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From 12/08/2022 to 01/06/2023

01/06/2023

09:40 PM bug #10111: Data loss e.g. when entering type information
AM:
auch das Ticket #10111 sollte jetzt final gereviewed werden nach dem das Release jetzt draußen ist.
In dies...
Andreas Müller
09:30 PM bug #10053 (Resolved): Problems with saving of secundum references
AM to Maryam:
... Katja and I can’t reproduce. Could you please check next time you work with the TaxEditor if it ...
Andreas Müller
09:16 PM bug #10054: Changes on secundum reference are lost after changing status to basionym
Close ticket fully if Maryam does not report again until 4/23 Andreas Müller
09:16 PM bug #10054 (Resolved): Changes on secundum reference are lost after changing status to basionym
AM to Maryam:
...
As Katja and I can’t reproduce this bug anymore we would like to ask you if you can still repro...
Andreas Müller
08:55 PM bug #8953: Focus not correctly evaluated for details view when switching between names
Close in 4/23 if not reported again. Andreas Müller
08:54 PM bug #8953: Focus not correctly evaluated for details view when switching between names
AM:
ihr hattet das Problem in Ticket #8953 vor 2 Jahren beschrieben. Wir haben in diesem Bereich jetzt einiges ver...
Andreas Müller
08:49 PM bug #10191 (Closed): Error message on taxon specimen page for non-atomized specimens
This looks fine also on production so we close the ticket.
The data itself should still be cleaned up.
Andreas Müller
08:46 PM bug #8653 (Closed): NullPointerException (NPE) when focusing Taxon Name Editor
This issue was obiously not related to the import but to code changes related to preferences. The fix looks reasonabl... Andreas Müller
08:02 PM Revision 2cb7268c (taxeditor): ref #6343, ref 6794 adapt taxeditor to removal of non-typified TermVocabulary.NewInstance method
Andreas Müller
08:02 PM Revision 9ec83bdc (taxeditor): cleanup
Andreas Müller
07:11 PM Revision d7b3d794 (cdmlib): ref #6343, ref 6794 fix creation of OrderedTermVocabulary in imports
Andreas Müller
07:10 PM bug #8270: TermDTOs with an orderIndex are ordered in unordered term vocabularies
Is this still open? Andreas Müller
06:19 PM Revision 816eb1d7 (cdmlib-apps): update poms to 5.36
Andreas Müller
06:19 PM Revision c9a18b1c (cdmlib-apps): cleanup
Andreas Müller
06:02 PM Revision cf70a387 (cdmlib): ref #10201 additional update script for synonym type
Andreas Müller
06:01 PM Revision 40e58fe3 (cdmlib): minor
Andreas Müller
05:01 PM task #10220 (In Progress): Remove SpecimenCdmExcelImport and EndnoteImport in TaxEditor
classes and menu entries are removed, still needs some clean up (strings, comments etc) Katja Luther
02:41 PM task #10220 (Closed): Remove SpecimenCdmExcelImport and EndnoteImport in TaxEditor
mail AM:
~~~
wenn ich es richtig sehe, verwendet der Specimen CDM Excel Import noch nicht die Remoting Implementi...
Katja Luther
02:55 PM Revision a3072f4e (taxeditor): ref #10220: remove unused import code
Katja Luther
11:58 AM Revision 93a7e8c3 (taxeditor): remove menu entries for SpecimenExcelImport and Endnote import
Katja Luther
11:12 AM Revision 65c5c491 (cdmlib): ref #10072 remove file-appender from cdmlib-test log4j2-test
Andreas Müller
10:24 AM Revision 51ed8da5 (taxeditor): continue cleanup checklist files
Katja Luther
10:19 AM Revision 9fb100fb (taxeditor): remove unused class ChecklistEditorInput
Katja Luther

01/05/2023

09:15 PM task #10205: Update GBIF import to modern json library.
please also remove the .ignore entries Andreas Müller
09:03 PM Revision 356e00f7 (taxeditor): javadoc
Andreas Müller
09:03 PM Revision 7b40eb6e (taxeditor): ref #10204, ref #10205 add commons-beanutils and json-lib to .gitignore in taxeditor
Andreas Müller
08:57 PM Revision d197381e (taxeditor): ref #10055 upgrade postgresql to 42.5.1 in taxeditor
Andreas Müller
08:49 PM Revision 980cb5f2 (cdmlib): ref #10055 upgrade postgresql to 42.5.1 in cdmlib
Andreas Müller
08:16 PM feature request #6794 (In Progress): Improve term structure
Andreas Müller
08:13 PM feature request #6794 (Duplicate): Improve term structure
Andreas Müller
06:33 PM task #10216 (In Progress): Upgrade to Spring 5.x
Andreas Müller
05:52 PM bug #6407: Upgrade maven compiler plugin to latest version

I tried to handle aspectj with aspectj-maven-plugin (and remove the ant-run-plugin) in cdmlib-model
https://www.moj...
Andreas Müller
05:49 PM Revision ae2585a1 (cdm-server): Merge branch 'release/5.35.0' into develop
jenkins
05:49 PM Revision 45b71a61 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
05:48 PM Revision 6b6b577d (cdm-server): updating poms for branch'release/5.35.0' with non-snapshot versions
jenkins
05:48 PM Revision 60fe280b (cdm-webapp): Merge branch 'release/5.35.0' into develop
jenkins
05:48 PM Revision 70f70b82 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
05:47 PM Revision acdd8133 (cdm-webapp): updating poms for branch'release/5.35.0' with non-snapshot versions
jenkins
05:47 PM Revision 788cfa8e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.35.0
jenkins
05:35 PM Revision bc57f8df (cdm-vaadin): Merge branch 'release/5.35.0' into develop
jenkins
05:35 PM Revision f585e16a (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
05:31 PM Revision 579728bb (cdm-vaadin): updating poms for branch'release/5.35.0' with non-snapshot versions
jenkins
05:31 PM Revision d8d478e1 (cdm-vaadin): jenkins bumping cdmlib.version to 5.35.0
jenkins
05:31 PM Revision e585c18c (taxeditor): Merge branch 'release/5.35.0' into develop
jenkins
05:31 PM Revision aa7460a8 (taxeditor): Merge branch 'release/5.35.0'
jenkins
05:30 PM Revision 8f5ebfe6 (cdm-dataportal): Merge branch 'release/5.35.0' into develop
jenkins
05:30 PM Revision 39bc3a67 (cdm-dataportal): updating poms for branch'release/5.35.0' with non-snapshot versions
jenkins
05:30 PM Revision 12a3b851 (cdm-dataportal): release-preparation: production level css
jenkins
05:29 PM Revision f51ce131 (cdmlib): Updating develop poms back to pre merge state
jenkins
05:29 PM Revision 12833cf2 (cdmlib): Merge branch 'master' into develop
jenkins
05:29 PM Revision fe942f41 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
05:29 PM Revision 2c4e8753 (cdmlib): Merge branch 'release/5.35.0'
jenkins
05:22 PM task #6981: Migrate to Java 11
This is maybe blocked by upgrading to maven-compiler-plugin 3.x first which has problems with aspectj handling. Andreas Müller
05:16 PM Revision bd858eb5 (cdmlib): updating poms for branch'release/5.35.0' with non-snapshot versions
jenkins
05:06 PM bug #8590 (Duplicate): Details view does not show data of new synonym
This is a duplicate for #10138 and has been fied in current milestone. Andreas Müller
04:57 PM bug #10068 (Resolved): Changing focus to accepted taxon does not work
fixed with commit:a5a95b645c5976. Please review. It also solves the issue that when opening the Taxon Editor the focu... Andreas Müller
03:10 PM bug #10068 (New): Changing focus to accepted taxon does not work
ok,then we keep it in 5.36 Katja Luther
02:54 PM bug #10068: Changing focus to accepted taxon does not work
Katja Luther wrote in #note-2:
> This issue seems to be solved by #10138 and/or #10186. We can remove the version or...
Andreas Müller
02:46 PM bug #10068 (Feedback): Changing focus to accepted taxon does not work
This issue seems to be solved by #10138 and/or #10186. We can remove the version or set it to the current milestone (... Katja Luther
04:46 PM Revision a5a95b64 (taxeditor): ref #10068 fix start focus in Taxon Editor
Andreas Müller
04:39 PM Revision 1e60a1f3 (taxeditor): cleanup
Andreas Müller
03:22 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
This is still an issue when changing the designation status to holotype, adding a specimen solves the problem. So we ... Katja Luther
03:21 PM bug #8953 (Resolved): Focus not correctly evaluated for details view when switching between names
We will ask users to test after release. Andreas Müller
02:41 PM bug #8953 (Feedback): Focus not correctly evaluated for details view when switching between names
I think this problem is fixed, maybe related to #10138 and #10186. We can remove the version or set it to the current... Katja Luther
03:19 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
Now it should reload after 20min (if idle) or 1h (if not idle). Maybe you can test a last time. But it should work as... Andreas Müller
01:52 PM bug #10214 (Resolved): Cache configuration for term cache not correctly initialized in taxeditor
Applied in changeset commit:taxeditor|af15e2e37989f818b9098b604242a02adf295818. Andreas Müller
12:44 PM bug #10214 (Feedback): Cache configuration for term cache not correctly initialized in taxeditor
Ahh, the reason is that CdmServiceCachingProxy overrides the CdmPermanentCache configuration Andreas Müller
12:44 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-10:
> > This should be fixed. Please review.
> >
...
Andreas Müller
09:50 AM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
Andreas Müller wrote in #note-10:
> This should be fixed. Please review.
>
> The most important result should be,...
Katja Luther
03:17 PM bug #10186 (Closed): Problems with session handling in taxeditor
Further issues can be handled in the more detailed tickets. Katja Luther
03:12 PM bug #10186 (Resolved): Problems with session handling in taxeditor
Should we close this ticket and open a new one if we do further research on taxeditor sessions? I think there are a c... Andreas Müller
02:58 PM bug #10186: Problems with session handling in taxeditor
Andreas Müller wrote in #note-10:
> Katja Luther wrote in #note-5:
> > SetSelection in setFocus of TaxonNameEditorE4 ...
Katja Luther
02:57 PM bug #10219: Setting the focus to an already selected entity should not refresh the details view
Similar things happen with the SupplementalDataView. Andreas Müller
02:48 PM bug #10219: Setting the focus to an already selected entity should not refresh the details view
Actually if the name editor looses the focus and gets it back the details view still shows the details of the selecte... Katja Luther
02:47 PM bug #10219 (New): Setting the focus to an already selected entity should not refresh the details view
Katja Luther
02:51 PM bug #10138 (Closed): Details view is not updated after freetext change
Katja Luther
02:17 PM bug #10138 (Feedback): Details view is not updated after freetext change
Katja Luther wrote in #note-26:
> This is like it was before, I think there is already a ticket about it. (for examp...
Andreas Müller
01:06 PM bug #10138 (Resolved): Details view is not updated after freetext change
Katja Luther
12:20 PM bug #10138: Details view is not updated after freetext change
Andreas Müller wrote in #note-25:
> Andreas Müller wrote in #note-24:
> > Katja Luther wrote in #note-22:
> > > I jus...
Katja Luther
12:06 PM bug #10138: Details view is not updated after freetext change
Andreas Müller wrote in #note-24:
> Katja Luther wrote in #note-22:
> > I just tried out another implementation: no...
Andreas Müller
11:11 AM bug #10138: Details view is not updated after freetext change
Katja Luther wrote in #note-22:
> I just tried out another implementation: now the detailsviewer just remember that ...
Andreas Müller
11:10 AM bug #10138 (Feedback): Details view is not updated after freetext change
Katja Luther wrote in #note-21:
> The new solution disables the details view after editing the name in name editor, ...
Andreas Müller
10:54 AM bug #10138: Details view is not updated after freetext change
I just tried out another implementation: now the detailsviewer just remember that there are changes in Name Editor an... Katja Luther
09:33 AM bug #10138 (Resolved): Details view is not updated after freetext change
The new solution disables the details view after editing the name in name editor, editing the other names/taxon/synon... Katja Luther
12:58 AM bug #10138 (Feedback): Details view is not updated after freetext change
This needs to be reverted or adapted. Currently the detail view very often refreshes. This happens also in many cases... Andreas Müller
02:50 PM Revision 30c6d54a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.35.0-SNAPSHOT
jenkins
02:50 PM Revision 76f03c68 (cdm-webapp): updating poms for 5.36.0-SNAPSHOT development
jenkins
02:50 PM Revision d9fa7f17 (cdm-webapp): updating poms for 5.35.0 branch with snapshot versions
jenkins
02:49 PM Revision 3b4e277a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.36.0-SNAPSHOT
jenkins
02:49 PM Revision e11f2e25 (taxeditor): Updated version in pom / project files to taxeditor version : 5.36.0-SNAPSHOT and cdmlib version : 5.36.0-SNAPSHOT
jenkins
02:49 PM Revision ebbf2f6e (taxeditor): Updated version in pom / project files to taxeditor version : 5.35.0 and cdmlib version : 5.35.0
jenkins
02:48 PM Revision 1a06921d (cdm-dataportal): updating poms for 5.36.0-SNAPSHOT development
jenkins
02:46 PM Revision 2a46edab (cdm-vaadin): jenkins bumping cdmlib.version to 5.35.0-SNAPSHOT
jenkins
02:45 PM Revision 4a634289 (cdm-vaadin): updating poms for 5.36.0-SNAPSHOT development
jenkins
02:45 PM Revision 5d568fe8 (cdm-vaadin): updating poms for 5.35.0 branch with snapshot versions
jenkins
02:45 PM Revision 3f96c927 (cdm-vaadin): jenkins bumping cdmlib.version to 5.36.0-SNAPSHOT
jenkins
02:45 PM Revision 2641ef54 (cdm-server): updating poms for 5.36.0-SNAPSHOT development
jenkins
02:41 PM Revision 39d4cb76 (cdmlib): updating poms for 5.36.0-SNAPSHOT development
jenkins
02:38 PM Revision da7a1612 (cdmlib): ref #10072 remove logging to file in cdmlib log4j2.xml -s
Andreas Müller
02:22 PM Revision 63af5415 (cdmlib): javadoc
Andreas Müller
01:51 PM Revision af15e2e3 (taxeditor): fix #10214 fix overriden cache configuration creation, replace eternal by 1h / 20min
Andreas Müller
01:51 PM Revision 1254f0f0 (taxeditor): cleanup
Andreas Müller
12:21 PM Revision 0eae45c1 (taxeditor): ref #10182: disable details view after freetext changes
Katja Luther
12:13 PM Revision 215f1b60 (cdmlib): ref #6407 add commented 3.x version to compiler plugin
Andreas Müller
12:11 PM Revision 0588b251 (cdmlib): cleanup
Andreas Müller
11:15 AM Revision cf54a234 (taxeditor): ref #10182: update details view when it gets the focus and there are changes - continue
Katja Luther
10:51 AM Revision e65bc0e2 (taxeditor): ref #10182: update details view when it gets the focus and there are changes
Katja Luther
09:53 AM Revision b3cd5153 (taxeditor): ref #10182: disable details view after editing name in name editor - code cleaning
Katja Luther
09:46 AM Revision 5379e4c7 (taxeditor): ref #10182: disable details view after editing name in name editor - continue
Katja Luther
09:41 AM Revision abe228a4 (taxeditor): ref #10182: disable details view after editing name in name editor, refresh after save
Katja Luther
09:28 AM Revision 6abed072 (taxeditor): ref #10182: disable details view after editing name in name editor
Katja Luther
08:46 AM Revision 9d6a9bbd (taxeditor): ref #10182: revert refresh of details view when loosing focus
Katja Luther
01:34 AM Revision 28a2e0b5 (taxeditor): ref #10214 rename CdmCacheBase to CdmPermanentCacheBase in TaxEditor (cont.)
Andreas Müller
01:13 AM Revision 87734bf5 (taxeditor): ref #10214 rename CdmCacheBase to CdmPermanentCacheBase in TaxEditor
Andreas Müller
01:05 AM Revision 23732475 (cdmlib): ref #10214 rename CdmCacheBase to CdmPermanentCacheBase
Andreas Müller
12:51 AM Revision 20e97970 (cdm-vaadin): ref #3408 remove EhCacheFacade beans from vaadin applicationContext.xml as it is probably not used in vaadin
Andreas Müller
12:49 AM Revision 28a5e1cd (cdm-vaadin): cleanup
Andreas Müller
12:48 AM Revision c19e393b (cdm-vaadin): ref #10214 adapt vaadin to new CdmPermanentCacheBase name
Andreas Müller

01/04/2023

11:53 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
This should be fixed. Please review.
The most important result should be, that terms are not loaded anymore when c...
Andreas Müller
11:40 PM bug #10214 (Resolved): Cache configuration for term cache not correctly initialized in taxeditor
Applied in changeset commit:cdmlib|61cf7e7af3a0e164f63cb40ec9d897783e376dca. Andreas Müller
12:24 AM bug #10214 (Feedback): Cache configuration for term cache not correctly initialized in taxeditor
This should still be handled in current target version. Andreas Müller
11:32 PM Revision 61cf7e7a (cdmlib): fix #10214 fix term (default) cache configuration handling
Andreas Müller
11:29 PM Revision 105117de (cdmlib): cleanup
Andreas Müller
11:25 PM Revision 25ba5d31 (taxeditor): cleanup
Andreas Müller
10:20 PM task #9207 (Duplicate): update ehcache dependency and handle hibernate-ehcache
Andreas Müller
10:10 PM task #10218 (New): Unify cache handling in CDM platform
Currently ehCache is used in different ways throughout the platform.
* transient entity cache - used by TaxEditor ...
Andreas Müller
08:02 PM Revision 81ae1883 (cdmlib): ref #10077 remove statistics setting from ehCache config as it is deprectated
Signed-off-by: Andreas Müller <a.mueller@bgbm.org> Andreas Müller
06:27 PM task #10201 (Closed): Make synonym type an enum
Andreas Müller wrote in #note-8:
> still need to test taxeditor and fix dozer test
dozer test fixed and no proble...
Andreas Müller
06:24 PM Revision aecc18bb (cdmlib): ref #10201 fix dozer test for synonym type mapping
Andreas Müller
06:22 PM Revision 70711bd7 (cdmlib): cleanup
Andreas Müller
04:08 PM Revision e6842c0d (cdmlib): javadoc for TDWG ontology mapping classes
Andreas Müller
04:02 PM bug #10182 (Closed): Portal does not show typespecimen for duplicated typedesignation
Looks ok now, I think we can finally close this ticket now. Andreas Müller
03:07 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-30:
> Katja Luther wrote in #note-29:
> > made code cleaning mentioned in note#23, so...
Katja Luther
02:50 PM bug #10182 (Feedback): Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-29:
> made code cleaning mentioned in note#23, so we can close this ticket.
The code ...
Andreas Müller
02:15 PM bug #10182 (Closed): Portal does not show typespecimen for duplicated typedesignation
made code cleaning mentioned in note#23, so we can close this ticket. Katja Luther
12:05 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-26:
> Andreas Müller wrote in #note-25:
> > Andreas Müller wrote in #note-22:
> > > I ...
Andreas Müller
09:16 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-24:
> I fixed the widgetIsDisposed issue already. Please review and do the other chang...
Katja Luther
09:15 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-25:
> Andreas Müller wrote in #note-22:
> > I tried to fix the ClassNotFoundException...
Katja Luther
03:01 PM Revision e2833b13 (taxeditor): ref #10182: code cleaning with previous changes
Katja Luther
02:57 PM Revision 16f7b120 (taxeditor): Revert "ref #10182 fix widget is disposed in OccurrenceStatusElement"
This reverts commit fdd9dc5b0e41169f0c258dff17dface2afbea702. Katja Luther
02:57 PM Revision c919ecdb (taxeditor): Revert "ref #10182: code cleaning"
This reverts commit ecf44663eebe48174db1e129091d879b5aaf2eaa. Katja Luther
02:15 PM Revision ecf44663 (taxeditor): ref #10182: code cleaning
Katja Luther
02:05 PM feature request #10196 (Closed): Hybrid structure-state terms
works as expected now. Katja Luther
01:27 PM Revision 371f732a (cdmlib): try to fix test running in suite (cont.)
Andreas Müller
01:04 PM Revision ea49adce (cdmlib): try to fix test running in suite
Andreas Müller
11:59 AM Revision 3b7d528f (cdmlib): cleanup
Andreas Müller
11:57 AM Revision e8fbd83a (cdmlib): ref #10182 adding test to find out what the validation behavior is during load
Andreas Müller
12:22 AM bug #10198 (Closed): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Andreas Müller wrote in #note-10:
> Moving in TaxEditor now works as expected.
>
> There is still an issue that o...
Andreas Müller
12:10 AM feature request #6794: Improve term structure
Issues with orderindex in existing database can be found by the following queries which search for records that have ... Andreas Müller

01/03/2023

11:52 PM bug #10111: Data loss e.g. when entering type information
After short testing I could not reproduce this issue anymore. Maybe it was fixed with #10186. However, this is not gu... Andreas Müller
11:33 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-22:
> I tried to fix the ClassNotFoundException (taxeditor:commit:384cf0c384d17e0f). S...
Andreas Müller
11:22 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
I fixed the widgetIsDisposed issue already. Please review and do the other changes. Andreas Müller
10:12 PM bug #10182 (Feedback): Portal does not show typespecimen for duplicated typedesignation
In the TaxEditor log I find multiple times
~~~
!ENTRY eu.taxeditor 2 0 2023-01-03 21:56:39.428
!MESSAGE Widget i...
Andreas Müller
05:11 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
I tried to fix the ClassNotFoundException (taxeditor:commit:384cf0c384d17e0f). Still needs to be tested. Andreas Müller
02:34 PM bug #10182 (Resolved): Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-20:
> did you put this back to InProgress on purpose?
the exception isn't fixed but...
Katja Luther
02:28 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
did you put this back to InProgress on purpose? Andreas Müller
01:29 PM bug #10182 (In Progress): Portal does not show typespecimen for duplicated typedesignation
Katja Luther
01:29 PM bug #10182 (Resolved): Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-16:
> Andreas Müller wrote in #note-14:
> > Katja Luther wrote in #note-12:
> > ...
>...
Katja Luther
01:10 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-16:
> Andreas Müller wrote in #note-14:
> > Katja Luther wrote in #note-12:
> > ...
>...
Andreas Müller
12:42 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-14:
> Katja Luther wrote in #note-12:
> ...
> > We both (AM und KL) checked the clon...
Katja Luther
12:40 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-13:
> I think the TaxEditor implementation does not use DerivedUnit.clone(). However, ...
Katja Luther
12:38 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-12:
...
> We both (AM und KL) checked the clone mechanism, but during cloning there is ...
Andreas Müller
12:37 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
I think the TaxEditor implementation does not use DerivedUnit.clone(). However, there was a bug in the clone method t... Andreas Müller
10:49 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-5:
> Katja Luther wrote in #note-2:
> > The webservice failed because the derived uni...
Katja Luther
10:47 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Added a check in derived unit wizard, which is used for editing specimens of type designations. Katja Luther
09:29 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
when adding a occurrenceStatus without type now an exception is thrown:
~~~
2023-01-03T09:28:35.757: http://loc...
Katja Luther
11:21 PM Revision fdd9dc5b (taxeditor): ref #10182 fix widget is disposed in OccurrenceStatusElement
Andreas Müller
10:25 PM Revision 6b92893f (cdmlib): add OccurrenceStatus to PermissionClass
Andreas Müller
10:15 PM Revision edc115e3 (cdmlib): add DerivationEvent to PermissionClass
Andreas Müller
10:07 PM Revision 6f665ff7 (taxeditor): cleanup
Andreas Müller
06:33 PM feature request #10202 (Closed): Allow entering specimen in fact sources in taxeditor
works as expected now Andreas Müller
05:50 PM bug #10214 (In Progress): Cache configuration for term cache not correctly initialized in taxeditor
Andreas Müller
05:04 PM Revision 0070dfe4 (taxeditor): cleanup
Andreas Müller
05:04 PM Revision 384cf0c3 (taxeditor): ref #10182 try to fix ClassNotFoundException for javax.validation.ConstraintViolation
Andreas Müller
03:58 PM feature request #10196: Hybrid structure-state terms
Katja Luther wrote in #note-17:
> Clicking on character "growth form" in Bupleurum instance results in StackOverflow...
Andreas Müller
09:13 AM feature request #10196 (Feedback): Hybrid structure-state terms
Clicking on character "growth form" in Bupleurum instance results in StackOverflowException (in DescriptiveDataSet Ed... Katja Luther
03:54 PM Revision ea76aec6 (cdmlib): ref #10196 fix findByTermType
Andreas Müller
03:54 PM Revision bf502b97 (cdmlib): cleanup
Andreas Müller
03:53 PM Revision 0743ef0c (cdmlib): commit only
Andreas Müller
01:15 PM Revision 9a095fa3 (taxeditor): ref #10182: mark type red if empty
Katja Luther
12:29 PM Revision 0ec25996 (cdmlib): javadoc
Andreas Müller
12:27 PM Revision 98ba42ca (cdmlib): ref #2506, ref #10182 fix clone method for DerivedUnit.status
Andreas Müller
12:26 PM Revision 0a403690 (cdmlib): cleanup
Andreas Müller
11:02 AM Revision 638a7036 (taxeditor): fix NPE
Katja Luther
10:42 AM Revision fbbfeef9 (taxeditor): ref #10182: do not allow to save derived unit without occurrence status type in wizard
Katja Luther

12/31/2022

11:55 AM task #3408 (In Progress): replace spring-modules-cache by up to date implementation
The fix did not work. See failing jenkins tests with:
~~~
Caused by: org.springframework.beans.PropertyBatchUpdat...
Andreas Müller
11:48 AM Revision 9a7605ff (cdmlib): Revert " fix #3408, ref #9359 remove springmodules dependency by workaround in AbstractOaiPmhController"
This reverts commit cbe13549e0a30b0dd4e3553cb48c7a34ead84e3b. Andreas Müller

12/29/2022

12:12 PM Revision c2c53e50 (cdmlib): cleanup
Andreas Müller

12/27/2022

09:15 PM Revision e2871450 (cdmlib): ref #10216 fix classification test path
Andreas Müller
07:20 PM Revision 0a954e76 (taxeditor): adapt taxeditor to changes in CdmRemoteCacheManager
Andreas Müller
07:07 PM Revision ef53419f (cdmlib): cleanup
Andreas Müller
06:13 PM feature request #10058: Further improve specimen page (factual data, extensions,
additional issues for specimen page:
mail NK:
Ich weiß nicht ob die 2-Spaltigkeit bei Preserved specimen bis An...
Katja Luther
04:49 PM Revision 24d26860 (cdmlib): cleanup and adapt spelling suggestion to spring-hibernate5 dao
Andreas Müller
03:53 PM task #9359 (Closed): Update cdmlib, taxeditor, cdmserver etc. dependencies
All open issues moved to upgrade 2023 #10055 Andreas Müller
02:16 PM task #10216 (In Progress): Upgrade to Spring 5.x
copied from #10055
there is a local feature branch "feature_10216_spring5"
Issues:
* unitils support (could ...
Andreas Müller
01:47 PM task #3408 (Resolved): replace spring-modules-cache by up to date implementation
Applied in changeset commit:cdmlib|cbe13549e0a30b0dd4e3553cb48c7a34ead84e3b. Andreas Müller
01:37 PM Revision 3c314956 (cdmlib): cleanup
Andreas Müller
01:36 PM Revision cbe13549 (cdmlib): fix #3408, ref #9359 remove springmodules dependency by workaround in AbstractOaiPmhController
* fix fully after upgrading to spring 5.x and EhCache 3.x Andreas Müller
12:33 PM Revision cd142a4a (cdmlib): cleanup
Andreas Müller

12/26/2022

11:58 PM Revision 6745191b (cdmlib): cleanup
Andreas Müller
10:17 PM Revision 6f2fdbed (cdmlib): cleanup
Andreas Müller
10:00 PM Revision 106be861 (cdmlib): cleanup
Andreas Müller
09:54 PM Revision d895f2bb (cdmlib): cleanup
Andreas Müller
08:17 PM Revision 848a0d7d (cdmlib): cleanup
Andreas Müller
08:11 PM Revision 9c90cb9c (taxeditor): fix logging in service proxy
Andreas Müller
08:00 PM Revision 052b7a05 (cdmlib-apps): adapt app-import and pesi to latest changes in cdmlib
Andreas Müller
07:59 PM Revision 6bbb9326 (cdmlib-apps): cleanup
Andreas Müller
07:43 PM Revision 71477484 (taxeditor): cleanup
Andreas Müller
07:42 PM Revision b01f9126 (cdm-vaadin): cleanup
Andreas Müller
07:34 PM Revision 2f3aa2b9 (cdmlib): cleanup
Andreas Müller
04:21 PM Revision a6261600 (cdmlib): cleanup
Andreas Müller
02:00 PM Revision 51a4c26c (cdmlib): cleanup
Andreas Müller
01:09 PM Revision d74319f1 (cdmlib): cleanup and javadoc
Andreas Müller
01:06 PM task #10215 (New): Updates, upgrades and cleanup 2024
All tasks that should be considered during the 2024 updates, upgrades and cleanup sprint.
Upgrades to latest versi...
Andreas Müller

12/23/2022

12:27 AM Revision 6f08293c (cdmlib): cleanup
Andreas Müller

12/22/2022

11:02 AM bug #10138: Details view is not updated after freetext change
Katja Luther wrote in #note-18:
> Andreas Müller wrote in #note-16:
> > As far as I can see the event throwing not ...
Andreas Müller

12/21/2022

02:27 PM Revision fef39755 (taxeditor): ref #10138: handle selection of empty media or factual data view
Katja Luther
02:21 PM bug #8381 (Closed): Closing the details view throws widget is disposed exception
This exception is thrown by our own code, so I remove the try catch because then the WidgetIsDisposedExcpetion will b... Katja Luther
01:19 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
Also it is unclear why single instances of CdmServiceCachingProxy to all use the static DEFAULT_CACHE_NAME from the b... Andreas Müller
01:13 PM bug #10214 (Resolved): Cache configuration for term cache not correctly initialized in taxeditor
This results in short time-to-live and time-to-idle values (and maybe others) as values are taken from default ehCach... Andreas Müller
11:43 AM Revision 14473bb6 (taxeditor): cleanup and renaming for caching
Andreas Müller
11:19 AM Revision 4a718660 (cdm-vaadin): cleanup and renaming for caching
Andreas Müller
11:18 AM Revision 7035cc5a (cdmlib): cleanup and renaming for caching
Andreas Müller
10:42 AM bug #10211 (Closed): Add categorical and quantitative data to cdm light export
export looks ok. Katja Luther
10:41 AM Revision cf3f15d3 (cdmlib): ref #10211: remove new FormatKey[] {}
Katja Luther
10:35 AM bug #8591 (In Progress): Multiple representations problem on setting synonym as basionym
Katja Luther
10:32 AM bug #10138 (In Progress): Details view is not updated after freetext change
Andreas Müller wrote in #note-16:
> As far as I can see the event throwing not happens additionally to the event thr...
Katja Luther
10:09 AM feature request #10202 (Resolved): Allow entering specimen in fact sources in taxeditor
Andreas Müller wrote in #note-11:
> When recreating details view the state is not yet evaluated. So if a reference e...
Katja Luther
10:08 AM Revision 57204e91 (taxeditor): ref #10202: disable reference or specimen selection
Katja Luther
09:47 AM Revision 114109ef (cdmlib): ref #10211: minor
Katja Luther
12:03 AM Revision 20cbb1bf (taxeditor): cleanup
Andreas Müller
12:01 AM Revision fbd332d3 (cdmlib): cleanup
Andreas Müller

12/20/2022

10:50 PM bug #10204 (Closed): GBIF search does not work due to missing json-lib
According to KL this works now. Reverting 4 dependencies is handled in #10205 so we can close this ticket. Andreas Müller
10:45 PM feature request #10199 (Closed): Implement multi-select for terms in term vocabulary editor
Seems to work now as expected Andreas Müller
03:23 PM Revision ec4e915f (taxeditor): ref #10186 fix incorrect isInDelay handling in SelectionDelay
Andreas Müller
02:10 PM bug #10138 (Feedback): Details view is not updated after freetext change
Can you please check this in detail. Andreas Müller
02:08 PM bug #10138: Details view is not updated after freetext change
As far as I can see the event throwing not happens additionally to the event thrown by selection change. We need to c... Andreas Müller
02:02 PM Revision 94fccb8a (taxeditor): ref #10138 disable REFRESH_DETAILS
Andreas Müller
02:02 PM Revision 253231ca (taxeditor): cleanup
Andreas Müller
01:31 PM feature request #10202 (Feedback): Allow entering specimen in fact sources in taxeditor
When recreating details view the state is not yet evaluated. So if a reference exists already it is still possible to... Andreas Müller
11:07 AM feature request #10202 (Resolved): Allow entering specimen in fact sources in taxeditor
Andreas Müller wrote in #note-9:
> Katja Luther wrote in #note-8:
> > Andreas Müller wrote in #note-7:
> > > This ...
Katja Luther
10:47 AM feature request #10202: Allow entering specimen in fact sources in taxeditor
Katja Luther wrote in #note-8:
> Andreas Müller wrote in #note-7:
> > This generally works. During review I only wo...
Andreas Müller
09:39 AM feature request #10202: Allow entering specimen in fact sources in taxeditor
Andreas Müller wrote in #note-7:
> This generally works. During review I only wonder where to put it and how to hand...
Katja Luther
01:13 PM Revision c042e8ee (cdmlib): ref #10182, ref #2506 add notNull to OccurrenceStatus.type to avoid meaningless status
Andreas Müller
12:44 PM bug #10211 (Resolved): Add categorical and quantitative data to cdm light export
Andreas Müller
12:19 PM Revision 40ee2212 (taxeditor): ref #10204, ref #9359 add beanutils and commons-collections to taxeditor buildproperties again -continue
Katja Luther
11:48 AM Revision 387a5e68 (taxeditor): ref #10204, ref #9359 add beanutils and commons-collections to taxeditor buildproperties again
Katja Luther
10:58 AM Revision beab159a (taxeditor): ref #10204, ref #9359 add beanutils and commons-collections to taxeditor pom again
Katja Luther
10:23 AM Revision 55d0a6a4 (cdmlib): Add referencing object formatter for term nodes
Andreas Müller
09:45 AM Revision 446b26b9 (taxeditor): ref #10202: disable specimen selection or reference selection if the other possibility is already used
Katja Luther
09:25 AM feature request #10212 (Closed): Add usePlural to StateData
adapted formatters in cdmlib. I guess this can be closed. Andreas Müller
09:24 AM Revision 49ab0cec (cdmlib): ref #10201 remove SynonymType.csv
Andreas Müller
09:24 AM Revision aa1e840e (cdmlib): ref #10212 adapt formatters to usePlural
Andreas Müller
09:02 AM feature request #10213 (New): Adapt taxeditor to use StateData.usePlural
see #10212
In TaxEditor we may show both normal and plural label in combobox as 2 entries if a plural form exists....
Andreas Müller
08:54 AM Revision d6f98023 (cdmlib): ref #10201 add vocabulary removal for synonym types
Andreas Müller
08:49 AM Revision df6f5a8b (taxeditor): ref #10204, ref #9359 add ezmorph to taxeditor pom again
Katja Luther
06:30 AM Revision 4633b33a (cdmlib): cleanup
Andreas Müller
06:22 AM Revision 6d38d5c2 (cdmlib): cleanup
Andreas Müller

12/19/2022

09:33 PM Revision 611f5f1f (taxeditor): ref #10204, ref #9359 add json-lib to taxeditor pom again
Andreas Müller
04:52 PM Revision 35a9827b (cdm-vaadin): ref #10212 update test H2 for vaadin
Andreas Müller
04:51 PM Revision d33badd8 (taxeditor): ref #10212 update test H2 for taxeditor
Andreas Müller
04:50 PM feature request #10212 (Resolved): Add usePlural to StateData
Applied in changeset commit:cdmlib|3a935f11615fe5bb21d9e1bd00858d057cb1ba77. Andreas Müller
04:03 PM feature request #10212 (In Progress): Add usePlural to StateData
Andreas Müller
04:03 PM feature request #10212 (Closed): Add usePlural to StateData
To allow having only 1 state/structure for the same thing. But only distinguish correct representation in StateData b... Andreas Müller
04:50 PM Revision 3a935f11 (cdmlib): fix #10212 add usePlural to StateData
Andreas Müller
03:54 PM Revision 9db3e365 (cdmlib): ref #10194 fix FullCoverageDataGenerator for new constraint
Andreas Müller
03:39 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Moving in TaxEditor now works as expected.
There is still an issue that orderindex misses some numbers in between ...
Andreas Müller
01:55 PM bug #10198 (Resolved): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
I debugged now in TaxEditor with rem_conf_am NamedArea voc "Test sorting". Moving "Europe2" below Land3 (eclipse View... Andreas Müller
01:32 PM bug #10198 (Feedback): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Katja Luther wrote in #note-7:
> Also tested move and delete in TaxEditor.
> @AM: Please review the move with posit...
Andreas Müller
03:31 PM bug #10191: Error message on taxon specimen page for non-atomized specimens
Looks fine.
We should do a final review on production after release.
Andreas Müller
01:21 PM bug #10191 (Resolved): Error message on taxon specimen page for non-atomized specimens
For unatomized field unit informations the label covers only the rows of field unit information, please review. Katja Luther
03:27 PM feature request #10194: Allow specimens as source for factual data
Added constraint that either reference or specimen can have a value but not both. Andreas Müller
03:26 PM Revision df718639 (cdmlib): ref #10194 add either reference or specimen constraint
Andreas Müller
03:24 PM Revision a17b3f58 (cdmlib): cleanup
Andreas Müller
02:32 PM feature request #10202 (Feedback): Allow entering specimen in fact sources in taxeditor
This generally works. During review I only wonder where to put it and how to handle it best.
My suggestion is to m...
Andreas Müller
02:22 PM feature request #10202: Allow entering specimen in fact sources in taxeditor
Katja Luther wrote in #note-3:
> Added the field, the preference is still missing.
This seems to be implemented i...
Andreas Müller
02:04 PM Revision 2e748910 (cdmlib): ref #10198 revert 6b68bfb9 (before and after handling in moveTerm)
Andreas Müller
02:03 PM Revision 4356940e (cdmlib): ref #10198 use more intuitive parameter names and cleanup
Andreas Müller
01:46 PM bug #10211 (Feedback): Add categorical and quantitative data to cdm light export
Code looks ok though using "new FormatKey[] {}" is not necessary I think. Better use null (this is all work-in-progre... Andreas Müller
12:18 PM bug #10211: Add categorical and quantitative data to cdm light export
Andreas Müller wrote in #note-1:
> For review?
Yes, please review.
Katja Luther
11:48 AM bug #10211 (Resolved): Add categorical and quantitative data to cdm light export
For review? Andreas Müller
11:43 AM bug #10211 (Closed): Add categorical and quantitative data to cdm light export
Categorical and quantitative data are still missing in cdmLight export, this should be implemented. Katja Luther
01:41 PM Revision 8369bf53 (taxeditor): ref #10204: minor
Katja Luther
01:27 PM bug #10204: GBIF search does not work due to missing json-lib
There is still this error message:
net.sf.ezmorph.Morpher cannot be found by eu.etaxonomy.taxeditor.cdmlib_5.35.0....
Katja Luther
01:07 PM Revision 8a2d7112 (cdm-dataportal): ref #10191: for not atomized field unit data, label should cover only the fieldunit rows - continue
Katja Luther
12:37 PM Revision cfc50709 (cdm-dataportal): ref #10191: for not atomized field unit data, label should cover only the fieldunit rows
Katja Luther
12:17 PM Revision 2c701369 (cdmlib): cleanup
Andreas Müller
12:12 PM Revision 73afc4bc (cdmlib): cleanup
Andreas Müller
11:58 AM bug #10192 (Closed): External Links do not work in E+M
The answers of the users were all that the new solution is ok or even better, so we can close this ticket. Katja Luther
11:44 AM Revision afdf0ae6 (cdmlib): ref #10211: add categorical and quantitative data to cdmlight export
Katja Luther
11:19 AM feature request #10133: Improve ontology state vocabularies
For moving states to structures I used:
~~~
UPDATE DefinedTermBase
SET vocabulary_id = 216, titleCache = REPLACE (ti...
Andreas Müller
11:17 AM feature request #10133: Improve ontology state vocabularies
State vocabularies are currently not correctly ordered because the vocs are not OrderedTermVocs:
~~~
SELECT *
FR...
Andreas Müller
11:09 AM feature request #10210 (New): UI for configuring condensed distribution string via separate parameters
Currently one can only choose from the 2 recipies (E+M, Cuba) but cdmlib allows already detailed configuration (see C... Andreas Müller
11:05 AM bug #9987: Handle areas of different vocabularies in comparator
Additionally we should offer to use term trees instead of vocabularies. Andreas Müller
10:56 AM Revision 7b092ee8 (taxeditor): minor
Katja Luther
10:33 AM Revision cf8302dc (taxeditor): add warning that taxa will be deleted with all factual data
Katja Luther
10:24 AM bug #6163: can't add media to observation/specimen anymore
Is this still an open issue?
Andreas Müller

12/17/2022

12:13 PM task #10208 (New): only use cacher for static terms
In DefinedTermBase we have cacher and termMap for static access to terms. We should unify this.
The TermLoader sho...
Andreas Müller
01:31 AM feature request #10194 (Closed): Allow specimens as source for factual data
Andreas Müller
12:49 AM bug #10207 (New): Out-Of-Memory error when working with vocabularies
NoK:
nach einer Weile des Arbeitens im Vokabular geht die Anwendung out-of-memory; die meisten Änderungen werden a...
Andreas Müller

12/16/2022

08:47 PM feature request #10206 (In Progress): Add publish flag to description base
WGB:
wir haben den Fall von Rovaeanthus strigosus (Benth.) Borhidi
Dort gibt es jetzt 3 factual datasets:

![]...
Andreas Müller
06:30 PM bug #10197 (In Progress): Show empty page for delay while updating
Andreas Müller
06:28 PM feature request #9584 (Closed): specimen page: character data displayed in details section
Andreas Müller
05:32 PM feature request #9584: specimen page: character data displayed in details section
demo2 portals using the develop branch now, so you can test here: https://ws2.cybertaxonomy.org/dataportal/greece_bup... Katja Luther
04:54 PM Revision fee81e58 (taxeditor): temporary revert the removal of json library
Katja Luther
04:44 PM bug #10138 (Resolved): Details view is not updated after freetext change
this should be fixed, please review. Katja Luther
02:37 PM bug #10138 (Feedback): Details view is not updated after freetext change
This is probably fixed but not yet commited. Andreas Müller
04:33 PM Revision e751faa2 (taxeditor): ref #10138: after parsing send event to update the details view - continue
Katja Luther
04:23 PM Revision 0b449ec9 (taxeditor): code cleaning
Katja Luther
04:21 PM Revision e5c1cf57 (taxeditor): more information and better about specimen in gbif search view
Katja Luther
04:19 PM Revision 76d3226c (taxeditor): ref #10138: after parsing send event to update the details view
Katja Luther
02:55 PM bug #8591 (Feedback): Multiple representations problem on setting synonym as basionym
If we don't manage for 5.35 please set back to new or inProgress. Andreas Müller
02:52 PM bug #8381 (Resolved): Closing the details view throws widget is disposed exception
Andreas Müller
02:47 PM bug #10053 (In Progress): Problems with saving of secundum references
KL could not reproduce anymore. I will test if I can reproduce. Andreas Müller
02:44 PM feature request #10199 (Resolved): Implement multi-select for terms in term vocabulary editor
Katja Luther
02:44 PM feature request #10199 (In Progress): Implement multi-select for terms in term vocabulary editor
Katja Luther
02:42 PM bug #10162: Problems when deleting names involved in a namerelationship
We need to check the delete name function but it is not clear if this happened really during name delete or due to in... Andreas Müller
02:33 PM bug #10111 (Resolved): Data loss e.g. when entering type information
I will try to reproduce Andreas Müller
02:27 PM bug #10054 (In Progress): Changes on secundum reference are lost after changing status to basionym
KL could not reproduce anymore. I will test if I can reproduce. Andreas Müller
02:25 PM bug #10186: Problems with session handling in taxeditor
Katja Luther wrote in #note-5:
> SetSelection in setFocus of TaxonNameEditorE4 is not necessary and yields to a seco...
Andreas Müller
02:21 PM task #10189 (Closed): Split CdmApplicationController into repository and application part
Andreas Müller
02:19 PM task #9975 (Resolved): Create new UML diagramms for the CDM
please review Andreas Müller
02:17 PM bug #10190 (Closed): Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
Andreas Müller
02:15 PM feature request #10202 (Resolved): Allow entering specimen in fact sources in taxeditor
Andreas Müller
09:50 AM feature request #10202 (In Progress): Allow entering specimen in fact sources in taxeditor
Andreas Müller
09:03 AM feature request #10202: Allow entering specimen in fact sources in taxeditor
Added the field, the preference is still missing. Katja Luther
02:06 PM feature request #10196: Hybrid structure-state terms
Can you please review. When done we can create a ticket for the remaining open issue. Andreas Müller
01:54 PM bug #10192: External Links do not work in E+M
It works now, but it changed from using popups to opening a new tab which is maybe not wanted (there might be a reaso... Andreas Müller
01:14 PM bug #10192: External Links do not work in E+M
Andreas Müller wrote in #note-5:
> How can I test this? It is not yet pushed to production, or? And on test the upda...
Katja Luther
01:43 PM Revision f49c0c13 (taxeditor): ref #10202: add preference handling
Katja Luther
01:42 PM Revision f04331a1 (cdmlib): ref #10202: add preference predicate
Katja Luther
01:42 PM bug #10204 (Resolved): GBIF search does not work due to missing json-lib
Should be fixed. Please review finally on nightly.
Json update moved to #10205
Andreas Müller
01:34 PM bug #10204 (In Progress): GBIF search does not work due to missing json-lib
probably fixed by adding missing dependencies, but we should upgrade to a more modern json framework Andreas Müller
01:37 PM task #10205 (Resolved): Update GBIF import to modern json library.
... after fixing do not forget to remove 4 dependencies again. See commit:taxeditor|f60a1e5ffb4425d1f Andreas Müller
01:34 PM Revision 59ae0b13 (taxeditor): cleanup
Andreas Müller
10:11 AM Revision 3b530403 (cdmlib): adapt test to using https for gbif webservice
Katja Luther
09:02 AM Revision 3fe61023 (taxeditor): ref #10202: add field for specimen in description element source
Katja Luther
08:11 AM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Also tested move and delete in TaxEditor.
@AM: Please review the move with position method.
Katja Luther

12/15/2022

03:34 PM Revision f60a1e5f (taxeditor): ref #10204: revert remove of json and other libraries
Katja Luther
03:27 PM Revision 4ea78047 (cdmlib): ref #10204: code cleaning
Katja Luther
03:27 PM Revision acbded93 (cdmlib): ref #10204: catch media parsing exceptions and code cleaning
Katja Luther
03:25 PM bug #10204 (Closed): GBIF search does not work due to missing json-lib
The Gbif search does not work in editor because some of the removed libraries are needed.
Katja Luther
09:58 AM Revision 988163c8 (cdmlib): fix missing treeIndex in TaxonNodeDto
Katja Luther

12/14/2022

10:54 PM feature request #10196: Hybrid structure-state terms
This is more or less fixed now and tested in Character editor and in matrix.
Not yet tested in PolytomousKeys(need...
Andreas Müller
11:30 AM feature request #10196 (Resolved): Hybrid structure-state terms
This should be mostly ready. Still need to handle open issues and test in TaxEditor (add voc to characters and in mat... Andreas Müller
09:48 PM Revision ad098825 (cdmlib): ref #10196 remove fixmes and replace by todos where minor open issues are
Andreas Müller
08:42 PM bug #10191: Error message on taxon specimen page for non-atomized specimens
NoK:
https://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/b335ceee-d6c1-4c93-841d-3b4bd27...
Andreas Müller
11:28 AM bug #10191 (Feedback): Error message on taxon specimen page for non-atomized specimens
This is definetely much better than before as the error messages are not shown anymore and the fields are filled with... Andreas Müller
08:32 PM Revision 070e2256 (cdmlib): ref #10196 further adapt IOs and service layer to hybrid states
Andreas Müller
08:16 PM Revision 17b5d25f (cdmlib): cleanup
Andreas Müller
08:02 PM Revision a183be96 (cdmlib): ref #10196 fix state and character/feature handling in RowWrapperDTO and description save
* by casting not filtering for term class Andreas Müller
07:59 PM Revision 3ccbd660 (cdmlib): cleanup
Andreas Müller
06:15 PM Revision 2bf2296c (taxeditor): ref #10196 allow Structures for StateVocabularyDtoCollectionElement
Andreas Müller
04:27 PM Revision b07fb70b (cdmlib): ref #10196 fix by findVocabulary by termtype list
Andreas Müller
03:24 PM Revision 7e47e3ba (cdmlib): cleanup
Andreas Müller
03:12 PM Revision 7205d591 (cdmlib): cleanup
Andreas Müller
03:00 PM Revision e4d54229 (cdmlib): cleanup
Andreas Müller
01:49 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Katja Luther wrote in #note-5:
> Andreas Müller wrote in #note-4:
> > Can you please review?
> >
> > This should...
Katja Luther
01:34 PM Revision 6b68bfb9 (cdmlib): ref #10198: implement test for moveTerm and fix move with position
Katja Luther
11:47 AM Revision da1315f1 (cdmlib): ref #6794 add deprecation and javadoc to OrderedTermVocabulary methods
Andreas Müller
11:45 AM bug #10190 (Feedback): Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
Generally this is fixed. The result can be seen on test e.g. at https://test.e-taxonomy.eu/dataportal/preview/cichori... Andreas Müller
11:42 AM Revision 40d3f39f (cdmlib): ref #10190 cleanup null check a bit
Andreas Müller
11:42 AM Revision b4f3c9fb (cdmlib): cleanup
Andreas Müller
11:04 AM bug #10192 (Feedback): External Links do not work in E+M
How can I test this? It is not yet pushed to production, or? And on test the updates are not yet installed as far as ... Andreas Müller
10:41 AM feature request #10194: Allow specimens as source for factual data
I guess we can close this ticket. Can you please do final review. Please also consider implementation in TaxEditor (#... Andreas Müller
10:39 AM feature request #10203 (New): Show specimen sources in publications
... (dataportal and print publication)
for details see #10194
Andreas Müller
10:36 AM feature request #10202 (Closed): Allow entering specimen in fact sources in taxeditor
... as an alternative to references. This was implemented in the model in #10194.
Maybe we should have a preferenc...
Andreas Müller
10:05 AM Revision 9e2e5157 (taxeditor): use TermTree.newFeatureInstance instead of newInstance
Katja Luther
09:22 AM Revision d59a2277 (cdmlib): cleaup and remove deprecated methods from TermTree
Andreas Müller
01:33 AM task #10201 (Resolved): Make synonym type an enum
still need to test taxeditor and fix dozer test Andreas Müller
12:40 AM Revision 1a16c318 (taxeditor): ref #10201 make synonym type an enum in taxeditor (adapt combo element)
Andreas Müller
12:33 AM Revision 73e75270 (cdmlib): ref #10201 make synonym type an enum in cdmlib (adapt dataset.dtd)
Andreas Müller
12:32 AM Revision 9451f4aa (cdm-vaadin): ref #10201 make synonym type an enum in vaadin (cont.)
Andreas Müller
12:09 AM Revision 1126d2a5 (cdm-vaadin): ref #10201, ref #10194 adapt testH2 in vaadin
Andreas Müller
12:09 AM Revision 4f3bf065 (taxeditor): ref #10201, ref #10194 adapt testH2 in taxeditor
Andreas Müller
12:07 AM Revision f0fda4e4 (cdmlib): ref #10201, ref #10194 adapt testH2 to cdmlib
Andreas Müller
12:00 AM Revision 88be1bfd (cdm-vaadin): ref #10201 make synonym type an enum in vaadin
Andreas Müller

12/13/2022

11:36 PM Revision 0905498c (cdmlib): ref #10194 fix missing specimen_id in test data
Andreas Müller
11:33 PM task #10201 (In Progress): Make synonym type an enum
Andreas Müller
04:40 PM task #10201 (Closed): Make synonym type an enum
.. as it is very stable and the representations are not really needed
Open issues:
* ~~vaadin~~
* ~~taxeditor~...
Andreas Müller
11:17 PM Revision 4821942d (taxeditor): ref #10201 Make synonym type an enum in taxeditor
Andreas Müller
11:17 PM Revision 64a6a386 (taxeditor): cleanup
Andreas Müller
11:12 PM Revision a777f3a7 (cdmlib): ref #10201 update script for synonym type change to enum
Andreas Müller
11:10 PM Revision 41e54b6e (cdmlib): cleanup
Andreas Müller
09:26 PM Revision 61d2eae8 (cdmlib): cleanup FreeTextSearchIntegrationTest incl. data
Andreas Müller
08:56 PM Revision 6029884c (cdmlib): cleanup
Andreas Müller
08:54 PM Revision 158aea27 (cdmlib): ref #10201 make synonym type an enum in cdmlib
Andreas Müller
08:54 PM Revision 1e26229c (cdmlib): cleanup
Andreas Müller
08:54 PM Revision c6365af5 (cdmlib): ref #10194 Add specimen to DescriptionElementSource (adapt test script and FullCoverageDataGenerator)
Andreas Müller
08:54 PM Revision 861b3cdc (cdmlib): ref #10194 Add specimen to DescriptionElementSource
Andreas Müller
08:54 PM Revision 67c36b25 (cdmlib): cleanup
Andreas Müller
08:53 PM Revision fbc590be (cdmlib): cleanup
Andreas Müller
01:46 PM Revision 7cf326ec (cdmlib): cleanup
Andreas Müller
12:58 PM Revision e0bcf884 (cdmlib): cleanup
Andreas Müller
12:57 PM Revision c1e0f30f (cdmlib): ref #6794 fix return type for orderindex
Andreas Müller
12:05 PM Revision 06f30d52 (taxeditor): ref #10199: adapt delete handler and operation to multi select deletion of terms
Katja Luther
12:01 PM Revision a86c1d74 (cdmlib): ref #10199: implement delete for a set of term uuids
Katja Luther
11:50 AM Revision cd05a561 (cdmlib-apps): ref #6794 remove OrderedTermBase in app-import
Andreas Müller
11:49 AM Revision c9fd74db (taxeditor): cleanup
Andreas Müller
11:49 AM Revision c10067d5 (taxeditor): ref #6794 remove OrderedTermBase from taxeditor
Andreas Müller
11:44 AM Revision 3fa6ded6 (cdmlib): cleanup
Andreas Müller
11:44 AM Revision 9c6f2a51 (cdmlib): ref #6794 remove OrderedTermBase in cdmlib
Andreas Müller
11:43 AM Revision b5bd681f (cdmlib): cleanup
Andreas Müller
11:42 AM Revision d60cb364 (cdmlib): ref #6794 helper for commit issue in OrderedTermBase removal
Andreas Müller
11:19 AM Revision b2a4c3c7 (cdm-vaadin): cleanup
Andreas Müller
10:40 AM Revision 0c6c3108 (taxeditor): ref #10199: allow multi-select for moving terms
Katja Luther
10:24 AM feature request #10199: Implement multi-select for terms in term vocabulary editor
Delete and the menu entry for moving is available only for a single term, but moving by drag & drop is already availa... Katja Luther

12/12/2022

10:42 PM Revision a7069102 (cdmlib): cleanup
Andreas Müller
05:58 PM feature request #10200 (New): Allow second vocabulary editor/view to compare vocabularies
NoK:
hilfreich wäre es auch, wenn sich ein Vokabular in 2 Fenstern öffnen ließe, damit das Vergleichen leichter is...
Andreas Müller
05:55 PM feature request #10199: Implement multi-select for terms in term vocabulary editor
Is this easy to implement? If yes, please implement in this milestone, otherwise move. Andreas Müller
05:54 PM feature request #10199 (Closed): Implement multi-select for terms in term vocabulary editor
... to move or delete terms
NoK:
was wir auf jeden Fall in Zukunft noch brauchen, ist die Verschiebung (und Lös...
Andreas Müller
04:48 PM Revision 993ef082 (cdmlib): ref #6794 Change OrderedTermBase to DefinedTermBase in CondensedDistributionComposer
Andreas Müller
04:47 PM Revision b96dcdf4 (cdmlib): cleanup
Andreas Müller
04:41 PM Revision 5a9b2f38 (taxeditor): cleanup
Andreas Müller

12/11/2022

11:20 PM Revision 81aaccdd (cdm-vaadin): cleanup
Andreas Müller
11:18 PM Revision 595fec37 (cdmlib-apps): adapt e-flora, pesi and app-import to latest changes
Andreas Müller
01:49 AM Revision d70fff5c (cdm-vaadin): ref #6794 reduce calls to isLower and isHigher in Rank class in vaadin
Andreas Müller
01:48 AM Revision 49520df1 (cdmlib-apps): ref #6794 reduce calls to isLower and isHigher in Rank class in app-import
Andreas Müller
01:45 AM Revision e19abe68 (cdmlib): cleanup
Andreas Müller
01:34 AM Revision fc422f9b (cdmlib): ref #6794 reduce calls to isLower and isHigher in Rank class (cont.)
Andreas Müller
01:31 AM Revision ad199dcf (cdmlib): cleanup and javadoc
Andreas Müller
01:30 AM Revision 6d7382df (cdmlib): ref #6794 reduce calls to isLower and isHigher in Rank class
Andreas Müller
01:07 AM Revision 9f27f852 (cdmlib): cleanup
Andreas Müller
01:01 AM Revision 0ded1664 (cdmlib-apps): Cleanup
Andreas Müller

12/09/2022

02:48 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Andreas Müller wrote in #note-4:
> Can you please review?
>
> This should include checking if term handling (espe...
Katja Luther
02:00 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Can you please review?
This should include checking if term handling (especially removal) in vocabularies still wo...
Andreas Müller
12:31 PM bug #10198 (Resolved): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Applied in changeset commit:cdmlib|d65295b4a60c6f5ce745eb3c07fc4cda88b8c418. Andreas Müller
12:29 PM bug #10198 (Closed): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
The termTree in OrderedTermVocabulary identifies entries via compareTo. The compareTo for OrderedTerms in the same vo... Andreas Müller
01:14 PM task #9008: Add chapter "Taxonomic concepts and source citations in the EDIT Platform" to documentation "Manual-EDIT-Platform"
WGB:
dieses Ticket ist erledigt – der Text war schon längere Zeit in Doku 4; ich habe mir nochmal die Ergänzungen ...
Andreas Müller
01:12 PM task #9008 (Closed): Add chapter "Taxonomic concepts and source citations in the EDIT Platform" to documentation "Manual-EDIT-Platform"
Andreas Müller
01:08 PM Revision 67a52da6 (taxeditor): ref #10196 adapt TaxEditor to hybrid structure states
Andreas Müller
12:35 PM Revision 880fb701 (cdmlib): minor and cleanup
Andreas Müller
12:30 PM Revision d65295b4 (cdmlib): fix #10198 fix term removal
Andreas Müller
10:55 AM Revision 427c9b3b (cdmlib): ref #10196 add methods to allow to search for vocabularies for >1 term types
Andreas Müller
10:46 AM Revision b869700f (taxeditor): cleanup
Andreas Müller
03:50 AM Revision df45fc99 (cdmlib): cleanup
Andreas Müller
03:41 AM Revision 94365b1b (cdmlib): ref #6794, ref #3327 remove *equal* methods from OrderedTermBase and -Vocabulary
Andreas Müller
03:33 AM Revision 11177ee7 (cdmlib): cleanup
Andreas Müller
03:14 AM Revision abaa6c56 (cdmlib): ref #10196 user DefinedTermBase<?> for hybrid states in cdmlib
Andreas Müller
02:03 AM Revision 131d91a0 (cdmlib): ref #10196 adapt supportedCategoricalEnumerations to hybrid states in cdmlib
Andreas Müller
02:01 AM Revision 0ebe3b3e (cdmlib): ref #10196 implement hybrid states with interface
Andreas Müller

12/08/2022

11:46 PM Revision d58b8e3f (taxeditor): cleanup
Andreas Müller
10:07 PM Revision 0f1e36bd (cdmlib): cleanup and maybe some issues related to ref #10196
Andreas Müller
06:36 PM Revision 3cdcfd06 (taxeditor): cleanup
Andreas Müller
01:43 PM Revision 574e585a (cdmlib): cleanup
Andreas Müller
11:34 AM bug #10197: Show empty page for delay while updating
One suggestion would be to clear the view until the update starts and then set the label to "Updating ... " while the... Katja Luther
11:22 AM feature request #10133: Improve ontology state vocabularies
AM:
als nächstes sollten wir uns mal die Duplikate anschauen.
Ich habe mal 2 Excel-Tabelle erstellt mit Duplika...
Andreas Müller
 

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