EDIT

ref #9729, #9728, #9664 remove calls to deprecated method setNomenclaturalTitle

ref #9729, #9728, #9664 Adapt handling of nomenclaturalTitleCache setter and javadoc

ref #9340, #9734, #9668: further improvements for configurable sec handling during taxon(base) operations

cleanup

ref #9590 use boolean parameter newUuidForAcceptedTaxon instead of 2 different public methods

remove warnings

cleanup

cleanup

ref #9590 fix swap test by fixing SecundumSource clone method and remove incorrect Cascade.Delete handling in swap method

ref #9590: set test to ignore

ref #9590: add swapSynonymAndAcceptedTaxonNewUuid and test

ref #9590: fix test

ref #9590: fix test

ref #9590: add synonym with secundum reference to swap test

ref #9589: adapt test

ref #9327 add erronously deleted line

cleanup

Cleanup

ref #9520 fix ClassificationServiceImpl und TaxonServiceImplTest for non-cascading parent node

cleanup

ref #9340: fix handling of secundum for synonyms

add tests for different sec handling

cleanup

ref #9322 remove invalid designation relationship from cdmlib

ref #9171: search for pattern and ?+pattern to find doubtful taxa

cleanup

fix test

ref #8509 replace deprecated INameService.allRelationships for PESI RelTaxon export

ref #8398 adding codeEdition to NameRelationship constructors and to related add* methods in TaxonName and some more

ref #3472: make setting of name in source configurable

replace BlankDataSet.xml by ClearDBDataSet.xml

ref #8162 move OriginalSourceXXX to reference package

cleanup

adapt test

add test for misappliedname problem with type desinations

fix #7405 Rename WorkingSet to DescriptiveDataSet

ref #7392 remove cascade from relationships and adapt tests (up to service layer)

cleanup

cleanup tests in io and service

ref #6368 remove some further occurrences of ITaxonNameBase

ref 6368 fix compilation error in TaxonServiceImplTest

fix #6368 rename table and class TaxonNameBase

ref #6368 remove TaxonNameBase subclasses

change return type of changeSynonymToAcceptedTaxon to updateResult

ref #6362, ref #6365 remove occurrence of NonViralName, BotanicalName, ZoologicalName and others

#6401 update generics for java1.8 upgrade

ref #6401 Fix problems with generics due to jdk1.8

ref #6365 use TaxonNameFactory for botanical names

fix #6360 use TaxonNameFactory for NonViralNames

ref #6365 merge static methods from BotanicaName to TaxonNameBase

ref #6360 replace NonViralName factory methods

Cleanup merge model 4.1/develop

Merge remote-tracking branch 'origin/develop' into develop

Conflicts:
cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonNode.java
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImpl.java
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java...

ref #6099: removing cascading to child nodes and adapting the service and persistence layer

ref #5974 Replace synonymRelationshipType by SynonymType and replace some other occurrences of synonym relationship

ref #5974 Remove synonym relationship first compiling implementation in cdmlib

fix #6089 Remove taxonomicParentCache and taxonomicChildrenCount, fix Testdata

Fix failing test for syn. sec. (#5902) and clean up a bit

Remove generics from Reference in cdmlib (except for cdmlib-model) #5830

changes for #4960 and #4959

fix #5341 and fixing deletion of specimen

fix #5179 and adapting the tests because the classification argument is needed now

Correct test to save taxon before making servive layer call

#5056 Refactored 'save' call to return saved entity

• add @Audited to all type properties
• add taxonNodeComparator for rank and alphabetical orderedVocabularyDao
• change delete() methods arguments to UUIDs

DescriptionServiceImpl : added dao delete of description
OccurrenceServiceDeepDeleteTest : removed extra delete call
TaxonServiceImplTest : added testing of taxon.removeDescription

for infrageneric unranked rank adding unranked
fixing bug with deletion of names and homotypicalGroups

• change visibility of createTestDataSet to public

merge-update from trunk

• added abstract method createTestData() to CdmIntegrationalTest
  • method should be used for generatin test XML data sets
  • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....

merge-update from trunk

isDeletable returns DeleteResult

merge PresenceTerm and AbsenceTerm #4521

fix the test

return value of delete methods are DeleteResults

use doubtful parameter in included taxon service

update listIncludedTaxa #4045

implement listIncludedTaxa first version #4045

better use of generics in service layer and persistence list methods

if deletion of an object fails the method does not throw an exception but returns a message

add try-catch ReferencedObjectUndeletableException to all delete calls

delete terms

fixing deleting a taxon referenced by any other object is not possible

fix test for now stricter initialization strategy

fixed problem in testDeleteSynonymrelationship by using loadStrategy=CleanSweepInsertLoadStragtegy

fixing #3797 (StaleStateException caused during taxonNodeService.makeTaxonNodeASynonymOfAnotherTaxonNode())

avoiding concurrent modification exception

fixed problem with deletion of nodes.

merging delete functionality into trunk

some fixes for modell change branche

minor

test SecurityTest.testTaxonDeleteAllow_2() adapted, changed taxonService.delete(Taxon) to taxonService.deleteTaxon(Taxon) and adapted the xml file -> Ticket #3086
add a test for the deletion of the taxondescriptions (ticket #2982)

some changes for object deletion, especially the implementation of the childhandling.

deletionconfigurator tests and implementations

fixing delete functionality and adding tests

minor