Revision 9dc896c9 - fix #6368 rename table and class TaxonNameBase - EDIT - EDIT Project Management

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Revision 9dc896c9

Added by Andreas Müller almost 6 years ago

ID 9dc896c9a181487e9796e2ae7b0a1e2bfa9ff32a
Parent aff06aa4
Child 1f088ad4

fix #6368 rename table and class TaxonNameBase

added
modified
copied
renamed
deleted

cdmlib-ext
- src
  - main
    - java
      - eu
        etaxonomy
        cdm
        ext
        ipni
        IpniService.java (diff)
        occurrence
        gbif
        GbifJsonOccurrenceParser.java (diff)
        GbifResponse.java (diff)
cdmlib-io
- src
  - main
    - java
      - eu
        etaxonomy
        cdm
        io
        common
        CacheUpdater.java (diff)
        CacheUpdaterWithNewCacheStrategy.java (diff)
        CdmApplicationAwareDefaultExport.java (diff)
        CdmImportBase.java (diff)
        ImportHelper.java (diff)
        ImportStateBase.java (diff)
        mapping
        DbImportNameTypeDesignationMapper.java (diff)
        out
        DbDescriptionElementTaxonMapper.java (diff)
        DbOriginalNameMapper.java (diff)
        utils
        ImportDeduplicationHelper.java (diff)
        csv
        caryophyllales
        out
        CsvNameExport.java (diff)
        dwca
        in
        DatabaseMapping.java (diff)
        DwcTaxonStreamItem2CdmTaxonConverter.java (diff)
        GbifReferenceCsv2CdmConverter.java (diff)
        GbifTypesAndSpecimen2CdmConverter.java (diff)
        out
        DwcaResourceRelationExport.java (diff)
        DwcaTaxExport.java (diff)
        DwcaTypesExport.java (diff)
        excel
        common
        ExcelRowBase.java (diff)
        distribution
        DistributionImport.java (diff)
        taxa
        NormalExplicitImport.java (diff)
        jaxb
        CdmIDResolver.java (diff)
        DataSet.java (diff)
        JaxbExport.java (diff)
        JaxbImport.java (diff)
        markup
        MarkupNomenclatureImport.java (diff)
        MarkupSpecimenImport.java (diff)
        outputmodel
        OutputModelClassificationExport.java (diff)
        pilotOutputHtml
        PilotOutputDescriptionExporter.java (diff)
        PilotOutputDocumentBuilder.java (diff)
        PilotOutputExporter.java (diff)
        sdd
        in
        SDDImport.java (diff)
        out
        SDDCdmExporter.java (diff)
        SDDDataSet.java (diff)
        SDDDocumentBuilder.java (diff)
        specimen
        SpecimenImportBase.java (diff)
        excel
        in
        SpecimenCdmExcelImport.java (diff)
        SpecimenCdmExcelImportState.java (diff)
        SpecimenRow.java (diff)
        SpecimenSythesysExcelImport.java (diff)
        gbif
        in
        GbifImport.java (diff)
        stream
        StreamImportBase.java (diff)
        taxonx
        SimpleSpecimen.java (diff)
        TaxonXNomenclatureImport.java (diff)
        taxonx2013
        TaxonXAddSources.java (diff)
        TaxonXExtractor.java (diff)
        TaxonXTreatmentExtractor.java (diff)
        tcsrdf
        TcsRdfTaxonImport.java (diff)
        TcsRdfTaxonNameImport.java (diff)
        TcsRdfTaxonNameRelationsImport.java (diff)
        TcsRdfTaxonRelationsImport.java (diff)
        tcsxml
        in
        TcsXmlImportBase.java (diff)
        TcsXmlTaxonImport.java (diff)
        TcsXmlTaxonNameImport.java (diff)
        TcsXmlTaxonNameRelationsImport.java (diff)
        TcsXmlTaxonRelationsImport.java (diff)
    - resources
      - schema
        cdm
        name.xsd (diff)
  - test
    - java
      - eu
        etaxonomy
        cdm
        io
        dwca
        in
        DatabaseMappingTest.java (diff)
        DwcaImportIntegrationTest.java (diff)
        excel
        stream
        ExcelStreamImportTest.java (diff)
        taxa
        NormalExplicitImportTest.java (diff)
        jaxb
        SpecimenTest.java (diff)
        specimen
        abcd206
        in
        SpecimenImportConfiguratorTest.java (diff)
        excel
        in
        ExcelSpecimenImportExampleTest.java (diff)
        tcsxml
        TcsXmlImportConfiguratorTest.java (diff)
        test
        integration
        TestCdmDbComparator.java (diff)
    - resources
      - eu
        etaxonomy
        cdm
        database
        BlankDataSet.xml (diff)
        ClearDBDataSet.xml (diff)
        ClearDB_with_Terms_DataSet.xml (diff)
        io
        excel
        stream
        ExcelStreamImportTest.xml (diff)
        taxa
        NormalExplicitImportTest.testUuid.xml (diff)
        NormalExplicitImportTest.xml (diff)
        jaxb
        CdmImporterTest.testImport-result.xml (diff)
        CdmImporterTest.xml (diff)
        SpecimenTest.xml (diff)
        TaxonNameTest.xml (diff)
        specimen
        abcd206
        in
        SpecimenImportConfiguratorTest.doInvoke2.xml (diff)
        SpecimenImportConfiguratorTest.testIgnoreAuthorship.xml (diff)
        excel
        in
        ExcelSpecimenImportExampleTest.testResultSet-result.xml (diff)
        ExcelSpecimenImportExampleTest.xml (diff)
cdmlib-model
- src
  - main
    - java
      - eu
        etaxonomy
        cdm
        hibernate
        search
        DescriptionBaseClassBridge.java (diff)
        NomenclaturalSortOrderBrigde.java (diff)
        model
        CdmBaseType.java (diff)
        agent
        TeamOrPersonBase.java (diff)
        common
        IntextReference.java (diff)
        TermType.java (diff)
        package-info.java (diff)
        description
        DescriptionBase.java (diff)
        DescriptionElementBase.java (diff)
        DescriptionElementSource.java (diff)
        Feature.java (diff)
        TaxonNameDescription.java (diff)
        name
        BacterialName.java (diff)
        BotanicalName.java (diff)
        CultivarPlantName.java (diff)
        HomotypicalGroup.java (diff)
        HomotypicalGroupComparator.java (diff)
        HomotypicalGroupNameComparator.java (diff)
        HybridRelationship.java (diff)
        INonViralName.java (diff)
        ITaxonNameBase.java (diff)
        ITypeDesignation.java (diff)
        IZoologicalName.java (diff)
        NameRelationship.java (diff)
        NameRelationshipType.java (diff)
        NameTypeDesignation.java (diff)
        NameTypeDesignationStatus.java (diff)
        NomenclaturalCode.java (diff)
        NomenclaturalStatus.java (diff)
        NomenclaturalStatusType.java (diff)
        NonViralName.java (diff)
        Rank.java (diff)
        Registration.java (diff)
        SpecimenTypeDesignation.java (diff)
        SpecimenTypeDesignationStatus.java (diff)
        TaxonName.java
        TaxonNameBase.java
        TaxonNameComparator.java (diff)
        TaxonNameFactory.java (diff)
        TypeDesignationBase.java (diff)
        TypeDesignationStatusBase.java (diff)
        ViralName.java (diff)
        ZoologicalName.java (diff)
        occurrence
        DerivedUnit.java (diff)
        DeterminationEvent.java (diff)
        reference
        INomenclaturalReference.java (diff)
        Reference.java (diff)
        taxon
        HomotypicGroupTaxonComparator.java (diff)
        Synonym.java (diff)
        SynonymType.java (diff)
        Taxon.java (diff)
        TaxonBase.java (diff)
        TaxonComparator.java (diff)
        TaxonNode.java (diff)
        TaxonNodeByNameComparator.java (diff)
        TaxonNodeByRankAndNameComparator.java (diff)
        TaxonRelationshipType.java (diff)
        strategy
        cache
        agent
        PersonDefaultCacheStrategy.java (diff)
        name
        INameCacheStrategy.java (diff)
        INonViralNameCacheStrategy.java (diff)
        IViralNameCacheStrategy.java
        NameCacheStrategyBase.java (diff)
        NonViralNameDefaultCacheStrategy.java (diff)
        ViralNameDefaultCacheStrategy.java
        reference
        INomenclaturalReferenceCacheStrategy.java (diff)
        taxon
        ITaxonCacheStrategy.java (diff)
        TaxonBaseDefaultCacheStrategy.java (diff)
        TaxonBaseShortSecCacheStrategy.java (diff)
        homotypicgroup
        BasionymRelationCreator.java (diff)
        match
        MatchStrategyConfigurator.java (diff)
        merge
        ConvertMergeStrategy.java (diff)
        parser
        INonViralNameParser.java (diff)
        NonViralNameParserImpl.java (diff)
        validation
        constraint
        BasionymsMustShareEpithetsAndAuthorsValidator.java (diff)
        ChildTaxaMustDeriveNameFromParentValidator.java (diff)
        NameMustFollowCodeValidator.java (diff)
  - test
    - java
      - eu
        etaxonomy
        cdm
        aspectj
        PropertyChangeTest.java (diff)
        datagenerator
        TaxonGenerator.java (diff)
        model
        common
        IdentifiableEntityTest.java (diff)
        name
        BotanicalNameTest.java (diff)
        HomotypicalGroupTest.java (diff)
        NonViralNameTest.java (diff)
        TaxonNameBaseTest.java
        TaxonNameTest.java
        occurrence
        SpecimenTest.java (diff)
        taxon
        ClassificationTest.java (diff)
        HomotypicGroupTaxonComparatorTest.java (diff)
        TaxonBaseTest.java (diff)
        TaxonComparatorTest.java (diff)
        TaxonNodeTest.java (diff)
        TaxonTest.java (diff)
        strategy
        cache
        name
        NonViralNameDefaultCacheStrategyTest.java (diff)
        ZooNameNoMarkerCacheStrategyTest.java (diff)
        homotypicgroup
        BasionymRelationCreatorTest.java (diff)
        match
        DefaultMatchStrategyTest.java (diff)
        merge
        DefaultMergeStrategyTest.java (diff)
        parser
        NonViralNameParserImplTest.java (diff)
        test
        function
        TestFullReferenceParser.java (diff)
        TestSpecimen.java (diff)
        validation
        BasionymsMustShareEpithetsAndAuthorsTest.java (diff)
        NameMustFollowCodeTest.java (diff)
        TaxonNameCannotBeAcceptedAndSynonymTest.java (diff)
        ValidTypeDesignationTest.java (diff)
cdmlib-persistence
- src
  - main
    - java
      - eu
        etaxonomy
        cdm
        database
        data
        FullCoverageDataGenerator.java (diff)
        update
        SimpleSchemaUpdaterStep.java (diff)
        v31_33
        SchemaUpdater_31_33.java (diff)
        v35_36
        SchemaUpdater_35_36.java (diff)
        v36_40
        ReferencedObjTypeUpdater.java (diff)
        v41_47
        SchemaUpdater_41_47.java (diff)
        persistence
        dao
        description
        IDescriptionDao.java (diff)
        hibernate
        common
        DeduplicationHelper.java (diff)
        description
        DescriptionDaoImpl.java (diff)
        name
        TaxonNameDaoHibernateImpl.java (diff)
        occurrence
        OccurrenceDaoHibernateImpl.java (diff)
        reference
        ReferenceDaoHibernateImpl.java (diff)
        statistics
        StatisticsDaoHibernateImpl.java (diff)
        taxon
        TaxonDaoHibernateImpl.java (diff)
        initializer
        IBeanInitializer.java (diff)
        TitleAndNameCacheAutoInitializer.java (diff)
        name
        ITaxonNameDao.java (diff)
        occurrence
        IOccurrenceDao.java (diff)
        taxon
        ITaxonDao.java (diff)
        hibernate
        CdmPreDataChangeListener.java (diff)
        CdmSecurityHibernateInterceptor.java (diff)
        permission
        CdmPermissionClass.java (diff)
        voter
        TaxonNameBaseVoter.java
        TaxonNameVoter.java
    - resources
      - eu
        etaxonomy
        cdm
        hibernate.cfg.xml (diff)
        security_base.xml (diff)
  - test
    - java
      - eu
        etaxonomy
        cdm
        persistence
        dao
        BeanInitializerIntegration.java (diff)
        hibernate
        common
        CdmGenericDaoImplTest.java (diff)
        PreferenceDaoTest.java (diff)
        description
        DescriptionDaoHibernateImplTest.java (diff)
        name
        ConfigurableNameCacheStrategyGeneratorsTest.java (diff)
        RegistrationDaoHibernateImplTest.java (diff)
        TaxonNameDaoHibernateImplTest.java (diff)
        TestingBotanicalNameCacheStrategy.java (diff)
        TestingZoologicalNameCacheStrategy.java (diff)
        TypeDesignationDaoHibernateImplTest.java (diff)
        taxon
        ClassificationDaoHibernateImplTest.java (diff)
        TaxonDaoHibernateImplTest.java (diff)
        hibenate
        permission
        CdmPermissionClassTest.java (diff)
        hibernate
        CacheStrategyGeneratorTest.java (diff)
        CdmDeleteListenerTest.java (diff)
        SaveOrUpdateEntityListenerTest.java (diff)
        replace
        ReferringObjectMetadataFactoryTest.java (diff)
    - resources
      - eu
        etaxonomy
        cdm
        database
        ClearDB_with_Terms_DataSet.xml (diff)
        persistence
        dao
        BeanInitializerIntegration.xml (diff)
        hibernate
        FreeTextSearchIntegration.xml (diff)
        common
        CdmEntityDaoBaseTest.xml (diff)
        CdmGenericDaoImplTest.xml (diff)
        IdentifiableDaoBaseTest.xml (diff)
        description
        DescriptionDaoHibernateImplTest.testListTaxonDescriptionMedia.xml (diff)
        DescriptionDaoHibernateImplTest.xml (diff)
        IdentificationKeyDaoHibernateImplTest.xml (diff)
        media
        MediaDaoImplTest.xml (diff)
        name
        TaxonNameDaoHibernateImplTest.xml (diff)
        TypeDesignationDaoHibernateImplTest.testSaveTypeDesignations-result.xml (diff)
        TypeDesignationDaoHibernateImplTest.testSaveTypeDesignationsBidirectionalCascade-result.xml (diff)
        TypeDesignationDaoHibernateImplTest.testSaveTypeDesignationsCascadeFromSpecimen-result.xml (diff)
        TypeDesignationDaoHibernateImplTest.testSaveTypeDesignationsCascadeToSpecimen-result.xml (diff)
        TypeDesignationDaoHibernateImplTest.testSaveTypeDesignationsWithAuditing-result.xml (diff)
        TypeDesignationDaoHibernateImplTest.xml (diff)
        reference
        ReferenceDaoHibernateImplTest.xml (diff)
        taxon
        ClassificationDaoHibernateImplTest.listRankSpecificRootNodes.xml (diff)
        TaxonDaoHibernateImplTest.testDelete-result.xml (diff)
        TaxonDaoHibernateImplTest.testFind.xml (diff)
        TaxonDaoHibernateImplTest.testFindDeleted.xml (diff)
        TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml (diff)
        TaxonDaoHibernateImplTest.xml (diff)
        TaxonNodeDaoHibernateImplTest.testSortindexForJavassist.xml (diff)
        TaxonNodeDaoHibernateImplTest.xml (diff)
        hibernate
        CacheStrategyGeneratorTest.testOnSaveOrUpdateNames-result.xml (diff)
        CacheStrategyGeneratorTest.xml (diff)
        CdmDeleteListenerTest.testOnDelete-result.xml (diff)
        CdmDeleteListenerTest.xml (diff)
        Level2ValidationSaveOrUpdateEventListenerTest.xml (diff)
        replace
        ReferringObjectMetadataFactoryTest.testReplaceToOneProperty-result.xml (diff)
        ReferringObjectMetadataFactoryTest.xml (diff)
cdmlib-remote
- src
  - main
    - java
      - eu
        etaxonomy
        cdm
        remote
        controller
        DerivedUnitFacadeController.java (diff)
        NameController.java (diff)
        NameListController.java (diff)
        NamePortalController.java (diff)
        dto
        NameCatalogueController.java (diff)
        dto
        namecatalogue
        NameInformation.java (diff)
        NameSearch.java (diff)
        oaipmh
        SetSpec.java (diff)
        polytomouskey
        TaxonLinkDto.java (diff)
        json
        JsonConfigFactoryBean.java (diff)
        processor
        bean
        TaxonNameBaseBeanProcessor.java
        TaxonNameBeanProcessor.java
        matcher
        CdmProxyBeanProcessorMatcher.java (diff)
    - resources
      - eu
        etaxonomy
        cdm
        remote
        dto
        dwc
        mappings.xml (diff)
        tdwg
        mappings.xml (diff)
        json
        jsonConfigurations.xml (diff)
      - log4j.properties (diff)
  - test
    - resources
      - log4j.properties (diff)
cdmlib-remote-webapp
- src
  - main
    - resources
      - log4j.properties (diff)
  - test
    - resources
      - log4j.properties (diff)
cdmlib-services
- src
  - main
    - java
      - eu
        etaxonomy
        cdm
        api
        application
        FirstDataInserter.java (diff)
        facade
        DerivedUnitFacade.java (diff)
        service
        ClassificationServiceImpl.java (diff)
        DescriptionServiceImpl.java (diff)
        IDescriptionService.java (diff)
        INameService.java (diff)
        IOccurrenceService.java (diff)
        ITaxonService.java (diff)
        IdentifiableServiceBase.java (diff)
        NameServiceImpl.java (diff)
        OccurrenceServiceImpl.java (diff)
        StatisticsServiceImpl.java (diff)
        TaxonNodeServiceImpl.java (diff)
        TaxonServiceImpl.java (diff)
        config
        NameDeletionConfigurator.java (diff)
        lsid
        impl
        LsidAuthorityServiceImpl.java (diff)
        LsidRegistryImpl.java (diff)
        Pattern.java (diff)
        search
        CdmMassIndexer.java (diff)
        LuceneIndexToolProviderImpl.java (diff)
        LuceneSearch.java (diff)
        validation
        batch
        BatchValidationUtil.java (diff)
        validation
        constraint
        NoDuplicateNamesValidator.java (diff)
    - resources
      - eu
        etaxonomy
        cdm
        validation
        name
        TaxonName-Constraints.xml
        TaxonNameBase-Constraints.xml
  - test
    - java
      - eu
        etaxonomy
        cdm
        api
        facade
        DerivedUnitFacadeCacheStrategyInjectionTest.java (diff)
        DerivedUnitFacadeCacheStrategyTest.java (diff)
        DerivedUnitFacadeFieldUnitCacheStrategyTest.java (diff)
        DerivedUnitFacadeTest.java (diff)
        service
        AbstractSecurityTestBase.java (diff)
        AgentServiceImplTest.java (diff)
        ClassificationServiceDeepTest.java (diff)
        ClassificationServiceImplTest.java (diff)
        CommonServiceImplTest.java (diff)
        HandlingCdmEntitiesTest.java (diff)
        IdentifiableServiceBaseTest.java (diff)
        NameServiceImplTest.java (diff)
        OccurrenceServiceDeepDeleteTest.java (diff)
        OccurrenceServiceTest.java (diff)
        SecurityTest.java (diff)
        StatisticsServiceImplTest2.java (diff)
        TaxonNodeServiceImplTest.java (diff)
        TaxonServiceImplBusinessTest.java (diff)
        TaxonServiceImplTest.java (diff)
        TaxonServiceSearchTaxaAndNamesTest.java (diff)
        TaxonServiceSearchTest.java (diff)
        TransmissionEngineDistributionTest.java (diff)
        lsid
        LSIDAuthorityServiceTest.java (diff)
        datagenerator
        TaxonGenerator.java (diff)
        test
        function
        ConcurrentSessionTest.java (diff)
        Datasource.java (diff)
        TestService.java (diff)
        integration
        TestTaxonServices.java (diff)
    - resources
      - eu
        etaxonomy
        cdm
        api
        facade
        DerivedUnitFacadeCacheStrategyInjectionTest.xml (diff)
        service
        BlankDataSet.xml (diff)
        ClassificationServiceDeepTest.xml (diff)
        ClassificationServiceImplTest.xml (diff)
        CommonServiceImplTest.xml (diff)
        HandlingCdmEntitiesTest.xml (diff)
        IdentifiableServiceBaseTest.testFindByIdentifierOrMarker.xml (diff)
        IdentifiableServiceBaseTest.testUpdateTitleCache-result.xml (diff)
        IdentifiableServiceBaseTest.xml (diff)
        MediaDaoImplTest.xml (diff)
        NameServiceImplTest.xml (diff)
        OccurrenceServiceTest.testAllKindsOfSpecimenAssociations.xml (diff)
        OccurrenceServiceTest.testDeleteIndividualAssociatedAndTypeSpecimen.xml (diff)
        OccurrenceServiceTest.testFindOcurrences.xml (diff)
        OccurrenceServiceTest.testIsDeletableWithDescribedSpecimenInTaxonDescription.xml (diff)
        OccurrenceServiceTest.testIsDeletableWithIndividualsAssociationTaxonDescription.xml (diff)
        OccurrenceServiceTest.testIsDeletableWithTypeDesignation.xml (diff)
        OccurrenceServiceTest.testListAssociatedAndTypedTaxa.xml (diff)
        OccurrenceServiceTest.testListAssociatedTaxaAndListByAssociatedTaxon.xml (diff)
        OccurrenceServiceTest.xml (diff)
        SecurityTest.xml (diff)
        StatisticsServiceImplTest2.xml (diff)
        TaxonNodeServiceImplTest.testGetUuidAndTitleCacheHierarchy.xml (diff)
        TaxonNodeServiceImplTest.xml (diff)
        TaxonServiceImplTest.testDeleteSynonym.xml (diff)
        TaxonServiceImplTest.testInferredSynonyms.xml (diff)
        TaxonServiceImplTest.testMoveSynonymToAnotherTaxon.xml (diff)
        TaxonServiceImplTest.xml (diff)
        TaxonServiceSearchTaxaAndNamesTest.xml (diff)
        TaxonServiceSearchTest.xml (diff)
        TransmissionEngineDistributionTest.xml (diff)
        lsid
        LSIDAuthorityServiceTest.testGetAvailableServices.xml (diff)
        LSIDRegistryTest.xml (diff)
        database
        ClearDB_with_Terms_DataSet.xml (diff)
        test
        function
        ConcurrentSessionTest.xml (diff)
        validation
        ValidationTest.xml (diff)
cdmlib-test
- src
  - main
    - java
      - eu
        etaxonomy
        cdm
        test
        integration
        CdmTransactionalIntegrationTestExample.java (diff)
    - resources
      - dbscripts
        001-cdm.h2.sql (diff)
      - eu
        etaxonomy
        cdm
        database
        ClearDBDataSet.xml (diff)
        ClearDB_with_Terms_DataSet.xml (diff)
        schema
        dataset.dtd (diff)
        services_base_test.xml (diff)
  - test
    - resources
      - eu
        etaxonomy
        cdm
        hibernate.cfg.xml (diff)