Activity
From 06/30/2023 to 07/29/2023
07/27/2023
- 01:10 PM feature request #10271: Implement CoL-DP export
- WGB:
I looked at the CoLDP documentation and I cc to Markus (who is on vacation I believe).
Reference.type: I ...
07/26/2023
- 06:51 PM Revision 07881322 (cdmlib-apps): some changes on orphaned object deleter
- 06:49 PM Revision a69f61a1 (cdmlib-apps): ref #9771 add additivity CharacterTreeExportActivator
- 06:48 PM Revision 498e4267 (cdmlib-apps): ref #10324 some changes on EuroMedCaucasusChecklistExportActivator and add euromed-caucasus as source
- 06:44 PM Revision 2dcdcc72 (cdmlib-apps): cleanup
- 06:44 PM Revision 89b64be2 (cdmlib-apps): ref #9771 some changes on OntologyExportActivator
- 06:24 PM Revision 67a552a1 (server-scripts): remove ulteo installation script
- 06:18 PM Revision f079a841 (utis-webapp): update log4j version to 2.20
- 05:44 PM Revision 1e1777e3 (cdm-dataportal): cleanup apostrophs in settings.php
07/25/2023
07/24/2023
- 10:53 PM Revision 918e7134 (cdmlib): cleanup
- 05:46 PM bug #10375: Distribution status combo box does not always show correct Spanish value
- See also #10374 for very similar (but not same) issues.
- 05:45 PM bug #10375: Distribution status combo box does not always show correct Spanish value
- I could not reproduce the mixed version and the version with only 2 entries, but I could reproduce that the English v...
- 05:42 PM bug #10375 (Closed): Distribution status combo box does not always show correct Spanish value
- MR:
Beim "Distribution status" stimmt etwas nicht. Wenn ich den TaxEditor aufmache, sind die Kategorien auf Englis... - 05:25 PM bug #10374: Editing Spanish only term does not work
- Please also note that the section label in details view is not updated correctly even if the term editor shows the co...
- 05:20 PM bug #10374: Editing Spanish only term does not work
- The term **can** be changed if actively choosing Spanish after first selecting English:
: Editing Spanish only term does not work
- WGB+MR:
2) Der Text von zwei Kategorien in "Estatus de taxón" ist nicht ganz richtig:
(B) Estatus dudoso: La deli... - 03:43 PM Revision aa516f6f (taxeditor): remove unused method
- 03:37 PM Revision 46181b30 (taxeditor): cleanup
07/21/2023
- 05:25 PM bug #10373 (Closed): Submitter rights for watching respectively editing working sets
- Vaadin (Documentation: Vaadin Test 21 July 2023)
Menue: New
List: Choose from existing publications
List shows s... - 02:35 PM Revision df3e9a0e (cdmlib): ref #10271 further data types for COL-DP and clean up COL-DB and CDM light
07/20/2023
- 08:20 PM feature request #10273 (Discussed): WFO content export (DwC-A)
- 08:20 PM feature request #10271 (In Progress): Implement CoL-DP export
- 04:04 PM Revision 9f3695e5 (cdmlib): ref #10271 add common base classes for CDM light and COL-DP export
- 02:28 PM Revision 25877fda (cdmlib): ref #10271 fix ClearDB datasets (cont. III)
- 10:30 AM Revision dce70ce8 (cdmlib): ref #10271 fix ClearDB datasets (cont. II)
- 09:51 AM Revision e8ae01fa (cdmlib): cleanup
- 09:41 AM Revision a2428d57 (cdmlib): ref #10271 fix ClearDB datasets (cont.)
- 09:21 AM Revision 82983a46 (cdmlib): ref #10271 fix ClearDB datasets
07/19/2023
- 11:07 PM Revision 1cb74dfd (cdmlib): ref #10271 first incomplete version of COL-DP export
- 11:05 PM Revision ea8917d4 (cdmlib): cleanup
- 07:15 PM feature request #10271: Implement CoL-DP export
- Questions:
* how to map reference type article? "article" or "article journal"?
* how to handle nomencl. referneces ...
07/17/2023
- 02:00 PM Revision 76a5b5d9 (cdmlib): cleanup
- 01:55 PM Revision 83c4a98b (cdmlib): cleanup
- 12:38 PM Revision 0587c89a (cdmlib): remaining fix for dataset.dtd
- 12:31 PM Revision 5a33c9f8 (cdmlib): cleanup
07/16/2023
- 06:44 PM Revision e462b5c4 (cdmlib): cleanup
07/14/2023
- 07:06 PM bug #10363: Find a solution for importing all shared preferences in a new eclipse installation
- Some older links:
https://stackoverflow.com/questions/8310748/how-to-share-eclipse-project-preferences-between-users... - 06:12 PM Revision 4f789192 (cdmlib): fix some XML Validations
07/13/2023
- 05:13 PM Revision 8d8629ee (cdmlib): ref #10178 Name Matching Service classes implemented
- 10:51 AM Revision 3ee9275a (cdmlib): cleanup
- 10:44 AM Revision 864a136d (cdmlib): ref #10324 allow absent terms for geographic TaxonNodeFilter
- 10:44 AM Revision aafb3ba2 (cdmlib): ref #10324 fix taxonName->taxonBase propagation in Cdm2CdmImport
- 10:44 AM Revision d2d3d57e (cdmlib): ref #10324 add endemism handling for Cdm2CdmImport
- 10:44 AM Revision 4ca8b3ca (cdmlib): minor
- 10:44 AM Revision f82a5ef4 (cdmlib): cleanup and add TaxonName handling to NonReferencedObjectsDeleter
- 10:44 AM Revision 419856ab (cdmlib): cleanup and add explanations for dummies in cdmlight
- 09:47 AM bug #10372: Display of internal link for footnotes of taxon relations should be configurable
- Maybe this can be done together with #10127
- 09:45 AM bug #10372 (In Progress): Display of internal link for footnotes of taxon relations should be configurable
- As this is only copied from #10369 it should be implemented asap to fully close this issue.
- 09:43 AM bug #10369 (Closed): Show full source information for concept relations in footnotes
- Katja Luther wrote in #note-10:
> Because of missing time I implemented it like it is in the current not dto impleme...
07/12/2023
- 10:27 PM feature request #10361 (Resolved): Managed terms and term collections should not be editable in taxeditor
- Andreas Müller wrote in #note-9:
> Katja Luther wrote in #note-6:
> > Andreas Müller wrote in #note-5:
> > > Generall... - 05:02 PM feature request #10361: Managed terms and term collections should not be editable in taxeditor
- Katja Luther wrote in #note-6:
> Andreas Müller wrote in #note-5:
> > Generally it works, but it is still possible to... - 12:29 PM feature request #10361: Managed terms and term collections should not be editable in taxeditor
- Andreas Müller wrote in #note-5:
> Generally it works, but it is still possible to move a term, to create a new term ... - 07:51 PM Revision b74a05df (taxeditor): Merge branch 'develop' of ssh://git@dev.e-taxonomy.eu/var/git/taxeditor.git into develop
- 07:50 PM Revision ce848880 (taxeditor): ref #10361: adapt menu and drag & drop for vocabularies
- 07:24 PM bug #10372 (In Progress): Display of internal link for footnotes of taxon relations should be configurable
- Currently the setting for internal links to the references is only used for the references in bibliography, we should...
- 07:19 PM bug #10369 (Resolved): Show full source information for concept relations in footnotes
- Because of missing time I implemented it like it is in the current not dto implementation, I create a new ticket for ...
- 04:59 PM bug #10369 (Feedback): Show full source information for concept relations in footnotes
- The DTO version shows link for internal and external reference:
which is ... - 02:02 PM bug #10369 (Resolved): Show full source information for concept relations in footnotes
- Sorry, yes you are right. Now it is fixed, please review.
- 12:47 PM bug #10369 (Feedback): Show full source information for concept relations in footnotes
- No it is not, this was only because the page was not shown in DTO modus. I switched it back.
- 11:27 AM bug #10369 (Resolved): Show full source information for concept relations in footnotes
- 11:26 AM bug #10369: Show full source information for concept relations in footnotes
- Andreas Müller wrote in #note-4:
> The err. sec. reference is still not shown correctly:
>
> : ref #10369: fix display of err sec/sensu source - continue
- 06:24 PM Revision ada470fd (cdmlib): avoid NPE
- 06:14 PM Revision 106063b4 (taxeditor): cleanup
- 05:04 PM task #10324: Export Caucasus data
- Check how many taxa are already imported:
~~~
SELECT tn.id, tn.created, tn.countChildren, tn.treeIndex, tn.parent... - 04:24 PM feature request #9771: Implement Cdm2Cdm for vocabularies
- And update enum columns after release:
~~~
UPDATE DefinedTermBase
SET authorityType = authorityType_tmp, importMetho... - 01:59 PM Revision 9b20da0d (cdm-dataportal): ref #10369: fix display of err sec
- 01:21 PM bug #10371: ABCD file import fails for some test files
- for the file C_drabifolia_major.xml from test ressources
the stacktrace is:
~~~
Error when reading record! [ab... - 11:07 AM bug #10371 (New): ABCD file import fails for some test files
- Trying to run the ABCD import in Taxeditor, fails for some files from test ressources:
Using a file from test res... - 11:35 AM bug #10370 (Closed): Doi link does not link to the reference
- Andreas Müller wrote in #note-2:
> This works and can be closed. Only note: as the DOI field in CDM does not allow t... - 11:35 AM Revision 4ea21ad5 (cdm-dataportal): ref #10370: comment that doi without prefix should not be allowed
- 11:05 AM task #10009 (Closed): Cleanup dependencies in TaxEditor
- So I think we can close this ticket.
- 11:04 AM task #10009: Cleanup dependencies in TaxEditor
- Katja Luther wrote in #note-15:
> Online search and import works as expected, but importing from a file does not wor...
07/11/2023
- 07:55 PM bug #10370 (Feedback): Doi link does not link to the reference
- This works and can be closed. Only note: as the DOI field in CDM does not allow to save a DOI without a doi prefix it...
- 07:46 PM bug #4879: Concept relationship annotations not shown in the portal
- For further testing I added annotation (+ marker) to MAN and concept relationship on https://test.e-taxonomy.eu/datap...
- 07:45 PM bug #4879 (New): Concept relationship annotations not shown in the portal
- This is still an open issue in both the old taxon pages and in the new taxon pages (#103229
- 07:36 PM feature request #10361 (Feedback): Managed terms and term collections should not be editable in taxeditor
- Generally it works, but it is still possible to move a term, to create a new term in a vocabulary and to delete a ter...
- 07:24 PM bug #10369 (Feedback): Show full source information for concept relations in footnotes
- The err. sec. reference is still not shown correctly:
example from https:... - 05:46 PM bug #8953 (In Progress): Focus not correctly evaluated for details view when switching between names
- As this was reported again I move it to a still open milestone.
- 05:44 PM bug #10053 (Closed): Problems with saving of secundum references
- As this issue was not reported again we close the ticket for now.
- 05:42 PM bug #10054 (Closed): Changes on secundum reference are lost after changing status to basionym
- As it was not reported again we close this ticket.
- 05:41 PM bug #10111: Data loss e.g. when entering type information
- This still seems to be open or there is a similar issue as reported by WGB. Therefore I moved it back to an open mile...
- 05:40 PM bug #10111 (In Progress): Data loss e.g. when entering type information
- WGB 2023-06-20:
ich habe eine solche Eingabe noch einmal an anderer Stelle gemacht, und war erfolgreich.
Es ist w... - 09:58 AM Revision 40365c42 (cdmlib): ref #10362: adapt dtos and service to new no data status
- 09:57 AM Revision 119dfe98 (cdmlib): ref #10362: add noDataStatus to dto
- 09:14 AM Revision b80c3552 (cdm-dataportal): move hide picture to picture settings
07/10/2023
- 01:53 PM bug #10370 (Resolved): Doi link does not link to the reference
- Please review
- 01:52 PM bug #10370 (Closed): Doi link does not link to the reference
- mail ERS:
und die Links vom Portal zu den doi’s von bibliographischen Referenzen führen zur doi -Homepage, nicht z... - 01:46 PM bug #10369 (Resolved): Show full source information for concept relations in footnotes
- This should be fixed
- 01:45 PM bug #10369 (Closed): Show full source information for concept relations in footnotes
- mail ERS:
gerade ist mir aufgefallen, dass im Portal die Details der bibliografischen Fußnoten verschwunden sind, ... - 11:47 AM feature request #10368 (Closed): Allow excluding factual data from cdmlight export
- Andreas Müller wrote in #note-3:
> Generally this seems to work. The only open issue is that the checkbox is shown b... - 11:46 AM Revision eb98b46c (taxeditor): ref #10368: adapt wizard page
- 10:18 AM bug #10360 (Closed): Correct Name in Source display in portal
07/08/2023
07/07/2023
- 04:43 PM feature request #10133: Improve ontology state vocabularies
- Only open issue: test states used by Lactucinae
- 04:39 PM bug #10360 (Feedback): Correct Name in Source display in portal
- Works as expected (if "should be shown only in synonymy list" acutally means "in **bibliography** ). Please close tic...
- 04:17 PM feature request #10368 (Resolved): Allow excluding factual data from cdmlight export
- Generally this seems to work. The only open issue is that the checkbox is shown beside the "include unpublished" chec...
- 12:56 PM feature request #10368 (In Progress): Allow excluding factual data from cdmlight export
- 12:35 PM feature request #10368: Allow excluding factual data from cdmlight export
- This is already implemented in cdmlib, please add the filter checkbox to TaxEditor cdmlight export UI.
- 12:33 PM feature request #10368 (Closed): Allow excluding factual data from cdmlight export
- To allow exporting larger checklists without OOM-Exceptions.
- 02:33 PM Revision 4b73cbac (taxeditor): cleanup
- 02:00 PM Revision 6e2b2e22 (taxeditor): cleanup
- 02:00 PM Revision 8b788d26 (taxeditor): ref #10368 add Checkbox to cdm-l export
- 01:42 PM Revision 713d73ac (cdm-dataportal): show long citation in footnote for taxonrelation
- 01:28 PM Revision 09988eeb (cdmlib): revert ref #10322 make sourceDto.label a simple attribute, not a list
- 12:54 PM feature request #10367 (Closed): Add citationMicroReference to description of sources in ReferencingObjectsView
- Works as expected in TaxEditor
- 11:25 AM feature request #10367 (Resolved): Add citationMicroReference to description of sources in ReferencingObjectsView
- 11:23 AM feature request #10367 (Closed): Add citationMicroReference to description of sources in ReferencingObjectsView
- This is helpful when e.g. cleaning up references used as nomenclatural references
- 12:37 PM Revision 6db75b51 (taxeditor): fix compile error after cleanup
- 12:34 PM Revision 7c2747c0 (cdmlib): ref #10368 allow excluding factual data from cdmlight export
- 12:17 PM Revision da2afa14 (cdmlib): ref #10322 make sourceDto.label a simple attribute, not a list
- 12:15 PM Revision 0fe41643 (cdmlib): cleanup
- 11:24 AM Revision 237b22e1 (cdmlib): ref #10367 add citationMicroReference to description of sources in ReferencingObjectsView
- 10:59 AM Revision 84183564 (cdmlib): ref #10322 fix NPE in concept relation loading
07/06/2023
- 12:55 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- … dann nochmal in E+M nachdem der Editor einige Tage offen war mit Taxa aber auch TermTrees:
~~~
last remote service... - 09:10 AM feature request #10362 (In Progress): Implement noDataStatus in matrix and details view
- This needs to be added to the matrix and to the details view of categorical and quantitative data.
In matrix for cat... - 12:16 AM Revision 61b49985 (cdm-vaadin): cleanup
- 12:13 AM Revision 0c62b8f8 (cdm-vaadin): ref #2975 update testH2 in vaadin
- 12:12 AM Revision 81188195 (taxeditor): ref #2975 update testH2 in taxEditor
- 12:10 AM Revision b195723c (cdmlib): ref #2975 update testH2 in cdmlib
07/05/2023
- 11:57 PM Revision 2992380a (cdmlib): ref #2975 add noDataStatus to descriptive data (cont. 2)
- 11:54 PM Revision 92bdbd44 (cdmlib): ref #2975 add noDataStatus to descriptive data (cont.)
- 11:39 PM Revision 239ef29d (cdmlib): ref #10322 handle sec- and relSource in taxon relations
- 11:37 PM Revision 1c97323a (cdmlib): cleanup
- 11:32 PM feature request #2975 (Resolved): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
- 11:30 PM Revision 16101b8b (cdmlib): minor
- 02:56 PM Revision 17de2f08 (cdmlib): ref #2975 add noDataStatus to descriptive data
- 02:38 PM bug #10360 (Resolved): Correct Name in Source display in portal
- 02:38 PM bug #10360: Correct Name in Source display in portal
- Andreas Müller wrote in #note-5:
> Can you add an example link?
https://test.e-taxonomy.eu/dataportal/preview/eur... - 01:14 PM Revision 0be7d592 (cdmlib): ref #10178 some cleanup for name matching (cont.)
07/04/2023
- 10:58 PM task #10324: Export Caucasus data
- Common names. ERS:
Also, wenn man individuell filtern kann, sollte es eher so aussehen:
~~~
Georgia: - Georgian (Ge... - 06:53 PM Revision 5f2f7f86 (cdmlib): ref #10178 some cleanup for name matching (not finished yet)
- 08:38 AM Revision a5c62011 (taxeditor): adapt editor to changes in TermvocabularyService - continue
07/03/2023
- 05:31 PM Revision 7bc41f05 (cdmlib): ref #10322 fix exception in PortalDtoLoader due to namedArea.includes proxies (cont.)
- 04:56 PM Revision 6f5c9540 (cdmlib): cleanup
- 04:55 PM Revision 83a81b70 (cdmlib): ref #10322 fix exception in PortalDtoLoader due to namedArea.includes proxies
- 02:52 PM Revision 859f2a9e (cdmlib): fix termDto selects
- 02:30 PM Revision b8b6af13 (taxeditor): Merge branch 'develop' of ssh://git@dev.e-taxonomy.eu/var/git/taxeditor.git into develop
- 02:29 PM Revision 3d40f455 (taxeditor): adapt taxEditor to clean up in dto methods
- 02:27 PM Revision fe5665b8 (cdmlib): clean up dto methods
- 12:00 PM Revision 2ace6e6b (taxeditor): fix remaining compile error
- 11:51 AM Revision 70e0c4b0 (taxeditor): cleanup
- 11:51 AM Revision ee6329a0 (taxeditor): fix compile error after cleanup
- 10:06 AM Revision 956938b6 (cdmlib): comment test that should not yet be committed
- 09:07 AM bug #10360 (Feedback): Correct Name in Source display in portal
- Can you add an example link?
- 09:04 AM bug #10365: Selecting NamedArea tree in distribution preference does not work for distribution editor
- The functionality seems to work.
- 08:55 AM bug #10365 (Feedback): Selecting NamedArea tree in distribution preference does not work for distribution editor
- Still needs code cleanup (see mail). Usage of correct method names and correct service/dao.
- 08:39 AM Revision 0e6dcd69 (cdmlib): fix compile error and cleanup
- 08:30 AM Revision dba6092a (cdmlib): remove unused method and cleanup
07/02/2023
- 12:45 PM Revision bcb3b9a1 (cdmlib): ref #10324 adaptations to Cdm2CdmImport for Caucasus exports
- 12:45 PM Revision 56901e49 (cdmlib): cleanup
- 12:29 PM Revision 12a9060e (cdmlib-apps): ref #10324 add latest changes for Caucasus export
06/30/2023
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