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From 05/02/2016 to 05/31/2016

05/31/2016

07:53 PM Revision 85c830d1 (taxeditor): Unnecessary renaming operations removed from POM.
Apache commons.collections dependency is now copied and exported. Ben Stöver
07:33 PM Revision 1ae7079e (taxeditor): POM in molecular.lib corrected.
Ben Stöver
07:13 PM Revision 1c956e61 (taxeditor): Solved TODO removed.
Ben Stöver
07:12 PM Revision 62689714 (taxeditor): MANIFEST in molecular.lib adjusted to use SNAPSHOT releases again.
Ben Stöver
06:14 PM Revision cdd22c19 (taxeditor): molecular.lib depencies reset to SNAPSHOT versions for this branch.
Ben Stöver
06:02 PM Revision 984a510c (cdm-server): Merge branch 'release/4.1.0' into develop
jenkins
06:01 PM Revision 6dadcae9 (cdm-server): updating poms for branch'release/4.1.0' with non-snapshot versions
jenkins
05:59 PM Revision fe5b62f1 (cdm-server): setting sourceEncoding to UTF-8
Andreas Kohlbecker
05:54 PM feature request #5848: Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
As far as I figured that out the problem is not related to using network or local folders but to the usage of UNC pat... Ben Stöver
05:37 PM feature request #5848 (Closed): Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
When a user has its home folder set to a network drive the creation of the data model fails (Right-click in data sour... Patrick Plitzner
05:50 PM Revision a5bb5492 (taxeditor): Merge branch 'develop' into LibrAlign
Patrick Plitzner
05:43 PM Revision e40c7b47 (cdm-vaadin): Add direct lucene dependencies to pom file to fix conflict
Patrick Plitzner
05:38 PM Revision 47abb11e (cdm-webapp): Merge branch 'release/4.1.0' into develop
jenkins
05:38 PM Revision ba7b8194 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
05:38 PM Revision 31224c1d (cdm-webapp): updating poms for branch'release/4.1.0' with non-snapshot versions
jenkins
05:38 PM Revision 1b899fd0 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.1.0
jenkins
05:37 PM Revision 533dba43 (cdm-vaadin): Merge branch 'release/4.1.0' into develop
jenkins
05:37 PM Revision 6c16b4a0 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
05:35 PM Revision 929ab26d (cdm-vaadin): updating poms for branch'release/4.1.0' with non-snapshot versions
jenkins
05:34 PM Revision 274808ac (cdm-vaadin): jenkins bumping cdmlib.version to 4.1.0
jenkins
05:29 PM Revision f277a761 (cdm-vaadin): pom.xml merge strategy for gitflow releases
Andreas Kohlbecker
04:50 PM Revision aeb02f63 (taxeditor): Merge branch 'release/4.1.0' into develop
jenkins
04:50 PM Revision 6edbda86 (taxeditor): Merge branch 'release/4.1.0'
jenkins
04:47 PM Revision 87601aa9 (cdm-vaadin): jenkins bumping cdmlib.version to 4.1.0
jenkins
04:47 PM Revision 59ef8447 (cdm-dataportal): Merge branch 'release/4.1.0' into develop
jenkins
04:46 PM Revision dccc3029 (cdm-dataportal): updating poms for branch'release/4.1.0' with non-snapshot versions
jenkins
04:46 PM Revision dd92fd33 (cdm-dataportal): release-preparation: production level css
jenkins
04:46 PM Revision 2944f86b (cdmlib): Updating develop poms back to pre merge state
jenkins
04:46 PM Revision 28f2835e (cdmlib): Merge branch 'master' into develop
jenkins
04:46 PM Revision 723ecfe6 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
04:46 PM Revision 4cf243db (cdmlib): Merge branch 'release/4.1.0'
jenkins
04:42 PM feature request #5697: Show name conserved against as [non xxx]
now that the dataportal installation problems on edit-production are solved the "non xxx" are no longer missing:
ht...
Andreas Kohlbecker
04:28 PM Revision 7224d141 (cdmlib): updating poms for branch'release/4.1.0' with non-snapshot versions
jenkins
02:34 PM Revision eaca0f55 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.1.0-SNAPSHOT
jenkins
02:34 PM Revision b5246cad (cdm-webapp): updating poms for 4.2.0-SNAPSHOT development
jenkins
02:34 PM Revision 7b031b55 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.2.0-SNAPSHOT
jenkins
02:29 PM Revision 2939ccbf (taxeditor): Updated version in pom / project files to taxeditor version : 4.2.0-SNAPSHOT and cdmlib version : 4.2.0-SNAPSHOT
jenkins
02:29 PM Revision 4c596fab (taxeditor): Updated version in pom / project files to taxeditor version : 4.1.0 and cdmlib version : 4.1.0
jenkins
02:28 PM Revision 59019a71 (cdm-vaadin): jenkins bumping cdmlib.version to 4.1.0-SNAPSHOT
jenkins
02:28 PM Revision 476a0584 (cdm-vaadin): updating poms for 4.2.0-SNAPSHOT development
jenkins
02:28 PM Revision 6fa8fff7 (cdm-vaadin): jenkins bumping cdmlib.version to 4.2.0-SNAPSHOT
jenkins
02:28 PM Revision 73ee8e27 (cdm-dataportal): updating poms for 4.2.0-SNAPSHOT development
jenkins
02:28 PM Revision 714ac08c (cdm-server): updating poms for 4.2.0-SNAPSHOT development
jenkins
02:25 PM Revision fa006906 (cdmlib): updating poms for 4.2.0-SNAPSHOT development
jenkins
01:55 PM Revision 0266f11b (taxeditor): Merge branch 'develop' into LibrAlign
Patrick Plitzner
01:41 PM Revision e8af0ea6 (taxeditor): Cleanup ProxyUtils
Andreas Müller
01:29 PM bug #5632: ClassNotFoundException for org.eclipse.jetty.servlet.listener.ELContextCleaner during taxeditor mvn integration-test
with fixing #5812 this became more critical as the test does not run anymore as the exception is handled correctly no... Andreas Müller
01:26 PM bug #5632: ClassNotFoundException for org.eclipse.jetty.servlet.listener.ELContextCleaner during taxeditor mvn integration-test
with fixing
Andreas Müller
01:09 PM Revision f41311d1 (taxeditor): cleanup
Andreas Müller
01:09 PM Revision ea331148 (taxeditor): Update java compiler compliance level 1.6 -> 1.7 in TaxEditor
Andreas Müller
01:09 PM feature request #5847 (New): translation, internationalization of advanced Search links & Search page Titles
This is a split off from #5665
Advanced Search links & Search page Titles:
* The secondary links in the adv...
Andreas Kohlbecker
01:03 PM bug #5492: Doubtful synonyms and misapplied names to be displayed correctly
Replying to [[comment8|a.mueller]]:
> is #5753 already implemented for this ticket?
This is done now!
Andreas Kohlbecker
01:02 PM Revision 1496233a (cdm-dataportal): #5753 small questionmark as doubtful marker
Andreas Kohlbecker
12:47 PM Revision 9867492a (cdm-dataportal): Merge branch 'hotfix/3.12.1' into develop
Conflicts:
modules/cdm_dataportal/theme/cdm_dataportal.references.theme
Andreas Kohlbecker
12:10 PM Revision 847b673a (taxeditor): temporarily set test to ignore for release #5846
Patrick Plitzner
11:56 AM Revision a9c33db7 (taxeditor): Set molecular plugins to fixed version number
Patrick Plitzner
11:41 AM Revision 64879c3f (cdmlib-apps): Set source ref for taxa #5448
Patrick Plitzner
11:38 AM Revision e6e8883a (taxeditor): Merge branch 'develop' into LibrAlign
Patrick Plitzner
11:21 AM Revision 93e35cec (taxeditor): Show message when data model creation was succeessful and refresh data
source view #5758 Patrick Plitzner
09:52 AM Revision 272fafc3 (taxeditor): Add fallback to getView() if no active workbench is found #5758
Patrick Plitzner

05/30/2016

06:13 PM Revision ecb8526d (cdm-dataportal): #3633 avoiding the red error box as long #4644 is not fixed
Andreas Kohlbecker
05:46 PM Revision 4d304392 (cdm-dataportal): fixing class selector which has been changed in #5790
Andreas Kohlbecker
05:37 PM Revision 9185bfdc (cdm-dataportal): removing js library jquery.dimensions
Andreas Kohlbecker
05:35 PM Revision faf4f771 (cdm-dataportal): removing js library jquery.scrollTo
Andreas Kohlbecker
05:22 PM Revision f4335b0e (taxeditor): Throw exception when server startup fails #5812
Patrick Plitzner
05:12 PM Revision 43adce45 (cdm-dataportal): #5790 changing trigger event for children display
Andreas Kohlbecker
05:12 PM Revision 27f6df13 (cdm-dataportal): #5790 avoiding layout irritations through taxontree module
Andreas Kohlbecker
05:12 PM Revision 8e1331ef (cdm-dataportal): #5790 hover effect for trigger button
Andreas Kohlbecker
05:12 PM Revision b0adfd32 (cdm-dataportal): #5790 classification breadcrumb children implemented
Andreas Kohlbecker
05:12 PM Revision f4cc620d (cdm-dataportal): fixing area_filter_preset size limitation
Andreas Kohlbecker
05:12 PM Revision bf66e84a (cdm-dataportal): initial commit for breadcrumb-children feature
Andreas Kohlbecker
05:12 PM Revision d0d23caa (cdm-dataportal): initial commit for breadcrumb-children feature
Andreas Kohlbecker
02:41 PM Revision 58e52cf0 (taxeditor): Add caution about deleted data to dialog for data model creation #5758
Andreas Müller
02:29 PM Revision ac852ffb (taxeditor): Remove test server information from CdmServerInfo #5769
Andreas Müller
02:00 PM Revision a19d4abb (taxeditor): moved "Open in..." down and added separator #5406
Patrick Plitzner
01:42 PM feature request #5844 (Closed): Make stable identifier clickable in default specimen tab
split from #5515
The persistent stable identifier in the specimen tab should be clickable. Currently it is shown...
Andreas Müller
01:18 PM Revision 217d241a (taxeditor): sec microRef should be orange if the titleCache is protected
Katja Luther
10:47 AM Revision 65434a68 (taxeditor): Fix saving of ScopeRestriction for PolytomousKey #5280
Patrick Plitzner
10:47 AM Revision 231d61a4 (taxeditor): Used UnboundEntityCollectionSection to avoid the saving of dummy terms
#5280 Patrick Plitzner
10:22 AM Revision cefdede1 (cdmlib-apps): Improve taxon name check #5448
Patrick Plitzner

05/27/2016

03:34 PM feature request #5841 (Closed): Creating a new alternative in PolytomousKey Editor should set focus to new PKNode
Creating a new alternative in PolytomousKey Editor should set focus to new PKNode
Andreas Müller
02:44 PM feature request #5839 (Duplicate): Improve error message when server can't be reached
Currently it says "Problem accessing remote server. Please contact EDIT Support xxx".
It better should say somet...
Andreas Müller
02:04 PM Revision 6dc12241 (cdmlib): Reflect missing name taxon cache strategies #5838
Andreas Müller
01:11 PM Revision edc26f70 (cdmlib): Fix empty secMicroReference #5766
Andreas Müller
12:05 PM Revision f780e7d4 (taxeditor): Typo in orphaned taxon message #5824
Andreas Müller
11:54 AM feature request #5836: Rename the abbrev titlecache in Reference Details View
No, the Abbrev. Cache should be renamed to "Nomenclatrual Cache" or "Nomencl. Cache".
The Abbrev. Title should for ...
Andreas Müller
10:21 AM feature request #5836 (Resolved): Rename the abbrev titlecache in Reference Details View
see r28103
Katja Luther
10:01 AM feature request #5836 (Closed): Rename the abbrev titlecache in Reference Details View
The abbrev titleCache of references is the nomenclatural Cache now, therefore it should be renamed in the details vie... Katja Luther
10:20 AM Revision bbbc7c78 (taxeditor): #5836
Katja Luther
02:04 AM Revision 87d0418a (taxeditor): Cache for TaxonNodes #5835
Andreas Müller
02:03 AM Revision e63e5912 (cdmlib): getTitleWithoutYearAndAuthor as Generic for all Non-NomRefs #5833
Andreas Müller
01:49 AM Revision 8141f117 (taxeditor): Fix NPE in DescriptionHelper #5835
Andreas Müller
01:21 AM Revision a799db81 (taxeditor): Improve DescriptionHelper / Referencing objects label provider #5835
Andreas Müller

05/26/2016

11:55 PM Revision 26150f5e (taxeditor): Fix compilation issue in ReferenceDetailElement #5833
Andreas Müller
09:48 PM bug #1815 (Resolved): setInReference needs to reset the title cache
Fixed by r28097
Andreas Müller
09:46 PM Revision eda6214b (cdmlib): Fix failing inReference cache reset #1815
Andreas Müller
09:32 PM Revision 9ce8ca04 (cdmlib): minor
Andreas Müller
09:30 PM Revision d1d6cba9 (cdmlib): Add getCacheStrategy to IReference #5833
Andreas Müller
09:26 PM Revision af5e38cf (cdmlib): revert last commit
Andreas Müller
09:23 PM Revision 8e9a7092 (cdmlib): minor
Andreas Müller
09:20 PM Revision 3ae0ff5d (cdmlib): minor
Andreas Müller
07:07 PM bug #1924: CIHORIEAE in-references in Footnotes
Probably this is cache strategy related. Therefore change owner and component.
Andreas Müller
06:51 PM Revision b9142704 (taxeditor): Fix adaptation for new default reference cache strategy #5833
Andreas Müller
05:49 PM Revision 71cecb32 (cdmlib): Further cleanup and rename new default cache strategy to default cache strategy #5833
Andreas Müller
05:32 PM feature request #5833: Implement single cache strategy for references
[28085:28090]
Andreas Müller
04:03 PM feature request #5833: Implement single cache strategy for references
implemented the following by cdmlib 9db62d494989
* Implemented new class NewDefaultReferenceCacheStrategy and helpe...
Andreas Müller
03:38 PM feature request #5833 (In Progress): Implement single cache strategy for references
Andreas Müller
05:31 PM bug #5834 (Closed): Show volume etc. for generic references
... and also for some other references.
Split from #2862: The current DefaultReferenceCacheStrategy does not han...
Andreas Müller
05:24 PM Revision 87d7d6ff (cdmlib): Remove all old reference cache strategies completely #5833
Andreas Müller
05:22 PM Revision d774802a (cdmlib): Further clean up reference cache strategies #5833
Andreas Müller
04:57 PM Revision bc556475 (cdmlib): Some further cleaning up for single reference cache strategy #5833
Andreas Müller
04:12 PM Revision 16856326 (taxeditor): Fix bug using external method of NewDefaultReferenceCacheStrategy #5833
Andreas Müller
03:58 PM Revision 9db62d49 (cdmlib): Implement single cache strategy for references #5833
* Implemented new class NewDefaultReferenceCacheStrategy and helper
class TitleWithoutYearAndAuthorHelper
* Moved al...
Andreas Müller
02:55 PM Revision 1e4e650e (cdmlib): smaller changes in TaxonNode
Katja Luther

05/25/2016

05:33 PM Revision d2cd9972 (taxeditor): Fix order of wizard pages in new taxon wizard #2402
Patrick Plitzner
05:28 PM Revision 0ec16ff8 (cdmlib): Implement isOrphaned() #5824
Synonym counts as orphaned if all of the accepted taxa are orphaned Patrick Plitzner
05:27 PM Revision ab3c9b28 (taxeditor): Improve message for orphaned taxa/synonyms #5824
Patrick Plitzner
05:21 PM Revision 3aeb8b56 (taxeditor): Fix label issue for classification with no label
Patrick Plitzner
03:20 PM Revision 8600c13a (taxeditor): Remove unused class
Patrick Plitzner
03:15 PM feature request #5833 (Closed): Implement single cache strategy for references
The new single default cache strategy for Reference.
As we do have only one Reference class left which implement...
Andreas Müller
02:47 PM Revision 6a4a8e82 (taxeditor): Trim code
Patrick Plitzner
02:44 PM Revision 0b4fb2cc (taxeditor): Remove bulk editor for name relations from menu #5788
- also fix possible NPE Patrick Plitzner
02:15 PM bug #1815: setInReference needs to reset the title cache
Is this still an open issue?
Andreas Müller
01:41 PM Revision 43788452 (taxeditor): fix #5821
Katja Luther
01:40 PM Revision 4a39cd98 (cdmlib): Show stable identifier in specimen page (if present) #5515
Patrick Plitzner
01:39 PM Revision 1cefb4e5 (cdm-dataportal): Show stable identifier in specimen page (if present) #5515
Patrick Plitzner
01:20 PM Revision d3759748 (taxeditor): Implement preferred stable Identifier for Specimen in TaxEditor #5764
Patrick Plitzner
01:06 PM Revision ec574f77 (taxeditor): Remove generics from Reference in TaxEditor #5830
Andreas Müller
12:57 PM Revision 61e07907 (taxeditor): fix #5379
Katja Luther
12:52 PM Revision 8422c0cd (cdmlib-apps): Remove generics from Reference in cdmlib-app #5830
Andreas Müller
12:26 PM Revision c81db8d5 (cdmlib): Remove generics from Reference itself (may lead to compile errors in TaxEditor and Vaadin) #5830
Andreas Müller
12:11 PM Revision 531fc7bc (cdmlib): Remove generics from Reference in cdmlib (except for cdmlib-model) #5830
Andreas Müller
12:04 PM Revision bfb43946 (taxeditor): minor
Katja Luther
12:04 PM Revision 7288e06c (taxeditor): fix #5766
Katja Luther
11:37 AM bug #5832 (New): It is not possible to search for hybrids in taxon search
For example:
1. Create taxon Achillea millefolium × Achillea nobilis in the navigator
1. Three names will be cr...
Patrick Plitzner
11:22 AM Revision 90046bc4 (cdmlib): Remove generics from Reference in cdmlib-model #5830
Andreas Müller
11:22 AM Revision fd8764da (cdmlib): Javadoc
Andreas Müller
11:18 AM Revision aeb5ba21 (taxeditor): Add missing service method #5829
Patrick Plitzner
11:15 AM Revision 546da7cf (taxeditor): close delete dialog skips the delete fix #5806
Katja Luther
10:56 AM Revision ec36a313 (taxeditor): fix #5711
Katja Luther
10:50 AM Revision ddc7c62b (taxeditor): minor
Katja Luther
10:46 AM Revision 91433290 (taxeditor): add nomenclaturalAuthorselection dialog
Katja Luther
10:46 AM Revision e765dbb3 (taxeditor): selectiondialog for nomenclatural authors should work on nomenclatural
title Katja Luther
10:29 AM Revision 7ec9b1d9 (cdmlib): new method to get UuidAndTitleCache objects with nomenclatural
titleCache for teamOrPersonBase Katja Luther
10:27 AM Revision 7c5a1cc8 (cdmlib): Set failing SecurityTest to ignore #5829
Andreas Müller
10:25 AM Revision 64cd7355 (cdmlib-apps): Improve logging messages #5448
Patrick Plitzner
10:24 AM Revision a1c44317 (cdmlib-apps): Add SEQNUM #5448
Patrick Plitzner
10:24 AM Revision 74525264 (cdmlib-apps): Import hybrid formulas #5448
Patrick Plitzner
09:59 AM Revision e15e85f7 (cdmlib): Handle empty result for titleCache generation #5763
Andreas Müller

05/24/2016

10:33 PM Revision ce952255 (taxeditor): Cleaning up ProtologueSection #5638
Andreas Müller
10:28 PM Revision f8828bfd (taxeditor): minor
Andreas Müller
04:44 PM Revision 4ae09d10 (cdmlib-apps): Add taxa to classifications #5448
Patrick Plitzner
03:32 PM Revision b330e10d (taxeditor): Merge branch 'develop' into LibrAlign
Patrick Plitzner
03:32 PM Revision 02f8291a (taxeditor): fix git commit
Patrick Plitzner
03:11 PM Revision 0a3f4fb6 (taxeditor): minor
Katja Luther
03:04 PM bug #5826 (Closed): Clean up names with empty name descriptions
As described in #5638 many empty NameDescriptions have been created in the past. These should be deleted from the dat... Andreas Müller
02:57 PM Revision a41769e5 (taxeditor): minor
Katja Luther
02:09 PM feature request #5554: Allow parsing of lat/long with different minute/second characters
Is this still an open issue?
Andreas Müller
11:15 AM Revision 7b8945e9 (taxeditor): the version of h2 info was duplicated
Katja Luther
11:11 AM Revision 2a74d594 (cdmlib): Inline Country term to avoid NPE #5765
Patrick Plitzner
10:32 AM Revision 30c47554 (taxeditor): fix test
Katja Luther
10:28 AM Revision a9cb0bc8 (cdmlib-apps): Correctly set relationship direction #5448
Patrick Plitzner
10:28 AM Revision bac828e0 (cdmlib-apps): Import concept relations E, W, K, AW, AO, R, O, S #5448
Patrick Plitzner
10:27 AM Revision 5089d8d9 (taxeditor): fix test
Katja Luther
10:18 AM Revision dd67df76 (taxeditor): set the failing test to ignore, I will fix it tomorrow
Katja Luther
10:15 AM Revision af4cc806 (cdmlib): fix polytomouskey delete, if root node is null
Katja Luther

05/23/2016

07:41 PM Revision f3f4d328 (cdmlib-apps): Refactor names and taxa creation #5448
Patrick Plitzner
07:17 PM Revision d72d4db9 (cdmlib-apps): Add 8 more classifications #5448
Patrick Plitzner
05:53 PM Revision 48cd39f3 (cdmlib-apps): improve taxon name check #5448
- add new string constants Patrick Plitzner
05:39 PM Revision 64efeeb7 (cdmlib): Add preferred stable URI to Derived Unit Facade #5765
Andreas Müller
04:31 PM Revision c9ec6fc8 (cdmlib-apps): Set trinomial hybrids #5448
- improve taxon name check Patrick Plitzner
04:25 PM Revision b2a2e465 (cdmlib): Add secundum micro reference to cache strategy #5767
Andreas Müller
03:47 PM Revision 1726e8f0 (cdmlib-apps): Avoid duplicate UUIDs by fixing the order of adding original sources
#5448 Patrick Plitzner
03:44 PM feature request #5795: [DISCUSS] Do we need comb. ined. as a nomenclatural status?
Hallo Norbert,
ich sehe gerade, dass du in http://dev.e-taxonomy.eu/trac/ticket/3046#comment:4 eigentlich Combinati...
Andreas Müller
03:44 PM feature request #5795: [DISCUSS] Do we need comb. ined. as a nomenclatural status?
Hallo,
ich habe nichts dagegen – nur das die Liste der Abkürzungen länger wird. Kann man da eigentlich die Reihenfo...
Andreas Müller
02:53 PM Revision c43ce745 (taxeditor): revert the last commit of this file
Katja Luther
02:10 PM Revision 589a5c0f (taxeditor): Fix session disposal #5694
Patrick Plitzner
01:21 PM Revision 251eb633 (taxeditor): revert the last commit of this file
Katja Luther
12:54 PM bug #5823 (Worksforme): Fehler beim parallel Editieren von Referenzen
split of #5694
More general ticket can be found here: #5980
Hallo, hier noch ein solcher Fall, aber diesmal...
Andreas Müller

05/22/2016

10:24 AM Revision 8f6337ac (cdmlib-apps): Handle hybrid names (only binomial at the moment)
Patrick Plitzner
10:23 AM Revision 268abe46 (cdmlib-apps): Fix typo
Patrick Plitzner

05/21/2016

10:12 AM feature request #5815: Reverse label for features
implemented by [r28019|[28022:28024]]
Remaining issue: indexing, currently commented as it creates LIEs while index...
Andreas Müller
01:44 AM Revision aeed5cfb (cdmlib): Add jaxb annotation for reverse representation #5815
Andreas Müller
01:27 AM Revision 42521ec5 (cdmlib): Remove indexing from reverse feature representation #5815
Andreas Müller
12:50 AM Revision 1e88ae89 (cdmlib): Define column name for feature inverse representation #5815
Andreas Müller
12:42 AM Revision 0fac705a (cdmlib): Move factory methods up (Feature)
Andreas Müller
12:41 AM Revision 70545d28 (cdmlib): Move static constants to top (Feature)
Andreas Müller

05/20/2016

01:17 PM Revision 23b11e25 (cdmlib): Add inverse representation to feature #5815
Andreas Müller
01:09 PM feature request #5817 (Closed): Rename RelationshipTermBase_inverseRepresentation
... to TermBase_inverseRepresentation as this is also used by Feature.
Also rename column relationshipTermBase_id ...
Andreas Müller
11:26 AM Revision 60bb7bf5 (taxeditor): fix #5816
Katja Luther
11:14 AM Revision fc441479 (cdmlib): Add getter/setter for secMicroReference #5717
Andreas Müller
11:14 AM Revision cebe86ae (cdmlib): remove sortFieldOptions (old lucene)
Andreas Müller
11:08 AM feature request #5815 (In Progress): Reverse label for features
Features that support TaxonInteraction or IndividualsAssociation (but maybe also CommonNames, Distributions and Quant... Andreas Müller

05/18/2016

03:13 PM Revision f586dcf5 (cdmlib-apps): Fix ClassCastException and ordering #5452
Patrick Plitzner
02:56 PM Revision 6ad13c4b (cdmlib-apps): Refactor constants
Patrick Plitzner
12:41 PM Revision dd244f30 (taxeditor): fix for #5638
Katja Luther
09:31 AM Revision 0b2466d9 (cdmlib-apps): Ordering of XML elements and some refactoring #5452
Patrick Plitzner

05/17/2016

03:29 PM Revision c35d72cd (taxeditor): add symbol to DefinedTerm details view
Katja Luther
02:51 PM Revision bf692139 (cdmlib): fix delete of polytomous keys
Katja Luther
02:49 PM Revision f30ec5df (taxeditor): fixing the deletion of polytomous keys
Katja Luther
01:06 PM Revision 2387a634 (taxeditor): add PolytomousKeyService to CdmStore.getService and EditFromSelectionWizard
Katja Luther
09:35 AM Revision 8c54ac7b (taxeditor): More i18n for #5758
Patrick Plitzner

05/13/2016

04:15 PM feature request #5807 (New): Implement sub-distribution area inclusion in TaxonService.findTaxaAndNamesByFullText()

for example: 'Campanula alliariifolia' is not found when using the area `Caucasia (Ab + Ar + Gg + Rf(CS)) (Cc)` it...
Andreas Kohlbecker

05/12/2016

01:25 PM bug #5800 (Closed): Remove "Taxonomically Included In" from list of concept relationship types
... in concept relationship view.
Taxonomically Included In is deprecated and will be removed in future.
Andreas Müller
01:15 PM Revision 2d6c9835 (taxeditor): Typo
Andreas Müller
11:34 AM feature request #5697: Show name conserved against as [non xxx]
Also in the new user interface for choosing name relationships a hint is missing that these will be shown as "non xxx... Andreas Müller
11:27 AM feature request #5697: Show name conserved against as [non xxx]
The status is still missing in the portal, though it exists in the data: http://api.cybertaxonomy.org/flora_cuba/port... Andreas Müller

05/11/2016

10:04 PM Revision 6032f3bc (cdmlib): Move other invalid names to the end #5794
Andreas Müller
09:53 PM feature request #5795 (Closed): [DISCUSS] Do we need comb. ined. as a nomenclatural status?
In #3046 (and #5794) it is suggested to handle comb. ined. as an invalid status. Currently we do not have comb. ined.... Andreas Müller
09:49 PM bug #3046 (Closed): Sort order for taxa with status not being nom.inval. is incorrect
Open issues for other invalid status (provisional, comb. inval., comb. ined. and opp. utique oppr.) split to ticket #... Andreas Müller
09:47 PM feature request #5794 (Closed): Move other invalid names to the end
Split from #3046
In #3046 only nom. inval. and nom. nud. were put to the end with nom. nude. comes after nom. in...
Andreas Müller
07:43 PM bug #5676: Sensu does not show up if no author exists for secundum reference
As mentioned in Cuba Checklist: http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/a42ea47d-09df-4b94-af... Andreas Müller
05:56 PM bug #5676: Sensu does not show up if no author exists for secundum reference
where did you test this? Can you give an example uri?
Andreas Kohlbecker
05:46 PM bug #5676: Sensu does not show up if no author exists for secundum reference
Still does not work. Shows only "Cyperus unifolius" but should show "Cyperus unifolius" sec. Fabaceae.xlsx (added th... Andreas Müller
05:53 PM Revision 60f8f830 (cdmlib-apps): Export concept realtion type #5452
Patrick Plitzner
05:53 PM Revision 9a62ab6a (cdmlib-apps): Adjust import/export path #5452
Patrick Plitzner
05:53 PM Revision 33ba11bd (cdmlib-apps): Refactored conceptCode map and TaxonRelation map #5452
Patrick Plitzner
05:52 PM Revision 232898fb (taxeditor): i18n for #5758
Patrick Plitzner
05:41 PM feature request #5647: Aggregate misapplied names with multiple sensu references
Also on http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/6bbb3f75-ac3c-40f8-b91d-01069d5173c9 the sec... Andreas Müller
05:33 PM feature request #5647: Aggregate misapplied names with multiple sensu references
Replying to [[comment3|a.mueller]]:
> Hi Andreas,
>
> hier ein Beispiel für die dopptele sensu Anzeige: ...
So...
Andreas Müller
05:28 PM Revision d45bc597 (taxeditor): Remove "Close Connection" and changed "Connect" to "Create Data Model"
#5758 Patrick Plitzner
03:00 PM Revision 48879be4 (cdmlib-apps): Update BgbmInstancesUpdater
Andreas Müller
11:43 AM Revision b0cbdb10 (taxeditor): Adapt CdmServerInfo to always include cybertaxonomy.org (production) #5769
Andreas Müller
11:43 AM Revision d1fcc397 (taxeditor): Preliminary adapt CDM model cacher script to work for cached model update
Andreas Müller
10:52 AM Revision 4ed5c440 (cdmlib-apps): Export concept relationships
Patrick Plitzner
10:52 AM Revision e6c321b7 (cdmlib-apps): Change imported classification name
Patrick Plitzner

05/10/2016

06:09 PM Revision fb87cdf0 (cdmlib-apps): Remove unused generic and logger
Patrick Plitzner
06:04 PM Revision 4a31998d (cdmlib-apps): Export taxNr
Patrick Plitzner
04:35 PM Revision a7ed8d4b (cdmlib-apps): Fix export of TextData
Patrick Plitzner
04:34 PM Revision 56946f39 (cdmlib-apps): Use ISO date
Patrick Plitzner
04:34 PM Revision da891ec9 (cdmlib-apps): Import taxNr as identifier of taxon
Patrick Plitzner
02:49 PM feature request #5783 (Closed): Rename demo instances back to demo I and demo II
Currently they are called edit-WS I and edit-WS II which is not really intuitive and the demo instances are not only ... Andreas Müller
01:45 PM Revision c40d7820 (cdmlib-apps): Remove supporsCategoricalData flag for TextData features
Patrick Plitzner
12:41 PM Revision db305a52 (taxeditor): Add support for PersistentBag #5781
Patrick Plitzner
12:21 PM Revision d2ca0a1c (cdmlib-apps): Export synonymy and TextData
- some refactoring Patrick Plitzner
12:21 PM Revision 5dbdbb23 (cdmlib-apps): Set root element attributes
Patrick Plitzner
11:40 AM Revision 1130e566 (cdm-vaadin): setting correct cdmlib.version which was messed up during the release process
Andreas Kohlbecker
10:39 AM Revision 100665f3 (cdm-vaadin): fixing cdmlib version which was wronly set in the cdm-vaadin-RLS-FINISH job
Andreas Kohlbecker
10:39 AM Revision 8ebefd6a (cdmlib): Fix possible class cast exception for collections of features #5780
Patrick Plitzner

05/09/2016

05:45 PM Revision 6930747c (cdmlib-apps): Export features ("Eigenschaften")
Patrick Plitzner
05:44 PM Revision 3262d093 (cdmlib-apps): Refactored term import
Patrick Plitzner
04:23 PM feature request #5682: Implement condensed distribution string for Cuba
see also #5777, #5779, #5734
Andreas Müller
04:22 PM feature request #5779 (Closed): Update EuroPlusMedCondensedDistributionComposer to use new symbol field
Split from #5734
See also #5777, ...
Andreas Müller
04:18 PM feature request #5778 (Closed): Update symbols for PresenceAbsenceTerms in existing databases
see #5777
Andreas Müller
04:15 PM Revision e80f8337 (cdmlib): Update symbols for PresenceAbsenceTerms in csv files #5777
Andreas Müller
03:20 PM Revision 022a02a1 (cdmlib): Remove hierachy information from PresenceAbsenceTerm csv as it will not
be used. Andreas Müller
02:58 PM Revision d848e175 (cdmlib): minor
Andreas Müller
11:04 AM Revision 20624f5a (cdm-dataportal): advanced search hints on using the asterisk
Andreas Kohlbecker
10:52 AM Revision 9c6eb818 (cdm-dataportal): #4979 avoiding the deployment of jar artefacts for the dataportal module
Andreas Kohlbecker
10:43 AM Revision cac1390b (cdmlib): Add first version of cdmlib-db #5751
Andreas Müller
10:35 AM bug #5775 (Closed): Advanced Search AreaFilter: areas tree incomplete
In the cichorieae portal the tree of areas is incomplete.
The data portal obviously fetches the complete set of ar...
Andreas Kohlbecker
10:16 AM bug #5191: TransmissionEngineDistribution stops before it is 100% done
updating transmission engine request
Andreas Kohlbecker
09:50 AM Revision 15a0854d (cdm-server): Upgrade CDM Server compiler plugin to java 1.7
Andreas Müller

05/06/2016

11:32 PM bug #5773 (Duplicate): Exceptions during CDM Server startup are not caught correclty
Andreas Kohlbecker
05:49 PM bug #5773 (Duplicate): Exceptions during CDM Server startup are not caught correclty
Currently if an error appears during startup of CDM Server (e.g. during term loading) this is not necessarily indicat... Andreas Müller
10:41 PM bug #5774 (Closed): cdmserver misses to detect some errors in failed instances
The following error was missed, the cdmserver kept on reporting that the instance is 'started' even if it completely ... Andreas Kohlbecker
01:54 PM Revision a5f35c6f (cdmlib): Change serial version id for identifiable entity and other minor issues
Andreas Müller
01:09 PM feature request #5662 (Closed): New nomenclatural status nom. cons. des.
This ticket is generally fixed. Automated update works.
Only general issue is that term.titleCache is now filled wi...
Andreas Müller

05/05/2016

01:01 AM feature request #5606 (Closed): Add preferred stable URI to SpecimenOrObservation
fixed
Andreas Müller

05/04/2016

06:00 PM Revision 465a998e (taxeditor): Merge branch 'develop' into LibrAlign
Patrick Plitzner
05:58 PM Revision ff9af820 (cdmlib-apps): Sort exported taxon list
Patrick Plitzner
05:46 PM Revision f6102301 (cdmlib-apps): Export common name
Patrick Plitzner
05:29 PM Revision c09ef0ad (cdmlib-apps): Export epithet, rank and scientific name
Patrick Plitzner
11:45 AM Revision 30387e2b (cdmlib-apps): Add logging
Patrick Plitzner
11:44 AM Revision 072b4d45 (cdmlib-apps): Export taxonym "bereich"
Patrick Plitzner
11:04 AM Revision 70d09a58 (cdmlib-apps): Import taxa
Patrick Plitzner
10:33 AM Revision c09572ee (cdmlib-apps): minor
Patrick Plitzner

05/03/2016

07:27 PM Revision 4010865d (cdmlib): Fix empty protected titlecaches #5763
Andreas Müller
07:27 PM Revision b5e1bdbb (cdmlib): Adapt reusability of Credits / Rights
Andreas Müller
07:27 PM Revision 341c08ea (cdmlib): Adapt clone method for credits and rights to be consistent with JPA
mapping (not reusable). Andreas Müller
06:00 PM Revision 627b371b (cdm-dataportal): #4979 fixing location of artifact to be uploaded
Andreas Kohlbecker
05:53 PM Revision d059f83c (cdm-dataportal): Merge branch 'release/4.0.0' into develop
jenkins
05:53 PM Revision b034b8b0 (cdm-dataportal): updating poms for branch'release/4.0.0' with non-snapshot versions
jenkins
05:53 PM Revision 2c5d86f1 (cdm-dataportal): release-preparation: production level css
jenkins
05:51 PM Revision 90b8f8dc (cdm-dataportal): release-preparation: production level css
jenkins
05:50 PM Revision a283892e (cdm-dataportal): #4979 better commit before you push ;-)
Andreas Kohlbecker
05:45 PM Revision 10478240 (cdm-dataportal): #4979 git bug fix
Andreas Kohlbecker
05:39 PM Revision 66cea767 (cdm-dataportal): #4979 removing unnecessary remains of old version from script
Andreas Kohlbecker
05:35 PM Revision 6333aec9 (cdm-dataportal): updating poms for 4.1.0-SNAPSHOT development
jenkins
05:35 PM Revision 7c5661e2 (cdm-dataportal): updating poms for 4.0.0 branch with snapshot versions
jenkins
05:00 PM Revision 03e53b89 (cdm-dataportal): #4979 delpoy.sh script adapted and splitted
Andreas Kohlbecker
04:47 PM Revision 8fb2f8c2 (cdm-dataportal): #4979 setting merge=ours in gitattributes to avoid merge conflicts in gitflow
Andreas Kohlbecker
03:57 PM Revision bcb6df2c (cdm-dataportal): fist adaptions - incomplete
Andreas Kohlbecker
03:38 PM Revision fe36abb4 (cdm-server): Merge branch 'release/4.0.0' into develop
jenkins
03:37 PM Revision 3f6a11fd (cdm-server): updating poms for branch'release/4.0.0' with non-snapshot versions
jenkins
03:37 PM Revision f4b9d5f6 (cdm-server): setting source encoding and plugin version
Andreas Kohlbecker
03:17 PM Revision d84be7c3 (cdm-server): adding merge strategy for gitflow releases
Andreas Kohlbecker
03:14 PM Revision 5f9a4d04 (cdmlib-apps): Write export to XML file
Patrick Plitzner
02:27 PM Revision 32363554 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
02:27 PM Revision a3b92baf (cdm-webapp): Merge branch 'release/4.0.0' into develop
jenkins
02:27 PM Revision e9986cf3 (cdm-webapp): updating poms for branch'release/4.0.0' with non-snapshot versions
jenkins
02:27 PM Revision 186dcde0 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.0.0
jenkins
01:58 PM Revision b597979d (cdm-webapp): updating poms for branch'release/4.0.0' with non-snapshot versions
jenkins
01:58 PM Revision 978cd51d (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.0.0
jenkins
01:58 PM Revision ef644917 (taxeditor): Merge branch 'release/4.0.0' into develop
jenkins
01:58 PM Revision 4b30e08b (taxeditor): Merge branch 'release/4.0.0'
jenkins
01:57 PM Revision 8f1bd7fc (cdm-vaadin): Updating develop poms back to pre merge state
jenkins
01:57 PM Revision 67363206 (cdm-vaadin): Merge branch 'master' into develop
jenkins
01:57 PM Revision fbcabd08 (cdm-vaadin): updating develop poms to master versions to avoid merge conflicts
jenkins
01:57 PM Revision 9d197128 (cdm-vaadin): Merge branch 'release/4.0.0'
jenkins
01:54 PM Revision 86eca46c (cdm-vaadin): updating poms for branch'release/4.0.0' with non-snapshot versions
jenkins
01:54 PM Revision ea0f28da (cdmlib): Updating develop poms back to pre merge state
jenkins
01:54 PM Revision 953decc1 (cdmlib): Merge branch 'master' into develop
jenkins
01:54 PM Revision 5a97be23 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
01:54 PM Revision e21daba9 (cdmlib): Merge branch 'release/4.0.0'
jenkins
01:35 PM Revision c4db95cb (cdmlib): updating poms for branch'release/4.0.0' with non-snapshot versions
jenkins
01:19 PM task #5757 (New): move taxeditor configuration file into ~/.cdmLibrary/taxeditor/
1. move ~/.cdmLibrary/cdm_remote_servers.json to ~/.cdmLibrary/taxeditor/cdm_remote_servers.json
2. consider t...
Andreas Kohlbecker
12:55 PM Revision a282c5d8 (cdmlib): Cleanup MediaRepresentationPart and PolytomousKeyNode #5756
Andreas Müller
12:51 PM Revision 573e41ed (cdmlib-apps): Initial import of BfnXmlExport #5452
Patrick Plitzner
12:50 PM Revision 1196e86d (cdmlib-apps): Revert missing rank constant
Patrick Plitzner
10:14 AM Revision 84852ea5 (cdmlib-apps): Fix logger instantiation
Patrick Plitzner
10:11 AM Revision 58da7e98 (cdmlib-apps): Refactored string constants
Patrick Plitzner
10:11 AM Revision 0584658e (cdmlib-apps): Structure package architecture for BfnXml Im-/Export
Patrick Plitzner

05/02/2016

10:56 PM Revision 21241357 (cdmlib): Fix failing test for DescriptionUtility
Andreas Müller
10:24 PM Revision 8b74112c (cdmlib): Remove cascading to terms #5755
Andreas Müller
10:23 PM Revision af45e069 (cdmlib): minor
Andreas Müller
09:30 PM Revision 77eb660c (cdmlib): Add orphanRemoval to RelationshipTermBase.inverseRepresentation
Same exists for TermBase.representation so we have consistent behavior
now. Also it makes sense as inverse Representa...
Andreas Müller
09:09 PM Revision c53e35a3 (cdmlib): Remove cascade from term to vocabulary #5754
Andreas Müller
08:52 PM Revision a8cc3ea8 (cdmlib-apps): Update cdmlib-apps version to 4.1
Andreas Müller
08:49 PM Revision 4df8da90 (cdmlib-apps): minor
Andreas Müller
08:48 PM Revision 99a87dea (cdmlib-apps): update test model in appimport
Andreas Müller
05:41 PM bug #5492: Doubtful synonyms and misapplied names to be displayed correctly
is #5753 already implemented for this ticket?
Andreas Müller
05:24 PM bug #3276: NPE for "Move Elements" context menu option
Is this still an open issue?
Andreas Müller
05:21 PM bug #2592: InvalidDataAccessApiUsageException when saving description scope
Is this still an open issue?
Andreas Müller
04:19 PM feature request #5752 (Closed): Reduce TaxEditor size
There are many places where the Editor code needs to be cleaned up in terms of real dependencies and code which links... Andreas Müller
03:19 PM feature request #4716 (Resolved): Other dependencies to be updated
Andreas Müller
03:16 PM Revision 93b05693 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.0.0-SNAPSHOT
jenkins
03:16 PM Revision fcb51503 (cdm-webapp): updating poms for 4.1.0-SNAPSHOT development
jenkins
03:16 PM Revision 7f18f16c (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.1.0-SNAPSHOT
jenkins
03:14 PM Revision 62611fe9 (taxeditor): Updated version in pom / project files to taxeditor version : 4.1.0-SNAPSHOT and cdmlib version : 4.1.0-SNAPSHOT
jenkins
03:14 PM Revision b8dc1f1a (taxeditor): Updated version in pom / project files to taxeditor version : 4.0.0 and cdmlib version : 4.0.0
jenkins
02:20 PM Revision 2eb93744 (cdm-vaadin): jenkins bumping cdmlib.version to 4.0.0-SNAPSHOT
jenkins
02:20 PM Revision 69ec9364 (cdm-server): updating poms for 4.1.0-SNAPSHOT development
jenkins
02:20 PM Revision a9230500 (cdm-vaadin): updating poms for 4.1.0-SNAPSHOT development
jenkins
02:20 PM Revision 6d4bccc5 (cdm-vaadin): jenkins bumping cdmlib.version to 4.1.0-SNAPSHOT
jenkins
02:18 PM Revision 685583c7 (cdmlib): updating poms for 4.1.0-SNAPSHOT development
jenkins
02:05 PM Revision 31cdbbe4 (cdm-dataportal): fixing order by for term web service request
Andreas Kohlbecker
01:30 PM bug #5286 (Resolved): seemingly duplicate distributions
The task of reviewing this ticket encompasses for now only the problems and ideas described in #4411#note-10 to #441... Andreas Kohlbecker
01:28 PM bug #5286 (Feedback): seemingly duplicate distributions
reopening this ticket in favour of splitting the ticket #4411 in two
Andreas Kohlbecker
11:47 AM Revision e0bf8077 (cdm-dataportal): #5737 adapting test
Andreas Kohlbecker
10:14 AM Revision 542732a4 (cdmlib): Model Updater for other H2 test databases
Andreas Müller
10:14 AM Revision 7abafd61 (cdmlib): Update Cuba Condensed String handling
Andreas Müller
 

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