Activity
From 05/06/2024 to 06/04/2024
06/04/2024
- 09:15 PM Revision 71f5bafb (cdmlib): cleanup
- 09:14 PM task #10322 (Resolved): Use DTOs for portal taxon page (cont.)
- Still finally need to check for open issues.
- 11:59 AM task #10322: Use DTOs for portal taxon page (cont.)
- Aggregated descriptions are not yet shown, e.g. https://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_...
- 11:29 AM task #10322: Use DTOs for portal taxon page (cont.)
- Andreas Müller wrote in #note-123:
> Obvious difference is that the new version has no bullet points and shows a foo... - 10:55 AM task #10322: Use DTOs for portal taxon page (cont.)
- I created test data for "Families in other floras" available at https://int.e-taxonomy.eu/dataportal/integration/refe...
- 09:12 PM bug #10489 (Resolved): Deduplicate Etymology
- 09:12 PM feature request #10511 (Resolved): Update script for WFO-ID pattern
- 09:10 PM Revision 57ba5e96 (cdmlib): ref #10511, ref #10489 update url patterns for wfo-id and IF and deduplicate Etymology feature
- 08:32 PM task #7054 (Closed): clean up initialization strategy using '.representations'
- As none of the portal tests did fail I guess we can close this issue.
- 06:30 PM task #7054 (Resolved): clean up initialization strategy using '.representations'
- Remove all the above occurrences of term.representations. Need to wait portal build to check if they are really not n...
- 08:30 PM Revision 7fde40ef (cdm-dataportal): ref #10322, ref #7696, ref #461 Adapt test to use (Name)Type label for missing type status
- 08:30 PM Revision 42d5e5d0 (cdm-dataportal): cleanup
- 07:50 PM bug #10481 (Closed): Vaadin type of the genus: selection truncated
- 07:08 PM bug #10481: Vaadin type of the genus: selection truncated
- Selection is fine, "section" tested. The system works as expected. Ticket can be closed.
- 07:23 PM feature request #8000 (Worksforme): Type of an invalid designation
- This is rather a bug than a feature request (which is maybe complicated to implement), but not with high priority. I ...
- 07:09 PM bug #10497 (Closed): Specific epithet list is not limited to epithets existing for the genus (was: Vaadin selected epithet is gone when a record is re-opened)
- 06:45 PM bug #10497: Specific epithet list is not limited to epithets existing for the genus (was: Vaadin selected epithet is gone when a record is re-opened)
- Tested with Test system (2024-06-04): The system behaves as expected, many thanks. Ticket can be closed.
Problem s... - 06:52 PM bug #7781 (Resolved): original spelling is missing for accepted taxon in taxon page
- 06:49 PM bug #10472: Improve simple search performance in dataportal
- We may want to split this issue by creating a follow-up ticket.
- 06:44 PM feature request #4522 (In Progress): custom status colors not working in cyprus portal
- Is this duplicated by 10313?
- 06:39 PM bug #10131 (In Progress): Improve media specimen formatting for type designations
- Need to do further check how this is handled in type block representation on new taxon pages
- 06:37 PM bug #10223 (In Progress): References for lectotypes should have short references, not full authorship
- Is this fixed automatically?
- 06:35 PM bug #10313 (In Progress): Default color of terms is not shown correctly in dataportal maps
- 06:27 PM Revision a195163a (cdmlib): ref #7054 remove .representations form init strategies
- 06:26 PM Revision 0b77b597 (cdmlib): cleanup
- 06:10 PM feature request #7695 (Rejected): web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- This is not longer required for taxon pages as it comes with the new taxon page webservice already. Close this ticke ...
- 06:02 PM feature request #461 (Resolved): Improve / compact display of types
- 06:00 PM bug #7716 (Resolved): Apply description sources (references) for a DescriptionBase to all included description elements
- This will be implemented only for the new taxon pages as they will be used soon by (almost) all portals.
Implementat... - 05:58 PM task #10514 (New): Apply description sources (references) for a specimen description to all included description elements
- ... copied from #7716
Here should be checked if this is still relevant for specimen pages with descriptive data, a... - 05:55 PM bug #9456 (Duplicate): Sources of Descriptive Datasets visible
- Close as duplicate
- 05:46 PM task #9941 (Resolved): [DISCUSS] Formatting of type designation categories in compact type string
- 05:32 PM feature request #10513 (New): Use locale instead of Language at all places except for common name language
- At almost all places we only need to distinguish a few locales for i18n. For this the java class Locale is sufficient...
- 03:33 PM Revision abcf5570 (cdmlib): ref #10322, ref #9596 handle status less name types correctly (add generic label)
- 03:19 PM Revision 26a24888 (cdmlib): ref #10322, ref #9524 cleanup test
- 02:45 PM Revision 1d693541 (cdm-dataportal): ref #10322: fix exception in taxon interaction handling
- 02:32 PM bug #9979: Flora Greece shows large images
- Needs to be moved again.
- 02:31 PM feature request #10156: Show field unit media in taxon image galleries
- I think this needs to be postponed again.
- 02:29 PM bug #10501: Numbering of footnotes sometimes not correct
- Now the footnotes for sensu references are correct and if synonymy and factual data are on one page, the footnotes ar...
- 02:26 PM Revision e0ec491a (cdm-dataportal): ref #10502: adapt tests to years
- 02:11 PM Revision 861c9789 (cdm-dataportal): ref #10322: use old handling of aggregated descriptions
- 02:03 PM Revision b8bb20f9 (cdm-dataportal): ref #10502: adapt test to added publication years - continue
- 01:28 PM Revision 06eb8a21 (cdm-dataportal): ref #10502: adapt test to added publication years
- 01:14 PM Revision a620f08e (cdm-dataportal): ref #10502: adapt test to added publication years
- 01:10 PM Revision 1e4cb126 (cdm-dataportal): ref #10502: show footnote only if short citation != long citation
- 12:49 PM task #10249 (Duplicate): Mapping for metadata labels of images in portal
- This is fixed with #10440.
- 12:46 PM bug #10502 (Resolved): Short citations of sensu references should be ordered chronologically
- 12:44 PM bug #10502: Short citations of sensu references should be ordered chronologically
- It is implemented on portal side, need to adapt test data and tests.
- 12:41 PM Revision f0603b38 (cdm-dataportal): ref #10502: use sort date for sorting sensu references
- 11:31 AM feature request #7501 (Resolved): Deduplicate MANs and pro parte synonyms in portal results
- In the current implementation (for release 5.43) MAN related to more than one accepted taxon is shown for every relat...
- 10:33 AM task #8710 (Feedback): Decide if sub-area preference and/or status order preference rule
- Please let me know how to review or close ticket if you are convinced that the fix is ok.
- 10:17 AM task #8710 (Resolved): Decide if sub-area preference and/or status order preference rule
- The default is set to true
- 09:17 AM task #8710 (In Progress): Decide if sub-area preference and/or status order preference rule
- Experience shows that both preferences should be true by default
- 10:16 AM Revision 8e457489 (cdm-dataportal): ref #8710: set distribution filter default to true
- 09:55 AM task #3560 (Closed): Withheld unpublished taxa from webservices used in E+M dataportal
- After switching to taxonPageDto webservice there are much less webservices concerned.
In general I guess we can cl... - 09:47 AM task #10443 (In Progress): Develop NFDI-API with Open API
- 09:47 AM feature request #10486: Allow area tree as parameter in advanced search areasInUse request
- This is more or less a duplicate for #10366
06/03/2024
- 05:19 PM feature request #10400 (Closed): Make taxon-specimen relation for taxon pages configurable in webservice
- Open issues copied to other tickets (#10512, #10322, #10474). So this ticket can be closed.
- 05:15 PM bug #10512 (New): Remaining issues to configure taxon-specimen relation in webservices
- copied from #10400
* decide on final format for webservices
* implement binding in controller correctly (dependin... - 04:54 PM feature request #9500 (Closed): Allow removing certain distribution status from distribution publication
- Katja Luther wrote in #note-38:
> Currently there is no test with a status tree != null, we should add a test for th... - 04:41 PM Revision 68e6b8b1 (cdmlib): ref #10322, ref #10313, ref #9524 try to fix missing distribution status colors (cont.)
- 03:03 PM Revision 1daa8954 (cdm-dataportal): ref #10322: fix fallbackAreaType
- 02:57 PM Revision aed3c07d (cdm-dataportal): ref #10322: fix fallbackAreaType
- 02:53 PM Revision b7cf80ec (cdmlib): ref #10322, ref #10313, ref #9524 try to fix missing distribution status colors
- 01:00 PM Revision bcfc4ea1 (cdmlib): cleanup
- 10:53 AM Revision 79f4fe26 (cdm-dataportal): ref #10322: sort footnotes by length and alphabetically - continue
- 10:33 AM Revision 45b8e93f (cdm-dataportal): ref #10322: sort footnotes by length and alphabetically - continue
- 08:01 AM Revision 969e3699 (cdmlib): ref #10509: change to jackson library
06/02/2024
- 10:37 PM Revision 813183ba (cdmlib): ref #10511, ref #10260 at URLPattern to dataset.dtd and adapt test
- 12:11 PM Revision 58c81148 (cdmlib): ref #10492 add undefined to test data and load undefined by default into annotation instance
- 12:05 PM Revision 60eb9a91 (cdmlib): ref #10322 handle supplemental data in taxonDto, not nameDto
06/01/2024
- 05:43 AM Revision baa4c134 (cdm-dataportal): ref #10322 try to fix errors after removing explicit name attribute (cont.)
- 05:23 AM Revision 91d8bea7 (cdm-dataportal): ref #10322 try to fix errors after removing explicit name attribute
- 12:11 AM Revision 914a0819 (cdmlib): ref #10492 fix untyped annotation type uuid in csv file
- 12:10 AM Revision 6fefbb96 (cdmlib): cleanup
- 12:09 AM Revision bccb3e51 (cdmlib): ref #10322 add wfoIdentifier to webservice (cont.)
- 12:07 AM Revision 7d0ea137 (cdmlib): minor
05/31/2024
- 11:51 PM feature request #10511 (In Progress): Update script for WFO-ID pattern
- 06:15 PM feature request #10511 (Closed): Update script for WFO-ID pattern
- should be
https://www.worldfloraonline.org/taxon/
~~~
UPDATE DefinedTermBase SET `urlPattern`='https://www.worl... - 06:08 PM task #8840 (In Progress): Display identifiers in the dataportal
- Identifiers are now delivered via the taxon page webservice (currently only wfo-ids).
Example data already exist for... - 04:31 PM Revision 8adf1bcd (cdmlib): ref #10322 add wfoIdentifier to webservice
- 02:56 PM Revision 30b48afe (cdm-dataportal): ref #10322: sort footnotes by length and alphabetically - continue
- 02:23 PM task #9524 (Resolved): Use non-model objects in database queries for getDistributionInfoFor
- I created a follow up ticket (#10510) for remaining issues (for all fact types, not only distributionInfoFor).
So ... - 02:20 PM task #10510 (New): Remainig issues for full non-model objects loading for factual data
- copied from #9524
Open issues:
* term tree loading
* remaining classes: CategoricalData, QuantitativeData, Use... - 02:11 PM task #10509: Use POST and json for portal taxon page webservice
- KL:
ich habe heute nochmal eine ganze Weile daran gearbeitet, wie man den Link in dem debug Fenster erzeugen kann,... - 02:04 PM task #10509: Use POST and json for portal taxon page webservice
- Some discussion:
AM:
... Außerdem wollte ich fragen, ob sich nicht für die Transformation von json das Jackson-... - 01:47 PM task #10509 (New): Use POST and json for portal taxon page webservice
- copied from #10322, #10508, #10222
There is already some code available in dataportal code to send the configurati... - 02:02 PM Revision b0282dc4 (cdm-dataportal): ref #10322: sort footnotes by length and alphabetically
- 01:35 PM Revision e85ae5ad (cdmlib): ref #10322 remove .name from taxa/synonyms to reduce redundant data load
- 01:25 PM Revision 5514bf64 (cdmlib): cleanup
- 01:24 PM Revision 0aa64b27 (cdmlib): ref #10322 add hasRegistration flag
- 11:56 AM Revision ab5991ca (cdm-dataportal): ref #10322: differ between json data and parameters in POST request
- 11:38 AM Revision 92a23afc (cdmlib): ref #10322, ref #9524 add in-description source loading to dto-loading
- 10:25 AM Revision 4e9269a4 (cdm-dataportal): ref #10508, ref #10322 try to fix NameRelationshipsTest after adapting test data (cont.)
- 10:22 AM Revision 281bb0a3 (cdm-dataportal): cleanup
- 09:53 AM Revision 0e5afca5 (cdm-dataportal): ref #10508, ref #10322 try to fix FootnoteTest test after adapting test data
- 09:48 AM Revision 424c2906 (cdm-dataportal): ref #10508, ref #10322 try to fix order of name relations in registration test after adapting test data
- 09:44 AM Revision ec71635e (cdm-dataportal): ref #10508, ref #10322 fix order of name relations in test after adapting test data
- 09:30 AM feature request #10503 (Closed): Handle order of name relationships in dataportal
- I added the above only open issue to #10508. So we can close this ticket.
- 09:27 AM feature request #10503: Handle order of name relationships in dataportal
- Katja Luther wrote in #note-12:
> Andreas Müller wrote in #note-11:
> > Katja Luther wrote in #note-10:
> > > As t... - 08:44 AM Revision 8305fd5c (cdmlib): ref #10322 handle nameRelTypes in loader
- 07:54 AM Revision 8da0af93 (cdm-dataportal): cleanup
05/30/2024
- 07:38 PM Revision a5273be5 (cdmlib): ref #10322 use withFacts flag
- 03:23 PM Revision 0ccb4959 (cdmlib): ref #10322, ref #9524 avoid loading of name facts via dto loading
- 02:50 PM Revision eb0f45f5 (cdm-dataportal): ref #10322: use linkedUuid instead of uuid attribute
- 02:48 PM Revision d59199cb (cdmlib): ref #10322, ref #9524 fix and unify source type handling
- 12:45 PM Revision 9d39192a (cdmlib): ref #10322, ref #9524 fix linkUuid and linkedObject class in dto loading
- 12:36 PM Revision 69781c1f (cdmlib): ref #10322 fix source (reference) uuid handling and accessed handling
- 12:32 PM Revision 194ac998 (cdm-dataportal): ref #10322: check if items exist before iterate
- 12:10 PM Revision a9bc14e6 (cdm-dataportal): cleanup
- 11:19 AM Revision acf2dfad (cdmlib): ref #10322, ref #9524 fix NPE in common name loading
- 11:16 AM Revision 143480db (cdmlib): ref #10178: POST request try1
- 11:08 AM Revision e45c2f3e (cdmlib): ref #10322 cleanup and extract annotation type checking
- 11:08 AM Revision 9d6779dd (cdmlib): fix potential NPE
- 11:08 AM Revision d595827f (cdmlib): ref #10322, ref #9524 fix non-filter annotation type handling in dto-loading
- 10:28 AM Revision 5d86b991 (cdm-dataportal): ref #10322: ĥandle doi as uri - add blank
- 09:55 AM Revision 096d127a (cdm-dataportal): ref #10322: ĥandle doi as uri
- 09:38 AM Revision e778d206 (cdmlib): ref #10178: testFindingMatchingNamesGenus competed
- 09:29 AM Revision d09ee8d1 (cdm-dataportal): ref #10322: use POST request for taxon page WS call - comment out
05/29/2024
- 09:55 PM Revision ea00f81a (cdm-dataportal): cleanup
- 09:43 PM Revision 50ccbadf (cdmlib): ref #10322, ref #9524 fix NPE in ordering empty featureDto
- 07:33 PM Revision 8f76d090 (cdmlib): ref #10178 fix name matching genus test
- 06:34 PM Revision 2c7ad04b (cdmlib): ref #10322, ref #9524 allow loading annotations without type
- 02:37 PM Revision 0b6482d1 (cdm-dataportal): ref #10322: use POST request for taxon page WS call
- 02:32 PM Revision 4827f1bd (cdmlib): ref #10322: add POST WS for taxon portal page
- 12:56 PM Revision 248295cb (cdmlib): ref #10322, ref #9524 handle empty textdata correctly in dto loading
- 12:43 PM Revision df1218b4 (cdmlib): ref #10178: POST Request using multipart files
- 11:45 AM Revision 1d072feb (cdmlib): ref #10322, ref #9524 add missing cdmClass in source label (cont.)
- 11:34 AM Revision c5a6a632 (cdmlib): ref #10322, ref #9524 add missing cdmClass in source label
- 10:53 AM Revision 72923fd5 (cdmlib): ref #10322, ref #9524 fix potential NPE in CommonName language handling and rename TaxonPageDotLoader_Old
- 09:29 AM Revision b57f218a (cdmlib): ref #10322, ref #9524 fix missing cdmClass type and uuid in typedLabels
- 08:40 AM Revision d88955bb (cdmlib): cleanup
- 08:39 AM Revision 8108f39f (cdmlib): ref #10322, ref #9524 fix missing uuid in facts
05/28/2024
- 11:13 PM Revision b8c90e79 (cdmlib): ref #10322, ref #9524 add tests for area tree and status tree loading and handle simultaneous model and dto loaded testing
- 11:12 PM Revision 46a84c1a (cdmlib): ref #10322, ref #9524 fix missing citation detail in model loading
- 10:02 PM Revision 70fdeebb (cdmlib): ref #9524 use area tree and status tree parameter
- 05:01 PM Revision 3909a148 (cdmlib): ref #10322, ref #9524 fix nameUsedInSource handling (add test)
- 05:00 PM Revision 9695baa9 (cdmlib): cleanup
- 04:04 PM Revision 864992e3 (cdmlib): ref #10322, ref #9524 fix nameUsedInSource handling
- 01:29 PM Revision 127689b2 (cdm-dataportal): ref #10322: add cache_L2 only once to ws_debug, prepare for POST request
- 12:55 PM Revision f96c7d10 (cdmlib): ref #10322, ref #9524 further dto loading of some original source data
- 12:31 PM Revision 1c6cda7b (cdm-dataportal): Revert "ref #10322: add cache_L2 only once to ws_debug, prepare for POST request"
- This reverts commit cb3195cc3815381b695f3dd80165b98200ca006b.
- 12:12 PM Revision cb3195cc (cdm-dataportal): ref #10322: add cache_L2 only once to ws_debug, prepare for POST request
- 11:53 AM Revision 2730fbcf (cdmlib): ref #10322, ref #9524 add original source type (incl. test) and some cleanup
- 10:47 AM Revision ec8f76d6 (cdm-dataportal): ref #10322: remove uuid from parameter list
- 09:30 AM Revision 2d00f3a0 (cdm-dataportal): ref #10322: add variable for dto loading
- 08:46 AM Revision 1b6d8e0a (cdmlib): ref #10322, ref #9524 parameter for pure dto loading
- 06:59 AM task #10508 (New): Remaining issues for DTO based taxon page
- copied from #10322
architecture
* json configuration via POST => #10509
webservices
* (blocking) handle...
05/27/2024
- 05:28 PM task #3336 (Resolved): Improve overall dataportal page loading performance
- Generally this seems to be fixed as all sub-tickets are fixed and at least after 5.43 we expect much faster loading o...
- 05:08 PM task #3348 (Closed): should annotations always be returned for cdm instances? [DISCUSS]
- As this is originally a discuss ticket I guess we can close it. We should continue removing separate annotation loadi...
- 04:58 PM bug #8274 (Closed): Very large taxa (synonymies) can not be handled by the dataportal
- The page still takes some time to load (the page ws currently takes ~4s, maybe longer if not loaded previously). The ...
- 04:01 PM feature request #10503: Handle order of name relationships in dataportal
- Andreas Müller wrote in #note-11:
> Katja Luther wrote in #note-10:
> > As test this page is used:
> > https://int.e... - 03:54 PM feature request #10503: Handle order of name relationships in dataportal
- Katja Luther wrote in #note-10:
> As test this page is used:
> https://int.e-taxonomy.eu/dataportal/integration/re... - 03:33 PM feature request #10503: Handle order of name relationships in dataportal
- On portal side there are no code changes, only the removed sorting, I added the commit.
As test this page is used:
... - 02:51 PM feature request #10503: Handle order of name relationships in dataportal
- OK, so if this is wanted behavior we can close this ticket.
Can you still add a link to integration and add code c... - 02:37 PM feature request #10503: Handle order of name relationships in dataportal
- There is a filter mechanism which puts the blocking name in front of the non/nec names.
- 02:15 PM feature request #10503: Handle order of name relationships in dataportal
- Katja Luther wrote in #note-6:
> In old portal the namerelations are sorted by "compare_name_relations_by_term_order... - 02:11 PM feature request #10503: Handle order of name relationships in dataportal
- In old portal the namerelations are sorted by "compare_name_relations_by_term_order_index" (see ticket description).
- 01:56 PM feature request #10503 (Feedback): Handle order of name relationships in dataportal
- The ordering seems to be type dependend. The following constructed example shows a name from 1830 prior to a name fro...
- 03:51 PM bug #6052: Implement Comparator for Type Designations
- The classes are TypeDesignationComparator and inside this comparator TypeDesignationStatusComparator.
This comparato... - 03:47 PM bug #6052: Implement Comparator for Type Designations
- This is a taxEditor ticket. Can you please check how type designations are ordered in taxEditor name details view and...
- 03:45 PM feature request #8137 (Closed): Implement sources for type designations in data portal
- 03:45 PM feature request #8137: Implement sources for type designations in data portal
- Lectotype source and other sources are displayed in the new portal page.
- 03:42 PM task #6208 (Duplicate): Implement synonymy service responding with DTO
- Close this as duplicate for #10322
- 03:27 PM Revision 631f9373 (cdm-dataportal): ref #10322: ws for annotations only for old age and DUF and typeDesignationDTO
- 03:07 PM Revision 2e8410ee (cdmlib): ref #10322: first implementation for taxon page ws with POST
- 03:03 PM Revision fd136f12 (cdm-dataportal): ref #10322: ws for annotations only for old non-dto page and derived unit facade
- 02:54 PM bug #4962 (Closed): improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
- Added follow-up ticket for further improvements
- 02:45 PM task #10507 (New): Further improve childNodesAtRank classification web service
- Copied from #4962
Full service is portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid}
The webservice s... - 02:28 PM Revision ba074ca0 (cdm-dataportal): ref #10322: ws for annotations only for old non-dto page
- 02:26 PM bug #10495 (Closed): NPE when uncheck all languages in common name preference
- This is difficult to test for me as I do not know if I can reproduce the state that lead to the bug.
However, as I... - 01:54 PM bug #10495 (Resolved): NPE when uncheck all languages in common name preference
- This should be fixed, please review.
- 01:59 PM bug #10485 (Closed): Remove percentage for name based advanced search
- Fixed now. The incorrect order will be handled in #9966
- 01:36 PM bug #10485 (Resolved): Remove percentage for name based advanced search
- Andreas Müller wrote in #note-6:
> The percentage is removed, but also for fact based advanced search, which should ... - 09:42 AM bug #10485: Remove percentage for name based advanced search
- Katja Luther wrote in #note-7:
> Andreas Müller wrote in #note-6:
>
> >
> > Also the result does not seem to ha... - 09:24 AM bug #10485: Remove percentage for name based advanced search
- Andreas Müller wrote in #note-6:
>
> Also the result does not seem to have an expected order (alphabetical or by... - 01:56 PM bug #10480 (Closed): Problems with name details view when ranks are limited
- The termManager did not have the reduced list of ranks, now this list is loaded wile starting and reloaded if the loc...
- 01:53 PM Revision d4207240 (taxeditor): ref #10495: handle uncheck update in a list
- 01:39 PM bug #10494 (Closed): Taxon child node computation still uses model instances
- Andreas Müller wrote in #note-6:
> Katja Luther wrote in #note-5:
> > removed the outer join for the TaxonNodeDto c... - 01:29 PM Revision 2b4b9959 (cdm-dataportal): ref #10485: show percentage for descriptionelement search
- 10:31 AM bug #10504 (Closed): NPE when saving deduplication in bulkeditor
- Code looks ok. As I don't how this is reproducable I can not test. Close ticket.
- 10:05 AM bug #10476 (Closed): Sources with name in source are not correctly deduplicated in footnotes
- The result looks as expected so I guess we can close the ticket.
05/25/2024
- 12:17 AM feature request #8000: Type of an invalid designation
- Andreas Müller wrote in #note-4:
> Is this still an open issue?
>
> If yes, can you please update the above link ... - 12:15 AM bug #6195 (Feedback): Suppress footnotes in search results page
- This seems to work, I have not seen annotations in search for longer time, now.
Maybe you can still add code links i... - 12:12 AM bug #10485 (Feedback): Remove percentage for name based advanced search
- The percentage is removed, but also for fact based advanced search, which should not be the case (see ticket descript...
05/24/2024
- 06:33 PM bug #10481 (Resolved): Vaadin type of the genus: selection truncated
- This should be resolved. It can be tested (also on test) with a typified genus name that has a nomenclatural referenc...
- 06:18 PM bug #10481: Vaadin type of the genus: selection truncated
- In general the usage of the term publishedUnit is used in different ways therefore it is difficult to debug.
Most ... - 06:06 PM bug #10481: Vaadin type of the genus: selection truncated
- This is kind of a duplicate for #10434, but it shows that a special case is not yet correctly implemented there.
T... - 03:27 PM bug #10481 (In Progress): Vaadin type of the genus: selection truncated
- 06:30 PM Revision 2c8b1e25 (cdm-vaadin): cleanup and javadoc
- 06:26 PM Revision 90bfe2b6 (cdm-vaadin): ref #10481 avoid Section for publishedUnit
- 06:23 PM Revision 60257f8e (cdmlib): ref #10481 add static sectionSafePublicationUnit to RegistrationWorkingSet
- 06:23 PM Revision cbfa571c (cdmlib): ref #10481 cleanup and rename findPublishedUnit->findCitedSource
- 06:19 PM Revision 8362ef5e (cdm-vaadin): ref #10481 rename getCitationUuid to getPublicationUnitUuid in RegistrationWorkingSet
- 01:30 PM Revision 55fa8f1c (cdm-vaadin): fix namePartsFilter handling for non-genusOrUninomial name parts
- 01:28 PM Revision 3a04e6aa (cdm-vaadin): javadoc
- 01:28 PM bug #10497 (Resolved): Specific epithet list is not limited to epithets existing for the genus (was: Vaadin selected epithet is gone when a record is re-opened)
- Should be fixed and can be reviewed. A related ticket was created #10506
- 11:17 AM bug #10497: Specific epithet list is not limited to epithets existing for the genus (was: Vaadin selected epithet is gone when a record is re-opened)
- @WHK: as you mentioned already in note-5 "I selected "truncata" for the species. This epithet was selectable, but not...
- 01:26 PM bug #10506: Hidden fields are saved in taxon name registration editor
- Assign to WHK for the first step ("documentation").
- 01:04 PM bug #10506 (New): Hidden fields are saved in taxon name registration editor
- Changing the rank of a name from e.g. an infraspecific rank to a non-infraspecific rank hides the the not-required fi...
- 12:13 PM Revision abec8088 (cdmlib): ref #10178: input list name semicolon separated
- 11:47 AM Revision 444ddb32 (cdm-vaadin): make listeners debuggable
- 11:39 AM Revision c4567972 (cdm-vaadin): ref #10497 add valueChange listener to WeaklyRelatedEntityCombobox and handling for not-existing value
- 10:44 AM Revision b784da58 (cdm-dataportal): ref #10322: revert comma separated parameter values
- 10:28 AM Revision 2f312724 (cdm-dataportal): ref #10322: revert comma separated parameter values
- 10:07 AM Revision 4df7cc0a (cdm-dataportal): ref #10322: fix getproperty of non-object error
- 09:50 AM Revision fba90082 (cdm-dataportal): ref #10322: parameter with more than one value comma separated
- 08:40 AM Revision 022f77ca (cdm-dataportal): ref #10322: sort sensu references by date and then alphabetical
- 01:48 AM Revision 62c28e91 (cdm-vaadin): cleanup
05/23/2024
- 07:56 PM bug #10497: Specific epithet list is not limited to epithets existing for the genus (was: Vaadin selected epithet is gone when a record is re-opened)
- Okay, once more (Production and Test)
Databasing a new species:
Select "Species"
Submitter selects a genus name ... - 07:00 PM bug #10497: Specific epithet list is not limited to epithets existing for the genus (was: Vaadin selected epithet is gone when a record is re-opened)
- When first selecting the rank the specific epi field is filled with **all** existing specific epis. I guess this is u...
- 04:17 PM bug #10497 (In Progress): Specific epithet list is not limited to epithets existing for the genus (was: Vaadin selected epithet is gone when a record is re-opened)
- Wolf-Henning Kusber wrote in #note-5:
> Thanks,
>
> I selected Micrasterias for the genus
> I selected "truncata" f... - 04:01 PM bug #10497: Specific epithet list is not limited to epithets existing for the genus (was: Vaadin selected epithet is gone when a record is re-opened)
- Thanks,
I selected Micrasterias for the genus
I selected "truncata" for the species. This epithet was selectable... - 03:54 PM bug #10497 (Feedback): Specific epithet list is not limited to epithets existing for the genus (was: Vaadin selected epithet is gone when a record is re-opened)
- This can still not be reproduced. But I tested the data on test. There does not exist (and as it looks like never exi...
- 01:55 PM bug #10497: Specific epithet list is not limited to epithets existing for the genus (was: Vaadin selected epithet is gone when a record is re-opened)
- The procedure:
new taxon, variety or forma
1. Select a genus name
2. Select a speciens name
3. Type in the third ... - 03:12 PM bug #10502 (In Progress): Short citations of sensu references should be ordered chronologically
- Source DTO now has a sortableDate field.
Can you take over and implement the comparator? - 02:11 PM bug #10502: Short citations of sensu references should be ordered chronologically
- https://test.e-taxonomy.eu/cdmserver/euromed/portal/taxon/c0bb1e1f-725e-407a-ba45-e7d33773a0af/page.json?recipe=EuroP...
- 03:10 PM bug #8303 (Duplicate): Improve formatting for misapplied names in search results
- Andreas Müller wrote in #note-3:
> This is probably a duplicate for #7771. Can you check?
Yes I think that is a d... - 03:06 PM Revision f5896349 (cdmlib): ref #10502 add sortable data string to SourceDto (fix date order)
- 03:03 PM Revision 1a88341e (cdmlib): cleanup
- 03:02 PM Revision 7a4ffffb (cdmlib): ref #10502 add sortable data string to SourceDto
- 02:07 PM Revision a80db6bc (cdmlib): ref #10322 reduce inheritance of ConceptRelationDTO
- 12:51 PM feature request #10178: Implement fuzzy name matching
- Name matching services allows to search for a list of input names through a POST request with parameters:
The reque... - 12:40 PM Revision 280156c0 (cdmlib): ref #10178: clean up
- 11:57 AM bug #10494 (Feedback): Taxon child node computation still uses model instances
- Katja Luther wrote in #note-5:
> removed the outer join for the TaxonNodeDto creation of taxon navigator
Good! Ca... - 11:33 AM bug #10494 (Resolved): Taxon child node computation still uses model instances
- removed the outer join for the TaxonNodeDto creation of taxon navigator
- 11:32 AM Revision fa349f4d (cdmlib): ref #10494: avoid outer join for sec ref
- 11:02 AM bug #10501 (In Progress): Numbering of footnotes sometimes not correct
- 09:22 AM bug #10501: Numbering of footnotes sometimes not correct
- First step was moving processing of synonymy in not tabbed pages at the beginning, this results in starting the footn...
- 10:33 AM Revision f6cebb25 (cdm-dataportal): ref #10322: fix footnote numbering
- 10:01 AM Revision 56680692 (cdm-dataportal): ref #10322: fix footnote numbering
- 09:16 AM Revision eef25db7 (cdm-dataportal): ref #10322: fix footnote numbering
- 07:48 AM task #10326: EuroMed mosses remaining issues
- EuroMoss_names remaining
Synonyms:
~~~
SELECT syns.Fullname, syns.pure_name, syns.Authority, syns.Accepted_name
FRO...
05/22/2024
- 08:07 PM Revision b902850b (cdmlib): ref #10178: fix Post request
- 07:58 PM Revision b2d49c5b (cdmlib): Revert "ref #10178: Post request"
- This reverts commit cdf1b9bf3c0a6f425c42caa85b56789738631111.
- 07:46 PM Revision cdf1b9bf (cdmlib): ref #10178: Post request
- 07:27 PM Revision 914accd9 (cdmlib): ref #10178: Post request
- 07:16 PM Revision 35550a48 (cdmlib-apps): ref #10326 add Koperski synonyms import
- 06:25 PM Revision 3570b832 (cdmlib-apps): ref #10326 EuroMoss synonym import (without deduplication) final version
- 06:24 PM Revision 0f1cb3ea (cdmlib): cleanup
- 03:33 PM Revision a45d0cfc (cdm-dataportal): ref #10322: fix footnote numbering
- 03:24 PM task #10322: Use DTOs for portal taxon page (cont.)
- The typedesignation pref. stable identifier is now implemented. Example see https://int.e-taxonomy.eu/dataportal/inte...
- 03:18 PM Revision e17aec11 (cdm-dataportal): ref #10322: fix compilation error
- 03:13 PM Revision 91fbd834 (cdm-dataportal): ref #10322: add pref stable URI as link to typedesign.
- 12:57 PM Revision 0c105db3 (cdmlib): order of meta data after adding representation metadata
- 12:30 PM Revision ee5a3845 (cdm-dataportal): ref #10322: adapt expert page
- 12:30 PM Revision 1f31ede7 (cdm-dataportal): ref #10322: adapt MisappliedNamesTest to annotation and comparator - cont.
- 10:59 AM bug #10494 (Feedback): Taxon child node computation still uses model instances
- Could you please check if the outer join for the sec reference is needed. This may be a performance issue (not sure)....
- 10:26 AM bug #10505 (Closed): Rename synonymy parameter highlite -> highlight
- ... in synonymy links like https://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/newtaxon/77cc1c89-405...
- 09:10 AM bug #10504 (Resolved): NPE when saving deduplication in bulkeditor
- This is fixed, please review.
- 09:10 AM bug #10504 (Closed): NPE when saving deduplication in bulkeditor
- mail AM:
Beim deduplizieren
~~~
last remote service : https://api.cybertaxonomy.org:443/euromed/remoting/com... - 09:09 AM Revision 2ac68034 (taxeditor): fix NPE if no selection exist in bulkeditor
05/21/2024
- 05:40 PM Revision 1744a561 (cdmlib-apps): ref #10326 first version of EuroMoss_names synonym import
- 05:31 PM task #10326: EuroMed mosses remaining issues
- Find synonyms from EuroMoss_names.xlsx => wurde importiert
~~~
SELECT acc.uuid accUuid, n.nameCache acc, syns.pure_n... - 05:24 PM Revision 39a0f614 (cdmlib-apps): cleanup
- 02:11 PM feature request #10496 (Closed): Change DOI from http to https
- looks fine, also tested on other page.
- 01:55 PM Revision f1209d57 (cdm-dataportal): ref #10322: adapt MisappliedNamesTest to annotation and comparator
- 01:27 PM Revision 6859fc06 (cdm-dataportal): ref #10322: add comparator for MAN sensu/err_sec - continue
- 01:26 PM Revision 33c4893b (cdm-dataportal): ref #10322: add comparator for MAN sensu/err_sec
- 11:31 AM Revision a84dae60 (cdmlib): ref #10322 deduplicate year in sources with a source with protected titleCache citation
- 11:13 AM Revision e9146d02 (cdm-dataportal): ref #10322: show annotations also for MAN with appended phrase, adapt test
- 10:40 AM Revision 9e992621 (cdm-dataportal): ref #10322: add parameter for namerelationshiptypes inverse
- 10:39 AM Revision 5912b3e3 (cdm-dataportal): ref #10322: add parameter for namerelationshiptypes
- 10:07 AM Revision 38c568b4 (cdm-dataportal): ref #10322: fix footnotes of MAN
05/17/2024
- 04:45 PM feature request #10496: Change DOI from http to https
- Can you please review?
- 04:15 PM feature request #10496: Change DOI from http to https
- The DOIs are compiled in the dataportal. So some further changes were required.
A (for now temporary) test page is... - 04:45 PM bug #10473 (Closed): Problems in facts view for names
- 03:37 PM bug #10473 (Resolved): Problems in facts view for names
- Andreas Müller wrote in #note-8:
> This seems to be fixed. Only minor somehow related issue, when creating a new nam... - 03:10 PM bug #10473 (Feedback): Problems in facts view for names
- This seems to be fixed. Only minor somehow related issue, when creating a new name fact dataset it is not automatical...
- 02:38 PM bug #10473: Problems in facts view for names
- Why did you set this to "In Progress"? Are there still open issues?
- 02:27 PM bug #10473 (In Progress): Problems in facts view for names
- This should be fixed, I also added the getDefaultDescription to TaxonName class.
- 12:33 PM bug #10473 (Feedback): Problems in facts view for names
- Now, if I try to add a new name fact (without having a name fact dataset first) the new name fact is added to the tax...
- 04:39 PM bug #9015 (Closed): Comparator for Character Matrix creates strange result
- I couldn't observe any issues in test/rem_conf_am/"Structured DDS test" which has a couple of aggregated descriptions...
- 03:46 PM Revision f479a046 (cdm-dataportal): ref #10496 adapt DOIs in references theme and tests
- 03:39 PM Revision 6c42b12b (cdmlib): ref #10496 adapt DOIs in ManifestComposer
- 03:34 PM Revision d76f4c28 (taxeditor): ref #10473: new Namedescription is default if no default exist
- 03:26 PM Revision 6e8da6b2 (cdm-dataportal): ref #10322: fix footnotes of MAN
- 03:20 PM Revision 064fa919 (cdmlib): cleanup
- 03:20 PM Revision 4d05a74f (cdmlib): ref #9015 add serialVersionUID to DerivedUnitDtoComparator
- 02:55 PM Revision e7b4612d (cdm-dataportal): ref #10322: fix footnotes of MAN
- 02:31 PM bug #10487 (Closed): Rename nameUseInSource to original spelling in CDM light name table
- 02:26 PM Revision 49943516 (taxeditor): ref #10473: adapt handler to new method getDefaultDescription
- 02:24 PM Revision a247b385 (cdmlib): ref #10473: add method getDefaultDescription to TaxonName
- 02:18 PM Revision 74c73da5 (taxeditor): ref #10473: fix creation of name description if no exist
- 01:56 PM Revision e97892df (cdm-dataportal): ref #10322: fix footnotes of MAN
- 12:26 PM bug #10480 (Feedback): Problems with name details view when ranks are limited
- As the ticket description does not say anything about what the problem was I can't test it. Also from the code it doe...
- 12:25 PM Revision 230c529c (cdm-dataportal): ref #10322: add footnotes to MAN references after sorting
- 12:15 PM bug #10498 (Closed): Saving problems with additional sources for distributions
- I also can't reproduce this anymore. However, it should be finally tested on production after the next release.
- 11:35 AM bug #10497 (In Progress): Specific epithet list is not limited to epithets existing for the genus (was: Vaadin selected epithet is gone when a record is re-opened)
- I can't reproduce this. Can you give a bit more input on what exactly you did?
From where did you "open this recor... - 10:44 AM Revision d9d2297f (cdm-dataportal): ref #10322: revert accidently commited changes
- 09:59 AM Revision a954163a (cdm-dataportal): ref #10322: implement taxon interactions
- 08:04 AM Revision d47409f2 (cdm-vaadin): cleanup
05/16/2024
- 05:03 PM feature request #10503 (Resolved): Handle order of name relationships in dataportal
- 03:55 PM feature request #10503 (Closed): Handle order of name relationships in dataportal
- KL:
we have noticed that the sorting of the name relations handled as non/nec relations in the data portal is not ... - 01:24 PM Revision 86f1dbd5 (cdm-dataportal): ref #10322: show also annotations of taxon relations and related taxa
- 01:01 PM bug #10502 (Closed): Short citations of sensu references should be ordered chronologically
- Currently the citations of sensu references are ordered alphabetically, but should be chronologically. Also the numbe...
- 01:00 PM Revision e2b2f6c6 (cdmlib): ref #10322 add related taxon annotations to concept relation DTO
- 12:44 PM Revision 0ee66f1c (cdm-dataportal): ref #10322: fix exception
- 12:38 PM Revision 555443a3 (cdm-dataportal): ref #10322: adapt sec footnote handling to show doi
- 12:16 PM Revision c04547fd (cdmlib): ref #10322 add entity reference for sec ref (cont.)
- 11:58 AM task #10322: Use DTOs for portal taxon page (cont.)
- KL:
ich habe mir das nochmal auf der alten Seite angeschaut, das ist ja eigentlich eine Tabelle mit den Referenzen... - 11:05 AM Revision 52e91782 (cdmlib): ref #10322 add entity reference for sec ref (cont.) and handle similar for taxRel taxon secs
- 11:01 AM Revision df2439a2 (cdm-dataportal): ref #10322: add doMedia as parameter
- 10:32 AM Revision 9891cf03 (cdmlib): ref #10322 add entity reference for sec ref (cont.)
- 10:15 AM Revision 03e60d45 (cdm-dataportal): ref #10322: add doTaxonRelations as parameter
- 10:08 AM Revision 070578d2 (cdm-dataportal): ref #10322: add etAlPos parameter
- 09:55 AM Revision 20f054ba (cdm-dataportal): ref #10322: fix handling of sec ref as footnote
05/15/2024
- 06:20 PM Revision dbbb6f75 (cdmlib): cleanup
- 06:20 PM Revision 9cd9ca8c (cdmlib): ref #10322 add entity reference for sec ref
- 05:48 PM Revision bef31831 (cdmlib): unignore temporarily ignored test
- 09:27 AM Revision 7ddd2bc7 (cdm-dataportal): ref #10322: move synonym handling before facts handling
- 09:05 AM bug #10501: Numbering of footnotes sometimes not correct
- The numbering of footnotes comes from the order of processing the different elements. Maybe we have to think about to...
- 08:28 AM bug #10501 (Closed): Numbering of footnotes sometimes not correct
- mail ERS:
ich habe mal zu einem Taxon mal ausführlich Gebrauch von Annotationen gemacht, und zwar sowohl zu Taxon-... - 08:20 AM bug #10500 (New): Warning if distributions without sources exist
- It should be possible to configure the distribution editor in a way that a warning appears if a distribution does not...
- 08:17 AM bug #10499 (New): Adding orth var as synonym is shown as invalid
- mail WB:
das greift eine Diskussion auf, die ich jetzt nicht wiederfinde:
Bei diesem Synonym war T. aegyptiacum a...
05/14/2024
- 06:55 PM Revision 3377f496 (cdmlib): temporarily ignore failing test
- 06:50 PM Revision 12927f9f (cdmlib): ref #10322 try to order related names by year and label
- 03:13 PM bug #10473 (Resolved): Problems in facts view for names
- The NPE shouldn't appear anymore. Please review.
- 03:12 PM Revision 4acf7eb8 (taxeditor): ref #10473: avoid NPE
- 02:50 PM Revision ccef9569 (cdmlib): ref #10178: input parameters added
- 02:40 PM Revision 9ea21a0d (cdm-dataportal): ref #10322: fix layout for facts in dto page
- 01:15 PM Revision 24f30e68 (taxeditor): revert a renaming of method
- 12:43 PM feature request #7311 (Duplicate): drop down for ranks should stay open when typing a character
- This is fixed in the meanwhile, could not find the corresponding ticket.
- 12:30 PM bug #10487: Rename nameUseInSource to original spelling in CDM light name table
- HTML for italics added. Then it should be fixed, I think.
- 12:21 PM Revision b77b4432 (cdmlib): ref #10487: add html to original spelling
- 12:14 PM feature request #10289: Allow editing urlPattern in IdentifierType in TaxEditor
- This should be fixed, please review.
- 12:13 PM Revision b88cb2c1 (taxeditor): ref #10289: add field for url pattern
- 11:12 AM bug #10485 (Resolved): Remove percentage for name based advanced search
- This should be fixed, please review.
- 11:11 AM Revision ec74202a (cdm-dataportal): ref #10485:remove percentage in advanced search result and fix search result
05/13/2024
- 02:21 PM Revision 67f6d4cb (cdm-dataportal): ref #10322:fix tests - continue
- 02:15 PM Revision 716aa79c (cdm-dataportal): ref #10322:fix tests - continue
- 01:45 PM Revision fd430c2c (cdm-dataportal): ref #10322:fix tests - continue
- 01:23 PM Revision 1597b547 (cdm-dataportal): ref #10322:fix tests - continue
- 01:21 PM Revision 54518017 (cdm-dataportal): ref #10322:fix tests - continue
- 01:20 PM Revision aefb93de (cdm-dataportal): ref #10322:fix polytomous key tests - continue
- 11:58 AM Revision 376a0487 (cdm-dataportal): ref #10322:fix footnotes for facts - continue
- 11:48 AM Revision 0ebb07af (cdm-dataportal): ref #10322:adapt polytomous key test
- 11:33 AM Revision bce3408a (cdm-dataportal): ref #10322:annotations of nested facts should be shown
- 09:13 AM Revision 5f1f2846 (cdm-dataportal): ref #10322:all name separators mustn't in italics
05/08/2024
- 10:25 PM task #10326: EuroMed mosses remaining issues
- Find synonyms in Koperski:
~~~
SELECT tn.treeIndex kop_treeIndex, syn.doubtful kop_d, n.nameCache kop_nameCache, syn... - 04:50 PM Revision 6f8ad7d2 (cdmlib): ref #10322, ref #9500 fix status tree handling (cont.)
- 04:19 PM bug #10498: Saving problems with additional sources for distributions
- ERS:
ich habe jetzt mal getestet, und es sieht so aus, dass auch in meiner Version a) - also Default-Quelle hinzuf... - 03:54 PM Revision 87c0c9ea (cdmlib): ref #10322, ref #9500 fix status tree handling
- 03:32 PM Revision fbd9efa8 (cdmlib): try to remove ignore on OaiPmhViewTest
- 03:32 PM Revision 4d8fb08e (cdmlib): cleanup
- 03:31 PM Revision e6e9bdef (cdmlib): ref #10466, ref #10273 add proles, subproles and race to supported ranks
- 01:59 PM Revision b8c9f1c4 (cdm-dataportal): ref #10322:fix problem for nested facts
- 08:35 AM Revision 93511c9f (cdm-dataportal): ref #10322:fix error in distribution filter query
05/07/2024
- 11:42 PM Revision 08d94e69 (cdmlib-apps): add AnyScript
- 11:42 PM Revision 53b69c1d (cdmlib-apps): ref #10326 add script for basionym import
- 11:41 PM Revision 3d6d3b5e (cdmlib-apps): cleanup
- 11:14 PM task #10326: EuroMed mosses remaining issues
- Query used for wfo basionym import:
~~~
-- INSERT INTO cdm_production_euromed_mosses_basionyms.basionyms (cdmUui... - 02:57 PM bug #10498 (Resolved): Saving problems with additional sources for distributions
- Please review.
- 01:45 PM bug #10498 (Closed): Saving problems with additional sources for distributions
- Especially in euro+med there were massive problems with not saved sources. When choosing a cell in distribution edito...
- 02:35 PM bug #10123: NameRelationship display should be more configurable in portal
- Ich stelle mir das so vor:
Für jeden Relationstyp und jede Richtung gibt es ein Dropdown-Feld bei dem man auswähle... - 02:05 PM Revision f74071f7 (taxeditor): ref #10498: revert some code
- 01:45 PM Revision 8810d884 (taxeditor): ref #10498: fix saving problems in distribution editor
- 11:27 AM Revision de0b60b0 (cdm-dataportal): ref #10322:footnote was missing
- 11:18 AM Revision 8bb9a308 (cdm-dataportal): ref #10322: footnote of typedesignation should be 5
- 10:29 AM Revision 8729918f (taxeditor): avoid ClassCastException
05/06/2024
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