ref #6794 change FeatureTree to TermTree

ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

ref #8365 removing parentheses from code + accession number - again, adapting test

ignoring just the test() method in TaxonRelationshipsDTOTest

Revert "ignoring TaxonRelationshipsDTOTest"

This reverts commit 18b443282498e7bdbccadf14a861f6b474825297.

ignoring TaxonRelationshipsDTOTest

addinional RegistrationService test and a bit of cleaning up

ref #8354 implenting registration serch by taxonUUIDs which also covers typedesignations

using CleanSweepInsertLoadStrategy in SecurityTest

using CleanSweepInsertLoadStrategy in DerivedUnitConverterIntegrationTest

ref #7620 filtered registration search implemented with filter string for references

ref #8330 ref #7885 removing confusing typo in test data

ref #7885 tests for registration search by typified name and implementing order by

ref #8330 dao method for filtered registration search implemented: reprocduces existing functionality plus extended name search ref #7885

ref #8330 completing documentation regarding wildcards and fixing bug with MatchMode LIKE when using Restrictions

ref #8330 implementing tests for RegsitrationService.page and RegistrationWorkingsetService.pageDTO

ref #8182: adapt occurrence DTOs to use them in details page of blast result

ref #7433: changes to get dnaSample for genetic accession number

fix #8257 Remove factory methods for term node creation

add test for adding member to group

ref #8115: adapt test

ref #7433: add controller method to get dnaSample for given geneticAccessionnumber

minor

ref #8162 move FeatureTree and FeatureNode to term package

ref #8162 move OriginalSourceXXX to reference package

ref #8162 adapt cdmlip to new term package structure

ref #6794 fix termType settings in deleteTerms test and clean it up

fix some compilation issues with generics

ref #8017 add sources to TypeDesignationBase (cont.)

cleanup

ref #6794 remove setRoot from FeatureTree

fix #7372 make allowDuplicates configurable in FeatureTree

ref #8030 rename updateTitleCache to updateCaches

ref #8030 further tests

ref #8030 add tests for nameService (not yet finished) and fixing updateCache handling in TaxonName

ref #7874 fix incorrect nomTitle test

cleanup

ref #7874 adding missing testcase related to Person nomenclatural title genration

ref #7874 added reference to ticket to test

ref #7874 test for nomenclaturalTitle cache updater and fixing problem in IdentifiableServiceBase
which prevented from running the updater when titleCache was protected

minor

cleanup ClassificationServiceImplTest

cleanup ClassificationServiceImplTest

fixing wrong boolean operator combination for Restrictions with operator AND_NOT

ref #7939: add oderInderComnparator and use it in taxonnodeDtoRankAndNameComparator

ref #7932 first implementation of PreferenceResolver and some adaption to PreferenceService API.

• Correct handling of subtree subjects still open.
• Also creation of user defined subjects still open.

revert unwanted last commit

ref #7930 remove IWithDoi from IAuthoredPublicationBase

revert: Add series parsing with letters (test) - all unwanted commits

Add series parsing with letters (test)

ref #7709 fixing missing runAsAuthenticator for RunAsAdmin, TaxonGraphHibernateListener and test

removing useless annotation

cleanup

ref #7648 free configurable TaxonGraphHibernateListener ready

ref #7648 moving TaxonGraphHibernateListener and related classes into cdmlib-service

fix #7795 untilis xml DataSets can optionally be created without "[NULL]" values

ref #7783 assuring registrations have an identifier when saved - adapting test

adding additional testcase for QueryFactory

cleanup

ref #7764 fix failing synonym search with classification or subtree filter

fix #5868 restoring freetext search with leading wildcard and with empty query string, also fixes bug introduced while solving #4223

cleanup

fix #7757 first freetext search test working for subtree filter

ref #7745 add subtree parameter to freetext search methods

ref #7745 implement subtree filter for ClassificationController.rankSpecificRootNotes and .childNodes

avoiding too extensive logging by commenting all hardcoded loglevels

ref #7666 adding NARROW NO-BREAK after doubtful marker

ref #7553: move TypeDesignationSetmanagerTest to cdmlib

ref #6682 fix misapplication deduplication issues

ref #6682 further fixes for taxon relationship service - better separators

ref #6682 further fixes for taxon relationship service

ref #6682 further fixes for taxon relationship service

ref #6682 further fixes for taxonRelationship service

minor

fix test for getKindOfUnit

Merge branch 'develop' into feature/specimenPortal

ref #7590 fixing join types for restriction operations

fixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator - test implemented

cleanup

ref #7590 replacing not flag in restrictions by AND_NOT and OR_NOT operators

ref #7590 implementing AND and OR operator for restrictions and harmonizing code

first implementation for specimen page with DTOs

ref #7546 RegistrationIdentifierMinter can check for matching identifiers

Merge branch 'develop' into aggregation

Conflicts:¶

cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java¶

ref #7525 restoring all previously removed Criteria methods

fix #7525 replacing Criteria lists by cdm Restrictions in CdmEntityDaoBase.*ByTitle() methods

ref #7509 Implement service method for common parent taxon node + test

cleanup

cleanup

cleanup

cleanup

ref #7487 set test to ignore

ref #7487 fix ticket number 7486->7487

ref #7486 create test for pro parte search issue

rel #7478 implement pro parte synonym search in free text taxon and name search

fix #7486 fix taxon full text search if doTaxon is missing

Unignore tests

use long instead of int (cont.)

ref #3560, ref #5477 fix missing lucene index update for synonyms and misapplied names

ref #3560 further improve full text taxonAndName search for publish flag, including tests