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feature request #5647

closed

Aggregate misapplied names with multiple sensu references

Added by Andreas Müller about 6 years ago. Updated over 3 years ago.

Status:
Closed
Priority:
New
Category:
cdm-dataportal
Target version:
Start date:
Due date:
% Done:

100%

Estimated time:
Severity:
minor
Tags:

Description

Sometimes we do have multiple sensu references for a misapplied name as multiple sources use the name in the wrong way.

This kind of messes up the synonymy if we repeat the name for each sensu.

Instead we could check if misapplied names in the synonymy are exactly equal except for the sensu and instead create a sensu reference like sensu A, B, C & D.

An example is Ossaea glomerata which is a misapplied name for Miconia cubacinerea Judd & Majure in Cuba Checklist: http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/6bbb3f75-ac3c-40f8-b91d-01069d5173c9 (we do now have 2 misapplied names, one for sec A&S which has an author, and for Flora de Cuba which has no author)

Note: Deduplication is already implemented somehow, currently sensu information is as annotation


Related issues

Related to EDIT - bug #5676: Sensu does not show up if no author exists for secundum referenceClosedAndreas Kohlbecker

Actions
Related to EDIT - bug #5491: Implement name phrase correctly for misapplied namesClosedAndreas Kohlbecker

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Related to EDIT - bug #5492: Doubtful synonyms and misapplied names to be displayed correctlyClosedAndreas Kohlbecker

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Related to EDIT - feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"In ProgressAndreas Müller

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Related to EDIT - feature request #7658: use new taxon relationship DTO webservice in portal ClosedAndreas Kohlbecker

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Actions #1

Updated by Andreas Müller about 6 years ago

  • Keywords set to Cuba
Actions #2

Updated by Andreas Müller about 6 years ago

Hi Andreas,

hier ein Beispiel für die dopptele sensu Anzeige:

http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/07ed9159-6564-4371-8096-5f429aca05f6/synonymy?highlite=a6617ebd-dd7f-4c53-9540-1ad47fabc5c3&acceptedFor=a6617ebd-dd7f-4c53-9540-1ad47fabc5c3#a6617ebd-dd7f-4c53-9540-1ad47fabc5c3

AM

====

Ah jetzt weiß ich warum das so ist.

Misapplied names mit dem selben namen werden de-dupliziert. Daher wurde beschlossen, dass die sec referenz immer nur als footnote angehängt wird.

Durch die neue generische Möglichkeit die sec referenz in allen Teilen des Portals anzeigen zu können, kommt die sec referenz bei den missapplied names wieder zum Vorschein.

a.

Actions #3

Updated by Andreas Kohlbecker about 6 years ago

  • Status changed from New to Resolved
  • Assignee changed from Andreas Kohlbecker to Andreas Müller
Actions #4

Updated by Andreas Müller about 6 years ago

  • Assignee changed from Andreas Müller to Andreas Kohlbecker

Deduplication already works except for references with missing author, but this is handled in a separate ticket #5676.

Another minor issue is to remove the duplicate "sensu"s. Due to the existing reference footnotes it is clearly distinguable where a new reference starts so we need sensu only once at the beginning but not before the second, third, ... misapplied name authorship. Semicolon separator is ok.

Check the above example to review if the missing authorship issue is solved here too once #5676 is solved

Actions #5

Updated by Andreas Kohlbecker about 6 years ago

  • Assignee changed from Andreas Kohlbecker to Andreas Müller

fixed: 6bb442f r27811 avoiding duplicate sensu at missapplications

Actions #6

Updated by Andreas Müller about 6 years ago

  • Target version changed from Unassigned CDM tickets to Release 4.0
Actions #7

Updated by Andreas Müller about 6 years ago

  • Assignee changed from Andreas Müller to Andreas Kohlbecker

Replying to a.mueller:

Hi Andreas,

hier ein Beispiel für die dopptele sensu Anzeige: ...

Sorry the given link was incorrect. It should be http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/1932a974-6139-4dae-98a4-98bb4e8362e4/synonymy?highlite=817c62e5-200d-4c71-b113-5a97db1da21b&acceptedFor=817c62e5-200d-4c71-b113-5a97db1da21b#817c62e5-200d-4c71-b113-5a97db1da21b

Unfortunately this shows that this ticket together with #5676 is not yet fixed correctly:

  1. A red error box shows up saying: cdm_compose_url(): missing pathParameter 0 for reference/$0/authorship

  2. "Zanthoxylum aromaticum" auct. shows the additional author sensu DC.1 but should not have an author at all

  3. A footnote appears that only shows "1. sensu" which does not make sense

Actions #8

Updated by Andreas Müller about 6 years ago

Also on http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/6bbb3f75-ac3c-40f8-b91d-01069d5173c9 the second MA secundum does not show up at all anymore. It is "Ossaea glomerata" sensu A&S1 now but should be "Ossaea glomerata" sensu A&S1, Flora de Cuba

Maybe this is an issue also handled by #5676 as Flora de Cuba has no author. Anyway it should appear at least in the footnotes.

Actions #9

Updated by Andreas Kohlbecker almost 6 years ago

  • Status changed from Resolved to Closed
  • Resolution set to fixed
  • % Done set to 100

That this is definitely fixed can only now be seen after the installation problems with flora-cuba portal are fixed

Actions #10

Updated by Andreas Müller almost 6 years ago

There is an other ticket for displaying references correctly if they have no author (currently it only shows an empty string)

Actions #11

Updated by Andreas Kohlbecker over 5 years ago

  • Related to bug #5676: Sensu does not show up if no author exists for secundum reference added
Actions #12

Updated by Andreas Kohlbecker over 3 years ago

  • Description updated (diff)
  • Private changed from Yes to No
Actions #13

Updated by Andreas Müller over 3 years ago

  • Related to bug #5491: Implement name phrase correctly for misapplied names added
Actions #14

Updated by Andreas Müller over 3 years ago

  • Related to bug #5492: Doubtful synonyms and misapplied names to be displayed correctly added
Actions #15

Updated by Andreas Müller over 3 years ago

  • Related to feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)" added
Actions #16

Updated by Andreas Müller over 3 years ago

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