus (und war erst in einem 2. Schritt sichtbar, wenn man schon ein T...
Andreas Müller

06/15/2023

03:32 PM feature request #10335 (Resolved): Allow editing supplemental data for TermNodes
The last commit was reverted, so I think now the ticket should be fixed. Katja Luther
10:41 AM feature request #10335 (Feedback): Allow editing supplemental data for TermNodes
Unfortunately still open as the NPE fix was accidentally reverted. Andreas Müller
02:43 PM Revision 5be101a1 (taxeditor): remove "import vocabulary" because no import available
Katja Luther
02:40 PM Revision 14e35615 (taxeditor): rename GFBio Term Import to Search continue
Katja Luther
02:37 PM Revision 9ea30b0f (taxeditor): rename GFBio Term Import to GFBio Term Search
Katja Luther
01:53 PM Revision 11651c04 (taxeditor): ref #4009: adapt Term Import to jackson
Katja Luther
11:26 AM Revision df617ad6 (taxeditor): ref #4009: add MANIFEST changes to provide jackson library
Katja Luther
11:20 AM Revision 37ad7062 (taxeditor): ref #3440: replace json-lib in biocase provider search
Katja Luther
11:04 AM Revision a70cdf6d (cdm-server): ref #8118 update mysql driver and spring schema version in templatesdatasources.xml for cdmserver
Andreas Müller
10:48 AM Revision 03927c17 (cdmlib): after reverting the last commit, add the actual changes again.
Katja Luther
10:44 AM Revision e424f9fe (cdmlib): Revert "remove unreachable code"
This reverts commit e173c7df9be281cf0ae131161e83587f7a3d0132. Katja Luther
10:16 AM feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy
still need to cleanup code and copy remaining issues. Andreas Müller
10:14 AM feature request #10350 (New): Implement distribution algorithms to work with Tu, Tu(E) and Tu(A) in Euro+Med
The handling for the areas Tu, Tu(E) and Tu(A) in the area tree is difficult. As Tu(E) is clearly in Europe and Tu(A)... Andreas Müller
09:42 AM feature request #10349 (New): Add Gr+AE(G), Eg+Sn und Russian areas for mosses to the E+M shapefile
This is an open issue for the mosses integration.
This should be done together with #9367 (baltic states).
Moss...
Andreas Müller
08:49 AM bug #10346 (Closed): Bugs in E+M dataportal 5.38
Andreas Müller

06/14/2023

11:13 PM task #10324 (In Progress): Export Caucasus data
Andreas Müller
10:11 PM Revision 9c23eca2 (cdmlib-apps): ref #10324 add destinations and activator for caucasus exports
Andreas Müller
06:43 PM feature request #10335: Allow editing supplemental data for TermNodes
Andreas Müller wrote in #note-18:
> Andreas Müller wrote in #note-16:
> > Now, no NPE is thrown anymore, but when I...
Katja Luther
06:42 PM feature request #10335 (Resolved): Allow editing supplemental data for TermNodes
Katja Luther
06:14 PM feature request #10348: Handle term synonyms in CDM
AM (during ontology review #10133):
Bei den Synonymen müssen wir nochmal überlegen, wie wir die im Model unterbrin...
Andreas Müller
06:13 PM feature request #10348 (New): Handle term synonyms in CDM
Especially in the descriptive data part (ontology) there are many terms having synonyms. Currently the CDM does not a... Andreas Müller
05:30 PM Revision 5c594834 (cdm-server): Merge branch 'release/5.39.0' into develop
jenkins
05:30 PM Revision 82e6d41e (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
05:29 PM Revision 5a9e945f (cdm-server): updating poms for branch'release/5.39.0' with non-snapshot versions
jenkins
05:29 PM Revision 7bebe16a (cdm-webapp): Merge branch 'release/5.39.0' into develop
jenkins
05:29 PM Revision d8be99c6 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
05:28 PM Revision 5f930b8e (cdm-webapp): updating poms for branch'release/5.39.0' with non-snapshot versions
jenkins
05:28 PM Revision c48837b8 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.39.0
jenkins
05:28 PM Revision e365e399 (cdm-vaadin): Merge branch 'release/5.39.0' into develop
jenkins
05:28 PM Revision abe5fd30 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
05:28 PM Revision f544dd27 (taxeditor): Merge branch 'release/5.39.0' into develop
jenkins
05:28 PM Revision 10ecd7fa (taxeditor): Merge branch 'release/5.39.0'
jenkins
05:25 PM Revision b05504e1 (cdm-dataportal): Merge branch 'release/5.39.0' into develop
jenkins
05:25 PM Revision 00da66d2 (cdm-dataportal): updating poms for branch'release/5.39.0' with non-snapshot versions
jenkins
05:25 PM Revision 93f7a77a (cdm-vaadin): updating poms for branch'release/5.39.0' with non-snapshot versions
jenkins
05:25 PM Revision 1a36279e (cdm-dataportal): release-preparation: production level css
jenkins
05:25 PM Revision 45d908b8 (cdm-vaadin): jenkins bumping cdmlib.version to 5.39.0
jenkins
05:24 PM Revision 08e25085 (cdmlib): Updating develop poms back to pre merge state
jenkins
05:24 PM Revision 32f0a1ff (cdmlib): Merge branch 'master' into develop
jenkins
05:24 PM Revision bbf15289 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
05:24 PM Revision 68bfb080 (cdmlib): Merge branch 'release/5.39.0'
jenkins
05:12 PM Revision eb289d03 (cdmlib): updating poms for branch'release/5.39.0' with non-snapshot versions
jenkins
05:05 PM Revision 1d56b077 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.39.0-SNAPSHOT
jenkins
05:04 PM Revision 0458d280 (cdm-webapp): updating poms for 5.40.0-SNAPSHOT development
jenkins
05:04 PM Revision f8543bf0 (cdm-webapp): updating poms for 5.39.0 branch with snapshot versions
jenkins
05:04 PM Revision 00c765ab (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.40.0-SNAPSHOT
jenkins
05:03 PM Revision 4bf00390 (taxeditor): Updated version in pom / project files to taxeditor version : 5.40.0-SNAPSHOT and cdmlib version : 5.40.0-SNAPSHOT
jenkins
05:03 PM Revision f57425f8 (taxeditor): Updated version in pom / project files to taxeditor version : 5.39.0 and cdmlib version : 5.39.0
jenkins
05:03 PM Revision 427e8053 (cdm-vaadin): jenkins bumping cdmlib.version to 5.39.0-SNAPSHOT
jenkins
05:02 PM Revision bff9618d (cdm-vaadin): updating poms for 5.40.0-SNAPSHOT development
jenkins
05:02 PM Revision fc0c95e0 (cdm-vaadin): updating poms for 5.39.0 branch with snapshot versions
jenkins
05:02 PM Revision 55ba75d9 (cdm-vaadin): jenkins bumping cdmlib.version to 5.40.0-SNAPSHOT
jenkins
05:02 PM Revision 85546f43 (cdm-dataportal): updating poms for 5.40.0-SNAPSHOT development
jenkins
05:02 PM Revision dcaa4258 (cdm-server): updating poms for 5.40.0-SNAPSHOT development
jenkins
04:58 PM Revision 16562146 (cdmlib): updating poms for 5.40.0-SNAPSHOT development
jenkins
04:56 PM feature request #10327 (Closed): IUCN condensed distribution configuration
Andreas Müller
04:54 PM bug #10346 (Resolved): Bugs in E+M dataportal 5.38
This should be fixed and can be closed (but adapt portal before). Andreas Müller
11:37 AM bug #10346 (In Progress): Bugs in E+M dataportal 5.38
I move EUR handling for mosses to #10326 Andreas Müller
04:52 PM feature request #10347: Implement et al. for names in taxon search result
The relevant methods are TaxonListController.doFind() and TaxonServiceImpl.findTaxaAndNames(config).
Andreas Müller
04:48 PM feature request #10347 (New): Implement et al. for names in taxon search result
copied from #10346
via etAlPos parameter similar to #10336
Andreas Müller
04:21 PM task #10326 (In Progress): EuroMed mosses remaining issues
Update areas:
~~~
SELECT deb.id, deb.area_id, deb.createdBy_id, deb.created, deb.feature_id, deb.DTYPE, deb.inDes...
Andreas Müller
01:14 PM Revision 9d0e7f1b (cdmlib): Revert "ref #10322 by default use distribution treeDto"
This reverts commit 2e46c8021c5ce6276203860af3f9e1652c4759b9. Andreas Müller
11:49 AM bug #7107 (Discussed): "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
Andreas Müller
11:49 AM bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
Emails via "TSWG L2" search Andreas Müller
11:16 AM feature request #9502 (Resolved): Implement subarea preference rule and fallback areas for areas with complex hierarchy
This is probably fully fixed (except for the new issue of Tu which should go to another ticket). Andreas Müller
10:44 AM Revision 71b97524 (cdmlib): ref #9502 remove tests without value (computed marker)
Andreas Müller
09:58 AM bug #10306 (Worksforme): Layout: Not all functions in Vaadin available
I have no idea what happened. For some time I had major problems with data input.
Currently, I am using PhycoBank da...
Wolf-Henning Kusber
02:37 AM Revision ec4f182d (cdmlib): ref #9502 try to implement multiple parents for CondensedDistributionComposer (fix Cuba tests and some cleanup)
Andreas Müller
02:15 AM Revision 8ac72493 (cdmlib): ref #9502 fix handling for multiple parents in distribution filter (continue fix)
Andreas Müller
02:00 AM Revision cfaa3fc2 (cdmlib): ref #9502 try to implement multiple parents for CondensedDistributionComposer (still needs cleanup)
Andreas Müller
01:58 AM Revision fadae8f5 (cdmlib): ref #9502 fix handling for multiple parents in distribution filter (try to fix test)
Andreas Müller

06/13/2023

05:16 PM Revision 4f6fd566 (cdmlib): cleanup
Andreas Müller
03:58 PM feature request #10341: Add source type "internal"
Adapted the comparator for OriginalSourceType, now PrimaryTaxonomicSource, PrimaryMediaSource are always the first tw... Katja Luther
03:41 PM Revision 87c8afe7 (taxeditor): ref #10341: adapt comparator
Katja Luther
12:35 PM Revision 3eb66b32 (cdmlib): cleanup
Andreas Müller
12:34 PM Revision f426088c (cdmlib): ref #9502 fix handling for multiple parents in distribution filter
Andreas Müller
10:45 AM Revision 02d8cf93 (cdmlib): ref #9502 add second method for loading distribution tree based on term tree (incl. annotations) - fix NPE
Andreas Müller
10:13 AM Revision b0b71d13 (cdmlib): ref #9502 add second method for loading distribution tree based on term tree (incl. annotations)
Andreas Müller
09:55 AM Revision fbbc99e4 (cdmlib): Allow retrieving a map for terms included in a term tree
Andreas Müller
09:48 AM feature request #10335: Allow editing supplemental data for TermNodes
Andreas Müller wrote in #note-16:
> Now, no NPE is thrown anymore, but when I store an annotation with no type the t...
Andreas Müller
09:47 AM feature request #9771 (Resolved): Implement Cdm2Cdm for vocabularies
This is more or less implemented. But check comment on problems with users above.
And create new ticket for issues...
Andreas Müller
09:43 AM feature request #10327: IUCN condensed distribution configuration
finetuning should be implemented now and ticket can be closed after final review. Andreas Müller
09:43 AM feature request #10327: IUCN condensed distribution configuration
ERS: zu IUCN
es geht mir vor allem um die Lesbarkeit für die möglicherweise unbedarften Nutzer. Der String sollte ...
Andreas Müller
09:41 AM Revision 50f77133 (cdmlib): ref #10346, ref #10327 fine tuning for IUCN cond distr str for subarea handling
Andreas Müller

06/12/2023

10:54 PM Revision ad4ee235 (cdmlib): cleanup
Andreas Müller
07:06 PM Revision ffe8e47c (cdmlib): cleanup
Andreas Müller
06:44 PM Revision 777ad2c3 (cdmlib): cleanup
Andreas Müller
05:43 PM bug #10346: Bugs in E+M dataportal 5.38
ERS: zu IUCN
es geht mir vor allem um die Lesbarkeit für die möglicherweise unbedarften Nutzer. Der String sollte ...
Andreas Müller
02:50 PM bug #10306 (Feedback): Layout: Not all functions in Vaadin available
Andreas Müller
02:50 PM bug #10306: Layout: Not all functions in Vaadin available
It is a bit unclear what really needs to be done here. Can you summerize how the expected behavior should look like a... Andreas Müller
02:44 PM bug #10339: Array to string conversion in check_plain() method on synonym page
This is not shown anymore as it was fixed as far as I remember. If this ticket should stay open can you add some more... Andreas Müller
02:42 PM Revision 3963d2c1 (taxeditor): ref #10335: fix NPE for annotations without type
Katja Luther
12:46 PM Revision dde9d889 (cdm-dataportal): fix missing mouse over with status
Katja Luther
09:50 AM Revision e173c7df (cdmlib): remove unreachable code
Katja Luther

06/10/2023

07:26 PM Revision a1dbc5ba (cdmlib): cleanup
Andreas Müller
06:02 PM Revision 70064959 (cdmlib-apps): cleanup
Andreas Müller
05:40 PM Revision a746bb3b (cdmlib): cleanup
Andreas Müller
11:30 AM feature request #10335: Allow editing supplemental data for TermNodes
I tested with rem_conf_am/Areatree "Mein Tree"/Land2 => there is an annotation without type which has "Hallo empty3" ... Andreas Müller
11:16 AM feature request #10335 (Feedback): Allow editing supplemental data for TermNodes
Now, no NPE is thrown anymore, but when I store an annotation with no type the text is not shown after reloading the ... Andreas Müller
10:37 AM feature request #10335: Allow editing supplemental data for TermNodes
There is still an NPE in TermNodeDto. I tried to fix.
~~~
Caused by: java.lang.NullPointerException
at eu.etaxo...
Andreas Müller
11:17 AM Revision 5d9193e4 (cdmlib): cleanup
Andreas Müller
10:35 AM Revision 6cb3a2ed (cdmlib): cleanup
Andreas Müller
10:34 AM Revision 3eee0ab1 (cdmlib): ref #10335 fix NPE in TermNodeDto
Andreas Müller
10:27 AM feature request #10310 (Closed): Add IUCN status as feature
Andreas Müller wrote in #note-9:
> Before closing check if it works for cyprus and greece
works for both
Andreas Müller
12:26 AM Revision 19d3a745 (cdmlib): ref #10326 javadoc and further tests
Andreas Müller

06/09/2023

11:48 PM Revision d3643ab1 (cdmlib): ref #10326 try to fix incorrect alternativeRootArea handling
Andreas Müller
10:29 PM Revision 2dbd111b (cdmlib): cleanup
Andreas Müller
10:28 PM Revision 039b0f5d (cdmlib): ref #10326 add alternativeRootNodeMarkerType uuid to MarkerType
Andreas Müller
07:15 PM bug #10346 (Closed): Bugs in E+M dataportal 5.38
There are still some bugs in the data E+M v5.38 dataportal. Mostly in distributions, related to Bryophytes integratio... Andreas Müller
01:11 PM Revision d631fc22 (cdm-dataportal): ref #1055 upgrade jsch version in dataportal
Andreas Müller
01:09 PM Revision 4559e17d (cdm-dataportal): ref #1055 upgrade min jackson version and use jackson.version for databind in dataportal
Andreas Müller
09:34 AM feature request #9640 (Closed): Updated List ICN/ICBN editions
As far as I can see all (but one) issues are fixed. Shenzhen Code citation in PhycoBank Test portal is as expected (0... Wolf-Henning Kusber
09:17 AM task #10302 (Closed): Revise Status section
All issues fixed. The test entries were checked (08/09 June) in the Test portal. Portal output as expected. Test syst... Wolf-Henning Kusber

06/08/2023

11:46 PM Revision 3de5c361 (taxeditor): change CdmBase.isPersited -> isPersisted in taxeditor (cont.)
Andreas Müller
11:27 PM Revision df5cbbf8 (taxeditor): change CdmBase.isPersited -> isPersisted in taxeditor
Andreas Müller
09:33 PM Revision cac337b3 (cdmlib-apps): ref #10337 adapt to term collections in app-import
Andreas Müller
09:31 PM Revision 7164bee3 (cdmlib-apps): adapt pom version in cdmlib-app
Andreas Müller
09:30 PM Revision f2cc5f90 (cdmlib-apps): rename CdmBase.isPersited -> isPersisted in cdmlib-app
Andreas Müller
09:29 PM Revision e263cc79 (cdm-dataportal): rename persited -> persisted in dataportal
Andreas Müller
09:27 PM Revision 0329aba7 (cdmlib): rename CdmBase.isPersited -> isPersisted in cdmlib
Andreas Müller
09:25 PM Revision 3ae0315e (cdm-vaadin): rename CdmBase.isPersited -> isPersisted in vaadin
Andreas Müller
06:26 PM Revision 2e46c802 (cdmlib): ref #10322 by default use distribution treeDto
Andreas Müller
05:51 PM Revision 64209cbe (cdm-server): Merge branch 'release/5.38.0' into develop
jenkins
05:51 PM Revision 1409dca7 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
05:51 PM Revision 92a48707 (cdm-server): updating poms for branch'release/5.38.0' with non-snapshot versions
jenkins
05:50 PM Revision 6cca08f8 (cdm-webapp): Merge branch 'release/5.38.0' into develop
jenkins
05:50 PM Revision 36827a7d (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
05:50 PM Revision e0fb0c16 (cdm-webapp): updating poms for branch'release/5.38.0' with non-snapshot versions
jenkins
05:50 PM Revision 6d0a7b7c (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.38.0
jenkins
05:47 PM Revision d36ad6ae (cdm-vaadin): Merge branch 'release/5.38.0' into develop
jenkins
05:47 PM Revision 29861ca2 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
05:44 PM Revision d659271e (cdm-vaadin): updating poms for branch'release/5.38.0' with non-snapshot versions
jenkins
05:44 PM Revision 0c7a8243 (cdm-vaadin): jenkins bumping cdmlib.version to 5.38.0
jenkins
05:44 PM Revision 1fe7c655 (taxeditor): Merge branch 'release/5.38.0' into develop
jenkins
05:43 PM Revision 185e2e13 (taxeditor): Merge branch 'release/5.38.0'
jenkins
05:43 PM Revision cea07212 (cdm-dataportal): Merge branch 'release/5.38.0' into develop
jenkins
05:43 PM Revision f59105bf (cdm-dataportal): updating poms for branch'release/5.38.0' with non-snapshot versions
jenkins
05:43 PM Revision f1f42438 (cdm-dataportal): release-preparation: production level css
jenkins
05:42 PM Revision 5adfe4f7 (cdmlib): Updating develop poms back to pre merge state
jenkins
05:42 PM Revision cc3fd10c (cdmlib): Merge branch 'master' into develop
jenkins
05:42 PM Revision dc0cd786 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
05:42 PM Revision 3f06713a (cdmlib): Merge branch 'release/5.38.0'
jenkins
05:28 PM Revision 3f553425 (cdmlib): updating poms for branch'release/5.38.0' with non-snapshot versions
jenkins
05:11 PM feature request #10327 (Resolved): IUCN condensed distribution configuration
A first implementation is ready. Any improvemets should go into a new ticket. Andreas Müller
05:09 PM feature request #10335: Allow editing supplemental data for TermNodes
The first time when I removed an annotation and a marker with the same "save" only the annotation was removed. But I ... Andreas Müller
05:08 PM feature request #10335: Allow editing supplemental data for TermNodes
There is an NPE when selecting no annotation type
~~~
java.lang.NullPointerException
at eu.etaxonomy.taxeditor....
Andreas Müller
05:05 PM Revision bf438328 (taxeditor): ref #10335 try to fix NPE when selecting no annotation type
Andreas Müller
04:39 PM Revision 446f8f2c (cdm-vaadin): cleanup
Andreas Müller
04:34 PM feature request #9640 (Resolved): Updated List ICN/ICBN editions
I guess this is more or less fixed. I implemented a way how long citations can be added to the code edition via volat... Andreas Müller
11:49 AM feature request #9640 (In Progress): Updated List ICN/ICBN editions
Citations add for Shenzhen, Melbourne and Vienna Code. Andreas Müller
04:31 PM Revision 9aba3389 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.38.0-SNAPSHOT
jenkins
04:31 PM Revision 7577fb60 (cdm-webapp): updating poms for 5.39.0-SNAPSHOT development
jenkins
04:31 PM Revision a80ae9ca (cdm-webapp): updating poms for 5.38.0 branch with snapshot versions
jenkins
04:31 PM Revision a3c634e2 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.39.0-SNAPSHOT
jenkins
04:31 PM Revision 55828401 (cdm-server): updating poms for 5.39.0-SNAPSHOT development
jenkins
04:31 PM Revision 662a2cd3 (taxeditor): Updated version in pom / project files to taxeditor version : 5.39.0-SNAPSHOT and cdmlib version : 5.39.0-SNAPSHOT
jenkins
04:30 PM Revision 5eae1403 (taxeditor): Updated version in pom / project files to taxeditor version : 5.38.0 and cdmlib version : 5.38.0
jenkins
04:29 PM Revision e298c974 (cdm-vaadin): jenkins bumping cdmlib.version to 5.38.0-SNAPSHOT
jenkins
04:29 PM Revision da4c7faf (cdm-dataportal): updating poms for 5.39.0-SNAPSHOT development
jenkins
04:29 PM Revision b7a70a64 (cdm-vaadin): updating poms for 5.39.0-SNAPSHOT development
jenkins
04:29 PM Revision 713818c5 (cdm-vaadin): updating poms for 5.38.0 branch with snapshot versions
jenkins
04:29 PM Revision 4fda6a40 (cdm-vaadin): jenkins bumping cdmlib.version to 5.39.0-SNAPSHOT
jenkins
04:27 PM task #10302: Revise Status section
WHK, can you please do the final review? Everything should be fixed now. Andreas Müller
03:17 PM task #10302: Revise Status section
Thanks, the label is fine as is! Wolf-Henning Kusber
01:46 PM task #10302: Revise Status section
Wolf-Henning Kusber wrote in #note-26:
> Label for Code edition
>
> Icn 2017 shenzhen
>
> should read
>
> ...
Andreas Müller
12:17 PM task #10302 (Resolved): Revise Status section
I have updated all data on production, test and integration. Now all nom. sources that had as source "Turland et al. ... Andreas Müller
04:25 PM Revision b103b837 (cdmlib): updating poms for 5.39.0-SNAPSHOT development
jenkins
04:23 PM Revision 57a2b786 (cdmlib): ref #9640 cleanup and add Chapter F 2019
Andreas Müller
03:24 PM Revision ac245fb6 (cdmlib): ref #9640 fix forCode tests
Andreas Müller
03:17 PM Revision 8a7bf645 (cdmlib): ref #9640 add some more codes to the NomenclaturalCodeEdition enum and add publication year
Andreas Müller
01:52 PM Revision b563d238 (cdm-dataportal): ref #10302 fix footnote test (cont.)
Andreas Müller
01:48 PM Revision 4413af11 (cdmlib): ref #9640, ref #10302 implement NomenclaturalCodeEdition.toString same as label
Andreas Müller
01:47 PM Revision d03ffd91 (cdmlib): cleanup
Andreas Müller
01:33 PM Revision a4b85659 (cdmlib): ref #9640, ref #10302 remove pages as they are not part of the official "how to cite"
Andreas Müller
01:28 PM Revision 12d53c33 (cdm-dataportal): ref #10302 fix footnote test
Andreas Müller
01:25 PM Revision 99483495 (cdm-dataportal): label for fallback are marker type
Andreas Müller
12:31 PM Revision e8ac8dd9 (cdmlib): ref #9640, ref #10302 add citation data for St Louis Code
Andreas Müller
12:24 PM Revision fed8771b (cdm-dataportal): adapt tests
Katja Luther
11:57 AM Revision 9b332555 (cdm-dataportal): adapt more test cases
Katja Luther
11:47 AM Revision e0793a37 (cdmlib): ref #9640, ref #10302 add citation data for 2011 and 2005 codes
Andreas Müller
11:42 AM Revision c491dd77 (cdm-dataportal): fix failing tests to adapted data
Katja Luther
12:05 AM Revision 8fc59007 (cdmlib): ref #10326 handle alternativeRootArea in condensedDistrString
Andreas Müller
12:02 AM Revision 25e62d6b (cdmlib): cleanup
Andreas Müller

06/07/2023

10:51 PM Revision 3d98473a (cdmlib): ref #10326 fix root switch and check empty and some javadoc
Andreas Müller
09:39 PM Revision 97b459b2 (cdmlib): ref #10326 handle alternativeRootArea in non-DTO based distribution tree (cont.)
Andreas Müller
09:37 PM Revision b13308bb (cdmlib): revert unwanted cleanup changes
Andreas Müller
09:31 PM Revision 453292b8 (cdmlib): ref #10326 handle alternativeRootArea in non-DTO based distribution tree
Andreas Müller
09:30 PM Revision 8bae1295 (cdmlib): cleanup (cont.)
Andreas Müller
09:13 PM Revision e449bd1e (cdmlib): ref #10326 handle alternativeRootArea in DTO based distribution tree
Andreas Müller
09:05 PM Revision 97c3438f (cdmlib): cleanup
Andreas Müller
04:59 PM Revision f1b3af12 (cdm-dataportal): ref #10302: differ between rule considered and/or code edition source available
Katja Luther
04:48 PM Revision ab963b33 (cdm-dataportal): ref #10302: adapt portal code to code edition source - continue
Katja Luther
04:33 PM Revision 19dbd339 (cdm-dataportal): ref #10302: adapt portal code to code edition source
Katja Luther
03:02 PM Revision 7df8f3d4 (cdm-dataportal): use new render method also if taxon not in classification
Katja Luther
02:43 PM Revision aa397243 (cdm-dataportal): ref #10322: differ between dto and cdm object in cdm_taxon_page_title theming
Katja Luther
02:13 PM Revision 11bb55b5 (cdm-dataportal): minor
Katja Luther
01:57 PM Revision ca2d258e (cdmlib): ref #9640, ref #10302 add uuid from phycobank reference to Shenzhen code
Andreas Müller
01:56 PM Revision 0012a148 (cdmlib): cleanup (rename hiddenArea->fallbackArea) and others
Andreas Müller
01:27 PM task #10302: Revise Status section
From Discussion with WHK: the rule considered should only be shown together with the code edition source (or standalo... Andreas Müller
01:26 PM task #10302: Revise Status section
Label for Code edition
Icn 2017 shenzhen
should read
ICN 2017 Shenzhen
Wolf-Henning Kusber
12:57 PM task #10302: Revise Status section
Katja Luther wrote in #note-23:
> This is correct because the second source belongs to the nomenclatural status of N...
Andreas Müller
12:50 PM task #10302: Revise Status section
Andreas Müller wrote in #note-17:
> I added now codeEditionSource to the webservice for nomenclaturalSource, e.g. htt...
Katja Luther
11:57 AM task #10302: Revise Status section
Two points
1) References: all References in the system should be selectable (not in Test, as of 06 June 2023)
2) Li...
Wolf-Henning Kusber
11:51 AM task #10302: Revise Status section
Wolf-Henning Kusber wrote in #note-16:
> This is meant with sub-menues
> Klick on Relation to other name (basionym,...
Andreas Müller
11:44 AM task #10302: Revise Status section
Wolf-Henning Kusber wrote in #note-19:
> @WHK: it still needs to be decided if the current implementation that both ...
Andreas Müller
11:39 AM task #10302: Revise Status section
@WHK: it still needs to be decided if the current implementation that both times shows the rule considered ("Art. 52.... Wolf-Henning Kusber
11:33 AM task #10302: Revise Status section
Katja, can you please continue with this ticket. All other issues are more or less solved (except for those raised by... Andreas Müller
11:28 AM task #10302: Revise Status section
I added now codeEditionSource to the webservice for nomenclaturalSource, e.g. https://test.e-taxonomy.eu/cdmserver/ph... Andreas Müller
10:26 AM task #10302: Revise Status section
![] (sub-menues.PNG)
This is meant with sub-menues
Klick on Relation to other name (basionym, replaced synonym), Va...
Wolf-Henning Kusber
09:14 AM task #10302: Revise Status section
Wolf-Henning Kusber wrote in #note-13:
> Order of the fields is fine.
>
> 06. June 2023 Test-System
> Behind "Re...
Andreas Müller
09:10 AM task #10302: Revise Status section
https://www.phycobank.org/cdm_dataportal/registration?identifier=http%3A//phycobank.org/102050
https://test.e-taxono...
Andreas Müller
11:56 AM Revision 8b7b216f (cdm-vaadin): ref #10302 adapt label for code edition in name relationships (validation & orth. var.)
Andreas Müller
11:17 AM Revision 601b4f82 (cdmlib): ref #9640, ref #10302 add codeEditon source to webservice
Andreas Müller
09:54 AM feature request #10323 (In Progress): Preference for IUCN status list states
I move this ticket to 5.39 because it is needs some more time to implement the preference page. Katja Luther
09:49 AM feature request #10335 (Resolved): Allow editing supplemental data for TermNodes
The UUID and id are shown now and remove works as well. Katja Luther
08:25 AM Revision aafbddf1 (taxeditor): fixing missing parameter
Katja Luther
12:05 AM Revision 6999cd1c (cdmlib): ref #9640, ref #10302 add citation and source to NomenclaturalCodeEdition, at least for Shenzhen 2017
Andreas Müller

06/06/2023

09:53 PM Revision 181a8a0b (taxeditor): ref #10335: add UUID and id to supplemental data of termnodeDtos
Katja Luther
09:52 PM Revision 8bf08aee (cdmlib): ref #10335: add CdmBaseDto Interface
Katja Luther
09:01 PM task #10302: Revise Status section
Order of the fields is fine.
06. June 2023 Test-System
Behind "Reference" still fix list.
Where? Menue "Edit tax...
Wolf-Henning Kusber
07:31 PM task #10302: Revise Status section
Open issues:
* data update
* handling of code edition reference in model and in dataportal
Andreas Müller
07:29 PM task #10302: Revise Status section
Also the order of the fields and the available code editions should be fixed. Please review. Andreas Müller
07:28 PM task #10302: Revise Status section
Andreas Müller wrote in #note-8:
> Andreas Müller wrote in #note-7:
> > Wolf-Henning Kusber wrote:
> > > Die Nutzu...
Andreas Müller
07:07 PM task #10302: Revise Status section
Andreas Müller wrote in #note-7:
> Wolf-Henning Kusber wrote:
> > Die Nutzung sieht wie folgt aus:
> > Ist der Sta...
Andreas Müller
06:51 PM task #10302: Revise Status section
Wolf-Henning Kusber wrote:
> Die Nutzung sieht wie folgt aus:
> Ist der Status angeklickt, geht das Menue für Submi...
Andreas Müller
04:18 PM task #10302 (In Progress): Revise Status section
Andreas Müller
03:18 PM task #10302: Revise Status section
WHK (2023-03-17):
Was für mich noch dringend ist, ist die Korrektur des Bezuges auf den ICB, das muss sowohl in Va...
Andreas Müller
07:27 PM Revision b0e87e1e (cdm-vaadin): ref #10302 show all available sources as reference candidates in NomenclaturalStatusRow
Andreas Müller
07:26 PM Revision d18c26c8 (cdm-vaadin): ref #10302 reduce number of available codes in NomenclaturalStatusRow
Andreas Müller
07:25 PM Revision ef0a5d11 (cdm-vaadin): ref #10302 adapted sizes of fields in NomenclaturalStatusRow
Andreas Müller
07:13 PM Revision 696da239 (cdm-vaadin): cleanup
Andreas Müller
05:02 PM Revision 35e6c620 (cdm-vaadin): ref #10302 change order in NomenclaturalStatusRow
Andreas Müller
05:02 PM Revision f8f20a3e (cdm-vaadin): cleanup
Andreas Müller
04:59 PM Revision b35e8ad4 (taxeditor): ref #10335: add missing constant
Katja Luther
04:48 PM Revision bcd01397 (taxeditor): ref #10335: fix delete of annotations and markers
Katja Luther
04:01 PM Revision 23fe7898 (cdmlib): javadoc
Andreas Müller
03:12 PM bug #10340 (Closed): Categorical and Quantitative Data details view must only show recommended modifiers
Works as expected now Andreas Müller
11:17 AM bug #10340: Categorical and Quantitative Data details view must only show recommended modifiers
Please check again whether the changes are correct. Katja Luther
11:09 AM bug #10340: Categorical and Quantitative Data details view must only show recommended modifiers
Andreas Müller wrote in #note-5:
> Also we need to check if the recommended modifiers only mean the single states/va...
Katja Luther
10:28 AM bug #10340: Categorical and Quantitative Data details view must only show recommended modifiers
Andreas Müller wrote in #note-3:
> This is generally fixed now. Please review.
>
> During implementation I realized ...
Katja Luther
02:51 PM feature request #10335 (Feedback): Allow editing supplemental data for TermNodes
Also it would be nice to show id and uuid as usually for supplemental data. Andreas Müller
02:50 PM feature request #10335: Allow editing supplemental data for TermNodes
Remove does not yet seem to work. Andreas Müller
02:44 PM feature request #10327 (In Progress): IUCN condensed distribution configuration
Andreas Müller
01:00 PM feature request #10323: Preference for IUCN status list states
Andreas Müller wrote in #note-9:
> Katja Luther wrote in #note-8:
> > Maybe another idea is to allow defining distrib...
Katja Luther
12:50 PM feature request #10323: Preference for IUCN status list states
Katja Luther wrote in #note-8:
> Maybe another idea is to allow defining distribution state vocabularies in the feat...
Andreas Müller
11:44 AM feature request #10323: Preference for IUCN status list states
Maybe another idea is to allow defining distribution state vocabularies in the feature? Katja Luther
12:47 PM task #10222 (Closed): Use DTOs for portal taxon page - first implementation for E+M
I tested some random pages of euro+med and I could not find any error messages or problems, I also tested some pages ... Katja Luther
12:40 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
Andreas Müller wrote in #note-101:
> However, taxon annotations are not yet shown but they were in old version. Mayb...
Katja Luther
12:09 PM Revision bcff7344 (cdm-dataportal): move dto settings to layout/taxon on top level
Katja Luther
11:19 AM feature request #10336 (Closed): Allow defining the "et al." position in name formatters for data portal
Ok, then it works as expected. Katja Luther
11:08 AM Revision 61bc134b (taxeditor): ref #10340: code cleaning
Katja Luther

06/05/2023

07:35 PM feature request #10336: Allow defining the "et al." position in name formatters for data portal
ERS:
Yes, I can confirm that what Andreas describes is the wanted behavior. It seems to be a misunderstanding, and...
Andreas Müller
04:42 PM feature request #10336 (Resolved): Allow defining the "et al." position in name formatters for data portal
Katja Luther wrote in #note-12:
> I think for 2 as value the formatter does not work correctly, the result is Abies ...
Andreas Müller
04:02 PM feature request #10336 (Feedback): Allow defining the "et al." position in name formatters for data portal
I think for 2 as value the formatter does not work correctly, the result is Abies alba Abdyeva & al., I would expect ... Katja Luther
05:34 PM Revision 618e8dd2 (cdmlib): ref #10327 fix iucn config handling
Andreas Müller
04:08 PM Revision dd130776 (cdmlib): cleanup
Andreas Müller
03:44 PM feature request #10335 (Resolved): Allow editing supplemental data for TermNodes
This should be solved, please review. Katja Luther
03:24 PM Revision caf6ae8d (cdm-dataportal): fix undefined property exception
Katja Luther
03:20 PM Revision 1c7048de (cdmlib): ref #10327 taxon portal dto loader uses iucn distr info
Andreas Müller
03:20 PM Revision c963fb20 (cdmlib): minor
Andreas Müller
03:20 PM Revision e28fd65b (cdmlib): ref #10327 first IUCN distribution string implementation
Andreas Müller
03:16 PM Revision 4f994ed9 (taxeditor): ref #10335: adapt editor to show supplemental data for termnodes
Katja Luther
03:14 PM Revision 7fbf1460 (cdmlib): ref #10335: create AnnotationDto and MarkerDto and handle them when
saving nodes Katja Luther
01:19 PM task #10227: Implement bioschema.org on taxon pages
Example from GBIF https://www.gbif.org/species/253 (see sourcecode) Andreas Müller
12:53 PM feature request #10327: IUCN condensed distribution configuration
AM:
Die Schwierigkeit hier ist, wie auch bei den Verbreitungen, die hierarchische Anordnung der Areale. Das kommt ...
Andreas Müller
12:44 PM feature request #10327: IUCN condensed distribution configuration
ERS:
Die Kombination von IUCN-Status und Areal im Condensed string ist noch ein bisschen schwer lesbar, vielleicht k...
Andreas Müller
09:57 AM Revision c35291e5 (cdmlib): rename fallbackAreaMarker in configuration
Andreas Müller

06/02/2023

05:10 PM feature request #10327: IUCN condensed distribution configuration
Maybe still possible in this release. Andreas Müller
05:05 PM feature request #10331 (Closed): Allow editing maxPerDataset and evaluate for menu
There is still a minor related issue that when switching Categorical Data on and off the order of Available for and t... Andreas Müller
04:48 PM feature request #10331: Allow editing maxPerDataset and evaluate for menu
Andreas Müller wrote in #note-9:
> Can you please also have a look on my comment on isCloneForSource()? Also this sh...
Andreas Müller
04:57 PM bug #10345 (New): Avoid unnecessary webservice calls in TaxEditor facts view (and others)
copied from #10331#note-10
See for more information there. It looks like some vocabulary data is always taken from...
Andreas Müller
04:53 PM bug #10344 (New): Change listener order for menu and view creation
Currently it looks like (context) menus are sometimes created after filling related views when switching the focus in... Andreas Müller
04:43 PM bug #10340: Categorical and Quantitative Data details view must only show recommended modifiers
Also we need to check if the recommended modifiers only mean the single states/values or for the complete categorical... Andreas Müller
04:23 PM task #10308 (Closed): Show IUCN "distribution" data separately
Andreas Müller
04:22 PM task #10308: Show IUCN "distribution" data separately
The workaround for current E+M is fully functional now for the old and for the new taxon page version. So we can clos... Andreas Müller
10:31 AM task #10308 (Resolved): Show IUCN "distribution" data separately
Andreas Müller wrote in #note-15:
> Katja Luther wrote in #note-13:
> > Now there is a workaround for the dto page ...
Katja Luther
04:18 PM feature request #10323: Preference for IUCN status list states
As editing IUCN data is currently not possible or difficult I increase priority. I add it to current milestone in cas... Andreas Müller
04:12 PM feature request #10343 (New): Full implementation for showing IUCN "distribution" data separately
copied from #10308 , this overlapps a lot or is a duplicate for #10422
In #10308 a first implementation for showin...
Andreas Müller
10:09 AM Revision b28ba4d3 (cdm-dataportal): move use dto setting to taxon profile
Katja Luther
10:09 AM Revision a22eaaa3 (cdm-dataportal): ref #10308: show IUCN status for dto pages
Katja Luther

06/01/2023

11:46 PM task #10308 (Feedback): Show IUCN "distribution" data separately
Katja Luther wrote in #note-13:
> Now there is a workaround for the dto page as well.
It still shows the above me...
Andreas Müller
04:25 PM task #10308 (Resolved): Show IUCN "distribution" data separately
Andreas Müller
04:16 PM task #10308: Show IUCN "distribution" data separately
Now there is a workaround for the dto page as well. Katja Luther
03:16 PM task #10308 (In Progress): Show IUCN "distribution" data separately
As a workaround the distribution hierarchy for IUCN status is shown only if no other distribution data available. Nex... Katja Luther
11:45 AM task #10308 (Feedback): Show IUCN "distribution" data separately
Currently the old taxon pages do not show a map for IUCN status but do show the long text list, which is a duplicate ... Andreas Müller
11:43 PM feature request #10336 (Resolved): Allow defining the "et al." position in name formatters for data portal
Andreas Müller wrote in #note-6:
> I can not save another value then the current "2" in the settings. Therefore I al...
Andreas Müller
11:41 PM feature request #10336: Allow defining the "et al." position in name formatters for data portal
Andreas Müller wrote in #note-8:
> Also move it down into or above "Taxon Name Display" and add a frame.
This sho...
Andreas Müller
05:19 PM feature request #10336: Allow defining the "et al." position in name formatters for data portal
Andreas Müller wrote in #note-7:
> Please change label of settings to "Position of *& al.* in nomenclatural teams".
...
Andreas Müller
04:43 PM feature request #10336: Allow defining the "et al." position in name formatters for data portal
Also move it down into or above "Taxon Name Display" and add a frame. Andreas Müller
04:41 PM feature request #10336: Allow defining the "et al." position in name formatters for data portal
Please change label of settings to "Position of *& al.* in nomenclatural teams".
Also change the first description...
Andreas Müller
04:32 PM feature request #10336 (Feedback): Allow defining the "et al." position in name formatters for data portal
I can not save another value then the current "2" in the settings. Therefore I also can not test. Andreas Müller
01:17 PM feature request #10336 (Resolved): Allow defining the "et al." position in name formatters for data portal
Should be fixed. Andreas Müller
11:27 PM Revision 2af2dae6 (cdm-dataportal): ref #10336 try to fix frame handling
Andreas Müller
11:11 PM Revision d62afda2 (cdm-dataportal): ref #10336 move down, at fieldset and remove get_et_al_pos_settings()
Andreas Müller
10:49 PM Revision 9f0076a3 (cdm-dataportal): ref #10336 remove '
Andreas Müller
10:31 PM Revision 68cc6953 (cdm-dataportal): ref #10336 try to fix default value setting for et al
Andreas Müller
10:30 PM Revision ff14243e (cdm-dataportal): fix syntax in comments
Andreas Müller
07:33 PM Revision dc13b549 (cdmlib): ref #10336remove default value for etAl from taxon page service
Andreas Müller
05:42 PM Revision 84e0ea86 (cdmlib): Cleanup
Andreas Müller
05:18 PM Revision df03f444 (cdm-dataportal): ref #10336 Adapt label for et al.
Andreas Müller
04:54 PM Revision 2c32b194 (cdm-dataportal): minor
Andreas Müller
04:19 PM bug #10342 (New): After changing max per dataset and max states the editor needs to be restarted
... but shouldn't. Katja Luther
04:19 PM feature request #10332 (Closed): Allow editing maxStates and evaluate in StateData Views
We can close this ticket and create a new one for the restart issue. Katja Luther
12:52 PM feature request #10332 (Feedback): Allow editing maxStates and evaluate in StateData Views
Andreas Müller
12:46 PM feature request #10332: Allow editing maxStates and evaluate in StateData Views
It works as expected now. The only issue is that it works only after restart. If this is easy to fix please fix, othe... Andreas Müller
12:11 PM feature request #10332 (Resolved): Allow editing maxStates and evaluate in StateData Views
Andreas Müller wrote in #note-10:
> Katja Luther wrote in #note-8:
> > new field is added and the toolbar of the fe...
Katja Luther
11:02 AM feature request #10332 (Feedback): Allow editing maxStates and evaluate in StateData Views
Katja Luther wrote in #note-8:
> new field is added and the toolbar of the feature details view adapted, to avoid ad...
Andreas Müller
09:07 AM feature request #10332 (Resolved): Allow editing maxStates and evaluate in StateData Views
new field is added and the toolbar of the feature details view adapted, to avoid adding more than x states. Katja Luther
04:18 PM feature request #10241 (Closed): Handle modifiers and modifying text for quantitative data and description elements formatting
This looks fine and tests work as expected. Katja Luther
04:00 PM bug #10340: Categorical and Quantitative Data details view must only show recommended modifiers
This is generally fixed now. Please review.
During implementation I realized that in ModifierElement.setEntity() t...
Andreas Müller
03:44 PM bug #10340 (Resolved): Categorical and Quantitative Data details view must only show recommended modifiers
Applied in changeset commit:taxeditor|48d470ad785b28decc38bbbd235c110347153ae6. Andreas Müller
03:44 PM Revision 48d470ad (taxeditor): fix #10340 fix modifier loading for state data, using recommended modifiers
Andreas Müller
03:44 PM Revision 63e166da (taxeditor): ref #10340 fix potential NPE
Andreas Müller
03:44 PM Revision 31ba2020 (taxeditor): cleanup
Andreas Müller
03:31 PM feature request #10331 (Resolved): Allow editing maxPerDataset and evaluate for menu
Andreas Müller wrote in #note-11:
> Can you still move the "max per dataset" in details view deeper. Below the Avail...
Katja Luther
12:52 PM feature request #10331 (Feedback): Allow editing maxPerDataset and evaluate for menu
Andreas Müller
12:46 PM feature request #10331: Allow editing maxPerDataset and evaluate for menu
For another minor open issue see #10332#note-12 Andreas Müller
10:55 AM feature request #10331: Allow editing maxPerDataset and evaluate for menu
Can you still move the "max per dataset" in details view deeper. Below the Available for information and above "Max s... Andreas Müller
03:30 PM Revision c4fe4d38 (taxeditor): ref #10331: move maxPerDataset and relabel
Katja Luther
03:11 PM Revision bb30ae29 (cdm-dataportal): refe #10222: show distribution hierarchy for IUCN status only if no distributions available
Katja Luther
03:07 PM Revision 09f8e283 (taxeditor): do not show supplemental data for termNodeDto
Katja Luther
02:04 PM Revision 3ea8e556 (taxeditor): ref #10340 cleanup ModifierElement code for loading terms
Andreas Müller
02:04 PM Revision 2b0bc186 (taxeditor): cleanup
Andreas Müller
01:16 PM Revision 97aed0f8 (cdm-dataportal): ref #10222: remove feature and change etAlPos
Katja Luther
12:36 PM feature request #9503 (Closed): Handle term tree of areas and distribution status for distributionInfo in dataportal
Andreas Müller
12:14 PM feature request #9503: Handle term tree of areas and distribution status for distributionInfo in dataportal
Andreas Müller wrote in #note-16:
>
> I agree that I also think that the blocked by information in the ticket de...
Katja Luther
10:45 AM feature request #9503: Handle term tree of areas and distribution status for distributionInfo in dataportal
Katja Luther wrote in #note-15:
> The area tree can be chosen and the distribution info returns only values for the ...
Andreas Müller
10:33 AM feature request #9503: Handle term tree of areas and distribution status for distributionInfo in dataportal
The area tree can be chosen and the distribution info returns only values for the selected areas.
I think #9500 do...
Katja Luther
12:32 PM feature request #10333 (Closed): Make publish flag editable for DescriptionBase
Maybe we can describe #8930 a bit more general and include the DescriptionBase publish icons there. Also we could add... Andreas Müller
11:50 AM feature request #10333: Make publish flag editable for DescriptionBase
I think we need a new icon, which we can use for the navigator and in the factual data view. Therefore I would move i... Katja Luther
11:47 AM feature request #10333 (Feedback): Make publish flag editable for DescriptionBase
Editing is implemented and works. Only the recommended icon is still missing. New ticket or easy to fix? Andreas Müller
12:31 PM feature request #8930: Publishable objects should show icon if they are unpublished
Or if fontawesome works the lock icon: https://fontawesome.com/icons/lock?f=classic&s=solid or the ban icon: https://... Andreas Müller
12:14 PM feature request #8930: Publishable objects should show icon if they are unpublished
Or https://www.compart.com/de/unicode/U+2B55 (⭕) Andreas Müller
12:11 PM feature request #8930: Publishable objects should show icon if they are unpublished
If it is possible to use unicode we could use https://www.compart.com/de/unicode/U+26D4 (⛔) Andreas Müller
12:10 PM Revision c06418ed (taxeditor): ref #10332: move adapt toolbar to StateDataSection
Katja Luther
11:17 AM Revision 46f4b5ec (cdm-dataportal): ref #10222: fix missing doi link
Katja Luther
10:55 AM feature request #10328 (Closed): Add "max records per dataset"
Andreas Müller wrote in #note-9:
> Can you still move the "max per dataset" in details view deeper. Below the Availa...
Andreas Müller
10:52 AM feature request #10328 (Feedback): Add "max records per dataset"
Can you still move the "max per dataset" in details view deeper. Below the Available for information and above "Max s... Andreas Müller
09:55 AM bug #8416 (Worksforme): Array to string conversion problem in render array produced for specimen page
You are right, so we can close this ticket, if it appears again, we can reopen it. Katja Luther
09:54 AM feature request #10337 (Closed): Allow supportedCategoricalEnumeration and recommendedModfiers for term collection
Andreas Müller wrote in #note-2:
> This should be fixed. Please review (especially if all functionality still works ...
Katja Luther
09:26 AM feature request #10341 (Closed): Add source type "internal"
Internal is available in TaxEditor and can be set, in portal it will not been shown because only the mentioned source... Katja Luther
09:22 AM Revision 3f420e59 (taxeditor): ref #10333: add publish checkbox to details view of description
Katja Luther
09:06 AM Revision f5a8afa5 (taxeditor): ref #10332: add max states to feature details view
Katja Luther
08:27 AM Revision 52bd555a (taxeditor): ref #1033: code cleaning
Katja Luther

05/31/2023

06:37 PM feature request #10331: Allow editing maxPerDataset and evaluate for menu
If you have not done yet can you also please verify that the menu creation will **never** create a service call? I fi... Andreas Müller
06:22 PM feature request #10331: Allow editing maxPerDataset and evaluate for menu
It works and can be closed. However, as the code had a lot of redundancy and unnecessary redundant casting, etc. I tr... Andreas Müller
03:06 PM feature request #10331 (Resolved): Allow editing maxPerDataset and evaluate for menu
This should be fixed, please review. Katja Luther
06:26 PM Revision 6c639eb9 (taxeditor): ref #10331 rename getElements
Andreas Müller
06:11 PM Revision 8fc550fa (taxeditor): ref #10331 simplify DynamicFeatureMenuE4 algorithm
Andreas Müller
03:05 PM Revision b3d80936 (taxeditor): ref #10331: add max per dataset to details view and adapt menu creation
Katja Luther
12:59 PM Revision 72c6e24b (cdm-dataportal): ref #10222: code cleaning
Katja Luther
12:50 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
Applied in changeset commit:cdmlib|89f98d29dae1e1f05229e3d6795d509b6cc0af40. Andreas Müller
12:50 PM Revision 89f98d29 (cdmlib): fix #10222 remove elements from parts set to avoid model instances to be returned
Andreas Müller
11:59 AM feature request #10341: Add source type "internal"
Andreas Müller wrote in #note-2:
> Please review. Also check that internal sources are definetely never shown in the ...
Katja Luther
09:02 AM feature request #10341: Add source type "internal"
Please review. Also check that internal sources are definetely never shown in the portal. Also check if they are avai... Andreas Müller
09:01 AM feature request #10341 (Resolved): Add source type "internal"
Applied in changeset commit:cdmlib|a8187b2b3c8bdf84e6ec98c52549788b0b583cc8. Andreas Müller
08:57 AM feature request #10341 (Closed): Add source type "internal"
AM:
"Wir könnten höchstens über einen zusätzlichen Source Type „internal“ nachdenken, der dazu dient, nur interne ...
Andreas Müller
10:23 AM Revision b26af9ce (cdm-dataportal): ref #10336: add settings for et al position and add parameter to ws call
Katja Luther
09:29 AM Revision 1f7e0f56 (cdm-dataportal): ref #10222: code cleaning
Katja Luther
09:01 AM Revision a8187b2b (cdmlib): fix #10341 add source type "internal"
Andreas Müller
 

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